Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123910 | XP_013468580.1 | 97.288 | 553 | 15 | 0 | 1 | 553 | 1 | 553 | 0.0 | 1100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123910 | sp|P27456|GSHRP_PEA | 90.778 | 553 | 50 | 1 | 1 | 553 | 1 | 552 | 0.0 | 1036 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123910 | A0A072VL94 | 97.288 | 553 | 15 | 0 | 1 | 553 | 1 | 553 | 0.0 | 1100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024240 | Msa0123910 | 0.805018 | 1.634173e-49 | -8.615850e-47 |
| Msa0033590 | Msa0123910 | 0.836811 | 7.518826e-57 | -8.615850e-47 |
| Msa0123910 | Msa0168370 | 0.802306 | 5.973772e-49 | -8.615850e-47 |
| Msa0123910 | Msa0548260 | 0.804190 | 2.433340e-49 | -8.615850e-47 |
| Msa0123910 | Msa0603180 | 0.818269 | 2.140536e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123910 | MtrunA17_Chr1g0184771 | 97.288 | 553 | 15 | 0 | 1 | 553 | 1 | 553 | 0.0 | 1100 |
| Msa0123910 | MtrunA17_Chr6g0462411 | 53.878 | 477 | 213 | 5 | 66 | 536 | 16 | 491 | 0.0 | 518 |
| Msa0123910 | MtrunA17_Chr4g0068201 | 31.720 | 558 | 321 | 17 | 6 | 521 | 1 | 540 | 1.46e-48 | 177 |
| Msa0123910 | MtrunA17_Chr2g0294661 | 31.707 | 492 | 292 | 15 | 58 | 521 | 68 | 543 | 1.53e-48 | 177 |
| Msa0123910 | MtrunA17_Chr4g0068951 | 28.176 | 433 | 291 | 9 | 104 | 521 | 59 | 486 | 4.73e-46 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0123910 | AT3G54660.1 | 79.693 | 522 | 91 | 2 | 45 | 552 | 44 | 564 | 0.0 | 874 |
| Msa0123910 | AT3G24170.1 | 53.404 | 470 | 212 | 4 | 70 | 533 | 21 | 489 | 2.71e-177 | 509 |
| Msa0123910 | AT3G24170.2 | 53.404 | 470 | 212 | 4 | 70 | 533 | 21 | 489 | 2.71e-177 | 509 |
| Msa0123910 | AT3G24170.3 | 53.404 | 470 | 212 | 4 | 70 | 533 | 21 | 489 | 2.71e-177 | 509 |
| Msa0123910 | AT3G16950.1 | 32.624 | 564 | 314 | 22 | 3 | 521 | 2 | 544 | 6.78e-50 | 181 |
| Msa0123910 | AT3G16950.2 | 32.624 | 564 | 314 | 22 | 3 | 521 | 2 | 544 | 1.91e-49 | 181 |
| Msa0123910 | AT4G16155.1 | 32.091 | 483 | 278 | 14 | 69 | 521 | 79 | 541 | 6.47e-48 | 176 |
| Msa0123910 | AT1G48030.2 | 26.061 | 495 | 340 | 10 | 47 | 521 | 3 | 491 | 5.82e-43 | 160 |
| Msa0123910 | AT1G48030.5 | 26.061 | 495 | 340 | 10 | 47 | 521 | 3 | 491 | 5.82e-43 | 160 |
| Msa0123910 | AT1G48030.3 | 26.061 | 495 | 340 | 10 | 47 | 521 | 3 | 491 | 5.82e-43 | 160 |
| Msa0123910 | AT1G48030.1 | 26.061 | 495 | 340 | 10 | 47 | 521 | 3 | 491 | 5.82e-43 | 160 |
| Msa0123910 | AT1G48030.4 | 26.061 | 495 | 340 | 10 | 47 | 521 | 3 | 491 | 5.82e-43 | 160 |
| Msa0123910 | AT3G17240.1 | 27.455 | 499 | 328 | 12 | 47 | 521 | 3 | 491 | 8.01e-42 | 157 |
| Msa0123910 | AT3G17240.3 | 27.455 | 499 | 328 | 12 | 47 | 521 | 3 | 491 | 8.01e-42 | 157 |
Find 177 sgRNAs with CRISPR-Local
Find 458 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGCTTTGCTTCCAATTT+TGG | 0.060519 | 1_3:+51235984 | Msa0123910:CDS |
| CCACTGAAGGCCACCCTCTC+TGG | 0.136948 | 1_3:+51240194 | Msa0123910:CDS |
| GAGTTTGCTGGTATCTTTAA+TGG | 0.157959 | 1_3:+51238012 | Msa0123910:CDS |
| AAAAGGGCGGAATGGAATTT+TGG | 0.164446 | 1_3:+51242219 | Msa0123910:three_prime_UTR |
| AAACATCGGTTCCTTCAATT+TGG | 0.171733 | 1_3:+51239139 | Msa0123910:CDS |
| AGAGAGAAGGAGCGAGAAAA+TGG | 0.192227 | 1_3:-51235807 | None:intergenic |
| GGTGAAGAATAGAGTGTTTC+GGG | 0.205444 | 1_3:-51235775 | None:intergenic |
| ACAATTTCACTGCAGAATTT+AGG | 0.226558 | 1_3:+51238972 | Msa0123910:intron |
| AAACTTCATACCTTAGTATT+AGG | 0.232538 | 1_3:-51238351 | None:intergenic |
| GCCATTGCTGCTTGCTTCAT+TGG | 0.244519 | 1_3:-51235714 | None:intergenic |
| TAATTTATCCTGCACAAAAT+AGG | 0.258352 | 1_3:+51242453 | Msa0123910:three_prime_UTR |
| GCTGAGTTGCAGAGGCTTAC+TGG | 0.274604 | 1_3:+51237631 | Msa0123910:CDS |
| ATGCGAGAATATAGTATCTA+TGG | 0.276094 | 1_3:-51235640 | None:intergenic |
| TTTGAAGAAAGCAATGGTTT+TGG | 0.285225 | 1_3:+51237550 | Msa0123910:CDS |
| TCTCACTCCAGTTGCTTTGA+TGG | 0.293228 | 1_3:+51239191 | Msa0123910:CDS |
| TAGAGTGTTTCGGGTAAGTA+AGG | 0.298638 | 1_3:-51235766 | None:intergenic |
| TACATTGCCTTGGAGTTTGC+TGG | 0.310725 | 1_3:+51238000 | Msa0123910:CDS |
| AGCGAAGGTGCGGCGGGGAG+GGG | 0.316240 | 1_3:-51235868 | None:intergenic |
| AGCAGCGTTAGCACCAAAAT+TGG | 0.316676 | 1_3:-51235997 | None:intergenic |
| TCTATTGCATATTCCTTTCC+AGG | 0.317991 | 1_3:-51237916 | None:intergenic |
| CCCTTCATTCCTGATATTCC+TGG | 0.322317 | 1_3:+51237898 | Msa0123910:CDS |
| CCCTCTCTGGGCTTCCAGAC+CGG | 0.323993 | 1_3:+51240207 | Msa0123910:CDS |
| TATTCCTTTCCAGGAATATC+AGG | 0.334157 | 1_3:-51237907 | None:intergenic |
| GCGAGAAAATGGGAAGGTTT+TGG | 0.339049 | 1_3:-51235796 | None:intergenic |
| AACATCGGTTCCTTCAATTT+GGG | 0.350449 | 1_3:+51239140 | Msa0123910:CDS |
| AGCCAACAAAACCTGATTAT+AGG | 0.353075 | 1_3:+51239250 | Msa0123910:CDS |
| CCTCTCTGGGCTTCCAGACC+GGG | 0.370019 | 1_3:+51240208 | Msa0123910:CDS |
| CCAACAATGGCAATCTTCTC+AGG | 0.371658 | 1_3:-51237970 | None:intergenic |
| CACTGAAGGCCACCCTCTCT+GGG | 0.374084 | 1_3:+51240195 | Msa0123910:CDS |
| AATGTATATTACCTATAATC+AGG | 0.374502 | 1_3:-51239261 | None:intergenic |
| GGAGAGAGAAGTTAGGGTTT+TGG | 0.383609 | 1_3:-51235847 | None:intergenic |
| AACTCCTCCAATTGGTGGTT+GGG | 0.383902 | 1_3:-51240000 | None:intergenic |
| CTTATTTAATTTGAAGCAGT+TGG | 0.384914 | 1_3:+51242350 | Msa0123910:three_prime_UTR |
| ACAGCGAAGGTGCGGCGGGG+AGG | 0.385464 | 1_3:-51235870 | None:intergenic |
| CAGCGAAGGTGCGGCGGGGA+GGG | 0.397262 | 1_3:-51235869 | None:intergenic |
| GAGAGAAGGAGCGAGAAAAT+GGG | 0.397322 | 1_3:-51235806 | None:intergenic |
| GCATAGACGAGTAATTTCTT+TGG | 0.399267 | 1_3:-51237508 | None:intergenic |
| TACCAGCGCCGATGGTAAAA+AGG | 0.401258 | 1_3:-51235944 | None:intergenic |
| GAAACTTGCCGATGCCTTTG+AGG | 0.401931 | 1_3:+51241110 | Msa0123910:three_prime_UTR |
| ACCATCCACGGTACCTTTGC+TGG | 0.403218 | 1_3:-51238295 | None:intergenic |
| TGTCTTGAAAGCTCAGTTGC+CGG | 0.405143 | 1_3:-51242166 | None:intergenic |
| TGGTGAAGAATAGAGTGTTT+CGG | 0.406871 | 1_3:-51235776 | None:intergenic |
| AAGGCATCGGCAAGTTTCTC+TGG | 0.411298 | 1_3:-51241105 | None:intergenic |
| AACTGAAACTAAAATGTGTT+TGG | 0.416281 | 1_3:-51237866 | None:intergenic |
| CTACAGGAGACTCCTCAGTA+TGG | 0.424734 | 1_3:-51238233 | None:intergenic |
| CCTCACACAGTTGATGTTGA+TGG | 0.426893 | 1_3:+51237829 | Msa0123910:CDS |
| TTCTGGGTTTGCACATGTGT+GGG | 0.429264 | 1_3:+51240270 | Msa0123910:CDS |
| TCTAATGTCAAGTTGATTGA+AGG | 0.429954 | 1_3:+51237679 | Msa0123910:CDS |
| ACTCCCTCCATCAAAGCAAC+TGG | 0.439081 | 1_3:-51239198 | None:intergenic |
| GTTCCTTCAATTTGGGCAAT+CGG | 0.441096 | 1_3:+51239147 | Msa0123910:CDS |
| TTTGCAGTTGCTATTAAAGC+TGG | 0.444400 | 1_3:+51240406 | Msa0123910:CDS |
| TTTACCATCGGCGCTGGTAG+TGG | 0.445155 | 1_3:+51235948 | Msa0123910:CDS |
| GCACAGGCTGTAGAACAATA+TGG | 0.445183 | 1_3:+51240140 | Msa0123910:intron |
| CTTGATTTACCTGTGAATCA+AGG | 0.448766 | 1_3:-51240528 | None:intergenic |
| TCTCATATTATGTTTGCTAC+AGG | 0.452576 | 1_3:+51238321 | Msa0123910:CDS |
| CGGGGTGAGCTCATTTGAAA+AGG | 0.452701 | 1_3:+51242202 | Msa0123910:three_prime_UTR |
| ACAGTGAACCTAAGCATGAT+TGG | 0.455004 | 1_3:+51237584 | Msa0123910:CDS |
| TGTATTTATACGACAAAAGC+AGG | 0.455244 | 1_3:+51238053 | Msa0123910:CDS |
| CCTGAGAAGATTGCCATTGT+TGG | 0.456099 | 1_3:+51237970 | Msa0123910:CDS |
| GGGGAGGGGAGAGAGAAGTT+AGG | 0.456123 | 1_3:-51235854 | None:intergenic |
| TCGAAAGAGCCTTGATTCAC+AGG | 0.456430 | 1_3:+51240519 | Msa0123910:CDS |
| CGCGGACAGCGAAGGTGCGG+CGG | 0.457016 | 1_3:-51235875 | None:intergenic |
| GGGAGGGGAGAGAGAAGTTA+GGG | 0.462334 | 1_3:-51235853 | None:intergenic |
| AGGACGCAAACCTAATACTA+AGG | 0.462907 | 1_3:+51238341 | Msa0123910:CDS |
