AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027430 MtrunA17_Chr1g0183691 99.283 279 2 0 1 279 1 279 0.0 567
Msa0027430 MtrunA17_Chr2g0325501 43.017 179 92 3 5 180 18 189 1.76e-41 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027430 AT1G03900.1 70.545 275 62 6 10 279 12 272 1.01e-118 341
Msa0027430 AT3G58600.1 43.575 179 85 4 5 177 27 195 7.67e-40 140

Find 115 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTCTCTGATTTATTT+TGG 0.077754 1_1:-51743116 Msa0027430:three_prime_UTR
CAAGGGAAGCATGCGTTTAT+TGG 0.243287 1_1:-51744734 Msa0027430:CDS
GCTGGCATGCTTTCAGCTGC+TGG 0.245848 1_1:-51743916 Msa0027430:CDS
ATCGGATCTTTCTCAATTAC+AGG 0.250114 1_1:-51743701 Msa0027430:intron
GAATTTGAGAAACGCGTTAT+TGG 0.257049 1_1:+51745121 None:intergenic
GGTCCTGTATCTAGTGTTAA+AGG 0.284346 1_1:-51743760 Msa0027430:CDS
GGAGCAAGGTTCAATACTTT+TGG 0.310945 1_1:+51743862 None:intergenic
TTCTTCTAACGACATCGTTT+TGG 0.328092 1_1:+51745051 None:intergenic
TTGGGAGAGATCAAGGGATT+GGG 0.335083 1_1:+51742919 None:intergenic
AAGCATGCGTTTATTGGATT+GGG 0.336786 1_1:-51744728 Msa0027430:CDS
CACAAGGCGGCTGGTGGAGC+TGG 0.355323 1_1:-51743934 Msa0027430:CDS
GCCGTGACCGGTGCGAGATC+CGG 0.369388 1_1:-51744880 Msa0027430:CDS
GCGAAGAGATCACCGGAGTT+AGG 0.375730 1_1:+51744848 None:intergenic
GCTTTCAGCTGCTGGCCTAT+CGG 0.386640 1_1:-51743908 Msa0027430:CDS
CTTTCAGCTGCTGGCCTATC+GGG 0.396419 1_1:-51743907 Msa0027430:CDS
TCCCGGTCAGCGTGAGGGTT+CGG 0.398042 1_1:-51744810 Msa0027430:CDS
CGAGCAGCAACCGGATCATT+TGG 0.402087 1_1:+51743796 None:intergenic
TTCATCCTGCTGTTAATCAT+AGG 0.414816 1_1:-51744580 Msa0027430:CDS
TGCTGTTAATCATAGGCTTA+AGG 0.419472 1_1:-51744573 Msa0027430:intron
AACCGAACCCTCACGCTGAC+CGG 0.428541 1_1:+51744808 None:intergenic
CTTCCCTCATCAGCCACTCC+TGG 0.429001 1_1:-51743262 Msa0027430:CDS
GTCCCTTTAACACTAGATAC+AGG 0.431990 1_1:+51743757 None:intergenic
GAAGCATGCGTTTATTGGAT+TGG 0.436801 1_1:-51744729 Msa0027430:CDS
GCGTGAGGGTTCGGTTGAAC+CGG 0.442496 1_1:-51744801 Msa0027430:CDS
TGTGAGAAGAGAACATGATA+AGG 0.442504 1_1:-51744645 Msa0027430:CDS
TTTGAGAAAAGAAATATTGA+AGG 0.443231 1_1:-51743082 Msa0027430:three_prime_UTR
GGCTCCAATCAGACAAGATC+TGG 0.444379 1_1:-51744928 Msa0027430:CDS
CTTGGATCGACAGCTGCGTC+AGG 0.445581 1_1:-51743188 Msa0027430:three_prime_UTR
ATAAAGATTGGGAGAGATCA+AGG 0.446692 1_1:+51742912 None:intergenic
ATCCCGCCGCGAACAACCTC+CGG 0.448428 1_1:-51744971 Msa0027430:CDS
TTTGTTCTGAAGATTGAAGA+TGG 0.449673 1_1:-51744758 Msa0027430:CDS
ACGCCACAGTCAATAAAGAT+TGG 0.451335 1_1:+51742900 None:intergenic
CCTGGATCAACACCTGCATC+AGG 0.454323 1_1:-51743244 Msa0027430:CDS
TGGGAGAGATCAAGGGATTG+GGG 0.455280 1_1:+51742920 None:intergenic
ATTATATATACAGCCACTCT+TGG 0.456768 1_1:-51743206 Msa0027430:three_prime_UTR
ATTGGGAGAGATCAAGGGAT+TGG 0.457400 1_1:+51742918 None:intergenic
GAGTTTGAGTTTAATGTGAA+TGG 0.458393 1_1:+51745094 None:intergenic
CGCCGGAGGTTGTTCGCGGC+GGG 0.458516 1_1:+51744969 None:intergenic
AGAGAACATGATAAGGAGTC+TGG 0.464167 1_1:-51744638 Msa0027430:CDS
AAGATAGTAGCAGAGCATAT+TGG 0.466472 1_1:-51745235 None:intergenic
CCTGATGCAGGTGTTGATCC+AGG 0.466664 1_1:+51743244 None:intergenic
GAAGCAATCCGAGCAGCAAC+CGG 0.468103 1_1:+51743787 None:intergenic
CGCCACAGTCAATAAAGATT+GGG 0.470327 1_1:+51742901 None:intergenic
ACCGGATCATTTGGTGGGAG+TGG 0.474405 1_1:+51743805 None:intergenic
GTGCTTGACATTAATCCTGA+TGG 0.479670 1_1:+51743954 None:intergenic
TCCACTCCCACCAAATGATC+CGG 0.488066 1_1:-51743806 Msa0027430:CDS
CGGAGTTAGGATCTTCTAAC+CGG 0.488892 1_1:+51744861 None:intergenic
TAACCGCCGGAGGTTGTTCG+CGG 0.489732 1_1:+51744965 None:intergenic
GCGTCGTATCTCGCCGTGAC+CGG 0.490086 1_1:-51744892 Msa0027430:CDS
TATCTCGACGAATCGAGAAC+CGG 0.491919 1_1:+51744782 None:intergenic
GTCCTGTATCTAGTGTTAAA+GGG 0.497916 1_1:-51743759 Msa0027430:CDS
CGGACCAGATCTTGTCTGAT+TGG 0.500982 1_1:+51744924 None:intergenic
ATCGACAGCTGCGTCAGGAT+TGG 0.502193 1_1:-51743183 Msa0027430:three_prime_UTR
GTTTATTGGATTGGGGTTTG+CGG 0.504982 1_1:-51744720 Msa0027430:CDS
ATACGAGTATCTTAACTAAG+AGG 0.506250 1_1:-51743143 Msa0027430:three_prime_UTR
CAATCAGACAAGATCTGGTC+CGG 0.507755 1_1:-51744923 Msa0027430:CDS
AGTGTTAAAGGGACAAAAGA+AGG 0.515401 1_1:-51743748 Msa0027430:CDS
ACCGGATCTCGCACCGGTCA+CGG 0.515952 1_1:+51744879 None:intergenic
AGATACGACGCGGAGACGGC+CGG 0.516487 1_1:+51744904 None:intergenic
AAGGCTGCCCATCCTGATGC+AGG 0.520170 1_1:+51743232 None:intergenic
GTCGTTAGAAGAAGAAGAAG+AGG 0.522046 1_1:-51745041 Msa0027430:CDS
TGATTGCTCGAGGAATGTCC+TGG 0.523604 1_1:-51743006 Msa0027430:three_prime_UTR
AATGTCAAGCACAAGGCGGC+TGG 0.531510 1_1:-51743943 Msa0027430:CDS
ACCGAACCCTCACGCTGACC+GGG 0.532951 1_1:+51744809 None:intergenic
TTGAAGGAAGCTGAAGAAAG+AGG 0.533212 1_1:-51743066 Msa0027430:three_prime_UTR
TGTAGGAGGGAGAAACCATC+AGG 0.535611 1_1:-51743969 Msa0027430:intron
TCTCCTAAAACAGTTGACCT+TGG 0.544438 1_1:-51745189 Msa0027430:five_prime_UTR
GTCAAGCACAAGGCGGCTGG+TGG 0.546548 1_1:-51743940 Msa0027430:CDS
CAAATGATCCGGTTGCTGCT+CGG 0.548131 1_1:-51743795 Msa0027430:CDS
