Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126170 | XP_013468871.1 | 97.566 | 452 | 9 | 1 | 1 | 452 | 1 | 450 | 0.0 | 912 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126170 | sp|Q9SGU9|MGL_ARATH | 74.533 | 428 | 103 | 2 | 19 | 443 | 17 | 441 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126170 | A0A072VNE2 | 97.566 | 452 | 9 | 1 | 1 | 452 | 1 | 450 | 0.0 | 912 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa0126170 | 0.829476 | 5.038996e-55 | -8.615850e-47 |
| Msa0078460 | Msa0126170 | 0.933019 | 3.544443e-95 | -8.615850e-47 |
| Msa0126170 | Msa0171100 | 0.927550 | 1.004790e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126170 | MtrunA17_Chr1g0189071 | 97.566 | 452 | 9 | 1 | 1 | 452 | 1 | 450 | 0.0 | 912 |
| Msa0126170 | MtrunA17_Chr3g0119851 | 77.381 | 420 | 94 | 1 | 26 | 445 | 23 | 441 | 0.0 | 662 |
| Msa0126170 | MtrunA17_Chr6g0453481 | 30.114 | 352 | 227 | 9 | 92 | 437 | 134 | 472 | 7.30e-41 | 152 |
| Msa0126170 | MtrunA17_Chr7g0217761 | 29.042 | 334 | 221 | 8 | 95 | 424 | 196 | 517 | 2.65e-37 | 143 |
| Msa0126170 | MtrunA17_Chr1g0181151 | 27.296 | 392 | 247 | 13 | 42 | 424 | 86 | 448 | 8.68e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126170 | AT1G64660.1 | 74.533 | 428 | 103 | 2 | 19 | 443 | 17 | 441 | 0.0 | 645 |
| Msa0126170 | AT3G01120.1 | 33.731 | 335 | 204 | 8 | 95 | 424 | 224 | 545 | 1.70e-49 | 177 |
| Msa0126170 | AT1G33320.2 | 30.861 | 337 | 214 | 9 | 93 | 424 | 33 | 355 | 1.34e-42 | 154 |
| Msa0126170 | AT1G33320.1 | 30.861 | 337 | 214 | 9 | 93 | 424 | 72 | 394 | 2.31e-42 | 155 |
| Msa0126170 | AT1G33320.3 | 30.435 | 322 | 205 | 9 | 108 | 424 | 3 | 310 | 3.24e-37 | 139 |
| Msa0126170 | AT3G57050.4 | 29.799 | 349 | 225 | 9 | 79 | 424 | 57 | 388 | 2.05e-35 | 136 |
| Msa0126170 | AT3G57050.5 | 29.462 | 353 | 221 | 10 | 79 | 424 | 35 | 366 | 2.58e-35 | 135 |
| Msa0126170 | AT3G57050.1 | 29.745 | 353 | 220 | 10 | 79 | 424 | 113 | 444 | 5.13e-35 | 135 |
| Msa0126170 | AT3G57050.2 | 29.745 | 353 | 220 | 10 | 79 | 424 | 98 | 429 | 5.42e-35 | 135 |
| Msa0126170 | AT3G57050.3 | 32.609 | 276 | 168 | 8 | 79 | 346 | 113 | 378 | 9.63e-34 | 130 |
Find 155 sgRNAs with CRISPR-Local
Find 460 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGTTCAAATGCTATTT+TGG | 0.073928 | 1_3:-55091277 | None:intergenic |
| AAAGTGATTCAATTCTTATT+AGG | 0.168129 | 1_3:-55091753 | None:intergenic |
| TTGCAAAACTATGGACAATT+TGG | 0.197366 | 1_3:+55091525 | Msa0126170:CDS |
| AACATGCGTCGGAGAGTTTC+TGG | 0.220883 | 1_3:-55085154 | None:intergenic |
| CGCTTGGCGGTTGCGGTGGC+GGG | 0.228790 | 1_3:-55084962 | None:intergenic |
| TCGCTTGGCGGTTGCGGTGG+CGG | 0.232225 | 1_3:-55084963 | None:intergenic |
| CCTTAACCTCAGCCGTTTAA+TGG | 0.235761 | 1_3:+55085240 | Msa0126170:CDS |
| CATGATGTGGATGGTCTTCT+AGG | 0.248249 | 1_3:-55091404 | None:intergenic |
| AAGTGATTCAATTCTTATTA+GGG | 0.263216 | 1_3:-55091752 | None:intergenic |
| CTATGGACAATTTGGTTTCA+TGG | 0.269872 | 1_3:+55091533 | Msa0126170:CDS |
| TGGTTTCATGGCTGTTAGTT+TGG | 0.281840 | 1_3:+55091545 | Msa0126170:CDS |
| ATGAGCTATTTGCAAAACTA+TGG | 0.283875 | 1_3:+55091516 | Msa0126170:CDS |
| AGGATGTCAATAGGGTATAT+TGG | 0.287954 | 1_3:+55091666 | Msa0126170:CDS |
| GTATCTAGACTTCAAGAATA+TGG | 0.292860 | 1_3:+55091726 | Msa0126170:CDS |
| ATGGAATTCACTAGGCTTGC+AGG | 0.299058 | 1_3:-55091204 | None:intergenic |
| TTCATCAACCATTTCAATAT+CGG | 0.310566 | 1_3:-55085455 | None:intergenic |
| TGTTGGTCCTAATAGCATTA+TGG | 0.326242 | 1_3:-55091247 | None:intergenic |
| TCTGAGGAAAAGGTTCTTGC+TGG | 0.335620 | 1_3:+55091624 | Msa0126170:CDS |
| GGTTTCATGGCTGTTAGTTT+GGG | 0.336700 | 1_3:+55091546 | Msa0126170:CDS |
| CCATTAAACGGCTGAGGTTA+AGG | 0.338929 | 1_3:-55085240 | None:intergenic |
| GAAACACTTATGTCTTGTTC+TGG | 0.350339 | 1_3:+55091576 | Msa0126170:CDS |
| CAAGGGGCCATAATGCTATT+AGG | 0.360521 | 1_3:+55091240 | Msa0126170:CDS |
| TTGGAGGATTGCGGCGGAAA+TGG | 0.369797 | 1_3:-55085314 | None:intergenic |
| ACCAATCAATTCAAAACAAC+TGG | 0.370297 | 1_3:+55084802 | Msa0126170:five_prime_UTR |
| TGCTGGAATCTCACCAGGTC+TGG | 0.379098 | 1_3:+55091641 | Msa0126170:CDS |
| CGCATGTTCGCCGGAGAGTT+AGG | 0.381110 | 1_3:+55085169 | Msa0126170:CDS |
| CTTGGCGGTTGCGGTGGCGG+GGG | 0.384494 | 1_3:-55084960 | None:intergenic |
| TTGGGACTTTGGAGCAGAAA+TGG | 0.390914 | 1_3:+55091685 | Msa0126170:CDS |
| TCAATTCACAACAAAGACTA+TGG | 0.391666 | 1_3:+55091438 | Msa0126170:CDS |
| GGTGGGGCAGATATCATTGC+AGG | 0.399765 | 1_3:+55085685 | Msa0126170:CDS |
| GGATGTCAATAGGGTATATT+GGG | 0.402478 | 1_3:+55091667 | Msa0126170:CDS |
| TTCGATACGGTTTCGCTTGG+CGG | 0.407277 | 1_3:-55084975 | None:intergenic |
| GCCAGCGCACGACACGAATT+CGG | 0.408975 | 1_3:+55085073 | Msa0126170:CDS |
| CGAATATACCGGAGTTATGT+AGG | 0.411012 | 1_3:+55085545 | Msa0126170:CDS |
| CACAACAAAGACTATGGTTA+TGG | 0.412875 | 1_3:+55091444 | Msa0126170:CDS |
| GCCGAATTCGTGTCGTGCGC+TGG | 0.420373 | 1_3:-55085074 | None:intergenic |
| ACGAATTCGGCGAACACGGC+GGG | 0.421096 | 1_3:+55085086 | Msa0126170:CDS |
| AATAGGGTATATTGGGACTT+TGG | 0.430260 | 1_3:+55091674 | Msa0126170:CDS |
| TGAGATTTCCGATATTGAAA+TGG | 0.430871 | 1_3:+55085447 | Msa0126170:CDS |
| CGCTGGCTAGTGACGTGGCT+GGG | 0.430982 | 1_3:-55085057 | None:intergenic |
| GCTTGGCGGTTGCGGTGGCG+GGG | 0.437853 | 1_3:-55084961 | None:intergenic |
| TGAGTTGAATTCTGAGGAAA+AGG | 0.445451 | 1_3:+55091614 | Msa0126170:CDS |
| CTTCGAGAGCGGCCATTAAA+CGG | 0.448171 | 1_3:-55085252 | None:intergenic |
| ATCAGTCTCAAACCCTACTT+TGG | 0.450586 | 1_3:+55085516 | Msa0126170:CDS |
| GGTCTGGTGAGGATGTCAAT+AGG | 0.456326 | 1_3:+55091657 | Msa0126170:CDS |
| TTAAATAAAACTTGATCAGA+TGG | 0.461003 | 1_3:+55091903 | Msa0126170:three_prime_UTR |
| GCGCTGGCTAGTGACGTGGC+TGG | 0.470280 | 1_3:-55085058 | None:intergenic |
| GTCTTCGATACGGTTTCGCT+TGG | 0.476584 | 1_3:-55084978 | None:intergenic |
| TACTATGTATCTAGCAAGAA+AGG | 0.478330 | 1_3:-55084826 | None:intergenic |
| TGCTATGTTCTTTCATCCGT+AGG | 0.480893 | 1_3:-55091320 | None:intergenic |
| TGAAGCTACCACGTGTTCTC+CGG | 0.481599 | 1_3:-55085347 | None:intergenic |
| GTCTGGTGAGGATGTCAATA+GGG | 0.486751 | 1_3:+55091658 | Msa0126170:CDS |
| ACGGTTTCGCTTGGCGGTTG+CGG | 0.488763 | 1_3:-55084969 | None:intergenic |
| GAAAGGAGTGACGGTGGTGG+TGG | 0.489183 | 1_3:+55085579 | Msa0126170:CDS |
| ATATTCGCCACCGCCAAAGT+AGG | 0.490127 | 1_3:-55085529 | None:intergenic |
| CTAATAGCATTATGGCCCCT+TGG | 0.496849 | 1_3:-55091239 | None:intergenic |
| ATCCTCCAACTCACCTCCAC+CGG | 0.506127 | 1_3:+55085328 | Msa0126170:CDS |
| TGTGGATGGTCTTCTAGGCC+AGG | 0.509408 | 1_3:-55091399 | None:intergenic |
| TTTGGCGGTGGCGAATATAC+CGG | 0.512609 | 1_3:+55085534 | Msa0126170:CDS |
| TGTAGGAGAAGGGAGTTAAG+TGG | 0.514485 | 1_3:-55084895 | None:intergenic |
| GTGATTTCGCCGGTGAAGCT+TGG | 0.515648 | 1_3:+55085622 | Msa0126170:CDS |
| TATTATCGAAGGGAAAACTA+AGG | 0.516287 | 1_3:+55085480 | Msa0126170:CDS |
| GAAATGGAATCAGCTTGAAA+AGG | 0.516409 | 1_3:+55091701 | Msa0126170:CDS |
| GTTCTCCGGTGGAGGTGAGT+TGG | 0.527093 | 1_3:-55085333 | None:intergenic |
| CGACACGAATTCGGCGAACA+CGG | 0.527483 | 1_3:+55085082 | Msa0126170:CDS |
