Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171100 | XP_013468871.1 | 96.460 | 452 | 11 | 2 | 1 | 449 | 1 | 450 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171100 | sp|Q9SGU9|MGL_ARATH | 74.299 | 428 | 104 | 2 | 19 | 443 | 17 | 441 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171100 | A0A072VNE2 | 96.460 | 452 | 11 | 2 | 1 | 449 | 1 | 450 | 0.0 | 898 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa0171100 | 0.807120 | 5.901777e-50 | -8.615850e-47 |
| Msa0078460 | Msa0171100 | 0.928059 | 4.924766e-92 | -8.615850e-47 |
| Msa0126170 | Msa0171100 | 0.927550 | 1.004790e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171100 | MtrunA17_Chr1g0189071 | 96.460 | 452 | 11 | 2 | 1 | 449 | 1 | 450 | 0.0 | 898 |
| Msa0171100 | MtrunA17_Chr3g0119851 | 77.381 | 420 | 94 | 1 | 26 | 445 | 23 | 441 | 0.0 | 664 |
| Msa0171100 | MtrunA17_Chr6g0453481 | 30.114 | 352 | 227 | 9 | 92 | 437 | 134 | 472 | 7.54e-41 | 152 |
| Msa0171100 | MtrunA17_Chr7g0217761 | 29.042 | 334 | 221 | 8 | 95 | 424 | 196 | 517 | 2.67e-37 | 143 |
| Msa0171100 | MtrunA17_Chr1g0181151 | 27.296 | 392 | 247 | 13 | 42 | 424 | 86 | 448 | 7.86e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171100 | AT1G64660.1 | 74.299 | 428 | 104 | 2 | 19 | 443 | 17 | 441 | 0.0 | 644 |
| Msa0171100 | AT3G01120.1 | 33.731 | 335 | 204 | 8 | 95 | 424 | 224 | 545 | 1.35e-49 | 177 |
| Msa0171100 | AT1G33320.2 | 30.861 | 337 | 214 | 9 | 93 | 424 | 33 | 355 | 1.24e-42 | 154 |
| Msa0171100 | AT1G33320.1 | 30.861 | 337 | 214 | 9 | 93 | 424 | 72 | 394 | 2.20e-42 | 155 |
| Msa0171100 | AT1G33320.3 | 30.435 | 322 | 205 | 9 | 108 | 424 | 3 | 310 | 3.41e-37 | 139 |
| Msa0171100 | AT3G57050.5 | 29.462 | 353 | 221 | 10 | 79 | 424 | 35 | 366 | 2.24e-35 | 135 |
| Msa0171100 | AT3G57050.4 | 29.799 | 349 | 225 | 9 | 79 | 424 | 57 | 388 | 2.54e-35 | 135 |
| Msa0171100 | AT3G57050.2 | 29.745 | 353 | 220 | 10 | 79 | 424 | 98 | 429 | 4.66e-35 | 135 |
| Msa0171100 | AT3G57050.1 | 29.745 | 353 | 220 | 10 | 79 | 424 | 113 | 444 | 5.49e-35 | 135 |
| Msa0171100 | AT3G57050.3 | 32.609 | 276 | 168 | 8 | 79 | 346 | 113 | 378 | 9.19e-34 | 130 |
Find 152 sgRNAs with CRISPR-Local
Find 413 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGTTCAAATGCTATTT+TGG | 0.073928 | 1_4:-55629411 | None:intergenic |
| TTGCAAAACTATGGACAATT+TGG | 0.197366 | 1_4:+55629659 | Msa0171100:CDS |
| AACATGCGTCGGAGAGTTTC+TGG | 0.220883 | 1_4:-55624099 | None:intergenic |
| CCTTAACCTCAGCCGTTTAA+TGG | 0.235761 | 1_4:+55624185 | Msa0171100:CDS |
| CATGATGTGGATGGTCTTCT+AGG | 0.248249 | 1_4:-55629538 | None:intergenic |
| CTATGGACAATTTGGTTTCA+TGG | 0.269872 | 1_4:+55629667 | Msa0171100:CDS |
| TGGTTTCATGGCTGTTAGTT+TGG | 0.281840 | 1_4:+55629679 | Msa0171100:CDS |
| ATGAGCTATTTGCAAAACTA+TGG | 0.283875 | 1_4:+55629650 | Msa0171100:CDS |
| ATGGAATTCACTAGGCTTGC+AGG | 0.299058 | 1_4:-55629338 | None:intergenic |
| TTCATCAACCATTTCAATAT+CGG | 0.310566 | 1_4:-55624400 | None:intergenic |
| AGGATGTCAATAGGGTATAT+TGG | 0.322482 | 1_4:+55629800 | Msa0171100:CDS |
| TGTTGGTCCTAATAGCATTA+TGG | 0.326242 | 1_4:-55629381 | None:intergenic |
| TCTGAGGAAAAGGTTCTTGC+TGG | 0.335620 | 1_4:+55629758 | Msa0171100:CDS |
| GGTTTCATGGCTGTTAGTTT+GGG | 0.336700 | 1_4:+55629680 | Msa0171100:CDS |
| CCATTAAACGGCTGAGGTTA+AGG | 0.338929 | 1_4:-55624185 | None:intergenic |
| TGCGGTGGCGTGGGTGGTGG+TGG | 0.348363 | 1_4:-55623896 | None:intergenic |
| GAAACACTTATGTCTTGTTC+TGG | 0.350339 | 1_4:+55629710 | Msa0171100:CDS |
| CAAGGGGCCATAATGCTATT+AGG | 0.360521 | 1_4:+55629374 | Msa0171100:CDS |
| ACCAATCAATTCAAAACAAC+TGG | 0.370297 | 1_4:+55623763 | Msa0171100:five_prime_UTR |
| TTGAAGGATTGCGGCGGAAA+TGG | 0.380638 | 1_4:-55624259 | None:intergenic |
| CGCATGTTCGCCGGAGAGTT+AGG | 0.381110 | 1_4:+55624114 | Msa0171100:CDS |
| TTGGGACTTTGGAGCAGAAA+TGG | 0.390914 | 1_4:+55629819 | Msa0171100:CDS |
| TCAATTCACAACAAAGACTA+TGG | 0.391666 | 1_4:+55629572 | Msa0171100:CDS |
| GGTGGGGCAGATATCATTGC+AGG | 0.399765 | 1_4:+55624630 | Msa0171100:CDS |
| GGTTGCGGTGGCGTGGGTGG+TGG | 0.399785 | 1_4:-55623899 | None:intergenic |
| GGATGTCAATAGGGTATATT+GGG | 0.402478 | 1_4:+55629801 | Msa0171100:CDS |
| TTCGATACGGTTTCGCTTGG+CGG | 0.407277 | 1_4:-55623920 | None:intergenic |
| GCCAGCGCACGACACGAATT+CGG | 0.408975 | 1_4:+55624018 | Msa0171100:CDS |
| AAAGGCAGTATCTAGACTTC+AGG | 0.410254 | 1_4:+55629853 | Msa0171100:CDS |
| CGAATATACCGGAGTTATGT+AGG | 0.411012 | 1_4:+55624490 | Msa0171100:CDS |
| CACAACAAAGACTATGGTTA+TGG | 0.412875 | 1_4:+55629578 | Msa0171100:CDS |
| GCCGAATTCGTGTCGTGCGC+TGG | 0.420373 | 1_4:-55624019 | None:intergenic |
| ACGAATTCGGCGAACACGGC+GGG | 0.421096 | 1_4:+55624031 | Msa0171100:CDS |
| GGTCTTGTGAGGATGTCAAT+AGG | 0.421102 | 1_4:+55629791 | Msa0171100:CDS |
| CGCTGGCTAGTGAGGTGGCT+GGG | 0.428885 | 1_4:-55624002 | None:intergenic |
| GGTGGCGTGGGTGGTGGTGG+TGG | 0.429294 | 1_4:-55623893 | None:intergenic |
| AATAGGGTATATTGGGACTT+TGG | 0.430260 | 1_4:+55629808 | Msa0171100:CDS |
| TGAGATTTCCGATATTGAAA+TGG | 0.430871 | 1_4:+55624392 | Msa0171100:CDS |
| TGAGTTGAATTCTGAGGAAA+AGG | 0.445451 | 1_4:+55629748 | Msa0171100:CDS |
| CTTCGAGAGCGGCCATTAAA+CGG | 0.448171 | 1_4:-55624197 | None:intergenic |
| CTTGGCGGTTGCGGTGGCGT+GGG | 0.451235 | 1_4:-55623905 | None:intergenic |
| ATCAGTCTCAAACCCAACTT+TGG | 0.460423 | 1_4:+55624461 | Msa0171100:CDS |
| TTAAATAAAACTTGATCAGA+TGG | 0.461003 | 1_4:+55630029 | Msa0171100:three_prime_UTR |
| TATTCGCCACCGCCAAAGTT+GGG | 0.471143 | 1_4:-55624473 | None:intergenic |
| GCGCTGGCTAGTGAGGTGGC+TGG | 0.471615 | 1_4:-55624003 | None:intergenic |
| CTCCGGTGGAGGTGAGTTGA+AGG | 0.475292 | 1_4:-55624275 | None:intergenic |
| GTCTTCGATACGGTTTCGCT+TGG | 0.476584 | 1_4:-55623923 | None:intergenic |
| GTCTTGTGAGGATGTCAATA+GGG | 0.477443 | 1_4:+55629792 | Msa0171100:CDS |
| GGCGGTTGCGGTGGCGTGGG+TGG | 0.479420 | 1_4:-55623902 | None:intergenic |
| TGCTATGTTCTTTCATCCGT+AGG | 0.480893 | 1_4:-55629454 | None:intergenic |
| TGAAGCTACCACGTGTTCTC+CGG | 0.481599 | 1_4:-55624292 | None:intergenic |
| ACGGTTTCGCTTGGCGGTTG+CGG | 0.488763 | 1_4:-55623914 | None:intergenic |
| GAAAGGTGTGACGGTGGTGG+TGG | 0.489400 | 1_4:+55624524 | Msa0171100:CDS |