CTGAAGATTGAAGATGGACA+AGG 0.551166 1_1:-51744752 Msa0027430:CDS
GCTGCTCGGATTGCTTCTAC+CGG 0.551616 1_1:-51743781 Msa0027430:CDS
AGCATGCGTTTATTGGATTG+GGG 0.552301 1_1:-51744727 Msa0027430:CDS
TTCGCCGCATTTGTAACCGC+CGG 0.553188 1_1:+51744952 None:intergenic
ACAGTCTACTGATTCTCTAT+CGG 0.561613 1_1:-51743719 Msa0027430:CDS
GTCATAAGTATAGTTAGCGC+AGG 0.564945 1_1:-51743042 Msa0027430:three_prime_UTR
CTCCCAATCTTTATTGACTG+TGG 0.565157 1_1:-51742903 Msa0027430:three_prime_UTR
GATCAACACCTGCATCAGGA+TGG 0.567922 1_1:-51743240 Msa0027430:CDS
TTGAGTAATTTGATTGCTCG+AGG 0.568756 1_1:-51743016 Msa0027430:three_prime_UTR
CGCAGCTGTCGATCCAAGAG+TGG 0.568796 1_1:+51743193 None:intergenic
TTGGATTGGGGTTTGCGGAG+AGG 0.569343 1_1:-51744715 Msa0027430:CDS
ATCAACACCTGCATCAGGAT+GGG 0.573253 1_1:-51743239 Msa0027430:CDS
CTTCTAACCGGATCTCGCAC+CGG 0.574822 1_1:+51744873 None:intergenic
CCGCCGGAGGTTGTTCGCGG+CGG 0.582317 1_1:+51744968 None:intergenic
GGCGAGATACGACGCGGAGA+CGG 0.582763 1_1:+51744900 None:intergenic
GCAGCAACCGGATCATTTGG+TGG 0.583616 1_1:+51743799 None:intergenic
GCGGTTACAAATGCGGCGAA+TGG 0.584085 1_1:-51744949 Msa0027430:CDS
TTGCTACATGCACACCCGAT+AGG 0.586697 1_1:+51743893 None:intergenic
TCGCGGCGGGATCTTGTAGA+CGG 0.592219 1_1:+51744982 None:intergenic
GCCGCATTTGTAACCGCCGG+AGG 0.596884 1_1:+51744955 None:intergenic
TTAAGCCTATGATTAACAGC+AGG 0.600310 1_1:+51744575 None:intergenic
TGGCTGTATATATAATCAGA+AGG 0.603345 1_1:+51743213 None:intergenic
ACCTCCGGCGGTTACAAATG+CGG 0.604789 1_1:-51744956 Msa0027430:CDS
TACTCGTATATATAATCAGA+AGG 0.605799 1_1:+51743157 None:intergenic
TGATCCAGGAGTGGCTGATG+AGG 0.607039 1_1:+51743258 None:intergenic
GTCTGGTGATGCTGATGCCG+CGG 0.607238 1_1:-51744621 Msa0027430:CDS
CGCGAACGACGAGGAGTGTG+TGG 0.610612 1_1:+51745011 None:intergenic
CAGCAACCGGATCATTTGGT+GGG 0.614621 1_1:+51743800 None:intergenic
CAGGATTAATGTCAAGCACA+AGG 0.616170 1_1:-51743950 Msa0027430:CDS
AAACATGTTATTACAAACCA+AGG 0.618335 1_1:+51742967 None:intergenic
TAAAGATTGGGAGAGATCAA+GGG 0.622275 1_1:+51742913 None:intergenic
TGAGAAACGCGTTATTGGTG+TGG 0.623056 1_1:+51745126 None:intergenic
CGGTTAGAAGATCCTAACTC+CGG 0.634275 1_1:-51744860 Msa0027430:CDS
ACACGCAGCGAAGAGATCAC+CGG 0.637569 1_1:+51744841 None:intergenic
TTTAACACTAGATACAGGAC+CGG 0.645020 1_1:+51743762 None:intergenic
CGGCGACTTCGCGAACGACG+AGG 0.648082 1_1:+51745002 None:intergenic
ATTTGGTGGGAGTGGAAGAG+CGG 0.652140 1_1:+51743813 None:intergenic
TGCAGGTGTTGATCCAGGAG+TGG 0.652617 1_1:+51743249 None:intergenic
TGAAGATTGAAGATGGACAA+GGG 0.659170 1_1:-51744751 Msa0027430:CDS
GATCCAGGAGTGGCTGATGA+GGG 0.665742 1_1:+51743259 None:intergenic
TGGTGATGCTGATGCCGCGG+AGG 0.679687 1_1:-51744618 Msa0027430:CDS
CCGCCGCGAACAACCTCCGG+CGG 0.687466 1_1:-51744968 Msa0027430:CDS
ATCGATCTGTGAATCCTCCG+CGG 0.729159 1_1:+51744604 None:intergenic
GATTAATGTCAAGCACAAGG+CGG 0.745005 1_1:-51743947 Msa0027430:CDS
CAAACACAAAGACAACACCA+AGG 0.791676 1_1:+51745172 None:intergenic
GGTCACGGCGAGATACGACG+CGG 0.826251 1_1:+51744894 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGTTTTTTGTGTATTTT+TGG - chr1_1:51743718-51743737 Msa0027430:CDS 15.0%
!!! TATTATTCTCTGATTTATTT+TGG - chr1_1:51745003-51745022 Msa0027430:CDS 15.0%
!!! ATTATTCTCTGATTTATTTT+GGG - chr1_1:51745004-51745023 Msa0027430:CDS 15.0%
!!! ATTAGTTTTTTGTGTATTTT+TGG - chr1_1:51743718-51743737 Msa0027430:CDS 15.0%
!!! TATTATTCTCTGATTTATTT+TGG - chr1_1:51745003-51745022 Msa0027430:CDS 15.0%
!!! ATTATTCTCTGATTTATTTT+GGG - chr1_1:51745004-51745023 Msa0027430:CDS 15.0%
!!! TGAACTTTAATTTATTGTAG+CGG - chr1_1:51743622-51743641 Msa0027430:intron 20.0%
!! TTATGATATAATGATGATCA+TGG - chr1_1:51743803-51743822 Msa0027430:CDS 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG + chr1_1:51744043-51744062 None:intergenic 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG + chr1_1:51744044-51744063 None:intergenic 20.0%
!! ACAATATAGAGAAATTAAAC+TGG + chr1_1:51744771-51744790 None:intergenic 20.0%
!!! TTATTCTCTGATTTATTTTG+GGG - chr1_1:51745005-51745024 Msa0027430:CDS 20.0%
!! TTTGAGAAAAGAAATATTGA+AGG - chr1_1:51745037-51745056 Msa0027430:CDS 20.0%
!!! TGAACTTTAATTTATTGTAG+CGG - chr1_1:51743622-51743641 Msa0027430:intron 20.0%
!! TTATGATATAATGATGATCA+TGG - chr1_1:51743803-51743822 Msa0027430:CDS 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG + chr1_1:51744043-51744062 None:intergenic 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG + chr1_1:51744044-51744063 None:intergenic 20.0%
!! ACAATATAGAGAAATTAAAC+TGG + chr1_1:51744771-51744790 None:intergenic 20.0%
!!! TTATTCTCTGATTTATTTTG+GGG - chr1_1:51745005-51745024 Msa0027430:CDS 20.0%
!! TTTGAGAAAAGAAATATTGA+AGG - chr1_1:51745037-51745056 Msa0027430:CDS 20.0%
!!! TTCTCCAATGTTTTAAATCA+TGG - chr1_1:51743892-51743911 Msa0027430:CDS 25.0%
!! ACAACCATGATTTAAAACAT+TGG + chr1_1:51743899-51743918 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG - chr1_1:51743898-51743917 Msa0027430:CDS 25.0%
! AAAACCATGTTTACAAATCA+CGG - chr1_1:51744049-51744068 Msa0027430:intron 25.0%
! AAAACAAATGAAGTGGAAAT+AGG + chr1_1:51744477-51744496 None:intergenic 25.0%