| GCGGACAGCGAAGGTGCGGC+GGG | 0.464036 | 1_3:-51235874 | None:intergenic |
| TCTCCGATTGCCCAAATTGA+AGG | 0.476874 | 1_3:-51239150 | None:intergenic |
| ACTCCAGTTGCTTTGATGGA+GGG | 0.482584 | 1_3:+51239195 | Msa0123910:CDS |
| AGTTGGTCTCACAGAGGAGC+AGG | 0.483401 | 1_3:+51240019 | Msa0123910:CDS |
| TCCAGGAATATCAGGAATGA+AGG | 0.485140 | 1_3:-51237899 | None:intergenic |
| GTGAGACCAACTCCTCCAAT+TGG | 0.485622 | 1_3:-51240008 | None:intergenic |
| AAACTACTCCAATCATGCTT+AGG | 0.489785 | 1_3:-51237592 | None:intergenic |
| ACAAACTCCTCAGCTGCGGT+TGG | 0.490186 | 1_3:-51240469 | None:intergenic |
| AGTTGCTTTGATGGAGGGAG+TGG | 0.491872 | 1_3:+51239200 | Msa0123910:CDS |
| TTACGTGCCACCGACACCTC+CGG | 0.494969 | 1_3:-51236060 | None:intergenic |
| CAATCGGAGATGCTACAAAC+AGG | 0.496018 | 1_3:+51239163 | Msa0123910:CDS |
| TTCCTCTGAATATGTACAAA+GGG | 0.496817 | 1_3:-51242288 | None:intergenic |
| TCGAAGTCATAGTGGATGGC+GGG | 0.496947 | 1_3:-51235921 | None:intergenic |
| CAAACTCCTCAGCTGCGGTT+GGG | 0.497195 | 1_3:-51240468 | None:intergenic |
| CAACCACCAATTGGAGGAGT+TGG | 0.497734 | 1_3:+51240002 | Msa0123910:CDS |
| GTGTTCTCCCAACCACCAAT+TGG | 0.499772 | 1_3:+51239993 | Msa0123910:CDS |
| CTCATTTGAAAAGGGCGGAA+TGG | 0.507703 | 1_3:+51242211 | Msa0123910:three_prime_UTR |
| AAAGCAATATTGTTAAGTTC+CGG | 0.508995 | 1_3:-51241067 | None:intergenic |
| TTCACTGCAGAATTTAGGAC+TGG | 0.509056 | 1_3:+51238977 | Msa0123910:intron |
| GGTTGGGAGAACACAGCAGC+AGG | 0.513851 | 1_3:-51239984 | None:intergenic |
| CTTCCTAGTGGGAGTCCTCA+TGG | 0.514013 | 1_3:-51240494 | None:intergenic |
| CACGAATTTGAAGAAAGCAA+TGG | 0.518983 | 1_3:+51237544 | Msa0123910:CDS |
| CAACTCCTCCAATTGGTGGT+TGG | 0.519267 | 1_3:-51240001 | None:intergenic |
| CATTCCTGATATTCCTGGAA+AGG | 0.522049 | 1_3:+51237903 | Msa0123910:CDS |
| CACTCCAGTTGCTTTGATGG+AGG | 0.522427 | 1_3:+51239194 | Msa0123910:CDS |
| CGATTCAGCGCGGACAGCGA+AGG | 0.522983 | 1_3:-51235883 | None:intergenic |
| TAAGGGAGAAGAACAAGAGA+GGG | 0.523490 | 1_3:-51235748 | None:intergenic |
| AAGACAATACATGAAATAGC+GGG | 0.527633 | 1_3:+51242183 | Msa0123910:three_prime_UTR |
| GTTCTGGGTTTGCACATGTG+TGG | 0.535374 | 1_3:+51240269 | Msa0123910:CDS |
| TATCCTGCACAAAATAGGAT+GGG | 0.538621 | 1_3:+51242458 | Msa0123910:three_prime_UTR |
| TGACGTGTTAAATAAGCACT+TGG | 0.539179 | 1_3:+51235666 | Msa0123910:five_prime_UTR |
| AGAAGATTGCCATTGTTGGT+GGG | 0.539271 | 1_3:+51237974 | Msa0123910:CDS |
| ACCAATGAAGCAAGCAGCAA+TGG | 0.540077 | 1_3:+51235713 | Msa0123910:exon |
| CCAGAGAGGGTGGCCTTCAG+TGG | 0.541109 | 1_3:-51240194 | None:intergenic |
| TGATGCTCCTGAAATTGTGC+AGG | 0.541563 | 1_3:+51240295 | Msa0123910:CDS |
| GCTGCCTTAGTGATAGCTAC+AGG | 0.541775 | 1_3:-51238249 | None:intergenic |
| GAGAAGATTGCCATTGTTGG+TGG | 0.542063 | 1_3:+51237973 | Msa0123910:CDS |
| TGCTAAAGATGGATCAATAG+AGG | 0.542879 | 1_3:+51239019 | Msa0123910:CDS |
| AATTTAGGACTGGAGTCTGT+TGG | 0.543197 | 1_3:+51238987 | Msa0123910:CDS |
| GAAGATTGCCATTGTTGGTG+GGG | 0.543504 | 1_3:+51237975 | Msa0123910:CDS |
| GTCAAGTTGATTGAAGGCCG+TGG | 0.546121 | 1_3:+51237685 | Msa0123910:CDS |
| GGGGTGAGCTCATTTGAAAA+GGG | 0.546489 | 1_3:+51242203 | Msa0123910:three_prime_UTR |
| GTCTGGAAGCCCAGAGAGGG+TGG | 0.547984 | 1_3:-51240204 | None:intergenic |
| GAGAGAAAGAGGAAGAGAGA+AGG | 0.549350 | 1_3:-51235820 | None:intergenic |
| CATCCTTACCTCAAAGGCAT+CGG | 0.552504 | 1_3:-51241118 | None:intergenic |
| ACCGCCACTACCAGCGCCGA+TGG | 0.553396 | 1_3:-51235952 | None:intergenic |
| CTCACACAGTTGATGTTGAT+GGG | 0.555032 | 1_3:+51237830 | Msa0123910:CDS |
| CTCTTTCGAATCTTCCTAGT+GGG | 0.556074 | 1_3:-51240505 | None:intergenic |
| GTAAGGGAGAAGAACAAGAG+AGG | 0.557001 | 1_3:-51235749 | None:intergenic |
| AGAGTGTTTCGGGTAAGTAA+GGG | 0.559652 | 1_3:-51235765 | None:intergenic |
| TTATCCTGCACAAAATAGGA+TGG | 0.562058 | 1_3:+51242457 | Msa0123910:three_prime_UTR |
| GTATTTCATCCTTACCTCAA+AGG | 0.564875 | 1_3:-51241124 | None:intergenic |
| CTCTCTTTAAAGACCAGCAA+AGG | 0.565512 | 1_3:+51238282 | Msa0123910:CDS |
| TGCGAGAATATAGTATCTAT+GGG | 0.569612 | 1_3:-51235639 | None:intergenic |
| ACCAGCAAAGGTACCGTGGA+TGG | 0.570642 | 1_3:+51238294 | Msa0123910:CDS |
| GTTGATTGAAGGCCGTGGAA+AGG | 0.572186 | 1_3:+51237690 | Msa0123910:CDS |
| AAGATTGCCATTGTTGGTGG+GGG | 0.574113 | 1_3:+51237976 | Msa0123910:CDS |
| ACCATCGGCGCTGGTAGTGG+CGG | 0.574781 | 1_3:+51235951 | Msa0123910:CDS |
| GAAGGAGCGAGAAAATGGGA+AGG | 0.576272 | 1_3:-51235802 | None:intergenic |
| GGTGTGAAGATTGCTAAAGA+TGG | 0.580574 | 1_3:+51239008 | Msa0123910:CDS |
| GTCCGCGCTGAATCGCAAAA+CGG | 0.581424 | 1_3:+51235891 | Msa0123910:CDS |
| GCAGAAAATATGGCTCTAAG+AGG | 0.582671 | 1_3:+51238201 | Msa0123910:CDS |
| GGTGGTATCCGATGAGATTG+TGG | 0.583547 | 1_3:-51236039 | None:intergenic |
| ATCCCTTTGTACATATTCAG+AGG | 0.583715 | 1_3:+51242286 | Msa0123910:three_prime_UTR |
| TGAATATGTACAAAGGGATG+AGG | 0.585149 | 1_3:-51242282 | None:intergenic |
| TCGGATACCACCGGAGGTGT+CGG | 0.586511 | 1_3:+51236050 | Msa0123910:CDS |
| CAGCGCGGACAGCGAAGGTG+CGG | 0.586569 | 1_3:-51235878 | None:intergenic |
| CCGGTCTGGAAGCCCAGAGA+GGG | 0.587282 | 1_3:-51240207 | None:intergenic |
| TCCGTTCTCCACAATCTCAT+CGG | 0.587909 | 1_3:+51236031 | Msa0123910:CDS |
| TCCGATGAGATTGTGGAGAA+CGG | 0.588939 | 1_3:-51236032 | None:intergenic |
| AATGAAGCAAAAGCTGTAGC+CGG | 0.591095 | 1_3:+51241048 | Msa0123910:CDS |
| CATTCACCCAACCGCAGCTG+AGG | 0.593036 | 1_3:+51240462 | Msa0123910:CDS |
| TTTCCTCTGAATATGTACAA+AGG | 0.595056 | 1_3:-51242289 | None:intergenic |
| TTCTCCCAACCACCAATTGG+AGG | 0.598183 | 1_3:+51239996 | Msa0123910:CDS |
| ACAATCTCATCGGATACCAC+CGG | 0.600837 | 1_3:+51236041 | Msa0123910:CDS |
| GCAGACTTTGATGCTACTGT+AGG | 0.605910 | 1_3:+51240439 | Msa0123910:CDS |
| GTCTCCTGTAGCTATCACTA+AGG | 0.610701 | 1_3:+51238245 | Msa0123910:CDS |
| TCACCATGAGGACTCCCACT+AGG | 0.611633 | 1_3:+51240491 | Msa0123910:CDS |
| TCTGGGTTTGCACATGTGTG+GGG | 0.615085 | 1_3:+51240271 | Msa0123910:CDS |
| CAAGACAATACATGAAATAG+CGG | 0.617151 | 1_3:+51242182 | Msa0123910:three_prime_UTR |
| TTTGCGAGGATTTGATGAAG+AGG | 0.617316 | 1_3:+51238077 | Msa0123910:CDS |
| AGAATCATCCCACCTTTCCA+CGG | 0.618295 | 1_3:-51237702 | None:intergenic |
| AAAGATACCAGCAAACTCCA+AGG | 0.619374 | 1_3:-51238007 | None:intergenic |
| ATCCTGCACAAAATAGGATG+GGG | 0.619402 | 1_3:+51242459 | Msa0123910:three_prime_UTR |
| TATTAAAGCTGGATTGACAA+AGG | 0.619694 | 1_3:+51240417 | Msa0123910:CDS |
| CCAGGAATATCAGGAATGAA+GGG | 0.621948 | 1_3:-51237898 | None:intergenic |
| CGAAGTCATAGTGGATGGCG+GGG | 0.627610 | 1_3:-51235920 | None:intergenic |
| CCATCAACATCAACTGTGTG+AGG | 0.629501 | 1_3:-51237829 | None:intergenic |
| AAGGTCGAAGTCATAGTGGA+TGG | 0.632605 | 1_3:-51235925 | None:intergenic |
| GTCGAAGTCATAGTGGATGG+CGG | 0.633614 | 1_3:-51235922 | None:intergenic |
| TGATGAATACTCTCAAACAT+CGG | 0.635283 | 1_3:+51239125 | Msa0123910:CDS |
| GCTATCACTAAGGCAGCTGA+TGG | 0.636893 | 1_3:+51238255 | Msa0123910:CDS |
| TGGAAGCAAAGCGAGAGGCA+CGG | 0.637345 | 1_3:-51235977 | None:intergenic |
| GTTGGAGTTGAGACACAGCA+TGG | 0.639703 | 1_3:+51242368 | Msa0123910:three_prime_UTR |
| TATTCAGAGGAAATCTCATG+AGG | 0.640406 | 1_3:+51242299 | Msa0123910:three_prime_UTR |
| AGACCAACTCCTCCAATTGG+TGG | 0.641871 | 1_3:-51240005 | None:intergenic |
| CGGACAGCGAAGGTGCGGCG+GGG | 0.644049 | 1_3:-51235873 | None:intergenic |
| GTGAGCTCATTTGAAAAGGG+CGG | 0.650229 | 1_3:+51242206 | Msa0123910:three_prime_UTR |
| GATACCACCGGAGGTGTCGG+TGG | 0.653585 | 1_3:+51236053 | Msa0123910:CDS |
| GGTGACAAACTCCTCAGCTG+CGG | 0.664472 | 1_3:-51240473 | None:intergenic |