| AAAATGTTATCTAGCAAGAA+AGG | 0.494522 | 1_4:-55623787 | None:intergenic |
| CTAATAGCATTATGGCCCCT+TGG | 0.496849 | 1_4:-55629373 | None:intergenic |
| ATCCTTCAACTCACCTCCAC+CGG | 0.497461 | 1_4:+55624273 | Msa0171100:CDS |
| GCTTGGCGGTTGCGGTGGCG+TGG | 0.501234 | 1_4:-55623906 | None:intergenic |
| CTAGCAACTGTTACACAAAA+CGG | 0.505359 | 1_4:+55623967 | Msa0171100:CDS |
| TAATTAACAGGAGCGGTATG+TGG | 0.505543 | 1_4:+55629314 | Msa0171100:intron |
| ATATTCGCCACCGCCAAAGT+TGG | 0.507901 | 1_4:-55624474 | None:intergenic |
| TGTGGATGGTCTTCTAGGCC+AGG | 0.509408 | 1_4:-55629533 | None:intergenic |
| TTTGGCGGTGGCGAATATAC+CGG | 0.510375 | 1_4:+55624479 | Msa0171100:CDS |
| GTGATTTCGCCGGTGAAGCT+TGG | 0.515648 | 1_4:+55624567 | Msa0171100:CDS |
| TATTATCGAAGGGAAAACTA+AGG | 0.516287 | 1_4:+55624425 | Msa0171100:CDS |
| GAAATGGAATCAGCTTGAAA+AGG | 0.516409 | 1_4:+55629835 | Msa0171100:CDS |
| CGACACGAATTCGGCGAACA+CGG | 0.527483 | 1_4:+55624027 | Msa0171100:CDS |
| CGGCTGAGGTTAAGGACGGT+AGG | 0.531610 | 1_4:-55624177 | None:intergenic |
| GTTCTTGCTGGAATTTCACC+AGG | 0.532752 | 1_4:+55629770 | Msa0171100:CDS |
| GGAAATGGCGGACATGCCGC+TGG | 0.533437 | 1_4:-55624244 | None:intergenic |
| TCGGAAAGGTGTGACGGTGG+TGG | 0.537491 | 1_4:+55624521 | Msa0171100:CDS |
| TTTGGGTTTCGTCTTCGATA+CGG | 0.539866 | 1_4:-55623933 | None:intergenic |
| ATAGCATTATGGCCCCTTGG+TGG | 0.543434 | 1_4:-55629370 | None:intergenic |
| ACATCAGCACCAAGCTTCAC+CGG | 0.543561 | 1_4:-55624576 | None:intergenic |
| CGTTTAATGGCCGCTCTCGA+AGG | 0.544801 | 1_4:+55624198 | Msa0171100:CDS |
| CTCAGTAACATTCACCGTCA+TGG | 0.545248 | 1_4:+55624074 | Msa0171100:CDS |
| GGACGGTAGGGTTGAAGTGA+CGG | 0.548416 | 1_4:-55624164 | None:intergenic |
| GTGGATGGTCTTCTAGGCCA+GGG | 0.553045 | 1_4:-55629532 | None:intergenic |
| TCTTTGCATTGACATGGAAA+CGG | 0.553898 | 1_4:+55629607 | Msa0171100:CDS |
| CTCAAACCCAACTTTGGCGG+TGG | 0.553955 | 1_4:+55624467 | Msa0171100:CDS |
| AGTCTCAAACCCAACTTTGG+CGG | 0.554666 | 1_4:+55624464 | Msa0171100:CDS |
| GATTTCAACAATTCATGATG+TGG | 0.554996 | 1_4:-55629551 | None:intergenic |
| TACTCCGATGGTGATTTCGC+CGG | 0.555011 | 1_4:+55624557 | Msa0171100:CDS |
| GGCTGAGGTTAAGGACGGTA+GGG | 0.556203 | 1_4:-55624176 | None:intergenic |
| GTTGATGAAGCTATTATCGA+AGG | 0.560149 | 1_4:+55624414 | Msa0171100:CDS |
| ATCTCGAAGTACATCAGTGG+TGG | 0.562122 | 1_4:+55624612 | Msa0171100:CDS |
| TCAACAATTCATGATGTGGA+TGG | 0.562975 | 1_4:-55629547 | None:intergenic |
| GTTTCGCTTGGCGGTTGCGG+TGG | 0.564473 | 1_4:-55623911 | None:intergenic |
| ACTCTCCGACGCATGTTCGC+CGG | 0.566934 | 1_4:+55624105 | Msa0171100:CDS |
| GCCGCTTACTGCACATCCAG+CGG | 0.567953 | 1_4:+55624228 | Msa0171100:CDS |
| GCCGCTGGATGTGCAGTAAG+CGG | 0.571507 | 1_4:-55624229 | None:intergenic |
| CCCTTGGTGGAGATCCATCA+TGG | 0.571861 | 1_4:-55629357 | None:intergenic |
| TCTCGAAGTACATCAGTGGT+GGG | 0.573052 | 1_4:+55624613 | Msa0171100:CDS |
| TAGACGAAGAAATCACGGTC+TGG | 0.573430 | 1_4:-55624138 | None:intergenic |
| TGGACTTCTTTGCATTGACA+TGG | 0.579725 | 1_4:+55629601 | Msa0171100:CDS |
| CCATGATGGATCTCCACCAA+GGG | 0.581063 | 1_4:+55629357 | Msa0171100:CDS |
| TACCACGTGTTCTCCGGTGG+AGG | 0.582415 | 1_4:-55624286 | None:intergenic |
| GAATATACCGGAGTTATGTA+GGG | 0.582685 | 1_4:+55624491 | Msa0171100:CDS |
| AACAAAGACTATGGTTATGG+TGG | 0.583091 | 1_4:+55629581 | Msa0171100:CDS |
| GTCAGCCATGGGTTTAGTGT+AGG | 0.583644 | 1_4:-55623857 | None:intergenic |
| ATTGACATCCTCACAAGACC+TGG | 0.585919 | 1_4:-55629788 | None:intergenic |
| GAATTTCACCAGGTCTTGTG+AGG | 0.587396 | 1_4:+55629780 | Msa0171100:CDS |
| TGTAGGGTGGCGCATCGGAA+AGG | 0.590254 | 1_4:+55624507 | Msa0171100:CDS |
| TCAGAAAGAATCCCTCACTT+AGG | 0.590587 | 1_4:+55629431 | Msa0171100:CDS |
| GAATCCCTCACTTAGGCCTA+CGG | 0.591699 | 1_4:+55629438 | Msa0171100:CDS |
| GGCGCATCGGAAAGGTGTGA+CGG | 0.593531 | 1_4:+55624515 | Msa0171100:CDS |
| AATTAACAGGAGCGGTATGT+GGG | 0.594829 | 1_4:+55629315 | Msa0171100:intron |
| CATAAGGAAAGTGTCAGCCA+TGG | 0.596216 | 1_4:-55623869 | None:intergenic |
| GAGCGGCCATTAAACGGCTG+AGG | 0.596268 | 1_4:-55624191 | None:intergenic |
| GGATTCAAGGTAATCTACCC+TGG | 0.598316 | 1_4:+55629515 | Msa0171100:CDS |
| AGCTACCACGTGTTCTCCGG+TGG | 0.598359 | 1_4:-55624289 | None:intergenic |
| GAGAGTTTCTGGTTCCATGA+CGG | 0.598458 | 1_4:-55624088 | None:intergenic |
| ATAAGGAAAGTGTCAGCCAT+GGG | 0.602885 | 1_4:-55623868 | None:intergenic |
| TCGTGCGCTGGCTAGTGAGG+TGG | 0.602922 | 1_4:-55624007 | None:intergenic |
| ATGGGTTTAGTGTAGGAAAG+TGG | 0.605599 | 1_4:-55623850 | None:intergenic |
| GGAGGTGAGTTGAAGGATTG+CGG | 0.606929 | 1_4:-55624268 | None:intergenic |
| GTTGTTATGTTGCATGTACG+TGG | 0.609929 | 1_4:-55624360 | None:intergenic |
| CGAATTCGGCGAACACGGCG+GGG | 0.610524 | 1_4:+55624032 | Msa0171100:CDS |
| TGTGATGTGAAGGACATTGA+AGG | 0.611200 | 1_4:+55629989 | Msa0171100:three_prime_UTR |
| TTATGTTGTGTGTGATGTGA+AGG | 0.611475 | 1_4:+55629979 | Msa0171100:three_prime_UTR |
| AAGGATTGCGGCGGAAATGG+CGG | 0.612606 | 1_4:-55624256 | None:intergenic |
| TCCATGATGGATCTCCACCA+AGG | 0.615639 | 1_4:+55629356 | Msa0171100:CDS |
| GATCCATCATGGAATTCACT+AGG | 0.617884 | 1_4:-55629346 | None:intergenic |
| GTAGCTTCAAGAACACTCTA+CGG | 0.618404 | 1_4:+55624306 | Msa0171100:CDS |
| CACCTCCACCGGAGAACACG+TGG | 0.620711 | 1_4:+55624284 | Msa0171100:CDS |
| TTCATCCGTAGGCCTAAGTG+AGG | 0.623607 | 1_4:-55629443 | None:intergenic |
| AGTTATGTAGGGTGGCGCAT+CGG | 0.629436 | 1_4:+55624502 | Msa0171100:CDS |
| ATCGGAAATCTCAACGAACG+TGG | 0.632380 | 1_4:-55624382 | None:intergenic |
| CTCGAAGTACATCAGTGGTG+GGG | 0.633280 | 1_4:+55624614 | Msa0171100:CDS |
| ACTTTCCTACACTAAACCCA+TGG | 0.633686 | 1_4:+55623852 | Msa0171100:exon |
| ACTCTCCGGCGAACATGCGT+CGG | 0.635084 | 1_4:-55624110 | None:intergenic |
| GGCTGTAGACGAAGAAATCA+CGG | 0.636097 | 1_4:-55624143 | None:intergenic |
| ACGGTCTGGACCTAACTCTC+CGG | 0.637564 | 1_4:-55624124 | None:intergenic |
| AACTGTTACACAAAACGGCA+CGG | 0.638763 | 1_4:+55623972 | Msa0171100:CDS |
| GTGTCGTGCGCTGGCTAGTG+AGG | 0.640001 | 1_4:-55624010 | None:intergenic |
| ATGACGGTGAATGTTACTGA+GGG | 0.640177 | 1_4:-55624072 | None:intergenic |