! TATATGCATAAACAAAGCAA+TGG + chr1_1:51744680-51744699 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG - chr1_1:51744716-51744735 Msa0027430:CDS 25.0%
! ATTCATATTAAACAGTGTCT+GGG + chr1_1:51744800-51744819 None:intergenic 25.0%
! TACTCGTATATATAATCAGA+AGG + chr1_1:51744965-51744984 None:intergenic 25.0%
!!! TATTCTCTGATTTATTTTGG+GGG - chr1_1:51745006-51745025 Msa0027430:CDS 25.0%
!! GAAATATTGATGTTTTTCCT+TGG - chr1_1:51745135-51745154 Msa0027430:five_prime_UTR 25.0%
! AAACATGTTATTACAAACCA+AGG + chr1_1:51745155-51745174 None:intergenic 25.0%
!!! TTCTCCAATGTTTTAAATCA+TGG - chr1_1:51743892-51743911 Msa0027430:CDS 25.0%
!! ACAACCATGATTTAAAACAT+TGG + chr1_1:51743899-51743918 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG - chr1_1:51743898-51743917 Msa0027430:CDS 25.0%
! AAAACCATGTTTACAAATCA+CGG - chr1_1:51744049-51744068 Msa0027430:intron 25.0%
! AAAACAAATGAAGTGGAAAT+AGG + chr1_1:51744477-51744496 None:intergenic 25.0%
! TATATGCATAAACAAAGCAA+TGG + chr1_1:51744680-51744699 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG - chr1_1:51744716-51744735 Msa0027430:CDS 25.0%
! ATTCATATTAAACAGTGTCT+GGG + chr1_1:51744800-51744819 None:intergenic 25.0%
! TACTCGTATATATAATCAGA+AGG + chr1_1:51744965-51744984 None:intergenic 25.0%
!!! TATTCTCTGATTTATTTTGG+GGG - chr1_1:51745006-51745025 Msa0027430:CDS 25.0%
!! GAAATATTGATGTTTTTCCT+TGG - chr1_1:51745135-51745154 Msa0027430:five_prime_UTR 25.0%
! AAACATGTTATTACAAACCA+AGG + chr1_1:51745155-51745174 None:intergenic 25.0%
! GAGTTTGAGTTTAATGTGAA+TGG + chr1_1:51743028-51743047 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG - chr1_1:51743361-51743380 Msa0027430:intron 30.0%
!! TGATCACACAAATTTGCTAA+TGG + chr1_1:51743578-51743597 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG - chr1_1:51743737-51743756 Msa0027430:CDS 30.0%
ATTTGGGCAAAAAATAACCT+CGG + chr1_1:51743837-51743856 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG + chr1_1:51743860-51743879 None:intergenic 30.0%
AGTCACTATTGAGATTACAT+TGG + chr1_1:51743970-51743989 None:intergenic 30.0%
TCGACAAATACTTCAAACAT+AGG + chr1_1:51744124-51744143 None:intergenic 30.0%
! TGTTTGAAGTATTTGTCGAT+TGG - chr1_1:51744125-51744144 Msa0027430:intron 30.0%
AAATGAAGTGGAAATAGGAA+AGG + chr1_1:51744472-51744491 None:intergenic 30.0%
GATTGCAAAAACAAATGAAG+TGG + chr1_1:51744484-51744503 None:intergenic 30.0%
AGAACTTGCAAATTATTGCA+TGG - chr1_1:51744513-51744532 Msa0027430:intron 30.0%
CATAATCTTAGATAGGTACA+CGG + chr1_1:51744606-51744625 None:intergenic 30.0%
AGCATAGCATAATCTTAGAT+AGG + chr1_1:51744613-51744632 None:intergenic 30.0%
GATTCATATTAAACAGTGTC+TGG + chr1_1:51744801-51744820 None:intergenic 30.0%
TGGCTGTATATATAATCAGA+AGG + chr1_1:51744909-51744928 None:intergenic 30.0%
ATTATATATACAGCCACTCT+TGG - chr1_1:51744913-51744932 Msa0027430:CDS 30.0%
ATACGAGTATCTTAACTAAG+AGG - chr1_1:51744976-51744995 Msa0027430:CDS 30.0%
GGAAAAACATCAATATTTCC+AGG + chr1_1:51745134-51745153 None:intergenic 30.0%
! GAGTTTGAGTTTAATGTGAA+TGG + chr1_1:51743028-51743047 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG - chr1_1:51743361-51743380 Msa0027430:intron 30.0%
!! TGATCACACAAATTTGCTAA+TGG + chr1_1:51743578-51743597 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG - chr1_1:51743737-51743756 Msa0027430:CDS 30.0%
ATTTGGGCAAAAAATAACCT+CGG + chr1_1:51743837-51743856 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG + chr1_1:51743860-51743879 None:intergenic 30.0%
AGTCACTATTGAGATTACAT+TGG + chr1_1:51743970-51743989 None:intergenic 30.0%
TCGACAAATACTTCAAACAT+AGG + chr1_1:51744124-51744143 None:intergenic 30.0%
! TGTTTGAAGTATTTGTCGAT+TGG - chr1_1:51744125-51744144 Msa0027430:intron 30.0%
AAATGAAGTGGAAATAGGAA+AGG + chr1_1:51744472-51744491 None:intergenic 30.0%
GATTGCAAAAACAAATGAAG+TGG + chr1_1:51744484-51744503 None:intergenic 30.0%
AGAACTTGCAAATTATTGCA+TGG - chr1_1:51744513-51744532 Msa0027430:intron 30.0%
CATAATCTTAGATAGGTACA+CGG + chr1_1:51744606-51744625 None:intergenic 30.0%
AGCATAGCATAATCTTAGAT+AGG + chr1_1:51744613-51744632 None:intergenic 30.0%
GATTCATATTAAACAGTGTC+TGG + chr1_1:51744801-51744820 None:intergenic 30.0%
TGGCTGTATATATAATCAGA+AGG + chr1_1:51744909-51744928 None:intergenic 30.0%
ATTATATATACAGCCACTCT+TGG - chr1_1:51744913-51744932 Msa0027430:CDS 30.0%
ATACGAGTATCTTAACTAAG+AGG - chr1_1:51744976-51744995 Msa0027430:CDS 30.0%
GGAAAAACATCAATATTTCC+AGG + chr1_1:51745134-51745153 None:intergenic 30.0%
GAATTTGAGAAACGCGTTAT+TGG + chr1_1:51743001-51743020 None:intergenic 35.0%
! TTCTTCTAACGACATCGTTT+TGG + chr1_1:51743071-51743090 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG - chr1_1:51743079-51743098 Msa0027430:three_prime_UTR 35.0%
TGAAGATTGAAGATGGACAA+GGG - chr1_1:51743368-51743387 Msa0027430:intron 35.0%
AAGCATGCGTTTATTGGATT+GGG - chr1_1:51743391-51743410 Msa0027430:intron 35.0%
TGTGAGAAGAGAACATGATA+AGG - chr1_1:51743474-51743493 Msa0027430:intron 35.0%
TTCATCCTGCTGTTAATCAT+AGG - chr1_1:51743539-51743558 Msa0027430:intron 35.0%