| GCTCTTTCGAATCTTCCTAG+TGG | 0.665678 | 1_3:-51240506 | None:intergenic |
| ATTCAGAGGAAATCTCATGA+GGG | 0.669097 | 1_3:+51242300 | Msa0123910:three_prime_UTR |
| AAAATTGGAAGCAAAGCGAG+AGG | 0.687269 | 1_3:-51235982 | None:intergenic |
| AGACAATACATGAAATAGCG+GGG | 0.688655 | 1_3:+51242184 | Msa0123910:three_prime_UTR |
| AAAGACCAGCAAAGGTACCG+TGG | 0.688890 | 1_3:+51238290 | Msa0123910:CDS |
| CTGAGGAGTTTGTCACCATG+AGG | 0.689480 | 1_3:+51240479 | Msa0123910:CDS |
| CGTGCCACCGACACCTCCGG+TGG | 0.690117 | 1_3:-51236057 | None:intergenic |
| CCCGGTCTGGAAGCCCAGAG+AGG | 0.691224 | 1_3:-51240208 | None:intergenic |
| AGGTATTGAATTCCATACTG+AGG | 0.697204 | 1_3:+51238221 | Msa0123910:CDS |
| ATCTCATCGGATACCACCGG+AGG | 0.708892 | 1_3:+51236044 | Msa0123910:CDS |
| AATATGAGAGAAACCATCCA+CGG | 0.716565 | 1_3:-51238307 | None:intergenic |
| TTGTGCAGCTGTGTAATACG+TGG | 0.758121 | 1_3:+51237478 | Msa0123910:intron |
| TGGAGGAGTTGGTCTCACAG+AGG | 0.772688 | 1_3:+51240013 | Msa0123910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTTTAATATATTCTA+GGG | + | chr1_3:51241015-51241034 | Msa0123910:intron | 10.0% |
| !!! | TTTTTCTCTGAAAAAAAAAA+TGG | - | chr1_3:51236890-51236909 | None:intergenic | 15.0% |
| !!! | GATTTTTTGTATTGATTATT+AGG | + | chr1_3:51236981-51237000 | Msa0123910:intron | 15.0% |
| !!! | TTTTAGCATATGAAATAATT+TGG | + | chr1_3:51238490-51238509 | Msa0123910:intron | 15.0% |
| !! | TTTCCATATTTATCAAAATT+AGG | + | chr1_3:51238765-51238784 | Msa0123910:intron | 15.0% |
| !!! | ATTATGATTTACTAACATTT+TGG | + | chr1_3:51240111-51240130 | Msa0123910:intron | 15.0% |
| !! | AATATGATACTTAATTCATT+TGG | + | chr1_3:51240813-51240832 | Msa0123910:intron | 15.0% |
| !! | ATATGATACTTAATTCATTT+GGG | + | chr1_3:51240814-51240833 | Msa0123910:intron | 15.0% |
| !!! | GTTTTGTTTTAATATATTCT+AGG | + | chr1_3:51241014-51241033 | Msa0123910:intron | 15.0% |
| !!! | TTAAAAAAAATGGATTTTGT+AGG | - | chr1_3:51241356-51241375 | None:intergenic | 15.0% |
| !!! | TTTGATTAAATGATTTTTTG+TGG | + | chr1_3:51241543-51241562 | Msa0123910:intron | 15.0% |
| !! | ATGATTTATTCACAAAAAAA+AGG | + | chr1_3:51241583-51241602 | Msa0123910:intron | 15.0% |
| !! | AGTGAAAAATAAATTACAAA+TGG | - | chr1_3:51242258-51242277 | None:intergenic | 15.0% |
| !!! | GATCATTTTATTTAACATTA+AGG | - | chr1_3:51242327-51242346 | None:intergenic | 15.0% |
| !!! | TTTTAGTTAATTTCACAGTT+AGG | + | chr1_3:51236120-51236139 | Msa0123910:intron | 20.0% |
| !!! | ATTTGAATAACCAACTTTTT+AGG | + | chr1_3:51236508-51236527 | Msa0123910:intron | 20.0% |
| !! | AAATTAACAACCTAAAAAGT+TGG | - | chr1_3:51236521-51236540 | None:intergenic | 20.0% |
| !! | GTTAATTTAGTTGAAATATG+TGG | + | chr1_3:51236533-51236552 | Msa0123910:intron | 20.0% |
| !!! | TTTTAAGAGAAGCATTTATT+TGG | + | chr1_3:51236916-51236935 | Msa0123910:intron | 20.0% |
| !! | TTAAACAATCTTTAAACTGT+TGG | - | chr1_3:51237150-51237169 | None:intergenic | 20.0% |
| !! | TTACAAAGCTATTTATTACA+TGG | - | chr1_3:51237740-51237759 | None:intergenic | 20.0% |
| !!! | TAGTGCTTATAATCTTTTTT+TGG | - | chr1_3:51238454-51238473 | None:intergenic | 20.0% |
| !!! | GCTAAAAGAGTATTTTTTTT+TGG | - | chr1_3:51238477-51238496 | None:intergenic | 20.0% |
| !! | ATTCATGTAATATTAAGCAA+GGG | - | chr1_3:51238719-51238738 | None:intergenic | 20.0% |
| !! | TATTCATGTAATATTAAGCA+AGG | - | chr1_3:51238720-51238739 | None:intergenic | 20.0% |
| !!! | GTTCCTAATTTTGATAAATA+TGG | - | chr1_3:51238771-51238790 | None:intergenic | 20.0% |
| !! | AATGTATATTACCTATAATC+AGG | - | chr1_3:51239264-51239283 | None:intergenic | 20.0% |
| !! | ACAAGCATTAAAAATTGATT+TGG | + | chr1_3:51239424-51239443 | Msa0123910:intron | 20.0% |
| !! | TCATTTGTAGATATATTGAA+TGG | + | chr1_3:51239881-51239900 | Msa0123910:intron | 20.0% |
| !! | ATTCATATGGAAATGATATA+TGG | + | chr1_3:51240857-51240876 | Msa0123910:intron | 20.0% |
| !! | AATGATATATGGTACAAAAT+TGG | + | chr1_3:51240868-51240887 | Msa0123910:intron | 20.0% |
| !! | ATGATATATGGTACAAAATT+GGG | + | chr1_3:51240869-51240888 | Msa0123910:intron | 20.0% |
| !!! | TTTTCTAAAAGTTTTCGTAA+TGG | + | chr1_3:51240989-51241008 | Msa0123910:intron | 20.0% |
| !!! | TTTTGTAGGTAATAAGAAAT+GGG | - | chr1_3:51241342-51241361 | None:intergenic | 20.0% |
| !!! | ATTTTGTAGGTAATAAGAAA+TGG | - | chr1_3:51241343-51241362 | None:intergenic | 20.0% |
| !!! | AAGGTTTAAAATGATTAAGT+TGG | + | chr1_3:51241602-51241621 | Msa0123910:intron | 20.0% |
| !!! | ATTTTTAATAATGTTTACGC+AGG | + | chr1_3:51242123-51242142 | Msa0123910:intron | 20.0% |
| ! | AGATGTTGTTAATATGATGT+GGG | + | chr1_3:51236205-51236224 | Msa0123910:intron | 25.0% |
| ! | AATGAGAACGTTGTAAAAAA+TGG | + | chr1_3:51236297-51236316 | Msa0123910:intron | 25.0% |
| ! | AACGTTGTAAAAAATGGAAT+TGG | + | chr1_3:51236303-51236322 | Msa0123910:intron | 25.0% |
| ! | TGGCTAATAACATGATATTA+TGG | + | chr1_3:51236323-51236342 | Msa0123910:intron | 25.0% |
| ! | TTGAAATATGTGGTTAATCA+TGG | + | chr1_3:51236543-51236562 | Msa0123910:intron | 25.0% |
| ! | TAATCATGGTATATAGTTCA+TGG | + | chr1_3:51236557-51236576 | Msa0123910:intron | 25.0% |
| ! | GTTAGAAGAACACATATATT+AGG | + | chr1_3:51236771-51236790 | Msa0123910:intron | 25.0% |
| !!! | TTTGTATTGATTATTAGGAG+TGG | + | chr1_3:51236986-51237005 | Msa0123910:intron | 25.0% |
| !!! | TTGTATTGATTATTAGGAGT+GGG | + | chr1_3:51236987-51237006 | Msa0123910:intron | 25.0% |
| !! | ATTTTCCAAAAACCAAATAC+GGG | - | chr1_3:51237117-51237136 | None:intergenic | 25.0% |
| !! | CATTTTCCAAAAACCAAATA+CGG | - | chr1_3:51237118-51237137 | None:intergenic | 25.0% |
| ! | TACATTCAATAGACAGTTAA+TGG | - | chr1_3:51237346-51237365 | None:intergenic | 25.0% |
| !! | AACTTTCATGACAACTTTTA+AGG | - | chr1_3:51237399-51237418 | None:intergenic | 25.0% |
| ! | TCATGAAAGTTGTTCAAATT+TGG | + | chr1_3:51237408-51237427 | Msa0123910:intron | 25.0% |
| !! | AAATTCGTGAGAAAATTTTG+AGG | - | chr1_3:51237533-51237552 | None:intergenic | 25.0% |
| ! | AGCTATTTATTACATGGAAA+TGG | - | chr1_3:51237734-51237753 | None:intergenic | 25.0% |
| ! | AACTGAAACTAAAATGTGTT+TGG | - | chr1_3:51237869-51237888 | None:intergenic | 25.0% |
| !!! | AAACACATTTTAGTTTCAGT+TGG | + | chr1_3:51237868-51237887 | Msa0123910:CDS | 25.0% |
| ! | AAACTTCATACCTTAGTATT+AGG | - | chr1_3:51238354-51238373 | None:intergenic | 25.0% |
| ! | TAGCATATGAAATAATTTGG+AGG | + | chr1_3:51238493-51238512 | Msa0123910:intron | 25.0% |
| ! | AGCATATGAAATAATTTGGA+GGG | + | chr1_3:51238494-51238513 | Msa0123910:intron | 25.0% |
| ! | TTCTGATTGAAGGTAATTAT+TGG | - | chr1_3:51238540-51238559 | None:intergenic | 25.0% |
| ! | TTCATGTAATATTAAGCAAG+GGG | - | chr1_3:51238718-51238737 | None:intergenic | 25.0% |
| ! | ATTATAAATGGTTAAGCAGT+TGG | - | chr1_3:51239384-51239403 | None:intergenic | 25.0% |
| !! | TTACACCATTGTTTCTTAAA+TGG | + | chr1_3:51239595-51239614 | Msa0123910:intron | 25.0% |
| ! | AGAATATAACACAATCTGTT+AGG | - | chr1_3:51239946-51239965 | None:intergenic | 25.0% |
| !! | CTATTAGTTTCATAAAAACC+CGG | - | chr1_3:51240229-51240248 | None:intergenic | 25.0% |
| !! | TAAGATTTTGCATGATAAAC+AGG | + | chr1_3:51240381-51240400 | Msa0123910:intron | 25.0% |
| !! | AAGATTTTGCATGATAAACA+GGG | + | chr1_3:51240382-51240401 | Msa0123910:intron | 25.0% |
| ! | AAAGCAATATTGTTAAGTTC+CGG | - | chr1_3:51241070-51241089 | None:intergenic | 25.0% |
| !! | AGAACTTTTGTGTTATACTA+TGG | + | chr1_3:51241202-51241221 | Msa0123910:intron | 25.0% |
| ! | TAATAAGAAATGGGAAATTG+GGG | - | chr1_3:51241333-51241352 | None:intergenic | 25.0% |
| ! | GTAATAAGAAATGGGAAATT+GGG | - | chr1_3:51241334-51241353 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCTCTCCATTGA+TGG | + | chr1_3:51241375-51241394 | Msa0123910:intron | 25.0% |