| TTGATGAAGCTATTATCGAA+GGG | 0.644569 | 1_4:+55624415 | Msa0171100:CDS |
| TAGTAGTGAGTTGAATTCTG+AGG | 0.646330 | 1_4:+55629742 | Msa0171100:CDS |
| CACGAATTCGGCGAACACGG+CGG | 0.647787 | 1_4:+55624030 | Msa0171100:CDS |
| CATGACGGTGAATGTTACTG+AGG | 0.648377 | 1_4:-55624073 | None:intergenic |
| GGCTTCTGTACCTTCGAGAG+CGG | 0.650176 | 1_4:-55624208 | None:intergenic |
| AAGCCTAGTGAATTCCATGA+TGG | 0.650789 | 1_4:+55629343 | Msa0171100:CDS |
| TGCGCCACCCTACATAACTC+CGG | 0.657885 | 1_4:-55624498 | None:intergenic |
| TAAACGGCTGAGGTTAAGGA+CGG | 0.667746 | 1_4:-55624181 | None:intergenic |
| TTCACCGGCGAAATCACCAT+CGG | 0.669207 | 1_4:-55624561 | None:intergenic |
| TCATCCGTAGGCCTAAGTGA+GGG | 0.670645 | 1_4:-55629442 | None:intergenic |
| TGGTGATTAGTATCACAAAG+TGG | 0.671303 | 1_4:-55623830 | None:intergenic |
| GCATCGGAAAGGTGTGACGG+TGG | 0.682253 | 1_4:+55624518 | Msa0171100:CDS |
| AGTATCTCGAAGTACATCAG+TGG | 0.684643 | 1_4:+55624609 | Msa0171100:CDS |
| TATACCGGAGTTATGTAGGG+TGG | 0.687231 | 1_4:+55624494 | Msa0171100:CDS |
| GCTTCAAGAACACTCTACGG+TGG | 0.691366 | 1_4:+55624309 | Msa0171100:CDS |
| GGTGAGTTGAAGGATTGCGG+CGG | 0.694569 | 1_4:-55624265 | None:intergenic |
| CATGATGGATCTCCACCAAG+GGG | 0.712867 | 1_4:+55629358 | Msa0171100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATGTGATTTTAATTA+AGG | + | chr1_4:55625485-55625504 | Msa0171100:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr1_4:55625993-55626012 | Msa0171100:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr1_4:55625994-55626013 | Msa0171100:intron | 10.0% |
| !!! | CAAAAATTAACTTTAAAATA+GGG | - | chr1_4:55626938-55626957 | None:intergenic | 10.0% |
| !!! | ACAAAAATTAACTTTAAAAT+AGG | - | chr1_4:55626939-55626958 | None:intergenic | 10.0% |
| !!! | AAAAAGTTCTAATTTTTTTT+GGG | - | chr1_4:55627012-55627031 | None:intergenic | 10.0% |
| !!! | TAAAAAGTTCTAATTTTTTT+TGG | - | chr1_4:55627013-55627032 | None:intergenic | 10.0% |
| !!! | GTAAAGATTAAAAATTTTAT+AGG | - | chr1_4:55627446-55627465 | None:intergenic | 10.0% |
| !!! | AAATTTTTAATCTTTACTTT+TGG | + | chr1_4:55627449-55627468 | Msa0171100:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | chr1_4:55627529-55627548 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTGAATTTTTTT+TGG | - | chr1_4:55627561-55627580 | None:intergenic | 10.0% |
| !!! | ACTATTTTTTTAAACTCATT+AGG | + | chr1_4:55624943-55624962 | Msa0171100:intron | 15.0% |
| !!! | TTTGTCAACATATTTTTAAA+TGG | + | chr1_4:55625043-55625062 | Msa0171100:intron | 15.0% |
| !! | CAAATTTAACTATTAAAACA+TGG | + | chr1_4:55625243-55625262 | Msa0171100:intron | 15.0% |
| !!! | AAAATTTGTTATGAGAAAAT+TGG | - | chr1_4:55625292-55625311 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr1_4:55625995-55626014 | Msa0171100:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr1_4:55626058-55626077 | Msa0171100:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr1_4:55626059-55626078 | Msa0171100:intron | 15.0% |
| !!! | AATATTACACATTTTTTCAA+AGG | + | chr1_4:55626588-55626607 | Msa0171100:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr1_4:55627221-55627240 | None:intergenic | 15.0% |
| !!! | ATAGTGATTGAAAATTTTAT+AGG | - | chr1_4:55626908-55626927 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATCACTATTTT+TGG | + | chr1_4:55626911-55626930 | Msa0171100:intron | 15.0% |
| !!! | ATATGAGTTTACTTTAAAAT+AGG | + | chr1_4:55627189-55627208 | Msa0171100:intron | 15.0% |
| !!! | TATGAGTTTACTTTAAAATA+GGG | + | chr1_4:55627190-55627209 | Msa0171100:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr1_4:55627221-55627240 | Msa0171100:intron | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+GGG | + | chr1_4:55627281-55627300 | Msa0171100:intron | 15.0% |
| !! | AATTATATCTTGTAAAAGAA+AGG | + | chr1_4:55627341-55627360 | Msa0171100:intron | 15.0% |
| !! | ATTATATCTTGTAAAAGAAA+GGG | + | chr1_4:55627342-55627361 | Msa0171100:intron | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | - | chr1_4:55627385-55627404 | None:intergenic | 15.0% |
| !!! | GTCTGTTTTTTATTTTTTTT+CGG | - | chr1_4:55628243-55628262 | None:intergenic | 15.0% |
| !! | AACAAAACAAAATAAAAAAC+AGG | - | chr1_4:55628439-55628458 | None:intergenic | 15.0% |
| !!! | TTGAATAACTTTTTAAATCA+TGG | + | chr1_4:55629889-55629908 | Msa0171100:exon | 15.0% |
| !!! | TGAATAACTTTTTAAATCAT+GGG | + | chr1_4:55629890-55629909 | Msa0171100:exon | 15.0% |
| !!! | TAAGCTTTTTTTTTTGTTTG+AGG | + | chr1_4:55625092-55625111 | Msa0171100:intron | 20.0% |
| !!! | AACATGTGTCATATTTTTAT+TGG | - | chr1_4:55625454-55625473 | None:intergenic | 20.0% |
| !!! | TGTGATTTTAATTAAGGAAA+TGG | + | chr1_4:55625491-55625510 | Msa0171100:intron | 20.0% |
| !!! | ATGAGATGTTTGATTTTAAT+TGG | + | chr1_4:55625626-55625645 | Msa0171100:intron | 20.0% |
| !!! | ATGTTTGATTTTAATTGGTT+GGG | + | chr1_4:55625631-55625650 | Msa0171100:intron | 20.0% |
| !! | TCCAATGAAAAATTATTGAT+TGG | + | chr1_4:55625712-55625731 | Msa0171100:intron | 20.0% |
| !!! | ACCAATCAATAATTTTTCAT+TGG | - | chr1_4:55625716-55625735 | None:intergenic | 20.0% |
| !!! | GTGTATATTTTAAAAGAATG+AGG | + | chr1_4:55625912-55625931 | Msa0171100:intron | 20.0% |
| !!! | TTAAAATGACTCAGTTATTT+TGG | + | chr1_4:55626105-55626124 | Msa0171100:intron | 20.0% |
| !!! | TAAAATGACTCAGTTATTTT+GGG | + | chr1_4:55626106-55626125 | Msa0171100:intron | 20.0% |
| !!! | GACACTTTTTTTTAGTAAAT+GGG | + | chr1_4:55626128-55626147 | Msa0171100:intron | 20.0% |
| !! | CACAATGATGTTAATTTATT+AGG | - | chr1_4:55626264-55626283 | None:intergenic | 20.0% |
| !! | TAGTATGATATGATATACAA+GGG | - | chr1_4:55626415-55626434 | None:intergenic | 20.0% |
| !! | ATAGTATGATATGATATACA+AGG | - | chr1_4:55626416-55626435 | None:intergenic | 20.0% |
| !! | TATTGTATACCTTAAAATGT+AGG | + | chr1_4:55626803-55626822 | Msa0171100:intron | 20.0% |
| !!! | ATATTTAAGCCTACATTTTA+AGG | - | chr1_4:55626815-55626834 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | - | chr1_4:55626847-55626866 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACATT+TGG | - | chr1_4:55627217-55627236 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr1_4:55627220-55627239 | Msa0171100:intron | 20.0% |
| !! | AAATTGAAGGAAAATTATAG+AGG | + | chr1_4:55627249-55627268 | Msa0171100:intron | 20.0% |