TTAAGCCTATGATTAACAGC+AGG + chr1_1:51743547-51743566 None:intergenic 35.0%
TGCTGTTAATCATAGGCTTA+AGG - chr1_1:51743546-51743565 Msa0027430:intron 35.0%
CTACTCTAAACATCGGATTT+GGG + chr1_1:51743853-51743872 None:intergenic 35.0%
ACTACTCTAAACATCGGATT+TGG + chr1_1:51743854-51743873 None:intergenic 35.0%
! TTGCTATTGCAAATGATCGT+GGG - chr1_1:51743935-51743954 Msa0027430:CDS 35.0%
TAAAAAAGGGTTTGCGATCT+GGG + chr1_1:51744030-51744049 None:intergenic 35.0%
TTAAAAAAGGGTTTGCGATC+TGG + chr1_1:51744031-51744050 None:intergenic 35.0%
! AAGACCGTGATTTGTAAACA+TGG + chr1_1:51744056-51744075 None:intergenic 35.0%
CTTCAAACATAGGATAAGCA+AGG + chr1_1:51744114-51744133 None:intergenic 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG + chr1_1:51744254-51744273 None:intergenic 35.0%
TTTAACACTAGATACAGGAC+CGG + chr1_1:51744360-51744379 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG - chr1_1:51744360-51744379 Msa0027430:intron 35.0%
AGTGTTAAAGGGACAAAAGA+AGG - chr1_1:51744371-51744390 Msa0027430:intron 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG - chr1_1:51744400-51744419 Msa0027430:intron 35.0%
ATCGGATCTTTCTCAATTAC+AGG - chr1_1:51744418-51744437 Msa0027430:intron 35.0%
TTTCTCAATTACAGGTATGC+TGG - chr1_1:51744426-51744445 Msa0027430:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG - chr1_1:51744518-51744537 Msa0027430:intron 35.0%
TTGAGTAATTTGATTGCTCG+AGG - chr1_1:51745103-51745122 Msa0027430:five_prime_UTR 35.0%
TAAAGATTGGGAGAGATCAA+GGG + chr1_1:51745209-51745228 None:intergenic 35.0%
ATAAAGATTGGGAGAGATCA+AGG + chr1_1:51745210-51745229 None:intergenic 35.0%
GAATTTGAGAAACGCGTTAT+TGG + chr1_1:51743001-51743020 None:intergenic 35.0%
! TTCTTCTAACGACATCGTTT+TGG + chr1_1:51743071-51743090 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG - chr1_1:51743079-51743098 Msa0027430:three_prime_UTR 35.0%
TGAAGATTGAAGATGGACAA+GGG - chr1_1:51743368-51743387 Msa0027430:intron 35.0%
AAGCATGCGTTTATTGGATT+GGG - chr1_1:51743391-51743410 Msa0027430:intron 35.0%
TGTGAGAAGAGAACATGATA+AGG - chr1_1:51743474-51743493 Msa0027430:intron 35.0%
TTCATCCTGCTGTTAATCAT+AGG - chr1_1:51743539-51743558 Msa0027430:intron 35.0%
TTAAGCCTATGATTAACAGC+AGG + chr1_1:51743547-51743566 None:intergenic 35.0%
TGCTGTTAATCATAGGCTTA+AGG - chr1_1:51743546-51743565 Msa0027430:intron 35.0%
CTACTCTAAACATCGGATTT+GGG + chr1_1:51743853-51743872 None:intergenic 35.0%
ACTACTCTAAACATCGGATT+TGG + chr1_1:51743854-51743873 None:intergenic 35.0%
! TTGCTATTGCAAATGATCGT+GGG - chr1_1:51743935-51743954 Msa0027430:CDS 35.0%
TAAAAAAGGGTTTGCGATCT+GGG + chr1_1:51744030-51744049 None:intergenic 35.0%
TTAAAAAAGGGTTTGCGATC+TGG + chr1_1:51744031-51744050 None:intergenic 35.0%
! AAGACCGTGATTTGTAAACA+TGG + chr1_1:51744056-51744075 None:intergenic 35.0%
CTTCAAACATAGGATAAGCA+AGG + chr1_1:51744114-51744133 None:intergenic 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG + chr1_1:51744254-51744273 None:intergenic 35.0%
TTTAACACTAGATACAGGAC+CGG + chr1_1:51744360-51744379 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG - chr1_1:51744360-51744379 Msa0027430:intron 35.0%
AGTGTTAAAGGGACAAAAGA+AGG - chr1_1:51744371-51744390 Msa0027430:intron 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG - chr1_1:51744400-51744419 Msa0027430:intron 35.0%
ATCGGATCTTTCTCAATTAC+AGG - chr1_1:51744418-51744437 Msa0027430:intron 35.0%
TTTCTCAATTACAGGTATGC+TGG - chr1_1:51744426-51744445 Msa0027430:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG - chr1_1:51744518-51744537 Msa0027430:intron 35.0%
TTGAGTAATTTGATTGCTCG+AGG - chr1_1:51745103-51745122 Msa0027430:five_prime_UTR 35.0%
TAAAGATTGGGAGAGATCAA+GGG + chr1_1:51745209-51745228 None:intergenic 35.0%
ATAAAGATTGGGAGAGATCA+AGG + chr1_1:51745210-51745229 None:intergenic 35.0%
TCTCCTAAAACAGTTGACCT+TGG - chr1_1:51742930-51742949 Msa0027430:three_prime_UTR 40.0%
! ACACCAAGGTCAACTGTTTT+AGG + chr1_1:51742936-51742955 None:intergenic 40.0%
CAAACACAAAGACAACACCA+AGG + chr1_1:51742950-51742969 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG - chr1_1:51743078-51743097 Msa0027430:three_prime_UTR 40.0%
CTGAAGATTGAAGATGGACA+AGG - chr1_1:51743367-51743386 Msa0027430:intron 40.0%
GAAGCATGCGTTTATTGGAT+TGG - chr1_1:51743390-51743409 Msa0027430:intron 40.0%
AGCATGCGTTTATTGGATTG+GGG - chr1_1:51743392-51743411 Msa0027430:intron 40.0%
! GTTTATTGGATTGGGGTTTG+CGG - chr1_1:51743399-51743418 Msa0027430:intron 40.0%
AGAGAACATGATAAGGAGTC+TGG - chr1_1:51743481-51743500 Msa0027430:intron 40.0%
! GTTGCTATTGCAAATGATCG+TGG - chr1_1:51743934-51743953 Msa0027430:CDS 40.0%
GTGCTTGACATTAATCCTGA+TGG + chr1_1:51744168-51744187 None:intergenic 40.0%
CAGGATTAATGTCAAGCACA+AGG - chr1_1:51744169-51744188 Msa0027430:intron 40.0%
GATTAATGTCAAGCACAAGG+CGG - chr1_1:51744172-51744191 Msa0027430:intron 40.0%
! GGAGCAAGGTTCAATACTTT+TGG + chr1_1:51744260-51744279 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG - chr1_1:51744359-51744378 Msa0027430:intron 40.0%
GTCCCTTTAACACTAGATAC+AGG + chr1_1:51744365-51744384 None:intergenic 40.0%