| ! | TAGTTACAAAACTCAGAATT+TGG | + | chr1_3:51241428-51241447 | Msa0123910:intron | 25.0% |
| !! | ACAAAATTTGAAGTATCTTG+TGG | + | chr1_3:51241460-51241479 | Msa0123910:intron | 25.0% |
| !! | CAAAATTTGAAGTATCTTGT+GGG | + | chr1_3:51241461-51241480 | Msa0123910:intron | 25.0% |
| !! | AAAAGACTTGACTACATTTT+CGG | - | chr1_3:51241734-51241753 | None:intergenic | 25.0% |
| !!! | CTTATTTAATTTGAAGCAGT+TGG | + | chr1_3:51242350-51242369 | Msa0123910:three_prime_UTR | 25.0% |
| ! | TAATTTATCCTGCACAAAAT+AGG | + | chr1_3:51242453-51242472 | Msa0123910:three_prime_UTR | 25.0% |
| TGCGAGAATATAGTATCTAT+GGG | - | chr1_3:51235642-51235661 | None:intergenic | 30.0% | |
| ATGCGAGAATATAGTATCTA+TGG | - | chr1_3:51235643-51235662 | None:intergenic | 30.0% | |
| TTCGTAAAACTTAGCTCATT+TGG | - | chr1_3:51236178-51236197 | None:intergenic | 30.0% | |
| CACATCATATTAACAACATC+TGG | - | chr1_3:51236206-51236225 | None:intergenic | 30.0% | |
| CAGATGTTGTTAATATGATG+TGG | + | chr1_3:51236204-51236223 | Msa0123910:intron | 30.0% | |
| AGCAAATTAGCAAGTCAATA+AGG | - | chr1_3:51236425-51236444 | None:intergenic | 30.0% | |
| AATGTTTAACCAAAGCGAAA+AGG | - | chr1_3:51236448-51236467 | None:intergenic | 30.0% | |
| !! | TTCTCGTGTTTTTGTCAAAT+GGG | - | chr1_3:51236643-51236662 | None:intergenic | 30.0% |
| !! | ATTCTCGTGTTTTTGTCAAA+TGG | - | chr1_3:51236644-51236663 | None:intergenic | 30.0% |
| AACACGAGAATTAAGAAAGT+TGG | + | chr1_3:51236653-51236672 | Msa0123910:intron | 30.0% | |
| CTCTCTATGATGAAATCATT+GGG | - | chr1_3:51236731-51236750 | None:intergenic | 30.0% | |
| AGAAGAACACATATATTAGG+AGG | + | chr1_3:51236774-51236793 | Msa0123910:intron | 30.0% | |
| TTAAGATTTGAACACTAGAC+TGG | + | chr1_3:51236802-51236821 | Msa0123910:intron | 30.0% | |
| ! | AATTGTGTGTATCTAAAACC+AGG | + | chr1_3:51237079-51237098 | Msa0123910:intron | 30.0% |
| ! | ATTGTGTGTATCTAAAACCA+GGG | + | chr1_3:51237080-51237099 | Msa0123910:intron | 30.0% |
| !!! | CGTATTTGGTTTTTGGAAAA+TGG | + | chr1_3:51237116-51237135 | Msa0123910:intron | 30.0% |
| ATCTAAAGACTTGAAAGTAG+TGG | - | chr1_3:51237243-51237262 | None:intergenic | 30.0% | |
| AGTTGAACACCTGAAAATTA+TGG | + | chr1_3:51237271-51237290 | Msa0123910:intron | 30.0% | |
| ATCTCATTAACCACGTATTT+GGG | - | chr1_3:51237306-51237325 | None:intergenic | 30.0% | |
| AATCTCATTAACCACGTATT+TGG | - | chr1_3:51237307-51237326 | None:intergenic | 30.0% | |
| !! | TTTCATGACAACTTTTAAGG+CGG | - | chr1_3:51237396-51237415 | None:intergenic | 30.0% |
| ! | TTTGAAGAAAGCAATGGTTT+TGG | + | chr1_3:51237550-51237569 | Msa0123910:CDS | 30.0% |
| !! | TCTAATGTCAAGTTGATTGA+AGG | + | chr1_3:51237679-51237698 | Msa0123910:CDS | 30.0% |
| !! | AGGTTTTGATGGTAAATCAA+GGG | - | chr1_3:51237953-51237972 | None:intergenic | 30.0% |
| TGTATTTATACGACAAAAGC+AGG | + | chr1_3:51238053-51238072 | Msa0123910:CDS | 30.0% | |
| ! | AGATTTTGTCGCAGAAAATA+TGG | + | chr1_3:51238191-51238210 | Msa0123910:CDS | 30.0% |
| ! | TCTCATATTATGTTTGCTAC+AGG | + | chr1_3:51238321-51238340 | Msa0123910:CDS | 30.0% |
| GATTGAAGGTAATTATTGGA+AGG | - | chr1_3:51238536-51238555 | None:intergenic | 30.0% | |
| TTCAATGACTTTCTGATTGA+AGG | - | chr1_3:51238550-51238569 | None:intergenic | 30.0% | |
| CAATCAGAAAGTCATTGAAA+AGG | + | chr1_3:51238551-51238570 | Msa0123910:intron | 30.0% | |
| ! | TTTTCCCATGATACACTTTT+AGG | + | chr1_3:51238650-51238669 | Msa0123910:intron | 30.0% |
| ! | AAGTCCTAAAAGTGTATCAT+GGG | - | chr1_3:51238657-51238676 | None:intergenic | 30.0% |
| TTAAAATTAGCCAACCCTTA+AGG | - | chr1_3:51238810-51238829 | None:intergenic | 30.0% | |
| AGATAAACAGACAGTTGAAA+CGG | - | chr1_3:51238902-51238921 | None:intergenic | 30.0% | |
| TACAGAAAGAGCTAATAACA+TGG | + | chr1_3:51238931-51238950 | Msa0123910:intron | 30.0% | |
| ACAATTTCACTGCAGAATTT+AGG | + | chr1_3:51238972-51238991 | Msa0123910:intron | 30.0% | |
| TGATGAATACTCTCAAACAT+CGG | + | chr1_3:51239125-51239144 | Msa0123910:CDS | 30.0% | |
| !! | TACCTATAATCAGGTTTTGT+TGG | - | chr1_3:51239255-51239274 | None:intergenic | 30.0% |
| ACTGAAGTCAATCTTTAATC+AGG | - | chr1_3:51239309-51239328 | None:intergenic | 30.0% | |
| ATCAGGGAGATCATTATAAA+TGG | - | chr1_3:51239396-51239415 | None:intergenic | 30.0% | |
| ! | GTTTTTGACACGAATTTGTA+TGG | + | chr1_3:51239536-51239555 | Msa0123910:intron | 30.0% |
| ! | GAGCTTTAATGGTTTAAAAG+AGG | + | chr1_3:51239664-51239683 | Msa0123910:intron | 30.0% |
| CTTTAATGGTTTAAAAGAGG+TGG | + | chr1_3:51239667-51239686 | Msa0123910:intron | 30.0% | |
| GTGCAAAAAATGAGATGAAT+AGG | - | chr1_3:51239831-51239850 | None:intergenic | 30.0% | |
| ATATAACACAATCTGTTAGG+AGG | - | chr1_3:51239943-51239962 | None:intergenic | 30.0% | |
| !!! | AACATTTTGGTTATTTGCAC+AGG | + | chr1_3:51240124-51240143 | Msa0123910:intron | 30.0% |
| TGCAAAAACAAATGAAGTTC+TGG | + | chr1_3:51240253-51240272 | Msa0123910:CDS | 30.0% | |
| GCAAAAACAAATGAAGTTCT+GGG | + | chr1_3:51240254-51240273 | Msa0123910:CDS | 30.0% | |
| ! | AGATTTTGCATGATAAACAG+GGG | + | chr1_3:51240383-51240402 | Msa0123910:intron | 30.0% |
| TATTAAAGCTGGATTGACAA+AGG | + | chr1_3:51240417-51240436 | Msa0123910:CDS | 30.0% | |
| ATTTCTGCACAAGATATCAA+CGG | - | chr1_3:51240573-51240592 | None:intergenic | 30.0% | |
| TCTTTCAATTCTCAAGTACA+AGG | - | chr1_3:51240671-51240690 | None:intergenic | 30.0% | |
| AAAAAAAAAAATCCCTGTGC+AGG | + | chr1_3:51240718-51240737 | Msa0123910:intron | 30.0% | |
| ACCACATGTCATTATTCATA+TGG | + | chr1_3:51240844-51240863 | Msa0123910:intron | 30.0% | |
| TCCATATGAATAATGACATG+TGG | - | chr1_3:51240848-51240867 | None:intergenic | 30.0% | |
| !! | CATTTCCAACCATGTTTTTA+TGG | + | chr1_3:51240943-51240962 | Msa0123910:intron | 30.0% |
| CTAAGAGAACCATAAAAACA+TGG | - | chr1_3:51240955-51240974 | None:intergenic | 30.0% | |
| GTATACTAGATACTAGGTTT+AGG | + | chr1_3:51241227-51241246 | Msa0123910:intron | 30.0% | |
| TCTCTATTATTATCAACCCT+TGG | + | chr1_3:51241269-51241288 | Msa0123910:intron | 30.0% | |
| ! | TTATTATCAACCCTTGGTTT+TGG | + | chr1_3:51241275-51241294 | Msa0123910:intron | 30.0% |
| TATTGAATGTCCAAAACCAA+GGG | - | chr1_3:51241288-51241307 | None:intergenic | 30.0% | |
| TTATTGAATGTCCAAAACCA+AGG | - | chr1_3:51241289-51241308 | None:intergenic | 30.0% | |
| GGTAATAAGAAATGGGAAAT+TGG | - | chr1_3:51241335-51241354 | None:intergenic | 30.0% | |
| !! | ATGTGGAGATTTTTAGGAAA+AGG | + | chr1_3:51241631-51241650 | Msa0123910:intron | 30.0% |
| !! | TGTGGAGATTTTTAGGAAAA+GGG | + | chr1_3:51241632-51241651 | Msa0123910:intron | 30.0% |
| !! | TTTTTAGGAAAAGGGGAATT+TGG | + | chr1_3:51241640-51241659 | Msa0123910:intron | 30.0% |
| !! | TTTTAGGAAAAGGGGAATTT+GGG | + | chr1_3:51241641-51241660 | Msa0123910:intron | 30.0% |
| ATCTTATCCATGTGTTATAG+CGG | + | chr1_3:51241757-51241776 | Msa0123910:intron | 30.0% | |
| !!! | TGGTAGTGGATTTTATACAA+TGG | - | chr1_3:51241886-51241905 | None:intergenic | 30.0% |
| GTTCAAAGAATAAGTAGTAG+TGG | - | chr1_3:51241906-51241925 | None:intergenic | 30.0% | |
| CAAGACAATACATGAAATAG+CGG | + | chr1_3:51242182-51242201 | Msa0123910:three_prime_UTR | 30.0% | |
| AAGACAATACATGAAATAGC+GGG | + | chr1_3:51242183-51242202 | Msa0123910:three_prime_UTR | 30.0% | |
| TTCCTCTGAATATGTACAAA+GGG | - | chr1_3:51242291-51242310 | None:intergenic | 30.0% | |
| TTTCCTCTGAATATGTACAA+AGG | - | chr1_3:51242292-51242311 | None:intergenic | 30.0% | |
| ! | AACTTTTCAAACTTTTCGCA+TGG | + | chr1_3:51242420-51242439 | Msa0123910:three_prime_UTR | 30.0% |
| TGACGTGTTAAATAAGCACT+TGG | + | chr1_3:51235666-51235685 | Msa0123910:five_prime_UTR | 35.0% | |
| ! | TGGTGAAGAATAGAGTGTTT+CGG | - | chr1_3:51235779-51235798 | None:intergenic | 35.0% |