| !! | AATTGAAGGAAAATTATAGA+GGG | + | chr1_4:55627250-55627269 | Msa0171100:intron | 20.0% |
| !!! | GGAAAAGTTGATATATTTAT+AGG | + | chr1_4:55627280-55627299 | Msa0171100:intron | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | - | chr1_4:55627308-55627327 | None:intergenic | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | - | chr1_4:55627386-55627405 | None:intergenic | 20.0% |
| !!! | TACGAATTTACTTTAAAAGA+GGG | - | chr1_4:55627476-55627495 | None:intergenic | 20.0% |
| !!! | ATACGAATTTACTTTAAAAG+AGG | - | chr1_4:55627477-55627496 | None:intergenic | 20.0% |
| !!! | TCTAAATATGTTTTTAGTCT+TGG | - | chr1_4:55627815-55627834 | None:intergenic | 20.0% |
| !! | TTACATCATGATTTCAAATT+CGG | - | chr1_4:55627842-55627861 | None:intergenic | 20.0% |
| !!! | TGAATTTGATGATTAGAATT+AGG | + | chr1_4:55627967-55627986 | Msa0171100:intron | 20.0% |
| !!! | ACTTTATGAATTTGATGATT+AGG | + | chr1_4:55627961-55627980 | Msa0171100:intron | 20.0% |
| !! | ATAGGAATTCAACTATTAAA+TGG | + | chr1_4:55628297-55628316 | Msa0171100:intron | 20.0% |
| !! | TAGGAATTCAACTATTAAAT+GGG | + | chr1_4:55628298-55628317 | Msa0171100:intron | 20.0% |
| !! | AAATTAAGCTACAATCTTAT+TGG | + | chr1_4:55628966-55628985 | Msa0171100:intron | 20.0% |
| !!! | TTGTTTTTAACTACAACTTA+TGG | + | chr1_4:55629014-55629033 | Msa0171100:intron | 20.0% |
| !!! | TTGACTATGATTTTTTCTTT+TGG | + | chr1_4:55629278-55629297 | Msa0171100:intron | 20.0% |
| !!! | GGTTTAAATTGATAATTAAC+AGG | + | chr1_4:55629302-55629321 | Msa0171100:intron | 20.0% |
| !! | ACTAAAAAAATTAGGATTCA+AGG | + | chr1_4:55629502-55629521 | Msa0171100:CDS | 20.0% |
| !!! | GAATAACTTTTTAAATCATG+GGG | + | chr1_4:55629891-55629910 | Msa0171100:exon | 20.0% |
| !!! | GATCAAGTTTTATTTAAACA+AGG | - | chr1_4:55630026-55630045 | None:intergenic | 20.0% |
| !! | TTAAATAAAACTTGATCAGA+TGG | + | chr1_4:55630029-55630048 | Msa0171100:three_prime_UTR | 20.0% |
| ! | AAAATGTTATCTAGCAAGAA+AGG | - | chr1_4:55623790-55623809 | None:intergenic | 25.0% |
| !!! | TGCTAGTTTCTTTTTTGTTT+GGG | - | chr1_4:55623953-55623972 | None:intergenic | 25.0% |
| !!! | TTGCTAGTTTCTTTTTTGTT+TGG | - | chr1_4:55623954-55623973 | None:intergenic | 25.0% |
| ! | TTCATCAACCATTTCAATAT+CGG | - | chr1_4:55624403-55624422 | None:intergenic | 25.0% |
| ! | CAAATTTAACTATCCAAACA+TGG | + | chr1_4:55625188-55625207 | Msa0171100:intron | 25.0% |
| ! | TTGGTATTCGTCAAATAAAA+AGG | - | chr1_4:55625341-55625360 | None:intergenic | 25.0% |
| ! | AGTTTGTGCAATGAAAAAAT+TGG | + | chr1_4:55625322-55625341 | Msa0171100:intron | 25.0% |
| ! | GTCAAATAAAAAAGTAGACA+TGG | + | chr1_4:55625350-55625369 | Msa0171100:intron | 25.0% |
| !!! | GTGTCATATTTTTATTGGTT+GGG | - | chr1_4:55625449-55625468 | None:intergenic | 25.0% |
| !!! | TGTGTCATATTTTTATTGGT+TGG | - | chr1_4:55625450-55625469 | None:intergenic | 25.0% |
| ! | TAAGGAAATGGAAACATAAA+TGG | + | chr1_4:55625503-55625522 | Msa0171100:intron | 25.0% |
| !!! | TTTTTGTTGGTTAAAGAAAG+TGG | + | chr1_4:55625536-55625555 | Msa0171100:intron | 25.0% |
| !!! | GATGTTTGATTTTAATTGGT+TGG | + | chr1_4:55625630-55625649 | Msa0171100:intron | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | + | chr1_4:55626017-55626036 | Msa0171100:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGTAAA+TGG | + | chr1_4:55626127-55626146 | Msa0171100:intron | 25.0% |
| ! | AAATTAACATCATTGTGTTG+TGG | + | chr1_4:55626267-55626286 | Msa0171100:intron | 25.0% |
| ! | GTCTATCTAGAGAAAATAAT+TGG | + | chr1_4:55626367-55626386 | Msa0171100:intron | 25.0% |
| ! | GAAAATAATTGGATTGAGAT+TGG | + | chr1_4:55626378-55626397 | Msa0171100:intron | 25.0% |
| ! | TAATATTCAGAAACTAAGGT+GGG | - | chr1_4:55626575-55626594 | None:intergenic | 25.0% |
| ! | TGTGTAATATTCAGAAACTA+AGG | - | chr1_4:55626579-55626598 | None:intergenic | 25.0% |
| !! | TGTAGGCTTAAATATGTTTT+TGG | + | chr1_4:55626820-55626839 | Msa0171100:intron | 25.0% |
| !!! | GGAAAAGTTGGTATATTTAT+AGG | - | chr1_4:55626848-55626867 | None:intergenic | 25.0% |
| ! | AGTTAAAGGAAAATTGTAGA+GGG | - | chr1_4:55626878-55626897 | None:intergenic | 25.0% |
| ! | AAGTTAAAGGAAAATTGTAG+AGG | - | chr1_4:55626879-55626898 | None:intergenic | 25.0% |
| ! | TTATAGGGACTAAAAGTTAA+AGG | - | chr1_4:55626892-55626911 | None:intergenic | 25.0% |
| ! | TTATAGGGACTAAAAATTGA+AGG | + | chr1_4:55627236-55627255 | Msa0171100:intron | 25.0% |
| ! | AAAATTATAGAGGGACTAAA+AGG | + | chr1_4:55627259-55627278 | Msa0171100:intron | 25.0% |
| !! | GAAAGGGTTAAATATGTTTT+TGG | + | chr1_4:55627358-55627377 | Msa0171100:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr1_4:55627416-55627435 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr1_4:55627417-55627436 | None:intergenic | 25.0% |
| !! | AAGTCGAAGAAAAATTTTAG+AGG | + | chr1_4:55627787-55627806 | Msa0171100:intron | 25.0% |
| !! | TGAATTTGATGATTAGGATT+AGG | + | chr1_4:55628024-55628043 | Msa0171100:intron | 25.0% |
| ! | CTTCCGAATAGAAATAATAA+CGG | + | chr1_4:55628154-55628173 | Msa0171100:intron | 25.0% |
| !!! | CATCCGTTATTATTTCTATT+CGG | - | chr1_4:55628160-55628179 | None:intergenic | 25.0% |
| !!! | ATAATAACGGATGTTACTTT+AGG | + | chr1_4:55628167-55628186 | Msa0171100:intron | 25.0% |
| !!! | TAATAACGGATGTTACTTTA+GGG | + | chr1_4:55628168-55628187 | Msa0171100:intron | 25.0% |
| ! | AGACTCTATTTATTATCAGT+GGG | + | chr1_4:55628259-55628278 | Msa0171100:intron | 25.0% |
| ! | CATGAGATTCAAATTCAATT+TGG | - | chr1_4:55628666-55628685 | None:intergenic | 25.0% |
| !!! | TTTTTAACTACAACTTATGG+TGG | + | chr1_4:55629017-55629036 | Msa0171100:intron | 25.0% |
| !!! | TGTCTTCTTACTTTTTCTTT+TGG | + | chr1_4:55629087-55629106 | Msa0171100:intron | 25.0% |
| !! | TTCTTTCTAAGAAGCTAAAA+TGG | - | chr1_4:55629200-55629219 | None:intergenic | 25.0% |
| !!! | ATATGTGTTGTATTTTGACA+AGG | + | chr1_4:55629251-55629270 | Msa0171100:intron | 25.0% |
| !!! | ACTATGATTTTTTCTTTTGG+TGG | + | chr1_4:55629281-55629300 | Msa0171100:intron | 25.0% |
| !! | AAATTGATAATTAACAGGAG+CGG | + | chr1_4:55629307-55629326 | Msa0171100:intron | 25.0% |
| !!! | ATAGTTCAAATGCTATTTTG+GGG | - | chr1_4:55629412-55629431 | None:intergenic | 25.0% |
