AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165340 MtrunA17_Chr1g0183691 99.283 279 2 0 1 279 1 279 0.0 567
Msa0165340 MtrunA17_Chr2g0325501 43.017 179 92 3 5 180 18 189 1.76e-41 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165340 AT1G03900.1 70.545 275 62 6 10 279 12 272 1.01e-118 341
Msa0165340 AT3G58600.1 43.575 179 85 4 5 177 27 195 7.67e-40 140

Find 115 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTCTCTGATTTATTT+TGG 0.077754 1_4:-45794223 Msa0165340:three_prime_UTR
CAAGGGAAGCATGCGTTTAT+TGG 0.243287 1_4:-45795841 Msa0165340:CDS
GCTGGCATGCTTTCAGCTGC+TGG 0.245848 1_4:-45795023 Msa0165340:CDS
ATCGGATCTTTCTCAATTAC+AGG 0.250114 1_4:-45794808 Msa0165340:intron
GAATTTGAGAAACGCGTTAT+TGG 0.257049 1_4:+45796228 None:intergenic
GGTCCTGTATCTAGTGTTAA+AGG 0.284346 1_4:-45794867 Msa0165340:CDS
GGAGCAAGGTTCAATACTTT+TGG 0.310945 1_4:+45794969 None:intergenic
TTCTTCTAACGACATCGTTT+TGG 0.328092 1_4:+45796158 None:intergenic
TTGGGAGAGATCAAGGGATT+GGG 0.335083 1_4:+45794026 None:intergenic
AAGCATGCGTTTATTGGATT+GGG 0.336786 1_4:-45795835 Msa0165340:CDS
CACAAGGCGGCTGGTGGAGC+TGG 0.355323 1_4:-45795041 Msa0165340:CDS
GCCGTGACCGGTGCGAGATC+CGG 0.369388 1_4:-45795987 Msa0165340:CDS
GCGAAGAGATCACCGGAGTT+AGG 0.375730 1_4:+45795955 None:intergenic
GCTTTCAGCTGCTGGCCTAT+CGG 0.386640 1_4:-45795015 Msa0165340:CDS
CTTTCAGCTGCTGGCCTATC+GGG 0.396419 1_4:-45795014 Msa0165340:CDS
TCCCGGTCAGCGTGAGGGTT+CGG 0.398042 1_4:-45795917 Msa0165340:CDS
CGAGCAGCAACCGGATCATT+TGG 0.402087 1_4:+45794903 None:intergenic
TTCATCCTGCTGTTAATCAT+AGG 0.414816 1_4:-45795687 Msa0165340:CDS
TGCTGTTAATCATAGGCTTA+AGG 0.419472 1_4:-45795680 Msa0165340:intron
AACCGAACCCTCACGCTGAC+CGG 0.428541 1_4:+45795915 None:intergenic
CTTCCCTCATCAGCCACTCC+TGG 0.429001 1_4:-45794369 Msa0165340:CDS
GTCCCTTTAACACTAGATAC+AGG 0.431990 1_4:+45794864 None:intergenic
GAAGCATGCGTTTATTGGAT+TGG 0.436801 1_4:-45795836 Msa0165340:CDS
GCGTGAGGGTTCGGTTGAAC+CGG 0.442496 1_4:-45795908 Msa0165340:CDS
TGTGAGAAGAGAACATGATA+AGG 0.442504 1_4:-45795752 Msa0165340:CDS
TTTGAGAAAAGAAATATTGA+AGG 0.443231 1_4:-45794189 Msa0165340:three_prime_UTR
GGCTCCAATCAGACAAGATC+TGG 0.444379 1_4:-45796035 Msa0165340:CDS
CTTGGATCGACAGCTGCGTC+AGG 0.445581 1_4:-45794295 Msa0165340:three_prime_UTR
ATAAAGATTGGGAGAGATCA+AGG 0.446692 1_4:+45794019 None:intergenic
ATCCCGCCGCGAACAACCTC+CGG 0.448428 1_4:-45796078 Msa0165340:CDS
TTTGTTCTGAAGATTGAAGA+TGG 0.449673 1_4:-45795865 Msa0165340:CDS
ACGCCACAGTCAATAAAGAT+TGG 0.451335 1_4:+45794007 None:intergenic
CCTGGATCAACACCTGCATC+AGG 0.454323 1_4:-45794351 Msa0165340:CDS
TGGGAGAGATCAAGGGATTG+GGG 0.455280 1_4:+45794027 None:intergenic
ATTATATATACAGCCACTCT+TGG 0.456768 1_4:-45794313 Msa0165340:three_prime_UTR
ATTGGGAGAGATCAAGGGAT+TGG 0.457400 1_4:+45794025 None:intergenic
GAGTTTGAGTTTAATGTGAA+TGG 0.458393 1_4:+45796201 None:intergenic
CGCCGGAGGTTGTTCGCGGC+GGG 0.458516 1_4:+45796076 None:intergenic
AGAGAACATGATAAGGAGTC+TGG 0.464167 1_4:-45795745 Msa0165340:CDS
AAGATAGTAGCAGAGCATAT+TGG 0.466472 1_4:-45796342 None:intergenic
CCTGATGCAGGTGTTGATCC+AGG 0.466664 1_4:+45794351 None:intergenic
GAAGCAATCCGAGCAGCAAC+CGG 0.468103 1_4:+45794894 None:intergenic
CGCCACAGTCAATAAAGATT+GGG 0.470327 1_4:+45794008 None:intergenic
ACCGGATCATTTGGTGGGAG+TGG 0.474405 1_4:+45794912 None:intergenic
GTGCTTGACATTAATCCTGA+TGG 0.479670 1_4:+45795061 None:intergenic
TCCACTCCCACCAAATGATC+CGG 0.488066 1_4:-45794913 Msa0165340:CDS
CGGAGTTAGGATCTTCTAAC+CGG 0.488892 1_4:+45795968 None:intergenic
TAACCGCCGGAGGTTGTTCG+CGG 0.489732 1_4:+45796072 None:intergenic
GCGTCGTATCTCGCCGTGAC+CGG 0.490086 1_4:-45795999 Msa0165340:CDS
TATCTCGACGAATCGAGAAC+CGG 0.491919 1_4:+45795889 None:intergenic
GTCCTGTATCTAGTGTTAAA+GGG 0.497916 1_4:-45794866 Msa0165340:CDS
CGGACCAGATCTTGTCTGAT+TGG 0.500982 1_4:+45796031 None:intergenic
ATCGACAGCTGCGTCAGGAT+TGG 0.502193 1_4:-45794290 Msa0165340:three_prime_UTR
GTTTATTGGATTGGGGTTTG+CGG 0.504982 1_4:-45795827 Msa0165340:CDS
ATACGAGTATCTTAACTAAG+AGG 0.506250 1_4:-45794250 Msa0165340:three_prime_UTR
CAATCAGACAAGATCTGGTC+CGG 0.507755 1_4:-45796030 Msa0165340:CDS
AGTGTTAAAGGGACAAAAGA+AGG 0.515401 1_4:-45794855 Msa0165340:CDS
ACCGGATCTCGCACCGGTCA+CGG 0.515952 1_4:+45795986 None:intergenic
AGATACGACGCGGAGACGGC+CGG 0.516487 1_4:+45796011 None:intergenic
AAGGCTGCCCATCCTGATGC+AGG 0.520170 1_4:+45794339 None:intergenic
GTCGTTAGAAGAAGAAGAAG+AGG 0.522046 1_4:-45796148 Msa0165340:CDS
TGATTGCTCGAGGAATGTCC+TGG 0.523604 1_4:-45794113 Msa0165340:three_prime_UTR
AATGTCAAGCACAAGGCGGC+TGG 0.531510 1_4:-45795050 Msa0165340:CDS
ACCGAACCCTCACGCTGACC+GGG 0.532951 1_4:+45795916 None:intergenic
TTGAAGGAAGCTGAAGAAAG+AGG 0.533212 1_4:-45794173 Msa0165340:three_prime_UTR
TGTAGGAGGGAGAAACCATC+AGG 0.535611 1_4:-45795076 Msa0165340:intron
TCTCCTAAAACAGTTGACCT+TGG 0.544438 1_4:-45796296 Msa0165340:five_prime_UTR
GTCAAGCACAAGGCGGCTGG+TGG 0.546548 1_4:-45795047 Msa0165340:CDS
CAAATGATCCGGTTGCTGCT+CGG 0.548131 1_4:-45794902 Msa0165340:CDS