| TAAAAAGGTCGAAGTCATAG+TGG | - | chr1_3:51235932-51235951 | None:intergenic | 35.0% | |
| GAATAAGAAACCCTAAGCTA+TGG | - | chr1_3:51236095-51236114 | None:intergenic | 35.0% | |
| TTATACCGATATTGCTAGGT+TGG | - | chr1_3:51236155-51236174 | None:intergenic | 35.0% | |
| TTGGTTATACCGATATTGCT+AGG | - | chr1_3:51236159-51236178 | None:intergenic | 35.0% | |
| !!! | TAATTTGCTCCTTTTCGCTT+TGG | + | chr1_3:51236436-51236455 | Msa0123910:intron | 35.0% |
| !! | TCTCGTGTTTTTGTCAAATG+GGG | - | chr1_3:51236642-51236661 | None:intergenic | 35.0% |
| GCTCTCTATGATGAAATCAT+TGG | - | chr1_3:51236732-51236751 | None:intergenic | 35.0% | |
| ! | ATTTGAACACTAGACTGGTT+GGG | + | chr1_3:51236807-51236826 | Msa0123910:intron | 35.0% |
| !! | TTATTTGGCTTGTTGAAGTG+TGG | + | chr1_3:51236931-51236950 | Msa0123910:intron | 35.0% |
| AAAACCAAATACGGGATAAC+CGG | - | chr1_3:51237109-51237128 | None:intergenic | 35.0% | |
| !!! | GTTATCCCGTATTTGGTTTT+TGG | + | chr1_3:51237109-51237128 | Msa0123910:intron | 35.0% |
| !! | GGTTTTTGGAAAATGGTACT+TGG | + | chr1_3:51237123-51237142 | Msa0123910:intron | 35.0% |
| TTAACAGCTACTGAAGTTAG+AGG | - | chr1_3:51237205-51237224 | None:intergenic | 35.0% | |
| ! | CGTGGTTAACCATAATTTTC+AGG | - | chr1_3:51237283-51237302 | None:intergenic | 35.0% |
| GTCAACACAGTTTAAATGAG+TGG | - | chr1_3:51237374-51237393 | None:intergenic | 35.0% | |
| CACAAAGATATGCATGTAGA+TGG | - | chr1_3:51237463-51237482 | None:intergenic | 35.0% | |
| GCATAGACGAGTAATTTCTT+TGG | - | chr1_3:51237511-51237530 | None:intergenic | 35.0% | |
| CACGAATTTGAAGAAAGCAA+TGG | + | chr1_3:51237544-51237563 | Msa0123910:CDS | 35.0% | |
| !!! | AAGAAAGCAATGGTTTTGGA+TGG | + | chr1_3:51237554-51237573 | Msa0123910:CDS | 35.0% |
| AAACTACTCCAATCATGCTT+AGG | - | chr1_3:51237595-51237614 | None:intergenic | 35.0% | |
| ATAAAAATGCTGAGTTGCAG+AGG | + | chr1_3:51237623-51237642 | Msa0123910:CDS | 35.0% | |
| !!! | CACATTTTAGTTTCAGTTGG+AGG | + | chr1_3:51237871-51237890 | Msa0123910:CDS | 35.0% |
| TATTCCTTTCCAGGAATATC+AGG | - | chr1_3:51237910-51237929 | None:intergenic | 35.0% | |
| TCTATTGCATATTCCTTTCC+AGG | - | chr1_3:51237919-51237938 | None:intergenic | 35.0% | |
| !! | CAGGTTTTGATGGTAAATCA+AGG | - | chr1_3:51237954-51237973 | None:intergenic | 35.0% |
| !! | GAGTTTGCTGGTATCTTTAA+TGG | + | chr1_3:51238012-51238031 | Msa0123910:CDS | 35.0% |
| !! | AGGTATTGAATTCCATACTG+AGG | + | chr1_3:51238221-51238240 | Msa0123910:CDS | 35.0% |
| AATATGAGAGAAACCATCCA+CGG | - | chr1_3:51238310-51238329 | None:intergenic | 35.0% | |
| !! | GATGCTAAAAGAGTATTTGC+TGG | - | chr1_3:51238427-51238446 | None:intergenic | 35.0% |
| ! | CAAGTCCTAAAAGTGTATCA+TGG | - | chr1_3:51238658-51238677 | None:intergenic | 35.0% |
| AATTCCACATGCTTCTTAGT+TGG | + | chr1_3:51238828-51238847 | Msa0123910:intron | 35.0% | |
| ! | TAGTTGGCTCAATTTCCATA+CGG | + | chr1_3:51238844-51238863 | Msa0123910:intron | 35.0% |
| TGCTAAAGATGGATCAATAG+AGG | + | chr1_3:51239019-51239038 | Msa0123910:CDS | 35.0% | |
| !! | TTGAGAGTATTCATCAACCT+GGG | - | chr1_3:51239121-51239140 | None:intergenic | 35.0% |
| !! | TTTGAGAGTATTCATCAACC+TGG | - | chr1_3:51239122-51239141 | None:intergenic | 35.0% |
| !! | AAACATCGGTTCCTTCAATT+TGG | + | chr1_3:51239139-51239158 | Msa0123910:CDS | 35.0% |
| !! | AACATCGGTTCCTTCAATTT+GGG | + | chr1_3:51239140-51239159 | Msa0123910:CDS | 35.0% |
| AGCCAACAAAACCTGATTAT+AGG | + | chr1_3:51239250-51239269 | Msa0123910:CDS | 35.0% | |
| ! | ATGCTTGTTAAGCAAGATCA+GGG | - | chr1_3:51239412-51239431 | None:intergenic | 35.0% |
| ! | AATGCTTGTTAAGCAAGATC+AGG | - | chr1_3:51239413-51239432 | None:intergenic | 35.0% |
| GGTTTAAAAGAGGTGGAAAA+AGG | + | chr1_3:51239674-51239693 | Msa0123910:intron | 35.0% | |
| GGAAAAAGGAAAATGACTAG+AGG | + | chr1_3:51239688-51239707 | Msa0123910:intron | 35.0% | |
| TTGAATGGCAGCATATAATC+TGG | + | chr1_3:51239896-51239915 | Msa0123910:intron | 35.0% | |
| ! | ACGTCTACACAGCAAATTTT+AGG | + | chr1_3:51240171-51240190 | Msa0123910:CDS | 35.0% |
| ACAAAAACCTGCACAATTTC+AGG | - | chr1_3:51240305-51240324 | None:intergenic | 35.0% | |
| ! | TTTGCAGTTGCTATTAAAGC+TGG | + | chr1_3:51240406-51240425 | Msa0123910:CDS | 35.0% |
| CTTGATTTACCTGTGAATCA+AGG | - | chr1_3:51240531-51240550 | None:intergenic | 35.0% | |
| CTTGATTCACAGGTAAATCA+AGG | + | chr1_3:51240529-51240548 | Msa0123910:intron | 35.0% | |
| GAAGTCGACGTATTCATTAA+TGG | - | chr1_3:51240643-51240662 | None:intergenic | 35.0% | |
| AATTCTCAAGTACAAGGCAA+CGG | - | chr1_3:51240665-51240684 | None:intergenic | 35.0% | |
| TTAACAGACCCAAGTAATCA+TGG | - | chr1_3:51240744-51240763 | None:intergenic | 35.0% | |
| GAGAACCATAAAAACATGGT+TGG | - | chr1_3:51240951-51240970 | None:intergenic | 35.0% | |
| GTATTTCATCCTTACCTCAA+AGG | - | chr1_3:51241127-51241146 | None:intergenic | 35.0% | |
| ATGGCAGTATACTAGATACT+AGG | + | chr1_3:51241221-51241240 | Msa0123910:intron | 35.0% | |
| GTCTGTAAAGGAGAAATTTC+AGG | + | chr1_3:51241497-51241516 | Msa0123910:intron | 35.0% | |
| ! | TTCAGCATGTGGAGATTTTT+AGG | + | chr1_3:51241625-51241644 | Msa0123910:intron | 35.0% |
| !! | GTGGAGATTTTTAGGAAAAG+GGG | + | chr1_3:51241633-51241652 | Msa0123910:intron | 35.0% |
| TTTAGGAAAAGGGGAATTTG+GGG | + | chr1_3:51241642-51241661 | Msa0123910:intron | 35.0% | |
| AGAATAAGTAGTAGTGGTAG+TGG | - | chr1_3:51241900-51241919 | None:intergenic | 35.0% | |
| !!! | ACATACATTCCTGCCATTTT+GGG | - | chr1_3:51241966-51241985 | None:intergenic | 35.0% |
| !! | AACATACATTCCTGCCATTT+TGG | - | chr1_3:51241967-51241986 | None:intergenic | 35.0% |
| TTACCAATGCAACATGTTTC+CGG | + | chr1_3:51242014-51242033 | Msa0123910:intron | 35.0% | |
| TATTAGAACATGACAAACGC+CGG | - | chr1_3:51242036-51242055 | None:intergenic | 35.0% | |
| !!! | TTGCTTTTTCGAATGATCTC+CGG | + | chr1_3:51242147-51242166 | Msa0123910:three_prime_UTR | 35.0% |
| AGACAATACATGAAATAGCG+GGG | + | chr1_3:51242184-51242203 | Msa0123910:three_prime_UTR | 35.0% | |
| TGAATATGTACAAAGGGATG+AGG | - | chr1_3:51242285-51242304 | None:intergenic | 35.0% | |
| ATCCCTTTGTACATATTCAG+AGG | + | chr1_3:51242286-51242305 | Msa0123910:three_prime_UTR | 35.0% | |
| TATTCAGAGGAAATCTCATG+AGG | + | chr1_3:51242299-51242318 | Msa0123910:three_prime_UTR | 35.0% | |
| ATTCAGAGGAAATCTCATGA+GGG | + | chr1_3:51242300-51242319 | Msa0123910:three_prime_UTR | 35.0% | |
| ! | AAACTTTTCGCATGGAAAAG+TGG | + | chr1_3:51242428-51242447 | Msa0123910:three_prime_UTR | 35.0% |
| TTATCCTGCACAAAATAGGA+TGG | + | chr1_3:51242457-51242476 | Msa0123910:three_prime_UTR | 35.0% | |
| TATCCTGCACAAAATAGGAT+GGG | + | chr1_3:51242458-51242477 | Msa0123910:three_prime_UTR | 35.0% | |
| TAAGGGAGAAGAACAAGAGA+GGG | - | chr1_3:51235751-51235770 | None:intergenic | 40.0% | |
| ! | AGAGTGTTTCGGGTAAGTAA+GGG | - | chr1_3:51235768-51235787 | None:intergenic | 40.0% |
| ! | TAGAGTGTTTCGGGTAAGTA+AGG | - | chr1_3:51235769-51235788 | None:intergenic | 40.0% |
| ! | GGTGAAGAATAGAGTGTTTC+GGG | - | chr1_3:51235778-51235797 | None:intergenic | 40.0% |
| ! | GACTTCGACCTTTTTACCAT+CGG | + | chr1_3:51235936-51235955 | Msa0123910:CDS | 40.0% |
| AAAATTGGAAGCAAAGCGAG+AGG | - | chr1_3:51235985-51236004 | None:intergenic | 40.0% | |
| ! | TCTCGCTTTGCTTCCAATTT+TGG | + | chr1_3:51235984-51236003 | Msa0123910:CDS | 40.0% |
| AAGTTCCTCTTCCATAGCTT+AGG | + | chr1_3:51236081-51236100 | Msa0123910:intron | 40.0% | |
| AGTTCCTCTTCCATAGCTTA+GGG | + | chr1_3:51236082-51236101 | Msa0123910:intron | 40.0% | |
| AGTGTCCAACCTAGCAATAT+CGG | + | chr1_3:51236147-51236166 | Msa0123910:intron | 40.0% | |
| CATCTGCTTTCAGAAAGACA+CGG | - | chr1_3:51236484-51236503 | None:intergenic | 40.0% | |