GGAAATAGGAAAGGCTCTTA+AGG + chr1_1:51744463-51744482 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG - chr1_1:51744517-51744536 Msa0027430:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG + chr1_1:51744752-51744771 None:intergenic 40.0%
TTGAAGGAAGCTGAAGAAAG+AGG - chr1_1:51745053-51745072 Msa0027430:exon 40.0%
GTCATAAGTATAGTTAGCGC+AGG - chr1_1:51745077-51745096 Msa0027430:five_prime_UTR 40.0%
! CTCCCAATCTTTATTGACTG+TGG - chr1_1:51745216-51745235 Msa0027430:five_prime_UTR 40.0%
CGCCACAGTCAATAAAGATT+GGG + chr1_1:51745221-51745240 None:intergenic 40.0%
ACGCCACAGTCAATAAAGAT+TGG + chr1_1:51745222-51745241 None:intergenic 40.0%
TCTCCTAAAACAGTTGACCT+TGG - chr1_1:51742930-51742949 Msa0027430:three_prime_UTR 40.0%
! ACACCAAGGTCAACTGTTTT+AGG + chr1_1:51742936-51742955 None:intergenic 40.0%
CAAACACAAAGACAACACCA+AGG + chr1_1:51742950-51742969 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG - chr1_1:51743078-51743097 Msa0027430:three_prime_UTR 40.0%
CTGAAGATTGAAGATGGACA+AGG - chr1_1:51743367-51743386 Msa0027430:intron 40.0%
GAAGCATGCGTTTATTGGAT+TGG - chr1_1:51743390-51743409 Msa0027430:intron 40.0%
AGCATGCGTTTATTGGATTG+GGG - chr1_1:51743392-51743411 Msa0027430:intron 40.0%
! GTTTATTGGATTGGGGTTTG+CGG - chr1_1:51743399-51743418 Msa0027430:intron 40.0%
AGAGAACATGATAAGGAGTC+TGG - chr1_1:51743481-51743500 Msa0027430:intron 40.0%
! GTTGCTATTGCAAATGATCG+TGG - chr1_1:51743934-51743953 Msa0027430:CDS 40.0%
GTGCTTGACATTAATCCTGA+TGG + chr1_1:51744168-51744187 None:intergenic 40.0%
CAGGATTAATGTCAAGCACA+AGG - chr1_1:51744169-51744188 Msa0027430:intron 40.0%
GATTAATGTCAAGCACAAGG+CGG - chr1_1:51744172-51744191 Msa0027430:intron 40.0%
! GGAGCAAGGTTCAATACTTT+TGG + chr1_1:51744260-51744279 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG - chr1_1:51744359-51744378 Msa0027430:intron 40.0%
GTCCCTTTAACACTAGATAC+AGG + chr1_1:51744365-51744384 None:intergenic 40.0%
GGAAATAGGAAAGGCTCTTA+AGG + chr1_1:51744463-51744482 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG - chr1_1:51744517-51744536 Msa0027430:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG + chr1_1:51744752-51744771 None:intergenic 40.0%
TTGAAGGAAGCTGAAGAAAG+AGG - chr1_1:51745053-51745072 Msa0027430:exon 40.0%
GTCATAAGTATAGTTAGCGC+AGG - chr1_1:51745077-51745096 Msa0027430:five_prime_UTR 40.0%
! CTCCCAATCTTTATTGACTG+TGG - chr1_1:51745216-51745235 Msa0027430:five_prime_UTR 40.0%
CGCCACAGTCAATAAAGATT+GGG + chr1_1:51745221-51745240 None:intergenic 40.0%
ACGCCACAGTCAATAAAGAT+TGG + chr1_1:51745222-51745241 None:intergenic 40.0%
TGAGAAACGCGTTATTGGTG+TGG + chr1_1:51742996-51743015 None:intergenic 45.0%
CAATCAGACAAGATCTGGTC+CGG - chr1_1:51743196-51743215 Msa0027430:three_prime_UTR 45.0%
CGGAGTTAGGATCTTCTAAC+CGG + chr1_1:51743261-51743280 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG - chr1_1:51743259-51743278 Msa0027430:CDS 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG - chr1_1:51743292-51743311 Msa0027430:intron 45.0%
TATCTCGACGAATCGAGAAC+CGG + chr1_1:51743340-51743359 None:intergenic 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG - chr1_1:51743385-51743404 Msa0027430:intron 45.0%
TGATCATGGTGAATTGTCCG+AGG - chr1_1:51743817-51743836 Msa0027430:CDS 45.0%
TGCAAATGATCGTGGGCAAA+TGG - chr1_1:51743942-51743961 Msa0027430:CDS 45.0%
GCAAATGATCGTGGGCAAAT+GGG - chr1_1:51743943-51743962 Msa0027430:CDS 45.0%
CAAATGATCGTGGGCAAATG+GGG - chr1_1:51743944-51743963 Msa0027430:CDS 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG - chr1_1:51744133-51744152 Msa0027430:intron 45.0%
AAGGCTCTTAAGGAATGAGC+AGG + chr1_1:51744453-51744472 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG - chr1_1:51744880-51744899 Msa0027430:CDS 45.0%
TTGGGAGAGATCAAGGGATT+GGG + chr1_1:51745203-51745222 None:intergenic 45.0%
ATTGGGAGAGATCAAGGGAT+TGG + chr1_1:51745204-51745223 None:intergenic 45.0%
TGAGAAACGCGTTATTGGTG+TGG + chr1_1:51742996-51743015 None:intergenic 45.0%
CAATCAGACAAGATCTGGTC+CGG - chr1_1:51743196-51743215 Msa0027430:three_prime_UTR 45.0%
CGGAGTTAGGATCTTCTAAC+CGG + chr1_1:51743261-51743280 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG - chr1_1:51743259-51743278 Msa0027430:CDS 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG - chr1_1:51743292-51743311 Msa0027430:intron 45.0%
TATCTCGACGAATCGAGAAC+CGG + chr1_1:51743340-51743359 None:intergenic 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG - chr1_1:51743385-51743404 Msa0027430:intron 45.0%
TGATCATGGTGAATTGTCCG+AGG - chr1_1:51743817-51743836 Msa0027430:CDS 45.0%
TGCAAATGATCGTGGGCAAA+TGG - chr1_1:51743942-51743961 Msa0027430:CDS 45.0%
GCAAATGATCGTGGGCAAAT+GGG - chr1_1:51743943-51743962 Msa0027430:CDS 45.0%
CAAATGATCGTGGGCAAATG+GGG - chr1_1:51743944-51743963 Msa0027430:CDS 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG - chr1_1:51744133-51744152 Msa0027430:intron 45.0%
AAGGCTCTTAAGGAATGAGC+AGG + chr1_1:51744453-51744472 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG - chr1_1:51744880-51744899 Msa0027430:CDS 45.0%