| TTTCGGTTTCGTCTTCGATA+CGG | 0.530283 | 1_3:-55084988 | None:intergenic |
| CTCCGGTGGAGGTGAGTTGG+AGG | 0.531396 | 1_3:-55085330 | None:intergenic |
| CGGCTGAGGTTAAGGACGGT+AGG | 0.531610 | 1_3:-55085232 | None:intergenic |
| CTAGCAACCGCTACACAAAA+CGG | 0.531965 | 1_3:+55085022 | Msa0126170:CDS |
| GGAAATGGCGGACATGCCGC+TGG | 0.533437 | 1_3:-55085299 | None:intergenic |
| CTCAGTAACATTTACCGTCA+TGG | 0.538672 | 1_3:+55085129 | Msa0126170:CDS |
| ATAGCATTATGGCCCCTTGG+TGG | 0.543434 | 1_3:-55091236 | None:intergenic |
| ACATCAGCACCAAGCTTCAC+CGG | 0.543561 | 1_3:-55085631 | None:intergenic |
| CGTTTAATGGCCGCTCTCGA+AGG | 0.544801 | 1_3:+55085253 | Msa0126170:CDS |
| TAATTAACAGGAGCAGTATG+TGG | 0.546525 | 1_3:+55091180 | Msa0126170:intron |
| CATGGGTTTAGTGTAGGAGA+AGG | 0.546709 | 1_3:-55084906 | None:intergenic |
| GGACGGTAGGGTTGAAGTGA+CGG | 0.548416 | 1_3:-55085219 | None:intergenic |
| CTCAAACCCTACTTTGGCGG+TGG | 0.548650 | 1_3:+55085522 | Msa0126170:CDS |
| GTGGATGGTCTTCTAGGCCA+GGG | 0.553045 | 1_3:-55091398 | None:intergenic |
| TATTCGCCACCGCCAAAGTA+GGG | 0.554993 | 1_3:-55085528 | None:intergenic |
| GATTTCAACAATTCATGATG+TGG | 0.554996 | 1_3:-55091417 | None:intergenic |
| TACTCCGATGGTGATTTCGC+CGG | 0.555011 | 1_3:+55085612 | Msa0126170:CDS |
| GGCTGAGGTTAAGGACGGTA+GGG | 0.556203 | 1_3:-55085231 | None:intergenic |
| AGTCTCAAACCCTACTTTGG+CGG | 0.558714 | 1_3:+55085519 | Msa0126170:CDS |
| GTTGATGAAGCTATTATCGA+AGG | 0.560149 | 1_3:+55085469 | Msa0126170:CDS |
| ATCTCGAAGTACATCAGTGG+TGG | 0.562122 | 1_3:+55085667 | Msa0126170:CDS |
| TCAACAATTCATGATGTGGA+TGG | 0.562975 | 1_3:-55091413 | None:intergenic |
| GTTTCGCTTGGCGGTTGCGG+TGG | 0.564473 | 1_3:-55084966 | None:intergenic |
| GGAGGTGAGTTGGAGGATTG+CGG | 0.565483 | 1_3:-55085323 | None:intergenic |
| ACTCTCCGACGCATGTTCGC+CGG | 0.566934 | 1_3:+55085160 | Msa0126170:CDS |
| GCCGCTTACTGCACATCCAG+CGG | 0.567953 | 1_3:+55085283 | Msa0126170:CDS |
| GTTCTTGCTGGAATCTCACC+AGG | 0.569125 | 1_3:+55091636 | Msa0126170:CDS |
| TGACGTGGCTGGGTCGAAGA+CGG | 0.571430 | 1_3:-55085047 | None:intergenic |
| GCCGCTGGATGTGCAGTAAG+CGG | 0.571507 | 1_3:-55085284 | None:intergenic |
| CCCTTGGTGGAGATCCATCA+TGG | 0.571861 | 1_3:-55091223 | None:intergenic |
| TCTCGAAGTACATCAGTGGT+GGG | 0.573052 | 1_3:+55085668 | Msa0126170:CDS |
| TAGACGAAGAAATCACGGTC+TGG | 0.573430 | 1_3:-55085193 | None:intergenic |
| TGGACTTCTTTGCATTGACA+TGG | 0.579725 | 1_3:+55091467 | Msa0126170:CDS |
| CCATGATGGATCTCCACCAA+GGG | 0.581063 | 1_3:+55091223 | Msa0126170:CDS |
| TACCACGTGTTCTCCGGTGG+AGG | 0.582415 | 1_3:-55085341 | None:intergenic |
| GAATATACCGGAGTTATGTA+GGG | 0.582685 | 1_3:+55085546 | Msa0126170:CDS |
| AACAAAGACTATGGTTATGG+TGG | 0.583091 | 1_3:+55091447 | Msa0126170:CDS |
| ATTGACATCCTCACCAGACC+TGG | 0.587888 | 1_3:-55091654 | None:intergenic |
| TCGGAAAGGAGTGACGGTGG+TGG | 0.589708 | 1_3:+55085576 | Msa0126170:CDS |
| TGTAGGGTGGCGCATCGGAA+AGG | 0.590306 | 1_3:+55085562 | Msa0126170:CDS |
| TCAGAAAGAATCCCTCACTT+AGG | 0.590587 | 1_3:+55091297 | Msa0126170:CDS |
| GAATCCCTCACTTAGGCCTA+CGG | 0.591699 | 1_3:+55091304 | Msa0126170:CDS |
| GTCAGCCATGGGTTTAGTGT+AGG | 0.592573 | 1_3:-55084912 | None:intergenic |
| CATAAGGAAAGTGTCAGCCA+TGG | 0.596216 | 1_3:-55084924 | None:intergenic |
| GAGCGGCCATTAAACGGCTG+AGG | 0.596268 | 1_3:-55085246 | None:intergenic |
| GAATCTCACCAGGTCTGGTG+AGG | 0.597692 | 1_3:+55091646 | Msa0126170:CDS |
| GGATTCAAGGTAATCTACCC+TGG | 0.598316 | 1_3:+55091381 | Msa0126170:CDS |
| AGCTACCACGTGTTCTCCGG+TGG | 0.598359 | 1_3:-55085344 | None:intergenic |
| GAGGATTGCGGCGGAAATGG+CGG | 0.601765 | 1_3:-55085311 | None:intergenic |
| ATAAGGAAAGTGTCAGCCAT+GGG | 0.602885 | 1_3:-55084923 | None:intergenic |
| GGCGCATCGGAAAGGAGTGA+CGG | 0.603987 | 1_3:+55085570 | Msa0126170:CDS |
| GTTGTTATGTTGCATGTACG+TGG | 0.609929 | 1_3:-55085415 | None:intergenic |
| CGAATTCGGCGAACACGGCG+GGG | 0.610524 | 1_3:+55085087 | Msa0126170:CDS |
| TCGTGCGCTGGCTAGTGACG+TGG | 0.610640 | 1_3:-55085062 | None:intergenic |
| TGTGATGTGAAGGACATTGA+AGG | 0.611200 | 1_3:+55091863 | Msa0126170:three_prime_UTR |
| TTATGTTGTGTGTGATGTGA+AGG | 0.611475 | 1_3:+55091853 | Msa0126170:three_prime_UTR |
| ATGGGTTTAGTGTAGGAGAA+GGG | 0.614267 | 1_3:-55084905 | None:intergenic |
| TCCATGATGGATCTCCACCA+AGG | 0.615639 | 1_3:+55091222 | Msa0126170:CDS |
| GATCCATCATGGAATTCACT+AGG | 0.617884 | 1_3:-55091212 | None:intergenic |
| GTAGCTTCAAGAACACTCTA+CGG | 0.618404 | 1_3:+55085361 | Msa0126170:CDS |
| GAGAGTTTCTGGTTCCATGA+CGG | 0.618741 | 1_3:-55085143 | None:intergenic |
| CACCTCCACCGGAGAACACG+TGG | 0.620711 | 1_3:+55085339 | Msa0126170:CDS |
| TTCATCCGTAGGCCTAAGTG+AGG | 0.623607 | 1_3:-55091309 | None:intergenic |
| CTTCTCCTACACTAAACCCA+TGG | 0.629375 | 1_3:+55084907 | Msa0126170:exon |
| AGTTATGTAGGGTGGCGCAT+CGG | 0.629436 | 1_3:+55085557 | Msa0126170:CDS |
| ATCGGAAATCTCAACGAACG+TGG | 0.632380 | 1_3:-55085437 | None:intergenic |
| CTCGAAGTACATCAGTGGTG+GGG | 0.633280 | 1_3:+55085669 | Msa0126170:CDS |
| ACTCTCCGGCGAACATGCGT+CGG | 0.635084 | 1_3:-55085165 | None:intergenic |
| GGCTGTAGACGAAGAAATCA+CGG | 0.636097 | 1_3:-55085198 | None:intergenic |
| ACGGTCTGGACCTAACTCTC+CGG | 0.637564 | 1_3:-55085179 | None:intergenic |
| AATTAACAGGAGCAGTATGT+GGG | 0.640948 | 1_3:+55091181 | Msa0126170:intron |
| TTGATGAAGCTATTATCGAA+GGG | 0.644569 | 1_3:+55085470 | Msa0126170:CDS |
| CATGACGGTAAATGTTACTG+AGG | 0.646038 | 1_3:-55085128 | None:intergenic |
| TAGTAGTGAGTTGAATTCTG+AGG | 0.646330 | 1_3:+55091608 | Msa0126170:CDS |
| ATGACGGTAAATGTTACTGA+GGG | 0.647745 | 1_3:-55085127 | None:intergenic |
| CACGAATTCGGCGAACACGG+CGG | 0.647787 | 1_3:+55085085 | Msa0126170:CDS |
| TTGTTGCAAACACTAATGCA+CGG | 0.650041 | 1_3:-55091344 | None:intergenic |
| GGCTTCTGTACCTTCGAGAG+CGG | 0.650176 | 1_3:-55085263 | None:intergenic |
| AAGCCTAGTGAATTCCATGA+TGG | 0.650789 | 1_3:+55091209 | Msa0126170:CDS |
| TGCGCCACCCTACATAACTC+CGG | 0.657885 | 1_3:-55085553 | None:intergenic |
| TAAACGGCTGAGGTTAAGGA+CGG | 0.667746 | 1_3:-55085236 | None:intergenic |
| TTCACCGGCGAAATCACCAT+CGG | 0.669207 | 1_3:-55085616 | None:intergenic |
| TCATCCGTAGGCCTAAGTGA+GGG | 0.670645 | 1_3:-55091308 | None:intergenic |
| TGGTGATTAGTATCACAAAG+TGG | 0.671303 | 1_3:-55084875 | None:intergenic |
| AGTATCTCGAAGTACATCAG+TGG | 0.684643 | 1_3:+55085664 | Msa0126170:CDS |
| TATACCGGAGTTATGTAGGG+TGG | 0.687231 | 1_3:+55085549 | Msa0126170:CDS |
| GCTTCAAGAACACTCTACGG+TGG | 0.691366 | 1_3:+55085364 | Msa0126170:CDS |
| GGTGAGTTGGAGGATTGCGG+CGG | 0.695048 | 1_3:-55085320 | None:intergenic |
| GCATCGGAAAGGAGTGACGG+TGG | 0.704639 | 1_3:+55085573 | Msa0126170:CDS |
| CATGATGGATCTCCACCAAG+GGG | 0.712867 | 1_3:+55091224 | Msa0126170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATGTGATTTTAATTA+AGG | + | chr1_3:55086544-55086563 | Msa0126170:intron | 10.0% |
| !!! | TTTAAAATATTTATAATTCG+AGG | - | chr1_3:55087012-55087031 | None:intergenic | 10.0% |
| !!! | CATTTTAAAACAATTTTTTT+TGG | - | chr1_3:55088137-55088156 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | - | chr1_3:55088240-55088259 | None:intergenic | 10.0% |