| CTACCCTCGTCTCTAAATAT+AGG | + | chr1_3:51236615-51236634 | Msa0123910:intron | 40.0% | |
| GGTCCTATATTTAGAGACGA+GGG | - | chr1_3:51236621-51236640 | None:intergenic | 40.0% | |
| GATTTGAACACTAGACTGGT+TGG | + | chr1_3:51236806-51236825 | Msa0123910:intron | 40.0% | |
| CTTGTTGAAGTGTGGTATTG+TGG | + | chr1_3:51236939-51236958 | Msa0123910:intron | 40.0% | |
| ! | TTTAAGAGAGAGTGTGAGAG+AGG | + | chr1_3:51237165-51237184 | Msa0123910:intron | 40.0% |
| ACAGTGAACCTAAGCATGAT+TGG | + | chr1_3:51237584-51237603 | Msa0123910:CDS | 40.0% | |
| ! | CTCACACAGTTGATGTTGAT+GGG | + | chr1_3:51237830-51237849 | Msa0123910:CDS | 40.0% |
| CCAGGAATATCAGGAATGAA+GGG | - | chr1_3:51237901-51237920 | None:intergenic | 40.0% | |
| TCCAGGAATATCAGGAATGA+AGG | - | chr1_3:51237902-51237921 | None:intergenic | 40.0% | |
| CATTCCTGATATTCCTGGAA+AGG | + | chr1_3:51237903-51237922 | Msa0123910:CDS | 40.0% | |
| !! | GCAATCTTCTCAGGTTTTGA+TGG | - | chr1_3:51237964-51237983 | None:intergenic | 40.0% |
| AGAAGATTGCCATTGTTGGT+GGG | + | chr1_3:51237974-51237993 | Msa0123910:CDS | 40.0% | |
| AAAGATACCAGCAAACTCCA+AGG | - | chr1_3:51238010-51238029 | None:intergenic | 40.0% | |
| TTTGCGAGGATTTGATGAAG+AGG | + | chr1_3:51238077-51238096 | Msa0123910:CDS | 40.0% | |
| !! | GCAGAAAATATGGCTCTAAG+AGG | + | chr1_3:51238201-51238220 | Msa0123910:CDS | 40.0% |
| ! | CTCTCTTTAAAGACCAGCAA+AGG | + | chr1_3:51238282-51238301 | Msa0123910:CDS | 40.0% |
| AGGACGCAAACCTAATACTA+AGG | + | chr1_3:51238341-51238360 | Msa0123910:CDS | 40.0% | |
| AATATTAAGCAAGGGGCTGA+AGG | - | chr1_3:51238711-51238730 | None:intergenic | 40.0% | |
| ATTGAACTCCAGTGTCCTTA+AGG | + | chr1_3:51238792-51238811 | Msa0123910:intron | 40.0% | |
| TTGAACTCCAGTGTCCTTAA+GGG | + | chr1_3:51238793-51238812 | Msa0123910:intron | 40.0% | |
| ! | TTCACTGCAGAATTTAGGAC+TGG | + | chr1_3:51238977-51238996 | Msa0123910:intron | 40.0% |
| ! | AATTTAGGACTGGAGTCTGT+TGG | + | chr1_3:51238987-51239006 | Msa0123910:CDS | 40.0% |
| GGTGTGAAGATTGCTAAAGA+TGG | + | chr1_3:51239008-51239027 | Msa0123910:CDS | 40.0% | |
| ATTCATCAACCTGGGTGAAT+AGG | - | chr1_3:51239113-51239132 | None:intergenic | 40.0% | |
| GTTCCTTCAATTTGGGCAAT+CGG | + | chr1_3:51239147-51239166 | Msa0123910:CDS | 40.0% | |
| GATGATATACAACCACACAC+TGG | - | chr1_3:51239334-51239353 | None:intergenic | 40.0% | |
| TGACACGAATTTGTATGGTG+AGG | + | chr1_3:51239541-51239560 | Msa0123910:intron | 40.0% | |
| ! | CATCATGACGAGAGCTTTAA+TGG | + | chr1_3:51239653-51239672 | Msa0123910:intron | 40.0% |
| CAGAAGATCATTGATCTCGA+TGG | - | chr1_3:51240069-51240088 | None:intergenic | 40.0% | |
| ! | AGCAAATTTTAGGCCACTGA+AGG | + | chr1_3:51240181-51240200 | Msa0123910:CDS | 40.0% |
| AGTTTCATAAAAACCCGGTC+TGG | - | chr1_3:51240224-51240243 | None:intergenic | 40.0% | |
| CTCTTTCGAATCTTCCTAGT+GGG | - | chr1_3:51240508-51240527 | None:intergenic | 40.0% | |
| AAGATATCAACGGAAGACAC+TGG | - | chr1_3:51240563-51240582 | None:intergenic | 40.0% | |
| TAGTATGCTGAACAGAATGC+AGG | - | chr1_3:51240599-51240618 | None:intergenic | 40.0% | |
| ATTGCTAGACTTCTTCGTGA+GGG | - | chr1_3:51240796-51240815 | None:intergenic | 40.0% | |
| TATTGCTAGACTTCTTCGTG+AGG | - | chr1_3:51240797-51240816 | None:intergenic | 40.0% | |
| TGGTTCTCTTAGCATGCTAT+TGG | + | chr1_3:51240963-51240982 | Msa0123910:intron | 40.0% | |
| ! | ACAGCTTTTGCTTCATTGTC+TGG | - | chr1_3:51241045-51241064 | None:intergenic | 40.0% |
| AATGAAGCAAAAGCTGTAGC+CGG | + | chr1_3:51241048-51241067 | Msa0123910:CDS | 40.0% | |
| CATTCGTCATGAACCATCAA+TGG | - | chr1_3:51241391-51241410 | None:intergenic | 40.0% | |
| ! | TTGATGGTTCATGACGAATG+TGG | + | chr1_3:51241391-51241410 | Msa0123910:intron | 40.0% |
| TGATGGTTCATGACGAATGT+GGG | + | chr1_3:51241392-51241411 | Msa0123910:intron | 40.0% | |
| ATCTTGTGGGAAGCAAGTTT+AGG | + | chr1_3:51241474-51241493 | Msa0123910:intron | 40.0% | |
| TCTTGTGGGAAGCAAGTTTA+GGG | + | chr1_3:51241475-51241494 | Msa0123910:intron | 40.0% | |
| ! | AGCAAGTTTAGGGTCTGTAA+AGG | + | chr1_3:51241485-51241504 | Msa0123910:intron | 40.0% |
| !! | GATTAAGTTGGTTCAGCATG+TGG | + | chr1_3:51241614-51241633 | Msa0123910:intron | 40.0% |
| TTAGGAAAAGGGGAATTTGG+GGG | + | chr1_3:51241643-51241662 | Msa0123910:intron | 40.0% | |
| CATATTGCCGCTATAACACA+TGG | - | chr1_3:51241767-51241786 | None:intergenic | 40.0% | |
| AAGAAACTCCCAACCCAAAA+TGG | + | chr1_3:51241950-51241969 | Msa0123910:intron | 40.0% | |
| GTAAGGATACAAGAGACTAC+AGG | - | chr1_3:51241998-51242017 | None:intergenic | 40.0% | |
| ! | GGAAACATGTTGCATTGGTA+AGG | - | chr1_3:51242015-51242034 | None:intergenic | 40.0% |
| ! | AAAAGGGCGGAATGGAATTT+TGG | + | chr1_3:51242219-51242238 | Msa0123910:three_prime_UTR | 40.0% |
| ! | AAAGGGCGGAATGGAATTTT+GGG | + | chr1_3:51242220-51242239 | Msa0123910:three_prime_UTR | 40.0% |
| ATCCTGCACAAAATAGGATG+GGG | + | chr1_3:51242459-51242478 | Msa0123910:three_prime_UTR | 40.0% | |
| ACCAATGAAGCAAGCAGCAA+TGG | + | chr1_3:51235713-51235732 | Msa0123910:exon | 45.0% | |
| GTAAGGGAGAAGAACAAGAG+AGG | - | chr1_3:51235752-51235771 | None:intergenic | 45.0% | |
| ! | GCGAGAAAATGGGAAGGTTT+TGG | - | chr1_3:51235799-51235818 | None:intergenic | 45.0% |
| GAGAGAAGGAGCGAGAAAAT+GGG | - | chr1_3:51235809-51235828 | None:intergenic | 45.0% | |
| AGAGAGAAGGAGCGAGAAAA+TGG | - | chr1_3:51235810-51235829 | None:intergenic | 45.0% | |
| GAGAGAAAGAGGAAGAGAGA+AGG | - | chr1_3:51235823-51235842 | None:intergenic | 45.0% | |
| !! | GTTTTGGTGGAGAGAGAAAG+AGG | - | chr1_3:51235834-51235853 | None:intergenic | 45.0% |
| !! | GAGAGAAGTTAGGGTTTTGG+TGG | - | chr1_3:51235847-51235866 | None:intergenic | 45.0% |
| ! | GGAGAGAGAAGTTAGGGTTT+TGG | - | chr1_3:51235850-51235869 | None:intergenic | 45.0% |
| ! | AAGGTCGAAGTCATAGTGGA+TGG | - | chr1_3:51235928-51235947 | None:intergenic | 45.0% |
| AGCAGCGTTAGCACCAAAAT+TGG | - | chr1_3:51236000-51236019 | None:intergenic | 45.0% | |
| TCCGTTCTCCACAATCTCAT+CGG | + | chr1_3:51236031-51236050 | Msa0123910:CDS | 45.0% | |
| TCCGATGAGATTGTGGAGAA+CGG | - | chr1_3:51236035-51236054 | None:intergenic | 45.0% | |
| ACAATCTCATCGGATACCAC+CGG | + | chr1_3:51236041-51236060 | Msa0123910:CDS | 45.0% | |
| GAAACCCTAAGCTATGGAAG+AGG | - | chr1_3:51236089-51236108 | None:intergenic | 45.0% | |
| GGGTCCTATATTTAGAGACG+AGG | - | chr1_3:51236622-51236641 | None:intergenic | 45.0% | |
| ! | AACACTAGACTGGTTGGGTT+TGG | + | chr1_3:51236812-51236831 | Msa0123910:intron | 45.0% |
| ! | ACACTAGACTGGTTGGGTTT+GGG | + | chr1_3:51236813-51236832 | Msa0123910:intron | 45.0% |
| ! | GTATCTAAAACCAGGGAAGC+CGG | + | chr1_3:51237087-51237106 | Msa0123910:intron | 45.0% |
| ATTAACCACGTATTTGGGCG+TGG | - | chr1_3:51237301-51237320 | None:intergenic | 45.0% | |
| TTGTGCAGCTGTGTAATACG+TGG | + | chr1_3:51237478-51237497 | Msa0123910:intron | 45.0% | |
| AGAATCATCCCACCTTTCCA+CGG | - | chr1_3:51237705-51237724 | None:intergenic | 45.0% | |
| GGAAAGGTGGGATGATTCTT+TGG | + | chr1_3:51237706-51237725 | Msa0123910:intron | 45.0% | |
| CCATCAACATCAACTGTGTG+AGG | - | chr1_3:51237832-51237851 | None:intergenic | 45.0% | |
| ! | CCTCACACAGTTGATGTTGA+TGG | + | chr1_3:51237829-51237848 | Msa0123910:CDS | 45.0% |
| CCCTTCATTCCTGATATTCC+TGG | + | chr1_3:51237898-51237917 | Msa0123910:CDS | 45.0% | |
| CCAACAATGGCAATCTTCTC+AGG | - | chr1_3:51237973-51237992 | None:intergenic | 45.0% | |
| CCTGAGAAGATTGCCATTGT+TGG | + | chr1_3:51237970-51237989 | Msa0123910:CDS | 45.0% | |
| GAGAAGATTGCCATTGTTGG+TGG | + | chr1_3:51237973-51237992 | Msa0123910:CDS | 45.0% | |
| GAAGATTGCCATTGTTGGTG+GGG | + | chr1_3:51237975-51237994 | Msa0123910:CDS | 45.0% | |
| ! | AAGATTGCCATTGTTGGTGG+GGG | + | chr1_3:51237976-51237995 | Msa0123910:CDS | 45.0% |