TTGGGAGAGATCAAGGGATT+GGG + chr1_1:51745203-51745222 None:intergenic 45.0%
ATTGGGAGAGATCAAGGGAT+TGG + chr1_1:51745204-51745223 None:intergenic 45.0%
GGCTCCAATCAGACAAGATC+TGG - chr1_1:51743191-51743210 Msa0027430:three_prime_UTR 50.0%
CGGACCAGATCTTGTCTGAT+TGG + chr1_1:51743198-51743217 None:intergenic 50.0%
ATCGATCTGTGAATCCTCCG+CGG + chr1_1:51743518-51743537 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG + chr1_1:51744016-51744035 None:intergenic 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG - chr1_1:51744136-51744155 Msa0027430:intron 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG - chr1_1:51744137-51744156 Msa0027430:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG + chr1_1:51744151-51744170 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG - chr1_1:51744150-51744169 Msa0027430:intron 50.0%
TTGCTACATGCACACCCGAT+AGG + chr1_1:51744229-51744248 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG + chr1_1:51744287-51744306 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG + chr1_1:51744309-51744328 None:intergenic 50.0%
TCCACTCCCACCAAATGATC+CGG - chr1_1:51744313-51744332 Msa0027430:intron 50.0%
CAGCAACCGGATCATTTGGT+GGG + chr1_1:51744322-51744341 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG - chr1_1:51744324-51744343 Msa0027430:intron 50.0%
GATCAACACCTGCATCAGGA+TGG - chr1_1:51744879-51744898 Msa0027430:CDS 50.0%
TGATTGCTCGAGGAATGTCC+TGG - chr1_1:51745113-51745132 Msa0027430:five_prime_UTR 50.0%
TGGGAGAGATCAAGGGATTG+GGG + chr1_1:51745202-51745221 None:intergenic 50.0%
GGCTCCAATCAGACAAGATC+TGG - chr1_1:51743191-51743210 Msa0027430:three_prime_UTR 50.0%
CGGACCAGATCTTGTCTGAT+TGG + chr1_1:51743198-51743217 None:intergenic 50.0%
ATCGATCTGTGAATCCTCCG+CGG + chr1_1:51743518-51743537 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG + chr1_1:51744016-51744035 None:intergenic 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG - chr1_1:51744136-51744155 Msa0027430:intron 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG - chr1_1:51744137-51744156 Msa0027430:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG + chr1_1:51744151-51744170 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG - chr1_1:51744150-51744169 Msa0027430:intron 50.0%
TTGCTACATGCACACCCGAT+AGG + chr1_1:51744229-51744248 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG + chr1_1:51744287-51744306 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG + chr1_1:51744309-51744328 None:intergenic 50.0%
TCCACTCCCACCAAATGATC+CGG - chr1_1:51744313-51744332 Msa0027430:intron 50.0%
CAGCAACCGGATCATTTGGT+GGG + chr1_1:51744322-51744341 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG - chr1_1:51744324-51744343 Msa0027430:intron 50.0%
GATCAACACCTGCATCAGGA+TGG - chr1_1:51744879-51744898 Msa0027430:CDS 50.0%
TGATTGCTCGAGGAATGTCC+TGG - chr1_1:51745113-51745132 Msa0027430:five_prime_UTR 50.0%
TGGGAGAGATCAAGGGATTG+GGG + chr1_1:51745202-51745221 None:intergenic 50.0%
ACCTCCGGCGGTTACAAATG+CGG - chr1_1:51743163-51743182 Msa0027430:three_prime_UTR 55.0%
TTCGCCGCATTTGTAACCGC+CGG + chr1_1:51743170-51743189 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG - chr1_1:51743170-51743189 Msa0027430:three_prime_UTR 55.0%
CTTCTAACCGGATCTCGCAC+CGG + chr1_1:51743249-51743268 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG + chr1_1:51743274-51743293 None:intergenic 55.0%
ACACGCAGCGAAGAGATCAC+CGG + chr1_1:51743281-51743300 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG - chr1_1:51743303-51743322 Msa0027430:intron 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG - chr1_1:51743304-51743323 Msa0027430:intron 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG - chr1_1:51743404-51743423 Msa0027430:intron 55.0%
AATGTCAAGCACAAGGCGGC+TGG - chr1_1:51744176-51744195 Msa0027430:intron 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG - chr1_1:51744211-51744230 Msa0027430:intron 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG - chr1_1:51744212-51744231 Msa0027430:intron 55.0%
ATTGAACCTTGCTCCCCCAC+CGG - chr1_1:51744265-51744284 Msa0027430:intron 55.0%
! TGATTTTCCCTGCACCCGGT+GGG + chr1_1:51744283-51744302 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG + chr1_1:51744317-51744336 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG + chr1_1:51744323-51744342 None:intergenic 55.0%
CGAGCAGCAACCGGATCATT+TGG + chr1_1:51744326-51744345 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG + chr1_1:51744335-51744354 None:intergenic 55.0%
GCTGCTCGGATTGCTTCTAC+CGG - chr1_1:51744338-51744357 Msa0027430:intron 55.0%
GATCCAGGAGTGGCTGATGA+GGG + chr1_1:51744863-51744882 None:intergenic 55.0%
TGATCCAGGAGTGGCTGATG+AGG + chr1_1:51744864-51744883 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG + chr1_1:51744873-51744892 None:intergenic 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG + chr1_1:51744878-51744897 None:intergenic 55.0%
CCTGGATCAACACCTGCATC+AGG - chr1_1:51744875-51744894 Msa0027430:CDS 55.0%