CTGAAGATTGAAGATGGACA+AGG 0.551166 1_4:-45795859 Msa0165340:CDS
GCTGCTCGGATTGCTTCTAC+CGG 0.551616 1_4:-45794888 Msa0165340:CDS
AGCATGCGTTTATTGGATTG+GGG 0.552301 1_4:-45795834 Msa0165340:CDS
TTCGCCGCATTTGTAACCGC+CGG 0.553188 1_4:+45796059 None:intergenic
ACAGTCTACTGATTCTCTAT+CGG 0.561613 1_4:-45794826 Msa0165340:CDS
GTCATAAGTATAGTTAGCGC+AGG 0.564945 1_4:-45794149 Msa0165340:three_prime_UTR
CTCCCAATCTTTATTGACTG+TGG 0.565157 1_4:-45794010 Msa0165340:three_prime_UTR
GATCAACACCTGCATCAGGA+TGG 0.567922 1_4:-45794347 Msa0165340:CDS
TTGAGTAATTTGATTGCTCG+AGG 0.568756 1_4:-45794123 Msa0165340:three_prime_UTR
CGCAGCTGTCGATCCAAGAG+TGG 0.568796 1_4:+45794300 None:intergenic
TTGGATTGGGGTTTGCGGAG+AGG 0.569343 1_4:-45795822 Msa0165340:CDS
ATCAACACCTGCATCAGGAT+GGG 0.573253 1_4:-45794346 Msa0165340:CDS
CTTCTAACCGGATCTCGCAC+CGG 0.574822 1_4:+45795980 None:intergenic
CCGCCGGAGGTTGTTCGCGG+CGG 0.582317 1_4:+45796075 None:intergenic
GGCGAGATACGACGCGGAGA+CGG 0.582763 1_4:+45796007 None:intergenic
GCAGCAACCGGATCATTTGG+TGG 0.583616 1_4:+45794906 None:intergenic
GCGGTTACAAATGCGGCGAA+TGG 0.584085 1_4:-45796056 Msa0165340:CDS
TTGCTACATGCACACCCGAT+AGG 0.586697 1_4:+45795000 None:intergenic
TCGCGGCGGGATCTTGTAGA+CGG 0.592219 1_4:+45796089 None:intergenic
GCCGCATTTGTAACCGCCGG+AGG 0.596884 1_4:+45796062 None:intergenic
TTAAGCCTATGATTAACAGC+AGG 0.600310 1_4:+45795682 None:intergenic
TGGCTGTATATATAATCAGA+AGG 0.603345 1_4:+45794320 None:intergenic
ACCTCCGGCGGTTACAAATG+CGG 0.604789 1_4:-45796063 Msa0165340:CDS
TACTCGTATATATAATCAGA+AGG 0.605799 1_4:+45794264 None:intergenic
TGATCCAGGAGTGGCTGATG+AGG 0.607039 1_4:+45794365 None:intergenic
GTCTGGTGATGCTGATGCCG+CGG 0.607238 1_4:-45795728 Msa0165340:CDS
CGCGAACGACGAGGAGTGTG+TGG 0.610612 1_4:+45796118 None:intergenic
CAGCAACCGGATCATTTGGT+GGG 0.614621 1_4:+45794907 None:intergenic
CAGGATTAATGTCAAGCACA+AGG 0.616170 1_4:-45795057 Msa0165340:CDS
AAACATGTTATTACAAACCA+AGG 0.618335 1_4:+45794074 None:intergenic
TAAAGATTGGGAGAGATCAA+GGG 0.622275 1_4:+45794020 None:intergenic
TGAGAAACGCGTTATTGGTG+TGG 0.623056 1_4:+45796233 None:intergenic
CGGTTAGAAGATCCTAACTC+CGG 0.634275 1_4:-45795967 Msa0165340:CDS
ACACGCAGCGAAGAGATCAC+CGG 0.637569 1_4:+45795948 None:intergenic
TTTAACACTAGATACAGGAC+CGG 0.645020 1_4:+45794869 None:intergenic
CGGCGACTTCGCGAACGACG+AGG 0.648082 1_4:+45796109 None:intergenic
ATTTGGTGGGAGTGGAAGAG+CGG 0.652140 1_4:+45794920 None:intergenic
TGCAGGTGTTGATCCAGGAG+TGG 0.652617 1_4:+45794356 None:intergenic
TGAAGATTGAAGATGGACAA+GGG 0.659170 1_4:-45795858 Msa0165340:CDS
GATCCAGGAGTGGCTGATGA+GGG 0.665742 1_4:+45794366 None:intergenic
TGGTGATGCTGATGCCGCGG+AGG 0.679687 1_4:-45795725 Msa0165340:CDS
CCGCCGCGAACAACCTCCGG+CGG 0.687466 1_4:-45796075 Msa0165340:CDS
ATCGATCTGTGAATCCTCCG+CGG 0.729159 1_4:+45795711 None:intergenic
GATTAATGTCAAGCACAAGG+CGG 0.745005 1_4:-45795054 Msa0165340:CDS
CAAACACAAAGACAACACCA+AGG 0.791676 1_4:+45796279 None:intergenic
GGTCACGGCGAGATACGACG+CGG 0.826251 1_4:+45796001 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGTTTTTTGTGTATTTT+TGG - chr1_4:45794825-45794844 Msa0165340:CDS 15.0%
!!! TATTATTCTCTGATTTATTT+TGG - chr1_4:45796110-45796129 Msa0165340:CDS 15.0%
!!! ATTATTCTCTGATTTATTTT+GGG - chr1_4:45796111-45796130 Msa0165340:CDS 15.0%
!!! ATTAGTTTTTTGTGTATTTT+TGG - chr1_4:45794825-45794844 Msa0165340:CDS 15.0%
!!! TATTATTCTCTGATTTATTT+TGG - chr1_4:45796110-45796129 Msa0165340:CDS 15.0%
!!! ATTATTCTCTGATTTATTTT+GGG - chr1_4:45796111-45796130 Msa0165340:CDS 15.0%
!!! TGAACTTTAATTTATTGTAG+CGG - chr1_4:45794729-45794748 Msa0165340:intron 20.0%
!! TTATGATATAATGATGATCA+TGG - chr1_4:45794910-45794929 Msa0165340:CDS 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG + chr1_4:45795150-45795169 None:intergenic 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG + chr1_4:45795151-45795170 None:intergenic 20.0%
!! ACAATATAGAGAAATTAAAC+TGG + chr1_4:45795878-45795897 None:intergenic 20.0%
!!! TTATTCTCTGATTTATTTTG+GGG - chr1_4:45796112-45796131 Msa0165340:CDS 20.0%
!! TTTGAGAAAAGAAATATTGA+AGG - chr1_4:45796144-45796163 Msa0165340:CDS 20.0%
!!! TGAACTTTAATTTATTGTAG+CGG - chr1_4:45794729-45794748 Msa0165340:intron 20.0%
!! TTATGATATAATGATGATCA+TGG - chr1_4:45794910-45794929 Msa0165340:CDS 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG + chr1_4:45795150-45795169 None:intergenic 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG + chr1_4:45795151-45795170 None:intergenic 20.0%
!! ACAATATAGAGAAATTAAAC+TGG + chr1_4:45795878-45795897 None:intergenic 20.0%
!!! TTATTCTCTGATTTATTTTG+GGG - chr1_4:45796112-45796131 Msa0165340:CDS 20.0%
!! TTTGAGAAAAGAAATATTGA+AGG - chr1_4:45796144-45796163 Msa0165340:CDS 20.0%
!!! TTCTCCAATGTTTTAAATCA+TGG - chr1_4:45794999-45795018 Msa0165340:CDS 25.0%
!! ACAACCATGATTTAAAACAT+TGG + chr1_4:45795006-45795025 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG - chr1_4:45795005-45795024 Msa0165340:CDS 25.0%
! AAAACCATGTTTACAAATCA+CGG - chr1_4:45795156-45795175 Msa0165340:intron 25.0%
! AAAACAAATGAAGTGGAAAT+AGG + chr1_4:45795584-45795603 None:intergenic 25.0%