| AATGTAACCCCCACCAACAA+TGG | - | chr1_3:51237986-51238005 | None:intergenic | 45.0% | |
| TACATTGCCTTGGAGTTTGC+TGG | + | chr1_3:51238000-51238019 | Msa0123910:CDS | 45.0% | |
| GATGAAGAGGTAAGCAAGCA+TGG | + | chr1_3:51238090-51238109 | Msa0123910:intron | 45.0% | |
| GTCTCCTGTAGCTATCACTA+AGG | + | chr1_3:51238245-51238264 | Msa0123910:CDS | 45.0% | |
| ! | TGAGCCAACTAAGAAGCATG+TGG | - | chr1_3:51238835-51238854 | None:intergenic | 45.0% |
| TCAAGAACATGCAAGCCGTA+TGG | - | chr1_3:51238862-51238881 | None:intergenic | 45.0% | |
| ! | AGTGTTACTCCTATTCACCC+AGG | + | chr1_3:51239101-51239120 | Msa0123910:intron | 45.0% |
| TCTCCGATTGCCCAAATTGA+AGG | - | chr1_3:51239153-51239172 | None:intergenic | 45.0% | |
| CAATCGGAGATGCTACAAAC+AGG | + | chr1_3:51239163-51239182 | Msa0123910:CDS | 45.0% | |
| ! | TCTCACTCCAGTTGCTTTGA+TGG | + | chr1_3:51239191-51239210 | Msa0123910:CDS | 45.0% |
| ! | ACTCCAGTTGCTTTGATGGA+GGG | + | chr1_3:51239195-51239214 | Msa0123910:CDS | 45.0% |
| ! | AACTCCTCCAATTGGTGGTT+GGG | - | chr1_3:51240003-51240022 | None:intergenic | 45.0% |
| GCACAGGCTGTAGAACAATA+TGG | + | chr1_3:51240140-51240159 | Msa0123910:intron | 45.0% | |
| TTCTGGGTTTGCACATGTGT+GGG | + | chr1_3:51240270-51240289 | Msa0123910:CDS | 45.0% | |
| TGATGCTCCTGAAATTGTGC+AGG | + | chr1_3:51240295-51240314 | Msa0123910:CDS | 45.0% | |
| GCAGACTTTGATGCTACTGT+AGG | + | chr1_3:51240439-51240458 | Msa0123910:CDS | 45.0% | |
| GCTCTTTCGAATCTTCCTAG+TGG | - | chr1_3:51240509-51240528 | None:intergenic | 45.0% | |
| TCGAAAGAGCCTTGATTCAC+AGG | + | chr1_3:51240519-51240538 | Msa0123910:CDS | 45.0% | |
| AAGTAATCATGGCCTGCACA+GGG | - | chr1_3:51240733-51240752 | None:intergenic | 45.0% | |
| TGTGCAGGCCATGATTACTT+GGG | + | chr1_3:51240733-51240752 | Msa0123910:intron | 45.0% | |
| TAGACTTCTTCGTGAGGGAA+GGG | - | chr1_3:51240791-51240810 | None:intergenic | 45.0% | |
| ! | CATCCTTACCTCAAAGGCAT+CGG | - | chr1_3:51241121-51241140 | None:intergenic | 45.0% |
| TAGGTTTAGGTGCTCTCTCT+TGG | + | chr1_3:51241240-51241259 | Msa0123910:intron | 45.0% | |
| TAGGAAAAGGGGAATTTGGG+GGG | + | chr1_3:51241644-51241663 | Msa0123910:intron | 45.0% | |
| GGAATTTGGGGGGTAGATTA+CGG | + | chr1_3:51241654-51241673 | Msa0123910:intron | 45.0% | |
| GAATTTGGGGGGTAGATTAC+GGG | + | chr1_3:51241655-51241674 | Msa0123910:intron | 45.0% | |
| GTAGATTACGGGTAACTGAG+AGG | + | chr1_3:51241666-51241685 | Msa0123910:intron | 45.0% | |
| !!! | CATTCCTGCCATTTTGGGTT+GGG | - | chr1_3:51241961-51241980 | None:intergenic | 45.0% |
| !!! | ACATTCCTGCCATTTTGGGT+TGG | - | chr1_3:51241962-51241981 | None:intergenic | 45.0% |
| TGTCTTGAAAGCTCAGTTGC+CGG | - | chr1_3:51242169-51242188 | None:intergenic | 45.0% | |
| GGGGTGAGCTCATTTGAAAA+GGG | + | chr1_3:51242203-51242222 | Msa0123910:three_prime_UTR | 45.0% | |
| GTGAGCTCATTTGAAAAGGG+CGG | + | chr1_3:51242206-51242225 | Msa0123910:three_prime_UTR | 45.0% | |
| CTCATTTGAAAAGGGCGGAA+TGG | + | chr1_3:51242211-51242230 | Msa0123910:three_prime_UTR | 45.0% | |
| ! | TACCCCATCCTATTTTGTGC+AGG | - | chr1_3:51242464-51242483 | None:intergenic | 45.0% |
| !! | ATAGTTTAAAAAAAAAAAAA+TGG | - | chr1_3:51239576-51239595 | None:intergenic | 5.0% |
| !! | AGAAAAAAAATTAAAAAAAA+TGG | - | chr1_3:51241366-51241385 | None:intergenic | 5.0% |
| !!! | TTTAATTTTATATCATTTTT+TGG | - | chr1_3:51241800-51241819 | None:intergenic | 5.0% |
| ! | GCCATTGCTGCTTGCTTCAT+TGG | - | chr1_3:51235717-51235736 | None:intergenic | 50.0% |
| GAAGGAGCGAGAAAATGGGA+AGG | - | chr1_3:51235805-51235824 | None:intergenic | 50.0% | |
| !! | TCGAAGTCATAGTGGATGGC+GGG | - | chr1_3:51235924-51235943 | None:intergenic | 50.0% |
| !! | GTCGAAGTCATAGTGGATGG+CGG | - | chr1_3:51235925-51235944 | None:intergenic | 50.0% |
| !! | TACCAGCGCCGATGGTAAAA+AGG | - | chr1_3:51235947-51235966 | None:intergenic | 50.0% |
| GGTGGTATCCGATGAGATTG+TGG | - | chr1_3:51236042-51236061 | None:intergenic | 50.0% | |
| ! | CACTAGACTGGTTGGGTTTG+GGG | + | chr1_3:51236814-51236833 | Msa0123910:intron | 50.0% |
| ! | AGGAGTGGGTTTACTGAGTC+AGG | + | chr1_3:51237001-51237020 | Msa0123910:intron | 50.0% |
| GAAGCCGGTTATCCCGTATT+TGG | + | chr1_3:51237102-51237121 | Msa0123910:intron | 50.0% | |
| GTTAACCACGCCCAAATACG+TGG | + | chr1_3:51237293-51237312 | Msa0123910:intron | 50.0% | |
| !! | GTCAAGTTGATTGAAGGCCG+TGG | + | chr1_3:51237685-51237704 | Msa0123910:CDS | 50.0% |
| GTTGATTGAAGGCCGTGGAA+AGG | + | chr1_3:51237690-51237709 | Msa0123910:CDS | 50.0% | |
| ATTGAAGGCCGTGGAAAGGT+GGG | + | chr1_3:51237694-51237713 | Msa0123910:intron | 50.0% | |
| ! | CGACAAAAGCAGGTTTTGCG+AGG | + | chr1_3:51238063-51238082 | Msa0123910:CDS | 50.0% |
| CTACAGGAGACTCCTCAGTA+TGG | - | chr1_3:51238236-51238255 | None:intergenic | 50.0% | |
| GCTGCCTTAGTGATAGCTAC+AGG | - | chr1_3:51238252-51238271 | None:intergenic | 50.0% | |
| GCTATCACTAAGGCAGCTGA+TGG | + | chr1_3:51238255-51238274 | Msa0123910:CDS | 50.0% | |
| !! | AAAGACCAGCAAAGGTACCG+TGG | + | chr1_3:51238290-51238309 | Msa0123910:CDS | 50.0% |
| ACTCCAGTGTCCTTAAGGGT+TGG | + | chr1_3:51238797-51238816 | Msa0123910:intron | 50.0% | |
| TAGCCAACCCTTAAGGACAC+TGG | - | chr1_3:51238803-51238822 | None:intergenic | 50.0% | |
| ! | CACTCCAGTTGCTTTGATGG+AGG | + | chr1_3:51239194-51239213 | Msa0123910:CDS | 50.0% |
| ACTCCCTCCATCAAAGCAAC+TGG | - | chr1_3:51239201-51239220 | None:intergenic | 50.0% | |
| ! | AGTTGCTTTGATGGAGGGAG+TGG | + | chr1_3:51239200-51239219 | Msa0123910:CDS | 50.0% |
| TGACTTCAGTGACCAGTGTG+TGG | + | chr1_3:51239319-51239338 | Msa0123910:intron | 50.0% | |
| !! | TGTGTGATCAAGCTTGCTGC+CGG | + | chr1_3:51239754-51239773 | Msa0123910:intron | 50.0% |
| GCAGCAACTACAACAACCAC+CGG | - | chr1_3:51239776-51239795 | None:intergenic | 50.0% | |
| GTGTTCTCCCAACCACCAAT+TGG | + | chr1_3:51239993-51240012 | Msa0123910:CDS | 50.0% | |
| TTCTCCCAACCACCAATTGG+AGG | + | chr1_3:51239996-51240015 | Msa0123910:CDS | 50.0% | |
| ! | CAACTCCTCCAATTGGTGGT+TGG | - | chr1_3:51240004-51240023 | None:intergenic | 50.0% |
| CAACCACCAATTGGAGGAGT+TGG | + | chr1_3:51240002-51240021 | Msa0123910:CDS | 50.0% | |
| AGACCAACTCCTCCAATTGG+TGG | - | chr1_3:51240008-51240027 | None:intergenic | 50.0% | |
| GTGAGACCAACTCCTCCAAT+TGG | - | chr1_3:51240011-51240030 | None:intergenic | 50.0% | |
| ! | CGATGGATTTAGCCTGCCAT+GGG | - | chr1_3:51240052-51240071 | None:intergenic | 50.0% |
| ! | TCGATGGATTTAGCCTGCCA+TGG | - | chr1_3:51240053-51240072 | None:intergenic | 50.0% |
| ! | GTTCTGGGTTTGCACATGTG+TGG | + | chr1_3:51240269-51240288 | Msa0123910:CDS | 50.0% |
| TCTGGGTTTGCACATGTGTG+GGG | + | chr1_3:51240271-51240290 | Msa0123910:CDS | 50.0% | |
| CTGAGGAGTTTGTCACCATG+AGG | + | chr1_3:51240479-51240498 | Msa0123910:CDS | 50.0% | |
| CAAGTAATCATGGCCTGCAC+AGG | - | chr1_3:51240734-51240753 | None:intergenic | 50.0% | |
| CTGTGCAGGCCATGATTACT+TGG | + | chr1_3:51240732-51240751 | Msa0123910:intron | 50.0% | |
| AGACTTCTTCGTGAGGGAAG+GGG | - | chr1_3:51240790-51240809 | None:intergenic | 50.0% | |
| CTAGACTTCTTCGTGAGGGA+AGG | - | chr1_3:51240792-51240811 | None:intergenic | 50.0% | |
| !! | AAGGCATCGGCAAGTTTCTC+TGG | - | chr1_3:51241108-51241127 | None:intergenic | 50.0% |
| GAAACTTGCCGATGCCTTTG+AGG | + | chr1_3:51241110-51241129 | Msa0123910:three_prime_UTR | 50.0% | |
| !! | TTGCCGATGCCTTTGAGGTA+AGG | + | chr1_3:51241115-51241134 | Msa0123910:intron | 50.0% |
| AACTCCCAACCCAAAATGGC+AGG | + | chr1_3:51241954-51241973 | Msa0123910:intron | 50.0% | |
| ACGCCGGAAACATGTTGCAT+TGG | - | chr1_3:51242020-51242039 | None:intergenic | 50.0% | |
| CGGGGTGAGCTCATTTGAAA+AGG | + | chr1_3:51242202-51242221 | Msa0123910:three_prime_UTR | 50.0% | |