| !!! | TGAAGATTAAAAATTTTATA+GGG | - | chr1_3:55089293-55089312 | None:intergenic | 10.0% |
| !!! | TAAAAAATTCTGAATTTTTT+TGG | - | chr1_3:55089410-55089429 | None:intergenic | 10.0% |
| !! | TAACAAAAAAAATAAAAAAC+AGG | - | chr1_3:55090309-55090328 | None:intergenic | 10.0% |
| !!! | ACTATTTTTTTAAACTCATT+AGG | + | chr1_3:55086000-55086019 | Msa0126170:intron | 15.0% |
| !!! | TTTGTCAACATATTTTTAAA+TGG | + | chr1_3:55086100-55086119 | Msa0126170:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTTGTTTG+AGG | + | chr1_3:55086152-55086171 | Msa0126170:intron | 15.0% |
| !!! | AAAATTTGTTATGAGAAAAT+TGG | - | chr1_3:55086352-55086371 | None:intergenic | 15.0% |
| !! | ATAGAATATTGTTAAGATAT+AGG | - | chr1_3:55087104-55087123 | None:intergenic | 15.0% |
| !!! | AGTAATTTGTTTAATACATA+AGG | - | chr1_3:55087136-55087155 | None:intergenic | 15.0% |
| !!! | AAGTTTTAAACTAAAAACAA+AGG | + | chr1_3:55087334-55087353 | Msa0126170:intron | 15.0% |
| !!! | TGTATATTTTAAAAGAAATG+AGG | + | chr1_3:55087933-55087952 | Msa0126170:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_3:55088264-55088283 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_3:55088263-55088282 | Msa0126170:intron | 15.0% |
| !!! | AATATTACACAATTTTTCAA+AGG | + | chr1_3:55088651-55088670 | Msa0126170:intron | 15.0% |
| !! | AATTATATCTTGTAAAAGAA+AGG | + | chr1_3:55089189-55089208 | Msa0126170:intron | 15.0% |
| !! | ATTATATCTTGTAAAAGAAA+GGG | + | chr1_3:55089190-55089209 | Msa0126170:intron | 15.0% |
| !!! | GTGAAGATTAAAAATTTTAT+AGG | - | chr1_3:55089294-55089313 | None:intergenic | 15.0% |
| !!! | AAATTTTTAATCTTCACTTT+TGG | + | chr1_3:55089297-55089316 | Msa0126170:intron | 15.0% |
| !!! | TATGAATTTACTTTAAAAGA+GGG | - | chr1_3:55089324-55089343 | None:intergenic | 15.0% |
| !!! | ATATGAATTTACTTTAAAAG+AGG | - | chr1_3:55089325-55089344 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr1_3:55089594-55089613 | Msa0126170:intron | 15.0% |
| !! | AATAGAAAATTAAGATAAGT+TGG | - | chr1_3:55090589-55090608 | None:intergenic | 15.0% |
| !! | AAATTAAGCTATAATCTTAT+TGG | + | chr1_3:55090832-55090851 | Msa0126170:intron | 15.0% |
| !! | CAAATTTAACTATCAAAACA+TGG | + | chr1_3:55086303-55086322 | Msa0126170:intron | 20.0% |
| !!! | GTGTCATATTTTTATTAGTT+GGG | - | chr1_3:55086509-55086528 | None:intergenic | 20.0% |
| !!! | TGTGTCATATTTTTATTAGT+TGG | - | chr1_3:55086510-55086529 | None:intergenic | 20.0% |
| !!! | TGTGATTTTAATTAAGGAAA+TGG | + | chr1_3:55086550-55086569 | Msa0126170:intron | 20.0% |
| !!! | ATGAGATGTTTGATTTTAAT+TGG | + | chr1_3:55086685-55086704 | Msa0126170:intron | 20.0% |
| !! | TCCAATGAAAAATTATTGAT+TGG | + | chr1_3:55086771-55086790 | Msa0126170:intron | 20.0% |
| !!! | ACCAATCAATAATTTTTCAT+TGG | - | chr1_3:55086775-55086794 | None:intergenic | 20.0% |
| !!! | ACTTGATAATTTAATTGAGT+TGG | - | chr1_3:55087042-55087061 | None:intergenic | 20.0% |
| !! | TCTTCATAACATATATATAG+TGG | - | chr1_3:55087460-55087479 | None:intergenic | 20.0% |
| !! | AACTTGTATATTATGCAAAA+AGG | + | chr1_3:55087574-55087593 | Msa0126170:intron | 20.0% |
| !! | AATGATGTTAATTTATTAGG+AGG | - | chr1_3:55088048-55088067 | None:intergenic | 20.0% |
| !! | CACAATGATGTTAATTTATT+AGG | - | chr1_3:55088051-55088070 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_3:55088177-55088196 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_3:55088254-55088273 | Msa0126170:intron | 20.0% |
| !! | TAGTATGATATGATATACAA+GGG | - | chr1_3:55088478-55088497 | None:intergenic | 20.0% |
| !! | ATAGTATGATATGATATACA+AGG | - | chr1_3:55088479-55088498 | None:intergenic | 20.0% |
| !! | AATGTGAAGAAAAAAACAAA+GGG | - | chr1_3:55088862-55088881 | None:intergenic | 20.0% |
| !! | AAATGTGAAGAAAAAAACAA+AGG | - | chr1_3:55088863-55088882 | None:intergenic | 20.0% |
| !! | TTTATTACACATACAAACAA+AGG | - | chr1_3:55088948-55088967 | None:intergenic | 20.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr1_3:55089072-55089091 | Msa0126170:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr1_3:55089654-55089673 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr1_3:55089590-55089609 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr1_3:55089593-55089612 | Msa0126170:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+AGG | + | chr1_3:55089654-55089673 | Msa0126170:intron | 20.0% |
| !!! | AAATTCGGATAGTTTTTTTT+AGG | - | chr1_3:55089697-55089716 | None:intergenic | 20.0% |
| !!! | ACTTTATGAATTTGATGATT+AGG | + | chr1_3:55089831-55089850 | Msa0126170:intron | 20.0% |
| !!! | CATCCTTTATTATTTCTATT+CGG | - | chr1_3:55090030-55090049 | None:intergenic | 20.0% |
| !!! | ATAATAAAGGATGTTACTTT+AGG | + | chr1_3:55090037-55090056 | Msa0126170:intron | 20.0% |
| !!! | TAATAAAGGATGTTACTTTA+GGG | + | chr1_3:55090038-55090057 | Msa0126170:intron | 20.0% |
| !!! | TTGTTTTTAACTACAACTTA+TGG | + | chr1_3:55090880-55090899 | Msa0126170:intron | 20.0% |
| !!! | GGTTTAAATTGATAATTAAC+AGG | + | chr1_3:55091168-55091187 | Msa0126170:intron | 20.0% |
| !! | ACTAAAAAAATTAGGATTCA+AGG | + | chr1_3:55091368-55091387 | Msa0126170:CDS | 20.0% |
| !! | AAGTGATTCAATTCTTATTA+GGG | - | chr1_3:55091755-55091774 | None:intergenic | 20.0% |
| !! | AAAGTGATTCAATTCTTATT+AGG | - | chr1_3:55091756-55091775 | None:intergenic | 20.0% |
| !!! | TTGAATCACTTTTTAAATCA+TGG | + | chr1_3:55091764-55091783 | Msa0126170:exon | 20.0% |
| !!! | TGAATCACTTTTTAAATCAT+GGG | + | chr1_3:55091765-55091784 | Msa0126170:exon | 20.0% |
| !!! | GATCAAGTTTTATTTAAACA+AGG | - | chr1_3:55091900-55091919 | None:intergenic | 20.0% |
| !! | TTAAATAAAACTTGATCAGA+TGG | + | chr1_3:55091903-55091922 | Msa0126170:three_prime_UTR | 20.0% |
| !!! | TGCTAGTTTCTTTTTTGTTT+CGG | - | chr1_3:55085008-55085027 | None:intergenic | 25.0% |
| ! | TTCATCAACCATTTCAATAT+CGG | - | chr1_3:55085458-55085477 | None:intergenic | 25.0% |
| ! | CAAATTTAACTATCCAAACA+TGG | + | chr1_3:55086248-55086267 | Msa0126170:intron | 25.0% |
| ! | TTGGTATTCGTCAAATAAAA+AGG | - | chr1_3:55086401-55086420 | None:intergenic | 25.0% |
| ! | AGTTTGTGCAATGAAAAAAT+TGG | + | chr1_3:55086382-55086401 | Msa0126170:intron | 25.0% |
| ! | GTCAAATAAAAAAGTAGACA+TGG | + | chr1_3:55086410-55086429 | Msa0126170:intron | 25.0% |
| ! | AATGGAAACATAAATGATGA+TGG | + | chr1_3:55086568-55086587 | Msa0126170:intron | 25.0% |
| ! | ATGGAAACATAAATGATGAT+GGG | + | chr1_3:55086569-55086588 | Msa0126170:intron | 25.0% |
| !!! | TTTTTGTTGGTTAAAGAAAG+TGG | + | chr1_3:55086595-55086614 | Msa0126170:intron | 25.0% |
| !!! | GATGTTTGATTTTAATTGGT+TGG | + | chr1_3:55086689-55086708 | Msa0126170:intron | 25.0% |
| ! | AGATATAGGAACTTAATTGA+TGG | - | chr1_3:55087090-55087109 | None:intergenic | 25.0% |
| ! | AATCTTCGTGATAATATGTT+AGG | - | chr1_3:55087171-55087190 | None:intergenic | 25.0% |
| ! | AAATGTCGATATTATCATTG+TGG | + | chr1_3:55087407-55087426 | Msa0126170:intron | 25.0% |
| ! | TGGTGCAAATTAAATAATTG+AGG | + | chr1_3:55087650-55087669 | Msa0126170:intron | 25.0% |
| ! | GGTGCAAATTAAATAATTGA+GGG | + | chr1_3:55087651-55087670 | Msa0126170:intron | 25.0% |