! TATATGCATAAACAAAGCAA+TGG + chr1_4:45795787-45795806 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG - chr1_4:45795823-45795842 Msa0165340:CDS 25.0%
! ATTCATATTAAACAGTGTCT+GGG + chr1_4:45795907-45795926 None:intergenic 25.0%
! TACTCGTATATATAATCAGA+AGG + chr1_4:45796072-45796091 None:intergenic 25.0%
!!! TATTCTCTGATTTATTTTGG+GGG - chr1_4:45796113-45796132 Msa0165340:CDS 25.0%
!! GAAATATTGATGTTTTTCCT+TGG - chr1_4:45796242-45796261 Msa0165340:five_prime_UTR 25.0%
! AAACATGTTATTACAAACCA+AGG + chr1_4:45796262-45796281 None:intergenic 25.0%
!!! TTCTCCAATGTTTTAAATCA+TGG - chr1_4:45794999-45795018 Msa0165340:CDS 25.0%
!! ACAACCATGATTTAAAACAT+TGG + chr1_4:45795006-45795025 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG - chr1_4:45795005-45795024 Msa0165340:CDS 25.0%
! AAAACCATGTTTACAAATCA+CGG - chr1_4:45795156-45795175 Msa0165340:intron 25.0%
! AAAACAAATGAAGTGGAAAT+AGG + chr1_4:45795584-45795603 None:intergenic 25.0%
! TATATGCATAAACAAAGCAA+TGG + chr1_4:45795787-45795806 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG - chr1_4:45795823-45795842 Msa0165340:CDS 25.0%
! ATTCATATTAAACAGTGTCT+GGG + chr1_4:45795907-45795926 None:intergenic 25.0%
! TACTCGTATATATAATCAGA+AGG + chr1_4:45796072-45796091 None:intergenic 25.0%
!!! TATTCTCTGATTTATTTTGG+GGG - chr1_4:45796113-45796132 Msa0165340:CDS 25.0%
!! GAAATATTGATGTTTTTCCT+TGG - chr1_4:45796242-45796261 Msa0165340:five_prime_UTR 25.0%
! AAACATGTTATTACAAACCA+AGG + chr1_4:45796262-45796281 None:intergenic 25.0%
! GAGTTTGAGTTTAATGTGAA+TGG + chr1_4:45794135-45794154 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG - chr1_4:45794468-45794487 Msa0165340:intron 30.0%
!! TGATCACACAAATTTGCTAA+TGG + chr1_4:45794685-45794704 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG - chr1_4:45794844-45794863 Msa0165340:CDS 30.0%
ATTTGGGCAAAAAATAACCT+CGG + chr1_4:45794944-45794963 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG + chr1_4:45794967-45794986 None:intergenic 30.0%
AGTCACTATTGAGATTACAT+TGG + chr1_4:45795077-45795096 None:intergenic 30.0%
TCGACAAATACTTCAAACAT+AGG + chr1_4:45795231-45795250 None:intergenic 30.0%
! TGTTTGAAGTATTTGTCGAT+TGG - chr1_4:45795232-45795251 Msa0165340:intron 30.0%
AAATGAAGTGGAAATAGGAA+AGG + chr1_4:45795579-45795598 None:intergenic 30.0%
GATTGCAAAAACAAATGAAG+TGG + chr1_4:45795591-45795610 None:intergenic 30.0%
AGAACTTGCAAATTATTGCA+TGG - chr1_4:45795620-45795639 Msa0165340:intron 30.0%
CATAATCTTAGATAGGTACA+CGG + chr1_4:45795713-45795732 None:intergenic 30.0%
AGCATAGCATAATCTTAGAT+AGG + chr1_4:45795720-45795739 None:intergenic 30.0%
GATTCATATTAAACAGTGTC+TGG + chr1_4:45795908-45795927 None:intergenic 30.0%
TGGCTGTATATATAATCAGA+AGG + chr1_4:45796016-45796035 None:intergenic 30.0%
ATTATATATACAGCCACTCT+TGG - chr1_4:45796020-45796039 Msa0165340:CDS 30.0%
ATACGAGTATCTTAACTAAG+AGG - chr1_4:45796083-45796102 Msa0165340:CDS 30.0%
GGAAAAACATCAATATTTCC+AGG + chr1_4:45796241-45796260 None:intergenic 30.0%
! GAGTTTGAGTTTAATGTGAA+TGG + chr1_4:45794135-45794154 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG - chr1_4:45794468-45794487 Msa0165340:intron 30.0%
!! TGATCACACAAATTTGCTAA+TGG + chr1_4:45794685-45794704 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG - chr1_4:45794844-45794863 Msa0165340:CDS 30.0%
ATTTGGGCAAAAAATAACCT+CGG + chr1_4:45794944-45794963 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG + chr1_4:45794967-45794986 None:intergenic 30.0%
AGTCACTATTGAGATTACAT+TGG + chr1_4:45795077-45795096 None:intergenic 30.0%
TCGACAAATACTTCAAACAT+AGG + chr1_4:45795231-45795250 None:intergenic 30.0%
! TGTTTGAAGTATTTGTCGAT+TGG - chr1_4:45795232-45795251 Msa0165340:intron 30.0%
AAATGAAGTGGAAATAGGAA+AGG + chr1_4:45795579-45795598 None:intergenic 30.0%
GATTGCAAAAACAAATGAAG+TGG + chr1_4:45795591-45795610 None:intergenic 30.0%
AGAACTTGCAAATTATTGCA+TGG - chr1_4:45795620-45795639 Msa0165340:intron 30.0%
CATAATCTTAGATAGGTACA+CGG + chr1_4:45795713-45795732 None:intergenic 30.0%
AGCATAGCATAATCTTAGAT+AGG + chr1_4:45795720-45795739 None:intergenic 30.0%
GATTCATATTAAACAGTGTC+TGG + chr1_4:45795908-45795927 None:intergenic 30.0%
TGGCTGTATATATAATCAGA+AGG + chr1_4:45796016-45796035 None:intergenic 30.0%
ATTATATATACAGCCACTCT+TGG - chr1_4:45796020-45796039 Msa0165340:CDS 30.0%
ATACGAGTATCTTAACTAAG+AGG - chr1_4:45796083-45796102 Msa0165340:CDS 30.0%
GGAAAAACATCAATATTTCC+AGG + chr1_4:45796241-45796260 None:intergenic 30.0%
GAATTTGAGAAACGCGTTAT+TGG + chr1_4:45794108-45794127 None:intergenic 35.0%
! TTCTTCTAACGACATCGTTT+TGG + chr1_4:45794178-45794197 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG - chr1_4:45794186-45794205 Msa0165340:three_prime_UTR 35.0%
TGAAGATTGAAGATGGACAA+GGG - chr1_4:45794475-45794494 Msa0165340:intron 35.0%
AAGCATGCGTTTATTGGATT+GGG - chr1_4:45794498-45794517 Msa0165340:intron 35.0%
TGTGAGAAGAGAACATGATA+AGG - chr1_4:45794581-45794600 Msa0165340:intron 35.0%
TTCATCCTGCTGTTAATCAT+AGG - chr1_4:45794646-45794665 Msa0165340:intron 35.0%