| !!! | GATAGTTCAAATGCTATTTT+GGG | - | chr1_4:55629413-55629432 | None:intergenic | 25.0% |
| !!! | TGATAGTTCAAATGCTATTT+TGG | - | chr1_4:55629414-55629433 | None:intergenic | 25.0% |
| ! | GCAACAAGACTAAAAAAATT+AGG | + | chr1_4:55629494-55629513 | Msa0171100:CDS | 25.0% |
| ACCAATCAATTCAAAACAAC+TGG | + | chr1_4:55623763-55623782 | Msa0171100:five_prime_UTR | 30.0% | |
| !!! | TCCAGTTGTTTTGAATTGAT+TGG | - | chr1_4:55623767-55623786 | None:intergenic | 30.0% |
| TGAGATTTCCGATATTGAAA+TGG | + | chr1_4:55624392-55624411 | Msa0171100:CDS | 30.0% | |
| TTGATGAAGCTATTATCGAA+GGG | + | chr1_4:55624415-55624434 | Msa0171100:CDS | 30.0% | |
| TATTATCGAAGGGAAAACTA+AGG | + | chr1_4:55624425-55624444 | Msa0171100:CDS | 30.0% | |
| ! | ATGCATTTTATGCCAAATCT+AGG | + | chr1_4:55625151-55625170 | Msa0171100:intron | 30.0% |
| ! | TGCATTTTATGCCAAATCTA+GGG | + | chr1_4:55625152-55625171 | Msa0171100:intron | 30.0% |
| !! | ATGAAAAGCATTACCATGTT+TGG | - | chr1_4:55625204-55625223 | None:intergenic | 30.0% |
| AATGGAAACATAAATGGTGA+TGG | + | chr1_4:55625509-55625528 | Msa0171100:intron | 30.0% | |
| ATGGAAACATAAATGGTGAT+GGG | + | chr1_4:55625510-55625529 | Msa0171100:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr1_4:55626002-55626021 | Msa0171100:intron | 30.0% | |
| !!! | GGAAGTAGTTTGTTTTGTTT+TGG | + | chr1_4:55626170-55626189 | Msa0171100:intron | 30.0% |
| ! | ATTTTCTCTAGATAGACTCA+AGG | - | chr1_4:55626364-55626383 | None:intergenic | 30.0% |
| AATATTCAGAAACTAAGGTG+GGG | - | chr1_4:55626574-55626593 | None:intergenic | 30.0% | |
| GTAATATTCAGAAACTAAGG+TGG | - | chr1_4:55626576-55626595 | None:intergenic | 30.0% | |
| AGGAAAATACATTCCAAGTA+TGG | + | chr1_4:55626608-55626627 | Msa0171100:intron | 30.0% | |
| GGAAAATACATTCCAAGTAT+GGG | + | chr1_4:55626609-55626628 | Msa0171100:intron | 30.0% | |
| AGATATCTGTATGACTGTAT+AGG | - | chr1_4:55626699-55626718 | None:intergenic | 30.0% | |
| AAAATTGTAGAGGGACTAAA+AGG | - | chr1_4:55626869-55626888 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr1_4:55627430-55627449 | None:intergenic | 30.0% | |
| CATGATGTAATGTATGTATG+TGG | + | chr1_4:55627852-55627871 | Msa0171100:intron | 30.0% | |
| TGTTGCAAGTAAAAGGAAAT+GGG | - | chr1_4:55627930-55627949 | None:intergenic | 30.0% | |
| GATGATTAGGATTAGGATTA+AGG | + | chr1_4:55628031-55628050 | Msa0171100:intron | 30.0% | |
| !! | AATAACGGATGTTACTTTAG+GGG | + | chr1_4:55628169-55628188 | Msa0171100:intron | 30.0% |
| CAGACTCTATTTATTATCAG+TGG | + | chr1_4:55628258-55628277 | Msa0171100:intron | 30.0% | |
| AGTTGAATTCCTATGTATTG+TGG | - | chr1_4:55628291-55628310 | None:intergenic | 30.0% | |
| TTCATGAGGGGAAAATAAAT+GGG | - | chr1_4:55628369-55628388 | None:intergenic | 30.0% | |
| ATTCATGAGGGGAAAATAAA+TGG | - | chr1_4:55628370-55628389 | None:intergenic | 30.0% | |
| ATCCATTGCTCATTTCTATT+CGG | - | chr1_4:55628555-55628574 | None:intergenic | 30.0% | |
| GTATGTTATGTTACTCAAGT+TGG | + | chr1_4:55628607-55628626 | Msa0171100:intron | 30.0% | |
| GATACAGTTGTTAACCAAAT+GGG | - | chr1_4:55628878-55628897 | None:intergenic | 30.0% | |
| TTAAGCTACAATCTTATTGG+TGG | + | chr1_4:55628969-55628988 | Msa0171100:intron | 30.0% | |
| TTGTTGCAAAAACTAATGCA+CGG | - | chr1_4:55629481-55629500 | None:intergenic | 30.0% | |
| GATTTCAACAATTCATGATG+TGG | - | chr1_4:55629554-55629573 | None:intergenic | 30.0% | |
| TCAATTCACAACAAAGACTA+TGG | + | chr1_4:55629572-55629591 | Msa0171100:CDS | 30.0% | |
| ATGAGCTATTTGCAAAACTA+TGG | + | chr1_4:55629650-55629669 | Msa0171100:CDS | 30.0% | |
| TTGCAAAACTATGGACAATT+TGG | + | chr1_4:55629659-55629678 | Msa0171100:CDS | 30.0% | |
| TGGTGATTAGTATCACAAAG+TGG | - | chr1_4:55623833-55623852 | None:intergenic | 35.0% | |
| CTAGCAACTGTTACACAAAA+CGG | + | chr1_4:55623967-55623986 | Msa0171100:CDS | 35.0% | |
| ! | GTTGATGAAGCTATTATCGA+AGG | + | chr1_4:55624414-55624433 | Msa0171100:CDS | 35.0% |
| GAATATACCGGAGTTATGTA+GGG | + | chr1_4:55624491-55624510 | Msa0171100:CDS | 35.0% | |
| ! | GGATAATACTTTTACTCCGA+TGG | + | chr1_4:55624545-55624564 | Msa0171100:CDS | 35.0% |
| ATGTGTTATAGCCCTAGATT+TGG | - | chr1_4:55625166-55625185 | None:intergenic | 35.0% | |
| GGGTGTAAGAATAATCTCTT+AGG | - | chr1_4:55625429-55625448 | None:intergenic | 35.0% | |
| GGGTGTAAGAATGATCTATT+AGG | + | chr1_4:55625651-55625670 | Msa0171100:intron | 35.0% | |
| !! | GATTGAGAGCTTGTTTTCAA+AGG | + | chr1_4:55625828-55625847 | Msa0171100:intron | 35.0% |
| ! | AAGGTATTTGATTCCAGACT+TGG | + | chr1_4:55625847-55625866 | Msa0171100:intron | 35.0% |
| AGGTATTTGATTCCAGACTT+GGG | + | chr1_4:55625848-55625867 | Msa0171100:intron | 35.0% | |
| AGTAAATGGGTCAGATATTC+CGG | + | chr1_4:55626141-55626160 | Msa0171100:intron | 35.0% | |
| GCAACTTAGCATATAGTAAG+TGG | + | chr1_4:55626229-55626248 | Msa0171100:intron | 35.0% | |
| ATATTCAGAAACTAAGGTGG+GGG | - | chr1_4:55626573-55626592 | None:intergenic | 35.0% | |
| GAAAAACAACGATTGTTCAC+GGG | - | chr1_4:55627901-55627920 | None:intergenic | 35.0% | |
| CGAAAAACAACGATTGTTCA+CGG | - | chr1_4:55627902-55627921 | None:intergenic | 35.0% | |
| GTGTTGCAAGTAAAAGGAAA+TGG | - | chr1_4:55627931-55627950 | None:intergenic | 35.0% | |
| TAACACGTGTTGCAAGTAAA+AGG | - | chr1_4:55627937-55627956 | None:intergenic | 35.0% | |
| !!! | TTTCCCGGGACAATTTTTTT+GGG | - | chr1_4:55628208-55628227 | None:intergenic | 35.0% |
| ! | TTTTCCCGGGACAATTTTTT+TGG | - | chr1_4:55628209-55628228 | None:intergenic | 35.0% |
| ! | GGTTATAGCTAAATTTTCCC+GGG | - | chr1_4:55628222-55628241 | None:intergenic | 35.0% |
| ! | CGGTTATAGCTAAATTTTCC+CGG | - | chr1_4:55628223-55628242 | None:intergenic | 35.0% |
| TATTTATTATCAGTGGGCCA+TGG | + | chr1_4:55628265-55628284 | Msa0171100:intron | 35.0% | |
| AAACAGGCTCCATAATACAT+GGG | - | chr1_4:55628423-55628442 | None:intergenic | 35.0% | |
| AAAACAGGCTCCATAATACA+TGG | - | chr1_4:55628424-55628443 | None:intergenic | 35.0% | |
| ! | ATTTTCCCATTGTGAAAGCT+CGG | + | chr1_4:55628467-55628486 | Msa0171100:intron | 35.0% |
| !!! | AAAGCTCGGGACAATTTTTT+TGG | + | chr1_4:55628481-55628500 | Msa0171100:intron | 35.0% |
| !!! | AAGCTCGGGACAATTTTTTT+GGG | + | chr1_4:55628482-55628501 | Msa0171100:intron | 35.0% |
| TTCCGAATAGAAATGAGCAA+TGG | + | chr1_4:55628550-55628569 | Msa0171100:intron | 35.0% | |