| GTTGGAGTTGAGACACAGCA+TGG | + | chr1_3:51242368-51242387 | Msa0123910:three_prime_UTR | 50.0% | |
| GGGAGGGGAGAGAGAAGTTA+GGG | - | chr1_3:51235856-51235875 | None:intergenic | 55.0% | |
| GTCCGCGCTGAATCGCAAAA+CGG | + | chr1_3:51235891-51235910 | Msa0123910:CDS | 55.0% | |
| !! | CGAAGTCATAGTGGATGGCG+GGG | - | chr1_3:51235923-51235942 | None:intergenic | 55.0% |
| ! | GACCTTTTTACCATCGGCGC+TGG | + | chr1_3:51235942-51235961 | Msa0123910:CDS | 55.0% |
| !! | TTTACCATCGGCGCTGGTAG+TGG | + | chr1_3:51235948-51235967 | Msa0123910:CDS | 55.0% |
| TGGAAGCAAAGCGAGAGGCA+CGG | - | chr1_3:51235980-51235999 | None:intergenic | 55.0% | |
| ATCTCATCGGATACCACCGG+AGG | + | chr1_3:51236044-51236063 | Msa0123910:CDS | 55.0% | |
| GCTGAGTTGCAGAGGCTTAC+TGG | + | chr1_3:51237631-51237650 | Msa0123910:CDS | 55.0% | |
| GATTGAAGGCCGTGGAAAGG+TGG | + | chr1_3:51237693-51237712 | Msa0123910:intron | 55.0% | |
| TGGTGGGGGTTACATTGCCT+TGG | + | chr1_3:51237990-51238009 | Msa0123910:CDS | 55.0% | |
| !! | ACCAGCAAAGGTACCGTGGA+TGG | + | chr1_3:51238294-51238313 | Msa0123910:CDS | 55.0% |
| ACCATCCACGGTACCTTTGC+TGG | - | chr1_3:51238298-51238317 | None:intergenic | 55.0% | |
| ! | TGGAGGAGTTGGTCTCACAG+AGG | + | chr1_3:51240013-51240032 | Msa0123910:CDS | 55.0% |
| ! | AGTTGGTCTCACAGAGGAGC+AGG | + | chr1_3:51240019-51240038 | Msa0123910:CDS | 55.0% |
| AGGAGCAGGTGAATGACCCA+TGG | + | chr1_3:51240033-51240052 | Msa0123910:intron | 55.0% | |
| CAAACTCCTCAGCTGCGGTT+GGG | - | chr1_3:51240471-51240490 | None:intergenic | 55.0% | |
| ACAAACTCCTCAGCTGCGGT+TGG | - | chr1_3:51240472-51240491 | None:intergenic | 55.0% | |
| GGTGACAAACTCCTCAGCTG+CGG | - | chr1_3:51240476-51240495 | None:intergenic | 55.0% | |
| TCACCATGAGGACTCCCACT+AGG | + | chr1_3:51240491-51240510 | Msa0123910:CDS | 55.0% | |
| CTTCCTAGTGGGAGTCCTCA+TGG | - | chr1_3:51240497-51240516 | None:intergenic | 55.0% | |
| GACTTCTTCGTGAGGGAAGG+GGG | - | chr1_3:51240789-51240808 | None:intergenic | 55.0% | |
| GGGGAGGGGAGAGAGAAGTT+AGG | - | chr1_3:51235857-51235876 | None:intergenic | 60.0% | |
| !! | CGCCGTTTTGCGATTCAGCG+CGG | - | chr1_3:51235896-51235915 | None:intergenic | 60.0% |
| ! | TCGGATACCACCGGAGGTGT+CGG | + | chr1_3:51236050-51236069 | Msa0123910:CDS | 60.0% |
| TTACGTGCCACCGACACCTC+CGG | - | chr1_3:51236063-51236082 | None:intergenic | 60.0% | |
| ! | TACGGGATAACCGGCTTCCC+TGG | - | chr1_3:51237100-51237119 | None:intergenic | 60.0% |
| !! | GTGATCAAGCTTGCTGCCGG+TGG | + | chr1_3:51239757-51239776 | Msa0123910:intron | 60.0% |
| GGTTGGGAGAACACAGCAGC+AGG | - | chr1_3:51239987-51240006 | None:intergenic | 60.0% | |
| GCAGGTGAATGACCCATGGC+AGG | + | chr1_3:51240037-51240056 | Msa0123910:intron | 60.0% | |
| CACTGAAGGCCACCCTCTCT+GGG | + | chr1_3:51240195-51240214 | Msa0123910:CDS | 60.0% | |
| CATTCACCCAACCGCAGCTG+AGG | + | chr1_3:51240462-51240481 | Msa0123910:CDS | 60.0% | |
| CGATTCAGCGCGGACAGCGA+AGG | - | chr1_3:51235886-51235905 | None:intergenic | 65.0% | |
| !! | ACCATCGGCGCTGGTAGTGG+CGG | + | chr1_3:51235951-51235970 | Msa0123910:CDS | 65.0% |
| !! | GATACCACCGGAGGTGTCGG+TGG | + | chr1_3:51236053-51236072 | Msa0123910:CDS | 65.0% |
| CCAGAGAGGGTGGCCTTCAG+TGG | - | chr1_3:51240197-51240216 | None:intergenic | 65.0% | |
| CCACTGAAGGCCACCCTCTC+TGG | + | chr1_3:51240194-51240213 | Msa0123910:CDS | 65.0% | |
| GTCTGGAAGCCCAGAGAGGG+TGG | - | chr1_3:51240207-51240226 | None:intergenic | 65.0% | |
| CCGGTCTGGAAGCCCAGAGA+GGG | - | chr1_3:51240210-51240229 | None:intergenic | 65.0% | |
| CCCTCTCTGGGCTTCCAGAC+CGG | + | chr1_3:51240207-51240226 | Msa0123910:CDS | 65.0% | |
| CCTCTCTGGGCTTCCAGACC+GGG | + | chr1_3:51240208-51240227 | Msa0123910:CDS | 65.0% | |
| TGAGGGAAGGGGGTGACAGC+AGG | - | chr1_3:51240779-51240798 | None:intergenic | 65.0% | |
| CAGCGCGGACAGCGAAGGTG+CGG | - | chr1_3:51235881-51235900 | None:intergenic | 70.0% | |
| ! | ACCGCCACTACCAGCGCCGA+TGG | - | chr1_3:51235955-51235974 | None:intergenic | 70.0% |
| CCCGGTCTGGAAGCCCAGAG+AGG | - | chr1_3:51240211-51240230 | None:intergenic | 70.0% | |
| ! | AGCGAAGGTGCGGCGGGGAG+GGG | - | chr1_3:51235871-51235890 | None:intergenic | 75.0% |
| ! | CAGCGAAGGTGCGGCGGGGA+GGG | - | chr1_3:51235872-51235891 | None:intergenic | 75.0% |
| ! | ACAGCGAAGGTGCGGCGGGG+AGG | - | chr1_3:51235873-51235892 | None:intergenic | 75.0% |
| ! | CGGACAGCGAAGGTGCGGCG+GGG | - | chr1_3:51235876-51235895 | None:intergenic | 75.0% |
| ! | GCGGACAGCGAAGGTGCGGC+GGG | - | chr1_3:51235877-51235896 | None:intergenic | 75.0% |
| ! | CGCGGACAGCGAAGGTGCGG+CGG | - | chr1_3:51235878-51235897 | None:intergenic | 75.0% |
| CGTGCCACCGACACCTCCGG+TGG | - | chr1_3:51236060-51236079 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 51235622 | 51242511 | 51235622 | ID=Msa0123910;Name=Msa0123910 |
| chr1_3 | mRNA | 51235622 | 51242511 | 51235622 | ID=Msa0123910-mRNA-1;Parent=Msa0123910;Name=Msa0123910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=95|1|1|1|0.9|0.90|11|421|553 |
| chr1_3 | exon | 51235622 | 51236078 | 51235622 | ID=Msa0123910-mRNA-1:exon:15657;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51237486 | 51237711 | 51237486 | ID=Msa0123910-mRNA-1:exon:15658;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51237820 | 51238098 | 51237820 | ID=Msa0123910-mRNA-1:exon:15659;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51238186 | 51238362 | 51238186 | ID=Msa0123910-mRNA-1:exon:15660;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51238987 | 51239040 | 51238987 | ID=Msa0123910-mRNA-1:exon:15661;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51239123 | 51239271 | 51239123 | ID=Msa0123910-mRNA-1:exon:15662;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51239977 | 51240040 | 51239977 | ID=Msa0123910-mRNA-1:exon:15663;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51240146 | 51240316 | 51240146 | ID=Msa0123910-mRNA-1:exon:15664;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51240403 | 51240540 | 51240403 | ID=Msa0123910-mRNA-1:exon:15665;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51241036 | 51241131 | 51241036 | ID=Msa0123910-mRNA-1:exon:15666;Parent=Msa0123910-mRNA-1 |
| chr1_3 | exon | 51242145 | 51242511 | 51242145 | ID=Msa0123910-mRNA-1:exon:15667;Parent=Msa0123910-mRNA-1 |
| chr1_3 | five_prime_UTR | 51235622 | 51235716 | 51235622 | ID=Msa0123910-mRNA-1:five_prime_utr;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51235717 | 51236078 | 51235717 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51237486 | 51237711 | 51237486 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51237820 | 51238098 | 51237820 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51238186 | 51238362 | 51238186 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51238987 | 51239040 | 51238987 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51239123 | 51239271 | 51239123 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51239977 | 51240040 | 51239977 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51240146 | 51240316 | 51240146 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51240403 | 51240540 | 51240403 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | CDS | 51241036 | 51241077 | 51241036 | ID=Msa0123910-mRNA-1:cds;Parent=Msa0123910-mRNA-1 |
| chr1_3 | three_prime_UTR | 51241078 | 51241131 | 51241078 | ID=Msa0123910-mRNA-1:three_prime_utr;Parent=Msa0123910-mRNA-1 |
| chr1_3 | three_prime_UTR | 51242145 | 51242511 | 51242145 | ID=Msa0123910-mRNA-1:three_prime_utr;Parent=Msa0123910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