TTAAGCCTATGATTAACAGC+AGG + chr1_4:45794654-45794673 None:intergenic 35.0%
TGCTGTTAATCATAGGCTTA+AGG - chr1_4:45794653-45794672 Msa0165340:intron 35.0%
CTACTCTAAACATCGGATTT+GGG + chr1_4:45794960-45794979 None:intergenic 35.0%
ACTACTCTAAACATCGGATT+TGG + chr1_4:45794961-45794980 None:intergenic 35.0%
! TTGCTATTGCAAATGATCGT+GGG - chr1_4:45795042-45795061 Msa0165340:CDS 35.0%
TAAAAAAGGGTTTGCGATCT+GGG + chr1_4:45795137-45795156 None:intergenic 35.0%
TTAAAAAAGGGTTTGCGATC+TGG + chr1_4:45795138-45795157 None:intergenic 35.0%
! AAGACCGTGATTTGTAAACA+TGG + chr1_4:45795163-45795182 None:intergenic 35.0%
CTTCAAACATAGGATAAGCA+AGG + chr1_4:45795221-45795240 None:intergenic 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG + chr1_4:45795361-45795380 None:intergenic 35.0%
TTTAACACTAGATACAGGAC+CGG + chr1_4:45795467-45795486 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG - chr1_4:45795467-45795486 Msa0165340:intron 35.0%
AGTGTTAAAGGGACAAAAGA+AGG - chr1_4:45795478-45795497 Msa0165340:intron 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG - chr1_4:45795507-45795526 Msa0165340:intron 35.0%
ATCGGATCTTTCTCAATTAC+AGG - chr1_4:45795525-45795544 Msa0165340:intron 35.0%
TTTCTCAATTACAGGTATGC+TGG - chr1_4:45795533-45795552 Msa0165340:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG - chr1_4:45795625-45795644 Msa0165340:intron 35.0%
TTGAGTAATTTGATTGCTCG+AGG - chr1_4:45796210-45796229 Msa0165340:five_prime_UTR 35.0%
TAAAGATTGGGAGAGATCAA+GGG + chr1_4:45796316-45796335 None:intergenic 35.0%
ATAAAGATTGGGAGAGATCA+AGG + chr1_4:45796317-45796336 None:intergenic 35.0%
GAATTTGAGAAACGCGTTAT+TGG + chr1_4:45794108-45794127 None:intergenic 35.0%
! TTCTTCTAACGACATCGTTT+TGG + chr1_4:45794178-45794197 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG - chr1_4:45794186-45794205 Msa0165340:three_prime_UTR 35.0%
TGAAGATTGAAGATGGACAA+GGG - chr1_4:45794475-45794494 Msa0165340:intron 35.0%
AAGCATGCGTTTATTGGATT+GGG - chr1_4:45794498-45794517 Msa0165340:intron 35.0%
TGTGAGAAGAGAACATGATA+AGG - chr1_4:45794581-45794600 Msa0165340:intron 35.0%
TTCATCCTGCTGTTAATCAT+AGG - chr1_4:45794646-45794665 Msa0165340:intron 35.0%
TTAAGCCTATGATTAACAGC+AGG + chr1_4:45794654-45794673 None:intergenic 35.0%
TGCTGTTAATCATAGGCTTA+AGG - chr1_4:45794653-45794672 Msa0165340:intron 35.0%
CTACTCTAAACATCGGATTT+GGG + chr1_4:45794960-45794979 None:intergenic 35.0%
ACTACTCTAAACATCGGATT+TGG + chr1_4:45794961-45794980 None:intergenic 35.0%
! TTGCTATTGCAAATGATCGT+GGG - chr1_4:45795042-45795061 Msa0165340:CDS 35.0%
TAAAAAAGGGTTTGCGATCT+GGG + chr1_4:45795137-45795156 None:intergenic 35.0%
TTAAAAAAGGGTTTGCGATC+TGG + chr1_4:45795138-45795157 None:intergenic 35.0%
! AAGACCGTGATTTGTAAACA+TGG + chr1_4:45795163-45795182 None:intergenic 35.0%
CTTCAAACATAGGATAAGCA+AGG + chr1_4:45795221-45795240 None:intergenic 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG + chr1_4:45795361-45795380 None:intergenic 35.0%
TTTAACACTAGATACAGGAC+CGG + chr1_4:45795467-45795486 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG - chr1_4:45795467-45795486 Msa0165340:intron 35.0%
AGTGTTAAAGGGACAAAAGA+AGG - chr1_4:45795478-45795497 Msa0165340:intron 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG - chr1_4:45795507-45795526 Msa0165340:intron 35.0%
ATCGGATCTTTCTCAATTAC+AGG - chr1_4:45795525-45795544 Msa0165340:intron 35.0%
TTTCTCAATTACAGGTATGC+TGG - chr1_4:45795533-45795552 Msa0165340:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG - chr1_4:45795625-45795644 Msa0165340:intron 35.0%
TTGAGTAATTTGATTGCTCG+AGG - chr1_4:45796210-45796229 Msa0165340:five_prime_UTR 35.0%
TAAAGATTGGGAGAGATCAA+GGG + chr1_4:45796316-45796335 None:intergenic 35.0%
ATAAAGATTGGGAGAGATCA+AGG + chr1_4:45796317-45796336 None:intergenic 35.0%
TCTCCTAAAACAGTTGACCT+TGG - chr1_4:45794037-45794056 Msa0165340:three_prime_UTR 40.0%
! ACACCAAGGTCAACTGTTTT+AGG + chr1_4:45794043-45794062 None:intergenic 40.0%
CAAACACAAAGACAACACCA+AGG + chr1_4:45794057-45794076 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG - chr1_4:45794185-45794204 Msa0165340:three_prime_UTR 40.0%
CTGAAGATTGAAGATGGACA+AGG - chr1_4:45794474-45794493 Msa0165340:intron 40.0%
GAAGCATGCGTTTATTGGAT+TGG - chr1_4:45794497-45794516 Msa0165340:intron 40.0%
AGCATGCGTTTATTGGATTG+GGG - chr1_4:45794499-45794518 Msa0165340:intron 40.0%
! GTTTATTGGATTGGGGTTTG+CGG - chr1_4:45794506-45794525 Msa0165340:intron 40.0%
AGAGAACATGATAAGGAGTC+TGG - chr1_4:45794588-45794607 Msa0165340:intron 40.0%
! GTTGCTATTGCAAATGATCG+TGG - chr1_4:45795041-45795060 Msa0165340:CDS 40.0%
GTGCTTGACATTAATCCTGA+TGG + chr1_4:45795275-45795294 None:intergenic 40.0%
CAGGATTAATGTCAAGCACA+AGG - chr1_4:45795276-45795295 Msa0165340:intron 40.0%
GATTAATGTCAAGCACAAGG+CGG - chr1_4:45795279-45795298 Msa0165340:intron 40.0%
! GGAGCAAGGTTCAATACTTT+TGG + chr1_4:45795367-45795386 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG - chr1_4:45795466-45795485 Msa0165340:intron 40.0%
GTCCCTTTAACACTAGATAC+AGG + chr1_4:45795472-45795491 None:intergenic 40.0%