| !! | GTTACTCAAGTTGGTAAAGT+TGG | + | chr1_4:55628616-55628635 | Msa0171100:intron | 35.0% |
| CGATACAGTTGTTAACCAAA+TGG | - | chr1_4:55628879-55628898 | None:intergenic | 35.0% | |
| TAACAACTGTATCGTTGATC+TGG | + | chr1_4:55628885-55628904 | Msa0171100:intron | 35.0% | |
| TTGGGAATCACTTTGTATTG+AGG | + | chr1_4:55629058-55629077 | Msa0171100:intron | 35.0% | |
| ! | ACAAGAAGTGTGGAAAATTC+AGG | - | chr1_4:55629145-55629164 | None:intergenic | 35.0% |
| CTTCTTGTGCTGAAAATGAA+AGG | + | chr1_4:55629157-55629176 | Msa0171100:intron | 35.0% | |
| TGTTGGTCCTAATAGCATTA+TGG | - | chr1_4:55629384-55629403 | None:intergenic | 35.0% | |
| TCAACAATTCATGATGTGGA+TGG | - | chr1_4:55629550-55629569 | None:intergenic | 35.0% | |
| CACAACAAAGACTATGGTTA+TGG | + | chr1_4:55629578-55629597 | Msa0171100:CDS | 35.0% | |
| AACAAAGACTATGGTTATGG+TGG | + | chr1_4:55629581-55629600 | Msa0171100:CDS | 35.0% | |
| ! | TCTTTGCATTGACATGGAAA+CGG | + | chr1_4:55629607-55629626 | Msa0171100:CDS | 35.0% |
| ! | CTATGGACAATTTGGTTTCA+TGG | + | chr1_4:55629667-55629686 | Msa0171100:CDS | 35.0% |
| ! | GAAACACTTATGTCTTGTTC+TGG | + | chr1_4:55629710-55629729 | Msa0171100:CDS | 35.0% |
| ! | TAGTAGTGAGTTGAATTCTG+AGG | + | chr1_4:55629742-55629761 | Msa0171100:CDS | 35.0% |
| ! | TGAGTTGAATTCTGAGGAAA+AGG | + | chr1_4:55629748-55629767 | Msa0171100:CDS | 35.0% |
| AGGATGTCAATAGGGTATAT+TGG | + | chr1_4:55629800-55629819 | Msa0171100:CDS | 35.0% | |
| GGATGTCAATAGGGTATATT+GGG | + | chr1_4:55629801-55629820 | Msa0171100:CDS | 35.0% | |
| AATAGGGTATATTGGGACTT+TGG | + | chr1_4:55629808-55629827 | Msa0171100:CDS | 35.0% | |
| GAAATGGAATCAGCTTGAAA+AGG | + | chr1_4:55629835-55629854 | Msa0171100:CDS | 35.0% | |
| TTATGTTGTGTGTGATGTGA+AGG | + | chr1_4:55629979-55629998 | Msa0171100:three_prime_UTR | 35.0% | |
| ATGGGTTTAGTGTAGGAAAG+TGG | - | chr1_4:55623853-55623872 | None:intergenic | 40.0% | |
| ACTTTCCTACACTAAACCCA+TGG | + | chr1_4:55623852-55623871 | Msa0171100:exon | 40.0% | |
| !! | ATAAGGAAAGTGTCAGCCAT+GGG | - | chr1_4:55623871-55623890 | None:intergenic | 40.0% |
| ! | TTTGGGTTTCGTCTTCGATA+CGG | - | chr1_4:55623936-55623955 | None:intergenic | 40.0% |
| AACTGTTACACAAAACGGCA+CGG | + | chr1_4:55623972-55623991 | Msa0171100:CDS | 40.0% | |
| ATGACGGTGAATGTTACTGA+GGG | - | chr1_4:55624075-55624094 | None:intergenic | 40.0% | |
| GTAGCTTCAAGAACACTCTA+CGG | + | chr1_4:55624306-55624325 | Msa0171100:CDS | 40.0% | |
| GTTGTTATGTTGCATGTACG+TGG | - | chr1_4:55624363-55624382 | None:intergenic | 40.0% | |
| ATCAGTCTCAAACCCAACTT+TGG | + | chr1_4:55624461-55624480 | Msa0171100:CDS | 40.0% | |
| CGAATATACCGGAGTTATGT+AGG | + | chr1_4:55624490-55624509 | Msa0171100:CDS | 40.0% | |
| AGTATCTCGAAGTACATCAG+TGG | + | chr1_4:55624609-55624628 | Msa0171100:CDS | 40.0% | |
| !! | GAAACATAAATGGTGATGGG+TGG | + | chr1_4:55625513-55625532 | Msa0171100:intron | 40.0% |
| GTAAATGGGTCAGATATTCC+GGG | + | chr1_4:55626142-55626161 | Msa0171100:intron | 40.0% | |
| !! | TATGGTCTCATCGGTTCAAA+GGG | - | chr1_4:55626329-55626348 | None:intergenic | 40.0% |
| TTCGTCATCTATGGTCTCAT+CGG | - | chr1_4:55626338-55626357 | None:intergenic | 40.0% | |
| TCAAGGAAGTTCGTCATCTA+TGG | - | chr1_4:55626347-55626366 | None:intergenic | 40.0% | |
| AATTGGATTGAGATTGGACG+TGG | + | chr1_4:55626384-55626403 | Msa0171100:intron | 40.0% | |
| AAGTGGTGAACTAATGGGAA+TGG | - | chr1_4:55626467-55626486 | None:intergenic | 40.0% | |
| ATTCCCATTAGTTCACCACT+TGG | + | chr1_4:55626466-55626485 | Msa0171100:intron | 40.0% | |
| TTCCCATTAGTTCACCACTT+GGG | + | chr1_4:55626467-55626486 | Msa0171100:intron | 40.0% | |
| TGACCATACCACCATATCAT+CGG | + | chr1_4:55626490-55626509 | Msa0171100:intron | 40.0% | |
| TTCAACTCACTCCGATGATA+TGG | - | chr1_4:55626504-55626523 | None:intergenic | 40.0% | |
| GGTTAGATGGGATAGTTGTT+TGG | - | chr1_4:55626530-55626549 | None:intergenic | 40.0% | |
| ! | TGGATGGATTCTGGTTAGAT+GGG | - | chr1_4:55626542-55626561 | None:intergenic | 40.0% |
| ! | GAATGAATGTGGATGGATTC+TGG | - | chr1_4:55626551-55626570 | None:intergenic | 40.0% |
| GAGGGACTAAAAGGAAAAGT+TGG | - | chr1_4:55627268-55627287 | None:intergenic | 40.0% | |
| GCAAGTAAAAGGAAATGGGT+AGG | - | chr1_4:55627926-55627945 | None:intergenic | 40.0% | |
| TCTCCCCAAAAAAATTGTCC+CGG | + | chr1_4:55628201-55628220 | Msa0171100:intron | 40.0% | |
| !!! | TTCCCGGGACAATTTTTTTG+GGG | - | chr1_4:55628207-55628226 | None:intergenic | 40.0% |
| ATTCCTATGTATTGTGGCCA+TGG | - | chr1_4:55628285-55628304 | None:intergenic | 40.0% | |
| TTTCGCTGTTCATTCATGAG+GGG | - | chr1_4:55628381-55628400 | None:intergenic | 40.0% | |
| GTTTCGCTGTTCATTCATGA+GGG | - | chr1_4:55628382-55628401 | None:intergenic | 40.0% | |
| TGGGAATTCAGCCACTAAAT+GGG | - | chr1_4:55628404-55628423 | None:intergenic | 40.0% | |
| ATGGGAATTCAGCCACTAAA+TGG | - | chr1_4:55628405-55628424 | None:intergenic | 40.0% | |
| GGCTGAATTCCCATGTATTA+TGG | + | chr1_4:55628411-55628430 | Msa0171100:intron | 40.0% | |
| ! | TTTTCCCATTGTGAAAGCTC+GGG | + | chr1_4:55628468-55628487 | Msa0171100:intron | 40.0% |
| !!! | AGCTCGGGACAATTTTTTTG+GGG | + | chr1_4:55628483-55628502 | Msa0171100:intron | 40.0% |
| TGACGAATGGCTTCAAGTAT+GGG | - | chr1_4:55628127-55628146 | None:intergenic | 40.0% | |
| ATGACGAATGGCTTCAAGTA+TGG | - | chr1_4:55628128-55628147 | None:intergenic | 40.0% | |
| !! | CTTAACCCGTTAGCTTGTTT+GGG | + | chr1_4:55629040-55629059 | Msa0171100:intron | 40.0% |
| TGATTCCCAAACAAGCTAAC+GGG | - | chr1_4:55629048-55629067 | None:intergenic | 40.0% | |
| GTGATTCCCAAACAAGCTAA+CGG | - | chr1_4:55629049-55629068 | None:intergenic | 40.0% | |
| ! | CATTTTCAGCACAAGAAGTG+TGG | - | chr1_4:55629155-55629174 | None:intergenic | 40.0% |
| TAATTAACAGGAGCGGTATG+TGG | + | chr1_4:55629314-55629333 | Msa0171100:intron | 40.0% | |
| AATTAACAGGAGCGGTATGT+GGG | + | chr1_4:55629315-55629334 | Msa0171100:intron | 40.0% | |
| AAGCCTAGTGAATTCCATGA+TGG | + | chr1_4:55629343-55629362 | Msa0171100:CDS | 40.0% | |
| GATCCATCATGGAATTCACT+AGG | - | chr1_4:55629349-55629368 | None:intergenic | 40.0% | |
| !!! | GCTATTTTGGGGTTCATTGT+TGG | - | chr1_4:55629401-55629420 | None:intergenic | 40.0% |