| ! | AAATTAACATCATTGTGTTG+TGG | + | chr1_3:55088054-55088073 | Msa0126170:intron | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | + | chr1_3:55088342-55088361 | Msa0126170:intron | 25.0% |
| ! | GTCTATCTAGAGAAAATAAT+TGG | + | chr1_3:55088430-55088449 | Msa0126170:intron | 25.0% |
| ! | GAAAATAATTGGATTGAGAT+TGG | + | chr1_3:55088441-55088460 | Msa0126170:intron | 25.0% |
| ! | TAATATTCAGAAACTAAGGT+GGG | - | chr1_3:55088638-55088657 | None:intergenic | 25.0% |
| ! | TGTGTAATATTCAGAAACTA+AGG | - | chr1_3:55088642-55088661 | None:intergenic | 25.0% |
| ! | ATGTGAAGAAAAAAACAAAG+GGG | - | chr1_3:55088861-55088880 | None:intergenic | 25.0% |
| ! | GTATTAATTAGGGTATGTTT+AGG | + | chr1_3:55089000-55089019 | Msa0126170:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr1_3:55089036-55089055 | Msa0126170:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr1_3:55089037-55089056 | Msa0126170:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr1_3:55089071-55089090 | Msa0126170:intron | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr1_3:55089075-55089094 | Msa0126170:intron | 25.0% |
| !! | GAAAGGGTTAAATATGTTTT+TGG | + | chr1_3:55089206-55089225 | Msa0126170:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr1_3:55089653-55089672 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+AGG | - | chr1_3:55089264-55089283 | None:intergenic | 25.0% |
| ! | TTACACCATGATTTCAAATT+CGG | - | chr1_3:55089712-55089731 | None:intergenic | 25.0% |
| !! | TGAATTTGATGATTAGGATT+AGG | + | chr1_3:55089837-55089856 | Msa0126170:intron | 25.0% |
| ! | CCTAATCATCAAATTCATAA+AGG | - | chr1_3:55089834-55089853 | None:intergenic | 25.0% |
| !! | CCTTTATGAATTTGATGATT+AGG | + | chr1_3:55089888-55089907 | Msa0126170:intron | 25.0% |
| !! | TGAATTTGATGATTAGGATT+AGG | + | chr1_3:55089837-55089856 | Msa0126170:intron | 25.0% |
| ! | CTTCCGAATAGAAATAATAA+AGG | + | chr1_3:55090024-55090043 | Msa0126170:intron | 25.0% |
| !!! | AATAAAGGATGTTACTTTAG+GGG | + | chr1_3:55090039-55090058 | Msa0126170:intron | 25.0% |
| !! | GATTATAGCTAAATTTTCCT+GGG | - | chr1_3:55090092-55090111 | None:intergenic | 25.0% |
| ! | CATGAGATTCAAATTCAATT+TGG | - | chr1_3:55090535-55090554 | None:intergenic | 25.0% |
| ! | TTAAGCTATAATCTTATTGG+TGG | + | chr1_3:55090835-55090854 | Msa0126170:intron | 25.0% |
| !!! | TTTTTAACTACAACTTATGG+TGG | + | chr1_3:55090883-55090902 | Msa0126170:intron | 25.0% |
| !!! | TGTCTTCTTACTTTTTCTTT+TGG | + | chr1_3:55090953-55090972 | Msa0126170:intron | 25.0% |
| !! | TTCTTTCTAAGAAGCTAAAA+TGG | - | chr1_3:55091066-55091085 | None:intergenic | 25.0% |
| !!! | ATATGTGTTGTATTTTGACA+AGG | + | chr1_3:55091117-55091136 | Msa0126170:intron | 25.0% |
| !!! | GTGACTATGATTTTTTCTTT+TGG | + | chr1_3:55091144-55091163 | Msa0126170:intron | 25.0% |
| !!! | ACTATGATTTTTTCTTTTGG+TGG | + | chr1_3:55091147-55091166 | Msa0126170:intron | 25.0% |
| !!! | ATAGTTCAAATGCTATTTTG+GGG | - | chr1_3:55091278-55091297 | None:intergenic | 25.0% |
| !!! | GATAGTTCAAATGCTATTTT+GGG | - | chr1_3:55091279-55091298 | None:intergenic | 25.0% |
| !!! | TGATAGTTCAAATGCTATTT+TGG | - | chr1_3:55091280-55091299 | None:intergenic | 25.0% |
| ! | GCAACAAGACTAAAAAAATT+AGG | + | chr1_3:55091360-55091379 | Msa0126170:CDS | 25.0% |
| ACCAATCAATTCAAAACAAC+TGG | + | chr1_3:55084802-55084821 | Msa0126170:five_prime_UTR | 30.0% | |
| !!! | TCCAGTTGTTTTGAATTGAT+TGG | - | chr1_3:55084806-55084825 | None:intergenic | 30.0% |
| TACTATGTATCTAGCAAGAA+AGG | - | chr1_3:55084829-55084848 | None:intergenic | 30.0% | |
| TGAGATTTCCGATATTGAAA+TGG | + | chr1_3:55085447-55085466 | Msa0126170:CDS | 30.0% | |
| TTGATGAAGCTATTATCGAA+GGG | + | chr1_3:55085470-55085489 | Msa0126170:CDS | 30.0% | |
| TATTATCGAAGGGAAAACTA+AGG | + | chr1_3:55085480-55085499 | Msa0126170:CDS | 30.0% | |
| ! | ATGCATTTTATGCCAAATCT+AGG | + | chr1_3:55086211-55086230 | Msa0126170:intron | 30.0% |
| ! | TGCATTTTATGCCAAATCTA+GGG | + | chr1_3:55086212-55086231 | Msa0126170:intron | 30.0% |
| !! | ATGAAAAGCATTACCATGTT+TGG | - | chr1_3:55086264-55086283 | None:intergenic | 30.0% |
| GGGTATAAGAATAATCTCTT+AGG | - | chr1_3:55086489-55086508 | None:intergenic | 30.0% | |
| GGATGTAAGAATGATCTATT+AGG | + | chr1_3:55086710-55086729 | Msa0126170:intron | 30.0% | |
| ! | GATAAGTAGTTCAACTTGTT+TGG | + | chr1_3:55087291-55087310 | Msa0126170:intron | 30.0% |
| !! | TTTAATTTGCACCAATTAGC+TGG | - | chr1_3:55087644-55087663 | None:intergenic | 30.0% |
| TAGTAGTAATGCTGGATAAT+AGG | + | chr1_3:55087683-55087702 | Msa0126170:intron | 30.0% | |
| AGTAGTAATGCTGGATAATA+GGG | + | chr1_3:55087684-55087703 | Msa0126170:intron | 30.0% | |
| GGGTAATATACACAATTTCA+GGG | + | chr1_3:55087706-55087725 | Msa0126170:intron | 30.0% | |
| ATGATCAGATTATATCAGCA+GGG | - | chr1_3:55087769-55087788 | None:intergenic | 30.0% | |
| AATGATCAGATTATATCAGC+AGG | - | chr1_3:55087770-55087789 | None:intergenic | 30.0% | |
| !! | AATCGACACTCATTTTGAAA+CGG | - | chr1_3:55088111-55088130 | None:intergenic | 30.0% |
| ! | ATTTTCTCTAGATAGACTCA+AGG | - | chr1_3:55088427-55088446 | None:intergenic | 30.0% |
| AATATTCAGAAACTAAGGTG+GGG | - | chr1_3:55088637-55088656 | None:intergenic | 30.0% | |
| GTAATATTCAGAAACTAAGG+TGG | - | chr1_3:55088639-55088658 | None:intergenic | 30.0% | |
| AGGAAAATACATTCCAAGTA+TGG | + | chr1_3:55088671-55088690 | Msa0126170:intron | 30.0% | |
| GGAAAATACATTCCAAGTAT+GGG | + | chr1_3:55088672-55088691 | Msa0126170:intron | 30.0% | |
| AGATATCTGTATGACTGTAT+AGG | - | chr1_3:55088766-55088785 | None:intergenic | 30.0% | |
| TGTGAAGAAAAAAACAAAGG+GGG | - | chr1_3:55088860-55088879 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr1_3:55089038-55089057 | Msa0126170:intron | 30.0% | |
| CATCTAGTAATTTGAAAAGG+GGG | + | chr1_3:55089039-55089058 | Msa0126170:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr1_3:55089278-55089297 | None:intergenic | 30.0% | |
| ! | ACTATCCGAATTTGAAATCA+TGG | + | chr1_3:55089704-55089723 | Msa0126170:intron | 30.0% |
| GATGATTAGGATTAGGATTA+AGG | + | chr1_3:55089901-55089920 | Msa0126170:intron | 30.0% | |
| !!! | TTTCCTGGGACAATTTTTTT+CGG | - | chr1_3:55090078-55090097 | None:intergenic | 30.0% |
| ! | CGATTATAGCTAAATTTTCC+TGG | - | chr1_3:55090093-55090112 | None:intergenic | 30.0% |
| ATCCATTGCTCATTTCTATT+CGG | - | chr1_3:55090424-55090443 | None:intergenic | 30.0% | |
| GTATGTTATGTTACTCAAGT+TGG | + | chr1_3:55090476-55090495 | Msa0126170:intron | 30.0% | |
| GATTTCAACAATTCATGATG+TGG | - | chr1_3:55091420-55091439 | None:intergenic | 30.0% | |
| TCAATTCACAACAAAGACTA+TGG | + | chr1_3:55091438-55091457 | Msa0126170:CDS | 30.0% | |
| ATGAGCTATTTGCAAAACTA+TGG | + | chr1_3:55091516-55091535 | Msa0126170:CDS | 30.0% | |
| TTGCAAAACTATGGACAATT+TGG | + | chr1_3:55091525-55091544 | Msa0126170:CDS | 30.0% | |
| GTATCTAGACTTCAAGAATA+TGG | + | chr1_3:55091726-55091745 | Msa0126170:CDS | 30.0% | |
| TGGTGATTAGTATCACAAAG+TGG | - | chr1_3:55084878-55084897 | None:intergenic | 35.0% | |
| ATGACGGTAAATGTTACTGA+GGG | - | chr1_3:55085130-55085149 | None:intergenic | 35.0% | |