ATCGACAGCTGCGTCAGGAT+TGG - chr1_1:51744936-51744955 Msa0027430:CDS 55.0%
ACCTCCGGCGGTTACAAATG+CGG - chr1_1:51743163-51743182 Msa0027430:three_prime_UTR 55.0%
TTCGCCGCATTTGTAACCGC+CGG + chr1_1:51743170-51743189 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG - chr1_1:51743170-51743189 Msa0027430:three_prime_UTR 55.0%
CTTCTAACCGGATCTCGCAC+CGG + chr1_1:51743249-51743268 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG + chr1_1:51743274-51743293 None:intergenic 55.0%
ACACGCAGCGAAGAGATCAC+CGG + chr1_1:51743281-51743300 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG - chr1_1:51743303-51743322 Msa0027430:intron 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG - chr1_1:51743304-51743323 Msa0027430:intron 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG - chr1_1:51743404-51743423 Msa0027430:intron 55.0%
AATGTCAAGCACAAGGCGGC+TGG - chr1_1:51744176-51744195 Msa0027430:intron 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG - chr1_1:51744211-51744230 Msa0027430:intron 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG - chr1_1:51744212-51744231 Msa0027430:intron 55.0%
ATTGAACCTTGCTCCCCCAC+CGG - chr1_1:51744265-51744284 Msa0027430:intron 55.0%
! TGATTTTCCCTGCACCCGGT+GGG + chr1_1:51744283-51744302 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG + chr1_1:51744317-51744336 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG + chr1_1:51744323-51744342 None:intergenic 55.0%
CGAGCAGCAACCGGATCATT+TGG + chr1_1:51744326-51744345 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG + chr1_1:51744335-51744354 None:intergenic 55.0%
GCTGCTCGGATTGCTTCTAC+CGG - chr1_1:51744338-51744357 Msa0027430:intron 55.0%
GATCCAGGAGTGGCTGATGA+GGG + chr1_1:51744863-51744882 None:intergenic 55.0%
TGATCCAGGAGTGGCTGATG+AGG + chr1_1:51744864-51744883 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG + chr1_1:51744873-51744892 None:intergenic 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG + chr1_1:51744878-51744897 None:intergenic 55.0%
CCTGGATCAACACCTGCATC+AGG - chr1_1:51744875-51744894 Msa0027430:CDS 55.0%
ATCGACAGCTGCGTCAGGAT+TGG - chr1_1:51744936-51744955 Msa0027430:CDS 55.0%
TCGCGGCGGGATCTTGTAGA+CGG + chr1_1:51743140-51743159 None:intergenic 60.0%
TAACCGCCGGAGGTTGTTCG+CGG + chr1_1:51743157-51743176 None:intergenic 60.0%
AACCGAACCCTCACGCTGAC+CGG + chr1_1:51743314-51743333 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG - chr1_1:51743318-51743337 Msa0027430:intron 60.0%
! GTCTGGTGATGCTGATGCCG+CGG - chr1_1:51743498-51743517 Msa0027430:intron 60.0%
GCTGGCATGCTTTCAGCTGC+TGG - chr1_1:51744203-51744222 Msa0027430:intron 60.0%
TTGAACCTTGCTCCCCCACC+GGG - chr1_1:51744266-51744285 Msa0027430:intron 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG + chr1_1:51744281-51744300 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG + chr1_1:51744282-51744301 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG + chr1_1:51744284-51744303 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG - chr1_1:51744857-51744876 Msa0027430:CDS 60.0%
AAGGCTGCCCATCCTGATGC+AGG + chr1_1:51744890-51744909 None:intergenic 60.0%
CGCAGCTGTCGATCCAAGAG+TGG + chr1_1:51744929-51744948 None:intergenic 60.0%
CTTGGATCGACAGCTGCGTC+AGG - chr1_1:51744931-51744950 Msa0027430:CDS 60.0%
TCGCGGCGGGATCTTGTAGA+CGG + chr1_1:51743140-51743159 None:intergenic 60.0%
TAACCGCCGGAGGTTGTTCG+CGG + chr1_1:51743157-51743176 None:intergenic 60.0%
AACCGAACCCTCACGCTGAC+CGG + chr1_1:51743314-51743333 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG - chr1_1:51743318-51743337 Msa0027430:intron 60.0%
! GTCTGGTGATGCTGATGCCG+CGG - chr1_1:51743498-51743517 Msa0027430:intron 60.0%
GCTGGCATGCTTTCAGCTGC+TGG - chr1_1:51744203-51744222 Msa0027430:intron 60.0%
TTGAACCTTGCTCCCCCACC+GGG - chr1_1:51744266-51744285 Msa0027430:intron 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG + chr1_1:51744281-51744300 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG + chr1_1:51744282-51744301 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG + chr1_1:51744284-51744303 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG - chr1_1:51744857-51744876 Msa0027430:CDS 60.0%
AAGGCTGCCCATCCTGATGC+AGG + chr1_1:51744890-51744909 None:intergenic 60.0%
CGCAGCTGTCGATCCAAGAG+TGG + chr1_1:51744929-51744948 None:intergenic 60.0%
CTTGGATCGACAGCTGCGTC+AGG - chr1_1:51744931-51744950 Msa0027430:CDS 60.0%
! CGCGAACGACGAGGAGTGTG+TGG + chr1_1:51743111-51743130 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG - chr1_1:51743148-51743167 Msa0027430:three_prime_UTR 65.0%
GCCGCATTTGTAACCGCCGG+AGG + chr1_1:51743167-51743186 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG + chr1_1:51743218-51743237 None:intergenic 65.0%
GGCGAGATACGACGCGGAGA+CGG + chr1_1:51743222-51743241 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG + chr1_1:51743228-51743247 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG - chr1_1:51743227-51743246 Msa0027430:exon 65.0%