| TCAGAAAGAATCCCTCACTT+AGG | + | chr1_4:55629431-55629450 | Msa0171100:CDS | 40.0% | |
| TGCTATGTTCTTTCATCCGT+AGG | - | chr1_4:55629457-55629476 | None:intergenic | 40.0% | |
| ! | TGGACTTCTTTGCATTGACA+TGG | + | chr1_4:55629601-55629620 | Msa0171100:CDS | 40.0% |
| TGGTTTCATGGCTGTTAGTT+TGG | + | chr1_4:55629679-55629698 | Msa0171100:CDS | 40.0% | |
| ! | GGTTTCATGGCTGTTAGTTT+GGG | + | chr1_4:55629680-55629699 | Msa0171100:CDS | 40.0% |
| GTCTTGTGAGGATGTCAATA+GGG | + | chr1_4:55629792-55629811 | Msa0171100:CDS | 40.0% | |
| AAAGGCAGTATCTAGACTTC+AGG | + | chr1_4:55629853-55629872 | Msa0171100:CDS | 40.0% | |
| TGTGATGTGAAGGACATTGA+AGG | + | chr1_4:55629989-55630008 | Msa0171100:three_prime_UTR | 40.0% | |
| !! | CATAAGGAAAGTGTCAGCCA+TGG | - | chr1_4:55623872-55623891 | None:intergenic | 45.0% |
| CATGACGGTGAATGTTACTG+AGG | - | chr1_4:55624076-55624095 | None:intergenic | 45.0% | |
| CTCAGTAACATTCACCGTCA+TGG | + | chr1_4:55624074-55624093 | Msa0171100:CDS | 45.0% | |
| !! | GAGAGTTTCTGGTTCCATGA+CGG | - | chr1_4:55624091-55624110 | None:intergenic | 45.0% |
| TAGACGAAGAAATCACGGTC+TGG | - | chr1_4:55624141-55624160 | None:intergenic | 45.0% | |
| GGCTGTAGACGAAGAAATCA+CGG | - | chr1_4:55624146-55624165 | None:intergenic | 45.0% | |
| TAAACGGCTGAGGTTAAGGA+CGG | - | chr1_4:55624184-55624203 | None:intergenic | 45.0% | |
| CCATTAAACGGCTGAGGTTA+AGG | - | chr1_4:55624188-55624207 | None:intergenic | 45.0% | |
| CCTTAACCTCAGCCGTTTAA+TGG | + | chr1_4:55624185-55624204 | Msa0171100:CDS | 45.0% | |
| ATCGGAAATCTCAACGAACG+TGG | - | chr1_4:55624385-55624404 | None:intergenic | 45.0% | |
| AGTCTCAAACCCAACTTTGG+CGG | + | chr1_4:55624464-55624483 | Msa0171100:CDS | 45.0% | |
| TATACCGGAGTTATGTAGGG+TGG | + | chr1_4:55624494-55624513 | Msa0171100:CDS | 45.0% | |
| ATCTCGAAGTACATCAGTGG+TGG | + | chr1_4:55624612-55624631 | Msa0171100:CDS | 45.0% | |
| TCTCGAAGTACATCAGTGGT+GGG | + | chr1_4:55624613-55624632 | Msa0171100:CDS | 45.0% | |
| !!! | TGGTGATGGGTGGTTTTTGT+TGG | + | chr1_4:55625523-55625542 | Msa0171100:intron | 45.0% |
| TTCTCTTAGATGCCCAAGTC+TGG | - | chr1_4:55625863-55625882 | None:intergenic | 45.0% | |
| CAAACTGCCTCAGATATACC+GGG | - | chr1_4:55625958-55625977 | None:intergenic | 45.0% | |
| CCAAACTGCCTCAGATATAC+CGG | - | chr1_4:55625959-55625978 | None:intergenic | 45.0% | |
| !! | ATGGTCTCATCGGTTCAAAG+GGG | - | chr1_4:55626328-55626347 | None:intergenic | 45.0% |
| !! | CTATGGTCTCATCGGTTCAA+AGG | - | chr1_4:55626330-55626349 | None:intergenic | 45.0% |
| CACCCAAGTGGTGAACTAAT+GGG | - | chr1_4:55626472-55626491 | None:intergenic | 45.0% | |
| TCACCCAAGTGGTGAACTAA+TGG | - | chr1_4:55626473-55626492 | None:intergenic | 45.0% | |
| ACTCCGATGATATGGTGGTA+TGG | - | chr1_4:55626496-55626515 | None:intergenic | 45.0% | |
| AACTCACTCCGATGATATGG+TGG | - | chr1_4:55626501-55626520 | None:intergenic | 45.0% | |
| ! | GTGGATGGATTCTGGTTAGA+TGG | - | chr1_4:55626543-55626562 | None:intergenic | 45.0% |
| GTCGAATCTAGACCCATACT+TGG | - | chr1_4:55626624-55626643 | None:intergenic | 45.0% | |
| CTCCCCAAAAAAATTGTCCC+GGG | + | chr1_4:55628202-55628221 | Msa0171100:intron | 45.0% | |
| GGTTTCGCTGTTCATTCATG+AGG | - | chr1_4:55628383-55628402 | None:intergenic | 45.0% | |
| GAACAGCGAAACCCATTTAG+TGG | + | chr1_4:55628390-55628409 | Msa0171100:intron | 45.0% | |
| TTGTCCCGAGCTTTCACAAT+GGG | - | chr1_4:55628475-55628494 | None:intergenic | 45.0% | |
| ATTGTCCCGAGCTTTCACAA+TGG | - | chr1_4:55628476-55628495 | None:intergenic | 45.0% | |
| GACGAATGGCTTCAAGTATG+GGG | - | chr1_4:55628521-55628540 | None:intergenic | 45.0% | |
| !!! | GCGCTACTTTTCAACCCATT+TGG | + | chr1_4:55628861-55628880 | Msa0171100:intron | 45.0% |
| !! | GCTTAACCCGTTAGCTTGTT+TGG | + | chr1_4:55629039-55629058 | Msa0171100:intron | 45.0% |
| ATGGAATTCACTAGGCTTGC+AGG | - | chr1_4:55629341-55629360 | None:intergenic | 45.0% | |
| CTAATAGCATTATGGCCCCT+TGG | - | chr1_4:55629376-55629395 | None:intergenic | 45.0% | |
| CAAGGGGCCATAATGCTATT+AGG | + | chr1_4:55629374-55629393 | Msa0171100:CDS | 45.0% | |
| GGATTCAAGGTAATCTACCC+TGG | + | chr1_4:55629515-55629534 | Msa0171100:CDS | 45.0% | |
| CATGATGTGGATGGTCTTCT+AGG | - | chr1_4:55629541-55629560 | None:intergenic | 45.0% | |
| TCTGAGGAAAAGGTTCTTGC+TGG | + | chr1_4:55629758-55629777 | Msa0171100:CDS | 45.0% | |
| GTTCTTGCTGGAATTTCACC+AGG | + | chr1_4:55629770-55629789 | Msa0171100:CDS | 45.0% | |
| ! | GAATTTCACCAGGTCTTGTG+AGG | + | chr1_4:55629780-55629799 | Msa0171100:CDS | 45.0% |
| ATTGACATCCTCACAAGACC+TGG | - | chr1_4:55629791-55629810 | None:intergenic | 45.0% | |
| ! | GGTCTTGTGAGGATGTCAAT+AGG | + | chr1_4:55629791-55629810 | Msa0171100:CDS | 45.0% |
| !! | TTGGGACTTTGGAGCAGAAA+TGG | + | chr1_4:55629819-55629838 | Msa0171100:CDS | 45.0% |
| !! | ATTTAATAATTTAGTATATA+CGG | - | chr1_4:55624831-55624850 | None:intergenic | 5.0% |
| !! | ATGATAATTTAATAATATTT+AGG | - | chr1_4:55626444-55626463 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+TGG | - | chr1_4:55627600-55627619 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAAATTTTTT+TGG | + | chr1_4:55627104-55627123 | Msa0171100:intron | 5.0% |
| !!! | AAAAAATTCTAAATTTTTTT+GGG | + | chr1_4:55627105-55627124 | Msa0171100:intron | 5.0% |
| !!! | ATTTATTATTATACATTTTA+GGG | - | chr1_4:55627324-55627343 | None:intergenic | 5.0% |
| !!! | AATTTATTATTATACATTTT+AGG | - | chr1_4:55627325-55627344 | None:intergenic | 5.0% |
| !!! | TAAAGATTAAAAATTTTATA+GGG | - | chr1_4:55627445-55627464 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr1_4:55627600-55627619 | Msa0171100:intron | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | + | chr1_4:55627654-55627673 | Msa0171100:intron | 5.0% |
| !!! | ACAAAAATTAAATTTAAAAT+AGG | + | chr1_4:55627727-55627746 | Msa0171100:intron | 5.0% |
| !!! | CAAAAATTAAATTTAAAATA+GGG | + | chr1_4:55627728-55627747 | Msa0171100:intron | 5.0% |
| GTCAGCCATGGGTTTAGTGT+AGG | - | chr1_4:55623860-55623879 | None:intergenic | 50.0% | |
| TTCGATACGGTTTCGCTTGG+CGG | - | chr1_4:55623923-55623942 | None:intergenic | 50.0% | |
| GTCTTCGATACGGTTTCGCT+TGG | - | chr1_4:55623926-55623945 | None:intergenic | 50.0% | |
| AACATGCGTCGGAGAGTTTC+TGG | - | chr1_4:55624102-55624121 | None:intergenic | 50.0% | |