| ! | GTTGATGAAGCTATTATCGA+AGG | + | chr1_3:55085469-55085488 | Msa0126170:CDS | 35.0% |
| GAATATACCGGAGTTATGTA+GGG | + | chr1_3:55085546-55085565 | Msa0126170:CDS | 35.0% | |
| ! | GGATAATACTTTTACTCCGA+TGG | + | chr1_3:55085600-55085619 | Msa0126170:CDS | 35.0% |
| ATGTGTTATAGCCCTAGATT+TGG | - | chr1_3:55086226-55086245 | None:intergenic | 35.0% | |
| !! | GAAACATAAATGATGATGGG+TGG | + | chr1_3:55086572-55086591 | Msa0126170:intron | 35.0% |
| ACTGATACACTGATATACAG+TGG | + | chr1_3:55086808-55086827 | Msa0126170:intron | 35.0% | |
| AGAATGCTAATGAGTGTCTT+TGG | + | chr1_3:55087477-55087496 | Msa0126170:intron | 35.0% | |
| GAATGCTAATGAGTGTCTTT+GGG | + | chr1_3:55087478-55087497 | Msa0126170:intron | 35.0% | |
| AATGCTAATGAGTGTCTTTG+GGG | + | chr1_3:55087479-55087498 | Msa0126170:intron | 35.0% | |
| GTAGTAATGCTGGATAATAG+GGG | + | chr1_3:55087685-55087704 | Msa0126170:intron | 35.0% | |
| TAGTAATGCTGGATAATAGG+GGG | + | chr1_3:55087686-55087705 | Msa0126170:intron | 35.0% | |
| GGGGTAATATACACAATTTC+AGG | + | chr1_3:55087705-55087724 | Msa0126170:intron | 35.0% | |
| TGATCAGATTATATCAGCAG+GGG | - | chr1_3:55087768-55087787 | None:intergenic | 35.0% | |
| ! | AGCTTGTGTTTTCAACCTTA+AGG | + | chr1_3:55087848-55087867 | Msa0126170:intron | 35.0% |
| ! | GTCTGGAATCAAATACCTTA+AGG | - | chr1_3:55087866-55087885 | None:intergenic | 35.0% |
| ! | AAGGTATTTGATTCCAGACT+TGG | + | chr1_3:55087867-55087886 | Msa0126170:intron | 35.0% |
| AGGTATTTGATTCCAGACTT+GGG | + | chr1_3:55087868-55087887 | Msa0126170:intron | 35.0% | |
| GCAACTTAGCATATAGTAAG+TGG | + | chr1_3:55088013-55088032 | Msa0126170:intron | 35.0% | |
| ! | TGTCCAGAGTATTAATTGGA+GGG | - | chr1_3:55088211-55088230 | None:intergenic | 35.0% |
| ! | GTAGTGTCCAGAGTATTAAT+TGG | - | chr1_3:55088215-55088234 | None:intergenic | 35.0% |
| !!! | GACACTCATTTTAAAACGGA+GGG | + | chr1_3:55088346-55088365 | Msa0126170:intron | 35.0% |
| ATATTCAGAAACTAAGGTGG+GGG | - | chr1_3:55088636-55088655 | None:intergenic | 35.0% | |
| ACAAAGGGGGTTACATTAAA+GGG | - | chr1_3:55088847-55088866 | None:intergenic | 35.0% | |
| AACAAAGGGGGTTACATTAA+AGG | - | chr1_3:55088848-55088867 | None:intergenic | 35.0% | |
| CATACAAACAAAGGACAGTT+TGG | - | chr1_3:55088939-55088958 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | chr1_3:55089050-55089069 | Msa0126170:intron | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | chr1_3:55089051-55089070 | Msa0126170:intron | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | chr1_3:55089086-55089105 | Msa0126170:intron | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | + | chr1_3:55089087-55089106 | Msa0126170:intron | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | + | chr1_3:55089609-55089628 | Msa0126170:intron | 35.0% | |
| CATGGTGTAATGTATGTATG+TGG | + | chr1_3:55089722-55089741 | Msa0126170:intron | 35.0% | |
| GAAAAACAACGATTGTTCAC+GGG | - | chr1_3:55089771-55089790 | None:intergenic | 35.0% | |
| CGAAAAACAACGATTGTTCA+CGG | - | chr1_3:55089772-55089791 | None:intergenic | 35.0% | |
| TAACACGTGTTGCAAGTAAA+AGG | - | chr1_3:55089807-55089826 | None:intergenic | 35.0% | |
| !!! | TTCCTGGGACAATTTTTTTC+GGG | - | chr1_3:55090077-55090096 | None:intergenic | 35.0% |
| AGACTCCATCTATTATCAGT+GGG | + | chr1_3:55090129-55090148 | Msa0126170:intron | 35.0% | |
| TACAGCAAAACCCATTTAGT+GGG | - | chr1_3:55090181-55090200 | None:intergenic | 35.0% | |
| ! | AATGGGTTTCGTTGTTCATT+CGG | - | chr1_3:55090257-55090276 | None:intergenic | 35.0% |
| AAACAGGCTCCATAATACAT+GGG | - | chr1_3:55090293-55090312 | None:intergenic | 35.0% | |
| AAAACAGGCTCCATAATACA+TGG | - | chr1_3:55090294-55090313 | None:intergenic | 35.0% | |
| !!! | AAAGCTCGGGACAATTTTTT+TGG | + | chr1_3:55090350-55090369 | Msa0126170:intron | 35.0% |
| !!! | AAGCTCGGGACAATTTTTTT+GGG | + | chr1_3:55090351-55090370 | Msa0126170:intron | 35.0% |
| TTCCGAATAGAAATGAGCAA+TGG | + | chr1_3:55090419-55090438 | Msa0126170:intron | 35.0% | |
| !! | GTTACTCAAGTTGGTAAAGT+TGG | + | chr1_3:55090485-55090504 | Msa0126170:intron | 35.0% |
| GACACAGTTGTTAACCAAAT+GGG | - | chr1_3:55090747-55090766 | None:intergenic | 35.0% | |
| ! | TAACAACTGTGTCGTTAATC+TGG | + | chr1_3:55090754-55090773 | Msa0126170:intron | 35.0% |
| TTGGGAATCACTTTGTATTG+AGG | + | chr1_3:55090924-55090943 | Msa0126170:intron | 35.0% | |
| ! | ACAAGAAGTGTGGAAAATTC+AGG | - | chr1_3:55091011-55091030 | None:intergenic | 35.0% |
| CTTCTTGTGCTGAAAATGAA+AGG | + | chr1_3:55091023-55091042 | Msa0126170:intron | 35.0% | |
| TAATTAACAGGAGCAGTATG+TGG | + | chr1_3:55091180-55091199 | Msa0126170:intron | 35.0% | |
| AATTAACAGGAGCAGTATGT+GGG | + | chr1_3:55091181-55091200 | Msa0126170:intron | 35.0% | |
| TGTTGGTCCTAATAGCATTA+TGG | - | chr1_3:55091250-55091269 | None:intergenic | 35.0% | |
| TTGTTGCAAACACTAATGCA+CGG | - | chr1_3:55091347-55091366 | None:intergenic | 35.0% | |
| TCAACAATTCATGATGTGGA+TGG | - | chr1_3:55091416-55091435 | None:intergenic | 35.0% | |
| CACAACAAAGACTATGGTTA+TGG | + | chr1_3:55091444-55091463 | Msa0126170:CDS | 35.0% | |
| AACAAAGACTATGGTTATGG+TGG | + | chr1_3:55091447-55091466 | Msa0126170:CDS | 35.0% | |
| ! | CTATGGACAATTTGGTTTCA+TGG | + | chr1_3:55091533-55091552 | Msa0126170:CDS | 35.0% |
| ! | GAAACACTTATGTCTTGTTC+TGG | + | chr1_3:55091576-55091595 | Msa0126170:CDS | 35.0% |
| ! | TAGTAGTGAGTTGAATTCTG+AGG | + | chr1_3:55091608-55091627 | Msa0126170:CDS | 35.0% |
| ! | TGAGTTGAATTCTGAGGAAA+AGG | + | chr1_3:55091614-55091633 | Msa0126170:CDS | 35.0% |
| AGGATGTCAATAGGGTATAT+TGG | + | chr1_3:55091666-55091685 | Msa0126170:CDS | 35.0% | |
| GGATGTCAATAGGGTATATT+GGG | + | chr1_3:55091667-55091686 | Msa0126170:CDS | 35.0% | |
| AATAGGGTATATTGGGACTT+TGG | + | chr1_3:55091674-55091693 | Msa0126170:CDS | 35.0% | |
| GAAATGGAATCAGCTTGAAA+AGG | + | chr1_3:55091701-55091720 | Msa0126170:CDS | 35.0% | |
| TTATGTTGTGTGTGATGTGA+AGG | + | chr1_3:55091853-55091872 | Msa0126170:three_prime_UTR | 35.0% | |
| ATGGGTTTAGTGTAGGAGAA+GGG | - | chr1_3:55084908-55084927 | None:intergenic | 40.0% | |
| !! | ATAAGGAAAGTGTCAGCCAT+GGG | - | chr1_3:55084926-55084945 | None:intergenic | 40.0% |
| TTTCGGTTTCGTCTTCGATA+CGG | - | chr1_3:55084991-55085010 | None:intergenic | 40.0% | |
| CATGACGGTAAATGTTACTG+AGG | - | chr1_3:55085131-55085150 | None:intergenic | 40.0% | |
| CTCAGTAACATTTACCGTCA+TGG | + | chr1_3:55085129-55085148 | Msa0126170:CDS | 40.0% | |
| GTAGCTTCAAGAACACTCTA+CGG | + | chr1_3:55085361-55085380 | Msa0126170:CDS | 40.0% | |
| GTTGTTATGTTGCATGTACG+TGG | - | chr1_3:55085418-55085437 | None:intergenic | 40.0% | |
| ATCAGTCTCAAACCCTACTT+TGG | + | chr1_3:55085516-55085535 | Msa0126170:CDS | 40.0% | |
| CGAATATACCGGAGTTATGT+AGG | + | chr1_3:55085545-55085564 | Msa0126170:CDS | 40.0% | |
| AGTATCTCGAAGTACATCAG+TGG | + | chr1_3:55085664-55085683 | Msa0126170:CDS | 40.0% | |
| !!! | TGATGATGGGTGGTTTTTGT+TGG | + | chr1_3:55086582-55086601 | Msa0126170:intron | 40.0% |
| ATTGAGACCGTCTGAAAAGT+CGG | - | chr1_3:55086984-55087003 | None:intergenic | 40.0% | |
| ! | ACTTTTCAGACGGTCTCAAT+AGG | + | chr1_3:55086984-55087003 | Msa0126170:intron | 40.0% |