GGAAATAGGAAAGGCTCTTA+AGG + chr1_4:45795570-45795589 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG - chr1_4:45795624-45795643 Msa0165340:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG + chr1_4:45795859-45795878 None:intergenic 40.0%
TTGAAGGAAGCTGAAGAAAG+AGG - chr1_4:45796160-45796179 Msa0165340:exon 40.0%
GTCATAAGTATAGTTAGCGC+AGG - chr1_4:45796184-45796203 Msa0165340:five_prime_UTR 40.0%
! CTCCCAATCTTTATTGACTG+TGG - chr1_4:45796323-45796342 Msa0165340:five_prime_UTR 40.0%
CGCCACAGTCAATAAAGATT+GGG + chr1_4:45796328-45796347 None:intergenic 40.0%
ACGCCACAGTCAATAAAGAT+TGG + chr1_4:45796329-45796348 None:intergenic 40.0%
TCTCCTAAAACAGTTGACCT+TGG - chr1_4:45794037-45794056 Msa0165340:three_prime_UTR 40.0%
! ACACCAAGGTCAACTGTTTT+AGG + chr1_4:45794043-45794062 None:intergenic 40.0%
CAAACACAAAGACAACACCA+AGG + chr1_4:45794057-45794076 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG - chr1_4:45794185-45794204 Msa0165340:three_prime_UTR 40.0%
CTGAAGATTGAAGATGGACA+AGG - chr1_4:45794474-45794493 Msa0165340:intron 40.0%
GAAGCATGCGTTTATTGGAT+TGG - chr1_4:45794497-45794516 Msa0165340:intron 40.0%
AGCATGCGTTTATTGGATTG+GGG - chr1_4:45794499-45794518 Msa0165340:intron 40.0%
! GTTTATTGGATTGGGGTTTG+CGG - chr1_4:45794506-45794525 Msa0165340:intron 40.0%
AGAGAACATGATAAGGAGTC+TGG - chr1_4:45794588-45794607 Msa0165340:intron 40.0%
! GTTGCTATTGCAAATGATCG+TGG - chr1_4:45795041-45795060 Msa0165340:CDS 40.0%
GTGCTTGACATTAATCCTGA+TGG + chr1_4:45795275-45795294 None:intergenic 40.0%
CAGGATTAATGTCAAGCACA+AGG - chr1_4:45795276-45795295 Msa0165340:intron 40.0%
GATTAATGTCAAGCACAAGG+CGG - chr1_4:45795279-45795298 Msa0165340:intron 40.0%
! GGAGCAAGGTTCAATACTTT+TGG + chr1_4:45795367-45795386 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG - chr1_4:45795466-45795485 Msa0165340:intron 40.0%
GTCCCTTTAACACTAGATAC+AGG + chr1_4:45795472-45795491 None:intergenic 40.0%
GGAAATAGGAAAGGCTCTTA+AGG + chr1_4:45795570-45795589 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG - chr1_4:45795624-45795643 Msa0165340:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG + chr1_4:45795859-45795878 None:intergenic 40.0%
TTGAAGGAAGCTGAAGAAAG+AGG - chr1_4:45796160-45796179 Msa0165340:exon 40.0%
GTCATAAGTATAGTTAGCGC+AGG - chr1_4:45796184-45796203 Msa0165340:five_prime_UTR 40.0%
! CTCCCAATCTTTATTGACTG+TGG - chr1_4:45796323-45796342 Msa0165340:five_prime_UTR 40.0%
CGCCACAGTCAATAAAGATT+GGG + chr1_4:45796328-45796347 None:intergenic 40.0%
ACGCCACAGTCAATAAAGAT+TGG + chr1_4:45796329-45796348 None:intergenic 40.0%
TGAGAAACGCGTTATTGGTG+TGG + chr1_4:45794103-45794122 None:intergenic 45.0%
CAATCAGACAAGATCTGGTC+CGG - chr1_4:45794303-45794322 Msa0165340:three_prime_UTR 45.0%
CGGAGTTAGGATCTTCTAAC+CGG + chr1_4:45794368-45794387 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG - chr1_4:45794366-45794385 Msa0165340:CDS 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG - chr1_4:45794399-45794418 Msa0165340:intron 45.0%
TATCTCGACGAATCGAGAAC+CGG + chr1_4:45794447-45794466 None:intergenic 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG - chr1_4:45794492-45794511 Msa0165340:intron 45.0%
TGATCATGGTGAATTGTCCG+AGG - chr1_4:45794924-45794943 Msa0165340:CDS 45.0%
TGCAAATGATCGTGGGCAAA+TGG - chr1_4:45795049-45795068 Msa0165340:CDS 45.0%
GCAAATGATCGTGGGCAAAT+GGG - chr1_4:45795050-45795069 Msa0165340:CDS 45.0%
CAAATGATCGTGGGCAAATG+GGG - chr1_4:45795051-45795070 Msa0165340:CDS 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG - chr1_4:45795240-45795259 Msa0165340:intron 45.0%
AAGGCTCTTAAGGAATGAGC+AGG + chr1_4:45795560-45795579 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG - chr1_4:45795987-45796006 Msa0165340:CDS 45.0%
TTGGGAGAGATCAAGGGATT+GGG + chr1_4:45796310-45796329 None:intergenic 45.0%
ATTGGGAGAGATCAAGGGAT+TGG + chr1_4:45796311-45796330 None:intergenic 45.0%
TGAGAAACGCGTTATTGGTG+TGG + chr1_4:45794103-45794122 None:intergenic 45.0%
CAATCAGACAAGATCTGGTC+CGG - chr1_4:45794303-45794322 Msa0165340:three_prime_UTR 45.0%
CGGAGTTAGGATCTTCTAAC+CGG + chr1_4:45794368-45794387 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG - chr1_4:45794366-45794385 Msa0165340:CDS 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG - chr1_4:45794399-45794418 Msa0165340:intron 45.0%
TATCTCGACGAATCGAGAAC+CGG + chr1_4:45794447-45794466 None:intergenic 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG - chr1_4:45794492-45794511 Msa0165340:intron 45.0%
TGATCATGGTGAATTGTCCG+AGG - chr1_4:45794924-45794943 Msa0165340:CDS 45.0%
TGCAAATGATCGTGGGCAAA+TGG - chr1_4:45795049-45795068 Msa0165340:CDS 45.0%
GCAAATGATCGTGGGCAAAT+GGG - chr1_4:45795050-45795069 Msa0165340:CDS 45.0%
CAAATGATCGTGGGCAAATG+GGG - chr1_4:45795051-45795070 Msa0165340:CDS 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG - chr1_4:45795240-45795259 Msa0165340:intron 45.0%
AAGGCTCTTAAGGAATGAGC+AGG + chr1_4:45795560-45795579 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG - chr1_4:45795987-45796006 Msa0165340:CDS 45.0%