! ACCGGATCTCGCACCGGTCA+CGG + chr1_1:51743243-51743262 None:intergenic 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG - chr1_1:51743309-51743328 Msa0027430:intron 65.0%
ACCGAACCCTCACGCTGACC+GGG + chr1_1:51743313-51743332 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG - chr1_1:51743501-51743520 Msa0027430:intron 65.0%
GTCAAGCACAAGGCGGCTGG+TGG - chr1_1:51744179-51744198 Msa0027430:intron 65.0%
! CGCGAACGACGAGGAGTGTG+TGG + chr1_1:51743111-51743130 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG - chr1_1:51743148-51743167 Msa0027430:three_prime_UTR 65.0%
GCCGCATTTGTAACCGCCGG+AGG + chr1_1:51743167-51743186 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG + chr1_1:51743218-51743237 None:intergenic 65.0%
GGCGAGATACGACGCGGAGA+CGG + chr1_1:51743222-51743241 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG + chr1_1:51743228-51743247 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG - chr1_1:51743227-51743246 Msa0027430:exon 65.0%
! ACCGGATCTCGCACCGGTCA+CGG + chr1_1:51743243-51743262 None:intergenic 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG - chr1_1:51743309-51743328 Msa0027430:intron 65.0%
ACCGAACCCTCACGCTGACC+GGG + chr1_1:51743313-51743332 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG - chr1_1:51743501-51743520 Msa0027430:intron 65.0%
GTCAAGCACAAGGCGGCTGG+TGG - chr1_1:51744179-51744198 Msa0027430:intron 65.0%
CGGCGACTTCGCGAACGACG+AGG + chr1_1:51743120-51743139 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG - chr1_1:51743239-51743258 Msa0027430:CDS 70.0%
CACAAGGCGGCTGGTGGAGC+TGG - chr1_1:51744185-51744204 Msa0027430:intron 70.0%
TTGCTCCCCCACCGGGTGCA+GGG - chr1_1:51744273-51744292 Msa0027430:intron 70.0%
CGGCGACTTCGCGAACGACG+AGG + chr1_1:51743120-51743139 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG - chr1_1:51743239-51743258 Msa0027430:CDS 70.0%
CACAAGGCGGCTGGTGGAGC+TGG - chr1_1:51744185-51744204 Msa0027430:intron 70.0%
TTGCTCCCCCACCGGGTGCA+GGG - chr1_1:51744273-51744292 Msa0027430:intron 70.0%
CGCCGGAGGTTGTTCGCGGC+GGG + chr1_1:51743153-51743172 None:intergenic 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG + chr1_1:51743154-51743173 None:intergenic 75.0%
CCGCCGCGAACAACCTCCGG+CGG - chr1_1:51743151-51743170 Msa0027430:three_prime_UTR 75.0%
CTGCACCCGGTGGGGGAGCA+AGG + chr1_1:51744274-51744293 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG - chr1_1:51744272-51744291 Msa0027430:intron 75.0%
CGCCGGAGGTTGTTCGCGGC+GGG + chr1_1:51743153-51743172 None:intergenic 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG + chr1_1:51743154-51743173 None:intergenic 75.0%
CCGCCGCGAACAACCTCCGG+CGG - chr1_1:51743151-51743170 Msa0027430:three_prime_UTR 75.0%
CTGCACCCGGTGGGGGAGCA+AGG + chr1_1:51744274-51744293 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG - chr1_1:51744272-51744291 Msa0027430:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51742888 51745253 51742888 ID=Msa0027430;Name=Msa0027430
chr1_1 mRNA 51742888 51745253 51742888 ID=Msa0027430-mRNA-1;Parent=Msa0027430;Name=Msa0027430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=188|1|1|1|1|1|3|340|279
chr1_1 exon 51742888 51743290 51742888 ID=Msa0027430-mRNA-1:exon:15194;Parent=Msa0027430-mRNA-1
chr1_1 exon 51743702 51743986 51743702 ID=Msa0027430-mRNA-1:exon:15193;Parent=Msa0027430-mRNA-1
chr1_1 exon 51744574 51745253 51744574 ID=Msa0027430-mRNA-1:exon:15192;Parent=Msa0027430-mRNA-1
chr1_1 five_prime_UTR 51745066 51745253 51745066 ID=Msa0027430-mRNA-1:five_prime_utr;Parent=Msa0027430-mRNA-1
chr1_1 CDS 51744574 51745065 51744574 ID=Msa0027430-mRNA-1:cds;Parent=Msa0027430-mRNA-1
chr1_1 CDS 51743702 51743986 51743702 ID=Msa0027430-mRNA-1:cds;Parent=Msa0027430-mRNA-1
chr1_1 CDS 51743228 51743290 51743228 ID=Msa0027430-mRNA-1:cds;Parent=Msa0027430-mRNA-1
chr1_1 three_prime_UTR 51742888 51743227 51742888 ID=Msa0027430-mRNA-1:three_prime_utr;Parent=Msa0027430-mRNA-1
Gene Sequence

>Msa0027430

ATGTCGTTAGAAGAAGAAGAAGAGGGCTTCGACCACACACTCCTCGTCGTTCGCGAAGTCGCCGTCTACAAGATCCCGCCGCGAACAACCTCCGGCGGTTACAAATGCGGCGAATGGCTCCAATCAGACAAGATCTGGTCCGGCCGTCTCCGCGTCGTATCTCGCCGTGACCGGTGCGAGATCCGGTTAGAAGATCCTAACTCCGGTGATCTCTTCGCTGCGTGTTTTGTTTTTCCCGGTCAGCGTGAGGGTTCGGTTGAACCGGTTCTCGATTCGTCGAGATATTTTGTTCTGAAGATTGAAGATGGACAAGGGAAGCATGCGTTTATTGGATTGGGGTTTGCGGAGAGGAATGAAGCTTTTGATTTCAATGTTGCACTTTCTGATCATGAGAAGTATGTGAGAAGAGAACATGATAAGGAGTCTGGTGATGCTGATGCCGCGGAGGATTCACAGATCGATATTCATCCTGCTGTTAATCATAGGCTTAAGGAGGGAGAAACCATCAGGATTAATGTCAAGCACAAGGCGGCTGGTGGAGCTGGCATGCTTTCAGCTGCTGGCCTATCGGGTGTGCATGTAGCAACACCGAAGCCAAAAGTATTGAACCTTGCTCCCCCACCGGGTGCAGGGAAAATCAGATCCGCTCTTCCACTCCCACCAAATGATCCGGTTGCTGCTCGGATTGCTTCTACCGGTCCTGTATCTAGTGTTAAAGGGACAAAAGAAGGTGTGAAACAGTCTACTGATTCTCTATCGGATCTTTCTCAATTACAGAAAAATCTTCCCTCATCAGCCACTCCTGGATCAACACCTGCATCAGGATGGGCAGCCTTCTGA
Protein sequence

>Msa0027430

MSLEEEEEGFDHTLLVVREVAVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGDADAAEDSQIDIHPAVNHRLKEGETIRINVKHKAAGGAGMLSAAGLSGVHVATPKPKVLNLAPPPGAGKIRSALPLPPNDPVAARIASTGPVSSVKGTKEGVKQSTDSLSDLSQLQKNLPSSATPGSTPASGWAAF*