| !! | TACTTTGAAGCGCAGAAAGT+CGG | + | chr1_3:55087614-55087633 | Msa0126170:intron | 40.0% |
| GTGCAAAGTAGTAGTAATGC+TGG | + | chr1_3:55087675-55087694 | Msa0126170:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_3:55088107-55088126 | None:intergenic | 40.0% |
| GTACCCTCCAATTAATACTC+TGG | + | chr1_3:55088205-55088224 | Msa0126170:intron | 40.0% | |
| ! | GTGTCCAGAGTATTAATTGG+AGG | - | chr1_3:55088212-55088231 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTAAAACGG+AGG | + | chr1_3:55088345-55088364 | Msa0126170:intron | 40.0% |
| !! | AATGGTCTCATCGGTTCAAA+GGG | - | chr1_3:55088392-55088411 | None:intergenic | 40.0% |
| TTCGTCATCAATGGTCTCAT+CGG | - | chr1_3:55088401-55088420 | None:intergenic | 40.0% | |
| TCAAGGAAGTTCGTCATCAA+TGG | - | chr1_3:55088410-55088429 | None:intergenic | 40.0% | |
| AATTGGATTGAGATTGGACG+TGG | + | chr1_3:55088447-55088466 | Msa0126170:intron | 40.0% | |
| ATTCCCATTAGTTCACCACT+TGG | + | chr1_3:55088529-55088548 | Msa0126170:intron | 40.0% | |
| TTCCCATTAGTTCACCACTT+GGG | + | chr1_3:55088530-55088549 | Msa0126170:intron | 40.0% | |
| TGACCATACCACCATATCAT+CGG | + | chr1_3:55088553-55088572 | Msa0126170:intron | 40.0% | |
| TTCAACTCACTCCGATGATA+TGG | - | chr1_3:55088567-55088586 | None:intergenic | 40.0% | |
| GGTTAGATGGGATAGTTGTT+TGG | - | chr1_3:55088593-55088612 | None:intergenic | 40.0% | |
| ! | TGGATGGATTCTGGTTAGAT+GGG | - | chr1_3:55088605-55088624 | None:intergenic | 40.0% |
| ! | GAATGAATGTGGATGGATTC+TGG | - | chr1_3:55088614-55088633 | None:intergenic | 40.0% |
| CAGACTCCATCTATTATCAG+TGG | + | chr1_3:55090128-55090147 | Msa0126170:intron | 40.0% | |
| CATGACCCACTGATAATAGA+TGG | - | chr1_3:55090137-55090156 | None:intergenic | 40.0% | |
| CATCTATTATCAGTGGGTCA+TGG | + | chr1_3:55090135-55090154 | Msa0126170:intron | 40.0% | |
| ATGGGAATTCACCCACTAAA+TGG | + | chr1_3:55090167-55090186 | Msa0126170:intron | 40.0% | |
| TGGGAATTCACCCACTAAAT+GGG | + | chr1_3:55090168-55090187 | Msa0126170:intron | 40.0% | |
| GTACAGCAAAACCCATTTAG+TGG | - | chr1_3:55090182-55090201 | None:intergenic | 40.0% | |
| !! | GTTTTGCTGTACATTCGTGA+GGG | + | chr1_3:55090190-55090209 | Msa0126170:intron | 40.0% |
| TTCGGGAGGGGAAAATAAAT+GGG | - | chr1_3:55090239-55090258 | None:intergenic | 40.0% | |
| ATTCGGGAGGGGAAAATAAA+TGG | - | chr1_3:55090240-55090259 | None:intergenic | 40.0% | |
| ATGGGTTTCGTTGTTCATTC+GGG | - | chr1_3:55090256-55090275 | None:intergenic | 40.0% | |
| GAACAACGAAACCCATTTAG+TGG | + | chr1_3:55090260-55090279 | Msa0126170:intron | 40.0% | |
| TGGGAATTCAGCCACTAAAT+GGG | - | chr1_3:55090274-55090293 | None:intergenic | 40.0% | |
| ATGGGAATTCAGCCACTAAA+TGG | - | chr1_3:55090275-55090294 | None:intergenic | 40.0% | |
| GGCTGAATTCCCATGTATTA+TGG | + | chr1_3:55090281-55090300 | Msa0126170:intron | 40.0% | |
| ATTTCCCCATCATGAAAGCT+CGG | + | chr1_3:55090336-55090355 | Msa0126170:intron | 40.0% | |
| !!! | AGCTCGGGACAATTTTTTTG+GGG | + | chr1_3:55090352-55090371 | Msa0126170:intron | 40.0% |
| TGACGAATGGCTTCAAGTAT+GGG | - | chr1_3:55089997-55090016 | None:intergenic | 40.0% | |
| ATGACGAATGGCTTCAAGTA+TGG | - | chr1_3:55089998-55090017 | None:intergenic | 40.0% | |
| CGACACAGTTGTTAACCAAA+TGG | - | chr1_3:55090748-55090767 | None:intergenic | 40.0% | |
| !! | CTTAACCCGTTAGCTTGTTT+GGG | + | chr1_3:55090906-55090925 | Msa0126170:intron | 40.0% |
| TGATTCCCAAACAAGCTAAC+GGG | - | chr1_3:55090914-55090933 | None:intergenic | 40.0% | |
| GTGATTCCCAAACAAGCTAA+CGG | - | chr1_3:55090915-55090934 | None:intergenic | 40.0% | |
| ! | CATTTTCAGCACAAGAAGTG+TGG | - | chr1_3:55091021-55091040 | None:intergenic | 40.0% |
| AAGCCTAGTGAATTCCATGA+TGG | + | chr1_3:55091209-55091228 | Msa0126170:CDS | 40.0% | |
| GATCCATCATGGAATTCACT+AGG | - | chr1_3:55091215-55091234 | None:intergenic | 40.0% | |
| !!! | GCTATTTTGGGGTTCATTGT+TGG | - | chr1_3:55091267-55091286 | None:intergenic | 40.0% |
| TCAGAAAGAATCCCTCACTT+AGG | + | chr1_3:55091297-55091316 | Msa0126170:CDS | 40.0% | |
| TGCTATGTTCTTTCATCCGT+AGG | - | chr1_3:55091323-55091342 | None:intergenic | 40.0% | |
| ! | TGGACTTCTTTGCATTGACA+TGG | + | chr1_3:55091467-55091486 | Msa0126170:CDS | 40.0% |
| TGGTTTCATGGCTGTTAGTT+TGG | + | chr1_3:55091545-55091564 | Msa0126170:CDS | 40.0% | |
| ! | GGTTTCATGGCTGTTAGTTT+GGG | + | chr1_3:55091546-55091565 | Msa0126170:CDS | 40.0% |
| TGTGATGTGAAGGACATTGA+AGG | + | chr1_3:55091863-55091882 | Msa0126170:three_prime_UTR | 40.0% | |
| TGTAGGAGAAGGGAGTTAAG+TGG | - | chr1_3:55084898-55084917 | None:intergenic | 45.0% | |
| CATGGGTTTAGTGTAGGAGA+AGG | - | chr1_3:55084909-55084928 | None:intergenic | 45.0% | |
| CTTCTCCTACACTAAACCCA+TGG | + | chr1_3:55084907-55084926 | Msa0126170:exon | 45.0% | |
| !! | CATAAGGAAAGTGTCAGCCA+TGG | - | chr1_3:55084927-55084946 | None:intergenic | 45.0% |
| CTAGCAACCGCTACACAAAA+CGG | + | chr1_3:55085022-55085041 | Msa0126170:CDS | 45.0% | |
| !! | GAGAGTTTCTGGTTCCATGA+CGG | - | chr1_3:55085146-55085165 | None:intergenic | 45.0% |
| TAGACGAAGAAATCACGGTC+TGG | - | chr1_3:55085196-55085215 | None:intergenic | 45.0% | |
| GGCTGTAGACGAAGAAATCA+CGG | - | chr1_3:55085201-55085220 | None:intergenic | 45.0% | |
| TAAACGGCTGAGGTTAAGGA+CGG | - | chr1_3:55085239-55085258 | None:intergenic | 45.0% | |
| CCATTAAACGGCTGAGGTTA+AGG | - | chr1_3:55085243-55085262 | None:intergenic | 45.0% | |
| CCTTAACCTCAGCCGTTTAA+TGG | + | chr1_3:55085240-55085259 | Msa0126170:CDS | 45.0% | |
| ATCGGAAATCTCAACGAACG+TGG | - | chr1_3:55085440-55085459 | None:intergenic | 45.0% | |
| AGTCTCAAACCCTACTTTGG+CGG | + | chr1_3:55085519-55085538 | Msa0126170:CDS | 45.0% | |
| TATACCGGAGTTATGTAGGG+TGG | + | chr1_3:55085549-55085568 | Msa0126170:CDS | 45.0% | |
| ATCTCGAAGTACATCAGTGG+TGG | + | chr1_3:55085667-55085686 | Msa0126170:CDS | 45.0% | |
| TCTCGAAGTACATCAGTGGT+GGG | + | chr1_3:55085668-55085687 | Msa0126170:CDS | 45.0% | |
| TGATATACAGTGGCGTATCC+AGG | + | chr1_3:55086818-55086837 | Msa0126170:intron | 45.0% | |
| ! | TTAGTCCCCGACTTTTCAGA+CGG | + | chr1_3:55086974-55086993 | Msa0126170:intron | 45.0% |
| TTGAGACCGTCTGAAAAGTC+GGG | - | chr1_3:55086983-55087002 | None:intergenic | 45.0% | |
| !! | AATGAGTGTCTTTGGGGCAT+TGG | + | chr1_3:55087485-55087504 | Msa0126170:intron | 45.0% |
| TACACAATTTCAGGGTGTGC+AGG | + | chr1_3:55087714-55087733 | Msa0126170:intron | 45.0% | |
| TCAGATTATATCAGCAGGGG+CGG | - | chr1_3:55087765-55087784 | None:intergenic | 45.0% | |
| TTCTCTTAGATGCCCAAGTC+TGG | - | chr1_3:55087883-55087902 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_3:55088108-55088127 | None:intergenic | 45.0% |
| !! | ATGGTCTCATCGGTTCAAAG+GGG | - | chr1_3:55088391-55088410 | None:intergenic | 45.0% |
| !! | CAATGGTCTCATCGGTTCAA+AGG | - | chr1_3:55088393-55088412 | None:intergenic | 45.0% |
| CACCCAAGTGGTGAACTAAT+GGG | - | chr1_3:55088535-55088554 | None:intergenic | 45.0% | |
| TCACCCAAGTGGTGAACTAA+TGG | - | chr1_3:55088536-55088555 | None:intergenic | 45.0% | |
| ACTCCGATGATATGGTGGTA+TGG | - | chr1_3:55088559-55088578 | None:intergenic | 45.0% | |