TTGGGAGAGATCAAGGGATT+GGG + chr1_4:45796310-45796329 None:intergenic 45.0%
ATTGGGAGAGATCAAGGGAT+TGG + chr1_4:45796311-45796330 None:intergenic 45.0%
GGCTCCAATCAGACAAGATC+TGG - chr1_4:45794298-45794317 Msa0165340:three_prime_UTR 50.0%
CGGACCAGATCTTGTCTGAT+TGG + chr1_4:45794305-45794324 None:intergenic 50.0%
ATCGATCTGTGAATCCTCCG+CGG + chr1_4:45794625-45794644 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG + chr1_4:45795123-45795142 None:intergenic 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG - chr1_4:45795243-45795262 Msa0165340:intron 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG - chr1_4:45795244-45795263 Msa0165340:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG + chr1_4:45795258-45795277 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG - chr1_4:45795257-45795276 Msa0165340:intron 50.0%
TTGCTACATGCACACCCGAT+AGG + chr1_4:45795336-45795355 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG + chr1_4:45795394-45795413 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG + chr1_4:45795416-45795435 None:intergenic 50.0%
TCCACTCCCACCAAATGATC+CGG - chr1_4:45795420-45795439 Msa0165340:intron 50.0%
CAGCAACCGGATCATTTGGT+GGG + chr1_4:45795429-45795448 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG - chr1_4:45795431-45795450 Msa0165340:intron 50.0%
GATCAACACCTGCATCAGGA+TGG - chr1_4:45795986-45796005 Msa0165340:CDS 50.0%
TGATTGCTCGAGGAATGTCC+TGG - chr1_4:45796220-45796239 Msa0165340:five_prime_UTR 50.0%
TGGGAGAGATCAAGGGATTG+GGG + chr1_4:45796309-45796328 None:intergenic 50.0%
GGCTCCAATCAGACAAGATC+TGG - chr1_4:45794298-45794317 Msa0165340:three_prime_UTR 50.0%
CGGACCAGATCTTGTCTGAT+TGG + chr1_4:45794305-45794324 None:intergenic 50.0%
ATCGATCTGTGAATCCTCCG+CGG + chr1_4:45794625-45794644 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG + chr1_4:45795123-45795142 None:intergenic 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG - chr1_4:45795243-45795262 Msa0165340:intron 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG - chr1_4:45795244-45795263 Msa0165340:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG + chr1_4:45795258-45795277 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG - chr1_4:45795257-45795276 Msa0165340:intron 50.0%
TTGCTACATGCACACCCGAT+AGG + chr1_4:45795336-45795355 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG + chr1_4:45795394-45795413 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG + chr1_4:45795416-45795435 None:intergenic 50.0%
TCCACTCCCACCAAATGATC+CGG - chr1_4:45795420-45795439 Msa0165340:intron 50.0%
CAGCAACCGGATCATTTGGT+GGG + chr1_4:45795429-45795448 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG - chr1_4:45795431-45795450 Msa0165340:intron 50.0%
GATCAACACCTGCATCAGGA+TGG - chr1_4:45795986-45796005 Msa0165340:CDS 50.0%
TGATTGCTCGAGGAATGTCC+TGG - chr1_4:45796220-45796239 Msa0165340:five_prime_UTR 50.0%
TGGGAGAGATCAAGGGATTG+GGG + chr1_4:45796309-45796328 None:intergenic 50.0%
ACCTCCGGCGGTTACAAATG+CGG - chr1_4:45794270-45794289 Msa0165340:three_prime_UTR 55.0%
TTCGCCGCATTTGTAACCGC+CGG + chr1_4:45794277-45794296 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG - chr1_4:45794277-45794296 Msa0165340:three_prime_UTR 55.0%
CTTCTAACCGGATCTCGCAC+CGG + chr1_4:45794356-45794375 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG + chr1_4:45794381-45794400 None:intergenic 55.0%
ACACGCAGCGAAGAGATCAC+CGG + chr1_4:45794388-45794407 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG - chr1_4:45794410-45794429 Msa0165340:intron 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG - chr1_4:45794411-45794430 Msa0165340:intron 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG - chr1_4:45794511-45794530 Msa0165340:intron 55.0%
AATGTCAAGCACAAGGCGGC+TGG - chr1_4:45795283-45795302 Msa0165340:intron 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG - chr1_4:45795318-45795337 Msa0165340:intron 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG - chr1_4:45795319-45795338 Msa0165340:intron 55.0%
ATTGAACCTTGCTCCCCCAC+CGG - chr1_4:45795372-45795391 Msa0165340:intron 55.0%
! TGATTTTCCCTGCACCCGGT+GGG + chr1_4:45795390-45795409 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG + chr1_4:45795424-45795443 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG + chr1_4:45795430-45795449 None:intergenic 55.0%
CGAGCAGCAACCGGATCATT+TGG + chr1_4:45795433-45795452 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG + chr1_4:45795442-45795461 None:intergenic 55.0%
GCTGCTCGGATTGCTTCTAC+CGG - chr1_4:45795445-45795464 Msa0165340:intron 55.0%
GATCCAGGAGTGGCTGATGA+GGG + chr1_4:45795970-45795989 None:intergenic 55.0%
TGATCCAGGAGTGGCTGATG+AGG + chr1_4:45795971-45795990 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG + chr1_4:45795980-45795999 None:intergenic 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG + chr1_4:45795985-45796004 None:intergenic 55.0%
CCTGGATCAACACCTGCATC+AGG - chr1_4:45795982-45796001 Msa0165340:CDS 55.0%
ATCGACAGCTGCGTCAGGAT+TGG - chr1_4:45796043-45796062 Msa0165340:CDS 55.0%
ACCTCCGGCGGTTACAAATG+CGG - chr1_4:45794270-45794289 Msa0165340:three_prime_UTR 55.0%
TTCGCCGCATTTGTAACCGC+CGG + chr1_4:45794277-45794296 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG - chr1_4:45794277-45794296 Msa0165340:three_prime_UTR 55.0%
CTTCTAACCGGATCTCGCAC+CGG + chr1_4:45794356-45794375 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG + chr1_4:45794381-45794400 None:intergenic 55.0%
ACACGCAGCGAAGAGATCAC+CGG + chr1_4:45794388-45794407 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG - chr1_4:45794410-45794429 Msa0165340:intron 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG - chr1_4:45794411-45794430 Msa0165340:intron 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG - chr1_4:45794511-45794530 Msa0165340:intron 55.0%
AATGTCAAGCACAAGGCGGC+TGG - chr1_4:45795283-45795302 Msa0165340:intron 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG - chr1_4:45795318-45795337 Msa0165340:intron 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG - chr1_4:45795319-45795338 Msa0165340:intron 55.0%
ATTGAACCTTGCTCCCCCAC+CGG - chr1_4:45795372-45795391 Msa0165340:intron 55.0%
! TGATTTTCCCTGCACCCGGT+GGG + chr1_4:45795390-45795409 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG + chr1_4:45795424-45795443 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG + chr1_4:45795430-45795449 None:intergenic 55.0%
CGAGCAGCAACCGGATCATT+TGG + chr1_4:45795433-45795452 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG + chr1_4:45795442-45795461 None:intergenic 55.0%
GCTGCTCGGATTGCTTCTAC+CGG - chr1_4:45795445-45795464 Msa0165340:intron 55.0%
GATCCAGGAGTGGCTGATGA+GGG + chr1_4:45795970-45795989 None:intergenic 55.0%
TGATCCAGGAGTGGCTGATG+AGG + chr1_4:45795971-45795990 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG + chr1_4:45795980-45795999 None:intergenic 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG + chr1_4:45795985-45796004 None:intergenic 55.0%
CCTGGATCAACACCTGCATC+AGG - chr1_4:45795982-45796001 Msa0165340:CDS 55.0%
ATCGACAGCTGCGTCAGGAT+TGG - chr1_4:45796043-45796062 Msa0165340:CDS 55.0%
TCGCGGCGGGATCTTGTAGA+CGG + chr1_4:45794247-45794266 None:intergenic 60.0%
TAACCGCCGGAGGTTGTTCG+CGG + chr1_4:45794264-45794283 None:intergenic 60.0%
AACCGAACCCTCACGCTGAC+CGG + chr1_4:45794421-45794440 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG - chr1_4:45794425-45794444 Msa0165340:intron 60.0%
! GTCTGGTGATGCTGATGCCG+CGG - chr1_4:45794605-45794624 Msa0165340:intron 60.0%
GCTGGCATGCTTTCAGCTGC+TGG - chr1_4:45795310-45795329 Msa0165340:intron 60.0%
TTGAACCTTGCTCCCCCACC+GGG - chr1_4:45795373-45795392 Msa0165340:intron 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG + chr1_4:45795388-45795407 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG + chr1_4:45795389-45795408 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG + chr1_4:45795391-45795410 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG - chr1_4:45795964-45795983 Msa0165340:CDS 60.0%
AAGGCTGCCCATCCTGATGC+AGG + chr1_4:45795997-45796016 None:intergenic 60.0%
CGCAGCTGTCGATCCAAGAG+TGG + chr1_4:45796036-45796055 None:intergenic 60.0%
CTTGGATCGACAGCTGCGTC+AGG - chr1_4:45796038-45796057 Msa0165340:CDS 60.0%
TCGCGGCGGGATCTTGTAGA+CGG + chr1_4:45794247-45794266 None:intergenic 60.0%
TAACCGCCGGAGGTTGTTCG+CGG + chr1_4:45794264-45794283 None:intergenic 60.0%
AACCGAACCCTCACGCTGAC+CGG + chr1_4:45794421-45794440 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG - chr1_4:45794425-45794444 Msa0165340:intron 60.0%
! GTCTGGTGATGCTGATGCCG+CGG - chr1_4:45794605-45794624 Msa0165340:intron 60.0%
GCTGGCATGCTTTCAGCTGC+TGG - chr1_4:45795310-45795329 Msa0165340:intron 60.0%
TTGAACCTTGCTCCCCCACC+GGG - chr1_4:45795373-45795392 Msa0165340:intron 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG + chr1_4:45795388-45795407 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG + chr1_4:45795389-45795408 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG + chr1_4:45795391-45795410 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG - chr1_4:45795964-45795983 Msa0165340:CDS 60.0%
AAGGCTGCCCATCCTGATGC+AGG + chr1_4:45795997-45796016 None:intergenic 60.0%
CGCAGCTGTCGATCCAAGAG+TGG + chr1_4:45796036-45796055 None:intergenic 60.0%
CTTGGATCGACAGCTGCGTC+AGG - chr1_4:45796038-45796057 Msa0165340:CDS 60.0%
! CGCGAACGACGAGGAGTGTG+TGG + chr1_4:45794218-45794237 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG - chr1_4:45794255-45794274 Msa0165340:three_prime_UTR 65.0%
GCCGCATTTGTAACCGCCGG+AGG + chr1_4:45794274-45794293 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG + chr1_4:45794325-45794344 None:intergenic 65.0%
GGCGAGATACGACGCGGAGA+CGG + chr1_4:45794329-45794348 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG + chr1_4:45794335-45794354 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG - chr1_4:45794334-45794353 Msa0165340:exon 65.0%