| AACTCACTCCGATGATATGG+TGG | - | chr1_3:55088564-55088583 | None:intergenic | 45.0% | |
| ! | GTGGATGGATTCTGGTTAGA+TGG | - | chr1_3:55088606-55088625 | None:intergenic | 45.0% |
| GTCGAATCTAGACCCATACT+TGG | - | chr1_3:55088687-55088706 | None:intergenic | 45.0% | |
| GGTTACATTAAAGGGACGGA+GGG | - | chr1_3:55088839-55088858 | None:intergenic | 45.0% | |
| AGGGGGTTACATTAAAGGGA+CGG | - | chr1_3:55088843-55088862 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | chr1_3:55089091-55089110 | Msa0126170:intron | 45.0% | |
| CTCCCGAAAAAAATTGTCCC+AGG | + | chr1_3:55090072-55090091 | Msa0126170:intron | 45.0% | |
| GGGTGAATTCCCATGTATTG+TGG | - | chr1_3:55090161-55090180 | None:intergenic | 45.0% | |
| !! | GGTTTTGCTGTACATTCGTG+AGG | + | chr1_3:55090189-55090208 | Msa0126170:intron | 45.0% |
| TTTCGTTGTTCATTCGGGAG+GGG | - | chr1_3:55090251-55090270 | None:intergenic | 45.0% | |
| GTTTCGTTGTTCATTCGGGA+GGG | - | chr1_3:55090252-55090271 | None:intergenic | 45.0% | |
| TTTCCCCATCATGAAAGCTC+GGG | + | chr1_3:55090337-55090356 | Msa0126170:intron | 45.0% | |
| TTGTCCCGAGCTTTCATGAT+GGG | - | chr1_3:55090344-55090363 | None:intergenic | 45.0% | |
| ATTGTCCCGAGCTTTCATGA+TGG | - | chr1_3:55090345-55090364 | None:intergenic | 45.0% | |
| GACGAATGGCTTCAAGTATG+GGG | - | chr1_3:55090390-55090409 | None:intergenic | 45.0% | |
| !!! | GCGCTACTTTTCAACCCATT+TGG | + | chr1_3:55090730-55090749 | Msa0126170:intron | 45.0% |
| !! | GCTTAACCCGTTAGCTTGTT+TGG | + | chr1_3:55090905-55090924 | Msa0126170:intron | 45.0% |
| ATGGAATTCACTAGGCTTGC+AGG | - | chr1_3:55091207-55091226 | None:intergenic | 45.0% | |
| CTAATAGCATTATGGCCCCT+TGG | - | chr1_3:55091242-55091261 | None:intergenic | 45.0% | |
| CAAGGGGCCATAATGCTATT+AGG | + | chr1_3:55091240-55091259 | Msa0126170:CDS | 45.0% | |
| GGATTCAAGGTAATCTACCC+TGG | + | chr1_3:55091381-55091400 | Msa0126170:CDS | 45.0% | |
| CATGATGTGGATGGTCTTCT+AGG | - | chr1_3:55091407-55091426 | None:intergenic | 45.0% | |
| TCTGAGGAAAAGGTTCTTGC+TGG | + | chr1_3:55091624-55091643 | Msa0126170:CDS | 45.0% | |
| GTCTGGTGAGGATGTCAATA+GGG | + | chr1_3:55091658-55091677 | Msa0126170:CDS | 45.0% | |
| !! | TTGGGACTTTGGAGCAGAAA+TGG | + | chr1_3:55091685-55091704 | Msa0126170:CDS | 45.0% |
| !! | ATTTAATAATTTAGTATATA+CGG | - | chr1_3:55085885-55085904 | None:intergenic | 5.0% |
| !!! | GAATTATAAATATTTTAAAA+AGG | + | chr1_3:55087013-55087032 | Msa0126170:intron | 5.0% |
| !! | ATGATAATTTAATAATATTT+AGG | - | chr1_3:55088507-55088526 | None:intergenic | 5.0% |
| !! | ATAAATTAATAGTATTAATT+AGG | + | chr1_3:55088989-55089008 | Msa0126170:intron | 5.0% |
| !! | TAAATTAATAGTATTAATTA+GGG | + | chr1_3:55088990-55089009 | Msa0126170:intron | 5.0% |
| !!! | ATTTATTATTATACATTTTA+AGG | - | chr1_3:55089172-55089191 | None:intergenic | 5.0% |
| !!! | ATAATATTTTGAATTTTTTT+TGG | - | chr1_3:55089377-55089396 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr1_3:55089448-55089467 | Msa0126170:intron | 5.0% |
| !!! | ACAAAAATTAAATTTAAAAT+TGG | + | chr1_3:55089562-55089581 | Msa0126170:intron | 5.0% |
| !!! | CAAAAATTAAATTTAAAATT+GGG | + | chr1_3:55089563-55089582 | Msa0126170:intron | 5.0% |
| GTCAGCCATGGGTTTAGTGT+AGG | - | chr1_3:55084915-55084934 | None:intergenic | 50.0% | |
| TTCGATACGGTTTCGCTTGG+CGG | - | chr1_3:55084978-55084997 | None:intergenic | 50.0% | |
| GTCTTCGATACGGTTTCGCT+TGG | - | chr1_3:55084981-55085000 | None:intergenic | 50.0% | |
| AACATGCGTCGGAGAGTTTC+TGG | - | chr1_3:55085157-55085176 | None:intergenic | 50.0% | |
| CTTCGAGAGCGGCCATTAAA+CGG | - | chr1_3:55085255-55085274 | None:intergenic | 50.0% | |
| TGAAGCTACCACGTGTTCTC+CGG | - | chr1_3:55085350-55085369 | None:intergenic | 50.0% | |
| GCTTCAAGAACACTCTACGG+TGG | + | chr1_3:55085364-55085383 | Msa0126170:CDS | 50.0% | |
| TATTCGCCACCGCCAAAGTA+GGG | - | chr1_3:55085531-55085550 | None:intergenic | 50.0% | |
| ATATTCGCCACCGCCAAAGT+AGG | - | chr1_3:55085532-55085551 | None:intergenic | 50.0% | |
| TTTGGCGGTGGCGAATATAC+CGG | + | chr1_3:55085534-55085553 | Msa0126170:CDS | 50.0% | |
| AGTTATGTAGGGTGGCGCAT+CGG | + | chr1_3:55085557-55085576 | Msa0126170:CDS | 50.0% | |
| TACTCCGATGGTGATTTCGC+CGG | + | chr1_3:55085612-55085631 | Msa0126170:CDS | 50.0% | |
| TTCACCGGCGAAATCACCAT+CGG | - | chr1_3:55085619-55085638 | None:intergenic | 50.0% | |
| ACATCAGCACCAAGCTTCAC+CGG | - | chr1_3:55085634-55085653 | None:intergenic | 50.0% | |
| CTCGAAGTACATCAGTGGTG+GGG | + | chr1_3:55085669-55085688 | Msa0126170:CDS | 50.0% | |
| ! | ATTTTGCACCCCCTGACTCA+GGG | - | chr1_3:55086845-55086864 | None:intergenic | 50.0% |
| ! | AATTTTGCACCCCCTGACTC+AGG | - | chr1_3:55086846-55086865 | None:intergenic | 50.0% |
| TGAGACCGTCTGAAAAGTCG+GGG | - | chr1_3:55086982-55087001 | None:intergenic | 50.0% | |
| AAGTCGGAGAGCCAGCTAAT+TGG | + | chr1_3:55087630-55087649 | Msa0126170:intron | 50.0% | |
| !! | TGGTCTCATCGGTTCAAAGG+GGG | - | chr1_3:55088390-55088409 | None:intergenic | 50.0% |
| CTAAGGTGGGGGAATGAATG+TGG | - | chr1_3:55088625-55088644 | None:intergenic | 50.0% | |
| GGGTTACATTAAAGGGACGG+AGG | - | chr1_3:55088840-55088859 | None:intergenic | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr1_3:55089094-55089113 | Msa0126170:intron | 50.0% | |
| AACGATTGTTCACGGGAGTC+TGG | - | chr1_3:55089764-55089783 | None:intergenic | 50.0% | |
| !! | CGGAAGTGCTTGATGACGAA+TGG | - | chr1_3:55090010-55090029 | None:intergenic | 50.0% |
| TGGGTCATGGCCACAATACA+TGG | + | chr1_3:55090148-55090167 | Msa0126170:intron | 50.0% | |
| GGGTCATGGCCACAATACAT+GGG | + | chr1_3:55090149-55090168 | Msa0126170:intron | 50.0% | |
| GGTTTCGTTGTTCATTCGGG+AGG | - | chr1_3:55090253-55090272 | None:intergenic | 50.0% | |
| TGTCCCGAGCTTTCATGATG+GGG | - | chr1_3:55090343-55090362 | None:intergenic | 50.0% | |
| !! | CGGAAGTGCTTGATGACGAA+TGG | - | chr1_3:55090010-55090029 | None:intergenic | 50.0% |
| !! | TCCATGATGGATCTCCACCA+AGG | + | chr1_3:55091222-55091241 | Msa0126170:CDS | 50.0% |
| !! | CCATGATGGATCTCCACCAA+GGG | + | chr1_3:55091223-55091242 | Msa0126170:CDS | 50.0% |
| !! | CATGATGGATCTCCACCAAG+GGG | + | chr1_3:55091224-55091243 | Msa0126170:CDS | 50.0% |
| ATAGCATTATGGCCCCTTGG+TGG | - | chr1_3:55091239-55091258 | None:intergenic | 50.0% | |
| GAATCCCTCACTTAGGCCTA+CGG | + | chr1_3:55091304-55091323 | Msa0126170:CDS | 50.0% | |
| TCATCCGTAGGCCTAAGTGA+GGG | - | chr1_3:55091311-55091330 | None:intergenic | 50.0% | |
| TTCATCCGTAGGCCTAAGTG+AGG | - | chr1_3:55091312-55091331 | None:intergenic | 50.0% | |
| GTTCTTGCTGGAATCTCACC+AGG | + | chr1_3:55091636-55091655 | Msa0126170:CDS | 50.0% | |
| ATTGACATCCTCACCAGACC+TGG | - | chr1_3:55091657-55091676 | None:intergenic | 50.0% | |
| GGTCTGGTGAGGATGTCAAT+AGG | + | chr1_3:55091657-55091676 | Msa0126170:CDS | 50.0% | |
| !!! | GACGGTGCCGTTTTGTGTAG+CGG | - | chr1_3:55085032-55085051 | None:intergenic | 55.0% |
| CGACACGAATTCGGCGAACA+CGG | + | chr1_3:55085082-55085101 | Msa0126170:CDS | 55.0% | |
| ACGGTCTGGACCTAACTCTC+CGG | - | chr1_3:55085182-55085201 | None:intergenic | 55.0% | |
| GGACGGTAGGGTTGAAGTGA+CGG | - | chr1_3:55085222-55085241 | None:intergenic | 55.0% | |