! ACCGGATCTCGCACCGGTCA+CGG + chr1_4:45794350-45794369 None:intergenic 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG - chr1_4:45794416-45794435 Msa0165340:intron 65.0%
ACCGAACCCTCACGCTGACC+GGG + chr1_4:45794420-45794439 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG - chr1_4:45794608-45794627 Msa0165340:intron 65.0%
GTCAAGCACAAGGCGGCTGG+TGG - chr1_4:45795286-45795305 Msa0165340:intron 65.0%
! CGCGAACGACGAGGAGTGTG+TGG + chr1_4:45794218-45794237 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG - chr1_4:45794255-45794274 Msa0165340:three_prime_UTR 65.0%
GCCGCATTTGTAACCGCCGG+AGG + chr1_4:45794274-45794293 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG + chr1_4:45794325-45794344 None:intergenic 65.0%
GGCGAGATACGACGCGGAGA+CGG + chr1_4:45794329-45794348 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG + chr1_4:45794335-45794354 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG - chr1_4:45794334-45794353 Msa0165340:exon 65.0%
! ACCGGATCTCGCACCGGTCA+CGG + chr1_4:45794350-45794369 None:intergenic 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG - chr1_4:45794416-45794435 Msa0165340:intron 65.0%
ACCGAACCCTCACGCTGACC+GGG + chr1_4:45794420-45794439 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG - chr1_4:45794608-45794627 Msa0165340:intron 65.0%
GTCAAGCACAAGGCGGCTGG+TGG - chr1_4:45795286-45795305 Msa0165340:intron 65.0%
CGGCGACTTCGCGAACGACG+AGG + chr1_4:45794227-45794246 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG - chr1_4:45794346-45794365 Msa0165340:CDS 70.0%
CACAAGGCGGCTGGTGGAGC+TGG - chr1_4:45795292-45795311 Msa0165340:intron 70.0%
TTGCTCCCCCACCGGGTGCA+GGG - chr1_4:45795380-45795399 Msa0165340:intron 70.0%
CGGCGACTTCGCGAACGACG+AGG + chr1_4:45794227-45794246 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG - chr1_4:45794346-45794365 Msa0165340:CDS 70.0%
CACAAGGCGGCTGGTGGAGC+TGG - chr1_4:45795292-45795311 Msa0165340:intron 70.0%
TTGCTCCCCCACCGGGTGCA+GGG - chr1_4:45795380-45795399 Msa0165340:intron 70.0%
CGCCGGAGGTTGTTCGCGGC+GGG + chr1_4:45794260-45794279 None:intergenic 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG + chr1_4:45794261-45794280 None:intergenic 75.0%
CCGCCGCGAACAACCTCCGG+CGG - chr1_4:45794258-45794277 Msa0165340:three_prime_UTR 75.0%
CTGCACCCGGTGGGGGAGCA+AGG + chr1_4:45795381-45795400 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG - chr1_4:45795379-45795398 Msa0165340:intron 75.0%
CGCCGGAGGTTGTTCGCGGC+GGG + chr1_4:45794260-45794279 None:intergenic 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG + chr1_4:45794261-45794280 None:intergenic 75.0%
CCGCCGCGAACAACCTCCGG+CGG - chr1_4:45794258-45794277 Msa0165340:three_prime_UTR 75.0%
CTGCACCCGGTGGGGGAGCA+AGG + chr1_4:45795381-45795400 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG - chr1_4:45795379-45795398 Msa0165340:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 45793995 45796360 45793995 ID=Msa0165340;Name=Msa0165340
chr1_4 mRNA 45793995 45796360 45793995 ID=Msa0165340-mRNA-1;Parent=Msa0165340;Name=Msa0165340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=188|1|1|1|1|1|3|340|279
chr1_4 exon 45793995 45794397 45793995 ID=Msa0165340-mRNA-1:exon:13180;Parent=Msa0165340-mRNA-1
chr1_4 exon 45794809 45795093 45794809 ID=Msa0165340-mRNA-1:exon:13179;Parent=Msa0165340-mRNA-1
chr1_4 exon 45795681 45796360 45795681 ID=Msa0165340-mRNA-1:exon:13178;Parent=Msa0165340-mRNA-1
chr1_4 five_prime_UTR 45796173 45796360 45796173 ID=Msa0165340-mRNA-1:five_prime_utr;Parent=Msa0165340-mRNA-1
chr1_4 CDS 45795681 45796172 45795681 ID=Msa0165340-mRNA-1:cds;Parent=Msa0165340-mRNA-1
chr1_4 CDS 45794809 45795093 45794809 ID=Msa0165340-mRNA-1:cds;Parent=Msa0165340-mRNA-1
chr1_4 CDS 45794335 45794397 45794335 ID=Msa0165340-mRNA-1:cds;Parent=Msa0165340-mRNA-1
chr1_4 three_prime_UTR 45793995 45794334 45793995 ID=Msa0165340-mRNA-1:three_prime_utr;Parent=Msa0165340-mRNA-1
Gene Sequence

>Msa0165340

ATGTCGTTAGAAGAAGAAGAAGAGGGCTTCGACCACACACTCCTCGTCGTTCGCGAAGTCGCCGTCTACAAGATCCCGCCGCGAACAACCTCCGGCGGTTACAAATGCGGCGAATGGCTCCAATCAGACAAGATCTGGTCCGGCCGTCTCCGCGTCGTATCTCGCCGTGACCGGTGCGAGATCCGGTTAGAAGATCCTAACTCCGGTGATCTCTTCGCTGCGTGTTTTGTTTTTCCCGGTCAGCGTGAGGGTTCGGTTGAACCGGTTCTCGATTCGTCGAGATATTTTGTTCTGAAGATTGAAGATGGACAAGGGAAGCATGCGTTTATTGGATTGGGGTTTGCGGAGAGGAATGAAGCTTTTGATTTCAATGTTGCACTTTCTGATCATGAGAAGTATGTGAGAAGAGAACATGATAAGGAGTCTGGTGATGCTGATGCCGCGGAGGATTCACAGATCGATATTCATCCTGCTGTTAATCATAGGCTTAAGGAGGGAGAAACCATCAGGATTAATGTCAAGCACAAGGCGGCTGGTGGAGCTGGCATGCTTTCAGCTGCTGGCCTATCGGGTGTGCATGTAGCAACACCGAAGCCAAAAGTATTGAACCTTGCTCCCCCACCGGGTGCAGGGAAAATCAGATCCGCTCTTCCACTCCCACCAAATGATCCGGTTGCTGCTCGGATTGCTTCTACCGGTCCTGTATCTAGTGTTAAAGGGACAAAAGAAGGTGTGAAACAGTCTACTGATTCTCTATCGGATCTTTCTCAATTACAGAAAAATCTTCCCTCATCAGCCACTCCTGGATCAACACCTGCATCAGGATGGGCAGCCTTCTGA
Protein sequence

>Msa0165340

MSLEEEEEGFDHTLLVVREVAVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGDADAAEDSQIDIHPAVNHRLKEGETIRINVKHKAAGGAGMLSAAGLSGVHVATPKPKVLNLAPPPGAGKIRSALPLPPNDPVAARIASTGPVSSVKGTKEGVKQSTDSLSDLSQLQKNLPSSATPGSTPASGWAAF*