| GGCTGAGGTTAAGGACGGTA+GGG | - | chr1_3:55085234-55085253 | None:intergenic | 55.0% | |
| CGTTTAATGGCCGCTCTCGA+AGG | + | chr1_3:55085253-55085272 | Msa0126170:CDS | 55.0% | |
| GGCTTCTGTACCTTCGAGAG+CGG | - | chr1_3:55085266-55085285 | None:intergenic | 55.0% | |
| TTGGAGGATTGCGGCGGAAA+TGG | - | chr1_3:55085317-55085336 | None:intergenic | 55.0% | |
| ! | GGAGGTGAGTTGGAGGATTG+CGG | - | chr1_3:55085326-55085345 | None:intergenic | 55.0% |
| ATCCTCCAACTCACCTCCAC+CGG | + | chr1_3:55085328-55085347 | Msa0126170:CDS | 55.0% | |
| CTCAAACCCTACTTTGGCGG+TGG | + | chr1_3:55085522-55085541 | Msa0126170:CDS | 55.0% | |
| TGCGCCACCCTACATAACTC+CGG | - | chr1_3:55085556-55085575 | None:intergenic | 55.0% | |
| GTGATTTCGCCGGTGAAGCT+TGG | + | chr1_3:55085622-55085641 | Msa0126170:CDS | 55.0% | |
| GGTGGGGCAGATATCATTGC+AGG | + | chr1_3:55085685-55085704 | Msa0126170:CDS | 55.0% | |
| GTATCCAGGACCCTGAGTCA+GGG | + | chr1_3:55086832-55086851 | Msa0126170:intron | 55.0% | |
| TATCCAGGACCCTGAGTCAG+GGG | + | chr1_3:55086833-55086852 | Msa0126170:intron | 55.0% | |
| TGGTGGTATGGTCACCCAAG+TGG | - | chr1_3:55088547-55088566 | None:intergenic | 55.0% | |
| GGTGGGGGAATGAATGTGGA+TGG | - | chr1_3:55088621-55088640 | None:intergenic | 55.0% | |
| CCCTTGGTGGAGATCCATCA+TGG | - | chr1_3:55091226-55091245 | None:intergenic | 55.0% | |
| GTGGATGGTCTTCTAGGCCA+GGG | - | chr1_3:55091401-55091420 | None:intergenic | 55.0% | |
| TGTGGATGGTCTTCTAGGCC+AGG | - | chr1_3:55091402-55091421 | None:intergenic | 55.0% | |
| TGCTGGAATCTCACCAGGTC+TGG | + | chr1_3:55091641-55091660 | Msa0126170:CDS | 55.0% | |
| GAATCTCACCAGGTCTGGTG+AGG | + | chr1_3:55091646-55091665 | Msa0126170:CDS | 55.0% | |
| !! | GGGTGGTGGTGGTGGTCATA+AGG | - | chr1_3:55084943-55084962 | None:intergenic | 60.0% |
| ACGGTTTCGCTTGGCGGTTG+CGG | - | chr1_3:55084972-55084991 | None:intergenic | 60.0% | |
| TGACGTGGCTGGGTCGAAGA+CGG | - | chr1_3:55085050-55085069 | None:intergenic | 60.0% | |
| GCCAGCGCACGACACGAATT+CGG | + | chr1_3:55085073-55085092 | Msa0126170:CDS | 60.0% | |
| CACGAATTCGGCGAACACGG+CGG | + | chr1_3:55085085-55085104 | Msa0126170:CDS | 60.0% | |
| ACGAATTCGGCGAACACGGC+GGG | + | chr1_3:55085086-55085105 | Msa0126170:CDS | 60.0% | |
| ACTCTCCGACGCATGTTCGC+CGG | + | chr1_3:55085160-55085179 | Msa0126170:CDS | 60.0% | |
| ACTCTCCGGCGAACATGCGT+CGG | - | chr1_3:55085168-55085187 | None:intergenic | 60.0% | |
| CGCATGTTCGCCGGAGAGTT+AGG | + | chr1_3:55085169-55085188 | Msa0126170:CDS | 60.0% | |
| CGGCTGAGGTTAAGGACGGT+AGG | - | chr1_3:55085235-55085254 | None:intergenic | 60.0% | |
| GAGCGGCCATTAAACGGCTG+AGG | - | chr1_3:55085249-55085268 | None:intergenic | 60.0% | |
| GCCGCTTACTGCACATCCAG+CGG | + | chr1_3:55085283-55085302 | Msa0126170:CDS | 60.0% | |
| GCCGCTGGATGTGCAGTAAG+CGG | - | chr1_3:55085287-55085306 | None:intergenic | 60.0% | |
| GAGGATTGCGGCGGAAATGG+CGG | - | chr1_3:55085314-55085333 | None:intergenic | 60.0% | |
| ! | GGTGAGTTGGAGGATTGCGG+CGG | - | chr1_3:55085323-55085342 | None:intergenic | 60.0% |
| GTTCTCCGGTGGAGGTGAGT+TGG | - | chr1_3:55085336-55085355 | None:intergenic | 60.0% | |
| TACCACGTGTTCTCCGGTGG+AGG | - | chr1_3:55085344-55085363 | None:intergenic | 60.0% | |
| AGCTACCACGTGTTCTCCGG+TGG | - | chr1_3:55085347-55085366 | None:intergenic | 60.0% | |
| TGTAGGGTGGCGCATCGGAA+AGG | + | chr1_3:55085562-55085581 | Msa0126170:CDS | 60.0% | |
| GGCGCATCGGAAAGGAGTGA+CGG | + | chr1_3:55085570-55085589 | Msa0126170:CDS | 60.0% | |
| GCATCGGAAAGGAGTGACGG+TGG | + | chr1_3:55085573-55085592 | Msa0126170:CDS | 60.0% | |
| TCGGAAAGGAGTGACGGTGG+TGG | + | chr1_3:55085576-55085595 | Msa0126170:CDS | 60.0% | |
| ! | GAAAGGAGTGACGGTGGTGG+TGG | + | chr1_3:55085579-55085598 | Msa0126170:CDS | 60.0% |
| CGTATCCAGGACCCTGAGTC+AGG | + | chr1_3:55086831-55086850 | Msa0126170:intron | 60.0% | |
| ATCCAGGACCCTGAGTCAGG+GGG | + | chr1_3:55086834-55086853 | Msa0126170:intron | 60.0% | |
| CAGGTGCACACCCTCACCAA+GGG | + | chr1_3:55087733-55087752 | Msa0126170:intron | 60.0% | |
| AGGTGCACACCCTCACCAAG+GGG | + | chr1_3:55087734-55087753 | Msa0126170:intron | 60.0% | |
| GTTTCGCTTGGCGGTTGCGG+TGG | - | chr1_3:55084969-55084988 | None:intergenic | 65.0% | |
| ! | CGCTGGCTAGTGACGTGGCT+GGG | - | chr1_3:55085060-55085079 | None:intergenic | 65.0% |
| !! | TCGTGCGCTGGCTAGTGACG+TGG | - | chr1_3:55085065-55085084 | None:intergenic | 65.0% |
| GCCGAATTCGTGTCGTGCGC+TGG | - | chr1_3:55085077-55085096 | None:intergenic | 65.0% | |
| CGAATTCGGCGAACACGGCG+GGG | + | chr1_3:55085087-55085106 | Msa0126170:CDS | 65.0% | |
| !! | GGAAATGGCGGACATGCCGC+TGG | - | chr1_3:55085302-55085321 | None:intergenic | 65.0% |
| ! | CTCCGGTGGAGGTGAGTTGG+AGG | - | chr1_3:55085333-55085352 | None:intergenic | 65.0% |
| CACCTCCACCGGAGAACACG+TGG | + | chr1_3:55085339-55085358 | Msa0126170:CDS | 65.0% | |
| GCAGGTGCACACCCTCACCA+AGG | + | chr1_3:55087732-55087751 | Msa0126170:intron | 65.0% | |
| GCGGAGCTACCCCTTGGTGA+GGG | - | chr1_3:55087746-55087765 | None:intergenic | 65.0% | |
| TCGCTTGGCGGTTGCGGTGG+CGG | - | chr1_3:55084966-55084985 | None:intergenic | 70.0% | |
| !! | GCGCTGGCTAGTGACGTGGC+TGG | - | chr1_3:55085061-55085080 | None:intergenic | 70.0% |
| CACCCCCTGACTCAGGGTCC+TGG | - | chr1_3:55086839-55086858 | None:intergenic | 70.0% | |
| GGCGGAGCTACCCCTTGGTG+AGG | - | chr1_3:55087747-55087766 | None:intergenic | 70.0% | |
| ! | CTTGGCGGTTGCGGTGGCGG+GGG | - | chr1_3:55084963-55084982 | None:intergenic | 75.0% |
| GCTTGGCGGTTGCGGTGGCG+GGG | - | chr1_3:55084964-55084983 | None:intergenic | 75.0% | |
| CGCTTGGCGGTTGCGGTGGC+GGG | - | chr1_3:55084965-55084984 | None:intergenic | 75.0% | |
| GCAGGGGCGGAGCTACCCCT+TGG | - | chr1_3:55087752-55087771 | None:intergenic | 75.0% | |
| !!! | GGTGGCGGGGGTGGTGGTGG+TGG | - | chr1_3:55084951-55084970 | None:intergenic | 80.0% |
| !!! | TGCGGTGGCGGGGGTGGTGG+TGG | - | chr1_3:55084954-55084973 | None:intergenic | 80.0% |
| !!! | GGTTGCGGTGGCGGGGGTGG+TGG | - | chr1_3:55084957-55084976 | None:intergenic | 80.0% |
| !!! | GGCGGTTGCGGTGGCGGGGG+TGG | - | chr1_3:55084960-55084979 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 55084801 | 55091964 | 55084801 | ID=Msa0126170;Name=Msa0126170 |
| chr1_3 | mRNA | 55084801 | 55091964 | 55084801 | ID=Msa0126170-mRNA-1;Parent=Msa0126170;Name=Msa0126170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=125|1|1|1|1|1|2|197|452 |
| chr1_3 | exon | 55084801 | 55085706 | 55084801 | ID=Msa0126170-mRNA-1:exon:17050;Parent=Msa0126170-mRNA-1 |
| chr1_3 | exon | 55091190 | 55091964 | 55091190 | ID=Msa0126170-mRNA-1:exon:17051;Parent=Msa0126170-mRNA-1 |
| chr1_3 | five_prime_UTR | 55084801 | 55084925 | 55084801 | ID=Msa0126170-mRNA-1:five_prime_utr;Parent=Msa0126170-mRNA-1 |
| chr1_3 | CDS | 55084926 | 55085706 | 55084926 | ID=Msa0126170-mRNA-1:cds;Parent=Msa0126170-mRNA-1 |
| chr1_3 | CDS | 55091190 | 55091767 | 55091190 | ID=Msa0126170-mRNA-1:cds;Parent=Msa0126170-mRNA-1 |
| chr1_3 | three_prime_UTR | 55091768 | 55091964 | 55091768 | ID=Msa0126170-mRNA-1:three_prime_utr;Parent=Msa0126170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