| CTTCGAGAGCGGCCATTAAA+CGG | - | chr1_4:55624200-55624219 | None:intergenic | 50.0% | |
| TTGAAGGATTGCGGCGGAAA+TGG | - | chr1_4:55624262-55624281 | None:intergenic | 50.0% | |
| ! | GGAGGTGAGTTGAAGGATTG+CGG | - | chr1_4:55624271-55624290 | None:intergenic | 50.0% |
| ATCCTTCAACTCACCTCCAC+CGG | + | chr1_4:55624273-55624292 | Msa0171100:CDS | 50.0% | |
| TGAAGCTACCACGTGTTCTC+CGG | - | chr1_4:55624295-55624314 | None:intergenic | 50.0% | |
| GCTTCAAGAACACTCTACGG+TGG | + | chr1_4:55624309-55624328 | Msa0171100:CDS | 50.0% | |
| TATTCGCCACCGCCAAAGTT+GGG | - | chr1_4:55624476-55624495 | None:intergenic | 50.0% | |
| ATATTCGCCACCGCCAAAGT+TGG | - | chr1_4:55624477-55624496 | None:intergenic | 50.0% | |
| TTTGGCGGTGGCGAATATAC+CGG | + | chr1_4:55624479-55624498 | Msa0171100:CDS | 50.0% | |
| AGTTATGTAGGGTGGCGCAT+CGG | + | chr1_4:55624502-55624521 | Msa0171100:CDS | 50.0% | |
| TACTCCGATGGTGATTTCGC+CGG | + | chr1_4:55624557-55624576 | Msa0171100:CDS | 50.0% | |
| TTCACCGGCGAAATCACCAT+CGG | - | chr1_4:55624564-55624583 | None:intergenic | 50.0% | |
| ACATCAGCACCAAGCTTCAC+CGG | - | chr1_4:55624579-55624598 | None:intergenic | 50.0% | |
| CTCGAAGTACATCAGTGGTG+GGG | + | chr1_4:55624614-55624633 | Msa0171100:CDS | 50.0% | |
| ! | CCGGTATATCTGAGGCAGTT+TGG | + | chr1_4:55625956-55625975 | Msa0171100:intron | 50.0% |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr1_4:55626146-55626165 | Msa0171100:intron | 50.0% | |
| ACAAACTACTTCCTCCGTCC+CGG | - | chr1_4:55626163-55626182 | None:intergenic | 50.0% | |
| !! | TGGTCTCATCGGTTCAAAGG+GGG | - | chr1_4:55626327-55626346 | None:intergenic | 50.0% |
| CTAAGGTGGGGGAATGAATG+TGG | - | chr1_4:55626562-55626581 | None:intergenic | 50.0% | |
| AACGATTGTTCACGGGAGTC+TGG | - | chr1_4:55627894-55627913 | None:intergenic | 50.0% | |
| !! | CGGAAGTGCTTGATGACGAA+TGG | - | chr1_4:55628140-55628159 | None:intergenic | 50.0% |
| GGTTTCGCTGTTCATTCGTG+AGG | + | chr1_4:55628319-55628338 | Msa0171100:intron | 50.0% | |
| !! | CGGAAGTGCTTGATGACGAA+TGG | - | chr1_4:55628140-55628159 | None:intergenic | 50.0% |
| !! | TCCATGATGGATCTCCACCA+AGG | + | chr1_4:55629356-55629375 | Msa0171100:CDS | 50.0% |
| !! | CCATGATGGATCTCCACCAA+GGG | + | chr1_4:55629357-55629376 | Msa0171100:CDS | 50.0% |
| !! | CATGATGGATCTCCACCAAG+GGG | + | chr1_4:55629358-55629377 | Msa0171100:CDS | 50.0% |
| ATAGCATTATGGCCCCTTGG+TGG | - | chr1_4:55629373-55629392 | None:intergenic | 50.0% | |
| GAATCCCTCACTTAGGCCTA+CGG | + | chr1_4:55629438-55629457 | Msa0171100:CDS | 50.0% | |
| TCATCCGTAGGCCTAAGTGA+GGG | - | chr1_4:55629445-55629464 | None:intergenic | 50.0% | |
| TTCATCCGTAGGCCTAAGTG+AGG | - | chr1_4:55629446-55629465 | None:intergenic | 50.0% | |
| CGACACGAATTCGGCGAACA+CGG | + | chr1_4:55624027-55624046 | Msa0171100:CDS | 55.0% | |
| ACGGTCTGGACCTAACTCTC+CGG | - | chr1_4:55624127-55624146 | None:intergenic | 55.0% | |
| GGACGGTAGGGTTGAAGTGA+CGG | - | chr1_4:55624167-55624186 | None:intergenic | 55.0% | |
| GGCTGAGGTTAAGGACGGTA+GGG | - | chr1_4:55624179-55624198 | None:intergenic | 55.0% | |
| CGTTTAATGGCCGCTCTCGA+AGG | + | chr1_4:55624198-55624217 | Msa0171100:CDS | 55.0% | |
| GGCTTCTGTACCTTCGAGAG+CGG | - | chr1_4:55624211-55624230 | None:intergenic | 55.0% | |
| AAGGATTGCGGCGGAAATGG+CGG | - | chr1_4:55624259-55624278 | None:intergenic | 55.0% | |
| ! | GGTGAGTTGAAGGATTGCGG+CGG | - | chr1_4:55624268-55624287 | None:intergenic | 55.0% |
| CTCAAACCCAACTTTGGCGG+TGG | + | chr1_4:55624467-55624486 | Msa0171100:CDS | 55.0% | |
| TGCGCCACCCTACATAACTC+CGG | - | chr1_4:55624501-55624520 | None:intergenic | 55.0% | |
| GTGATTTCGCCGGTGAAGCT+TGG | + | chr1_4:55624567-55624586 | Msa0171100:CDS | 55.0% | |
| GGTGGGGCAGATATCATTGC+AGG | + | chr1_4:55624630-55624649 | Msa0171100:CDS | 55.0% | |
| !! | TAGAAGTACTCCCTCCGTCC+CGG | + | chr1_4:55625937-55625956 | Msa0171100:intron | 55.0% |
| CTCAGATATACCGGGACGGA+GGG | - | chr1_4:55625950-55625969 | None:intergenic | 55.0% | |
| CTGCCTCAGATATACCGGGA+CGG | - | chr1_4:55625954-55625973 | None:intergenic | 55.0% | |
| TGGTGGTATGGTCACCCAAG+TGG | - | chr1_4:55626484-55626503 | None:intergenic | 55.0% | |
| GGTGGGGGAATGAATGTGGA+TGG | - | chr1_4:55626558-55626577 | None:intergenic | 55.0% | |
| GGGCCATGGCCACAATACAT+AGG | + | chr1_4:55628279-55628298 | Msa0171100:intron | 55.0% | |
| CCCTTGGTGGAGATCCATCA+TGG | - | chr1_4:55629360-55629379 | None:intergenic | 55.0% | |
| GTGGATGGTCTTCTAGGCCA+GGG | - | chr1_4:55629535-55629554 | None:intergenic | 55.0% | |
| TGTGGATGGTCTTCTAGGCC+AGG | - | chr1_4:55629536-55629555 | None:intergenic | 55.0% | |
| !! | GGGTGGTGGTGGTGGTCATA+AGG | - | chr1_4:55623888-55623907 | None:intergenic | 60.0% |
| ACGGTTTCGCTTGGCGGTTG+CGG | - | chr1_4:55623917-55623936 | None:intergenic | 60.0% | |
| GCCAGCGCACGACACGAATT+CGG | + | chr1_4:55624018-55624037 | Msa0171100:CDS | 60.0% | |
| CACGAATTCGGCGAACACGG+CGG | + | chr1_4:55624030-55624049 | Msa0171100:CDS | 60.0% | |
| ACGAATTCGGCGAACACGGC+GGG | + | chr1_4:55624031-55624050 | Msa0171100:CDS | 60.0% | |
| ACTCTCCGACGCATGTTCGC+CGG | + | chr1_4:55624105-55624124 | Msa0171100:CDS | 60.0% | |
| ACTCTCCGGCGAACATGCGT+CGG | - | chr1_4:55624113-55624132 | None:intergenic | 60.0% | |
| CGCATGTTCGCCGGAGAGTT+AGG | + | chr1_4:55624114-55624133 | Msa0171100:CDS | 60.0% | |
| CGGCTGAGGTTAAGGACGGT+AGG | - | chr1_4:55624180-55624199 | None:intergenic | 60.0% | |
| GAGCGGCCATTAAACGGCTG+AGG | - | chr1_4:55624194-55624213 | None:intergenic | 60.0% | |
| GCCGCTTACTGCACATCCAG+CGG | + | chr1_4:55624228-55624247 | Msa0171100:CDS | 60.0% | |
| GCCGCTGGATGTGCAGTAAG+CGG | - | chr1_4:55624232-55624251 | None:intergenic | 60.0% | |
| ! | CTCCGGTGGAGGTGAGTTGA+AGG | - | chr1_4:55624278-55624297 | None:intergenic | 60.0% |
| TACCACGTGTTCTCCGGTGG+AGG | - | chr1_4:55624289-55624308 | None:intergenic | 60.0% | |
| AGCTACCACGTGTTCTCCGG+TGG | - | chr1_4:55624292-55624311 | None:intergenic | 60.0% | |
| TGTAGGGTGGCGCATCGGAA+AGG | + | chr1_4:55624507-55624526 | Msa0171100:CDS | 60.0% | |
| ! | GGCGCATCGGAAAGGTGTGA+CGG | + | chr1_4:55624515-55624534 | Msa0171100:CDS | 60.0% |
| ! | GCATCGGAAAGGTGTGACGG+TGG | + | chr1_4:55624518-55624537 | Msa0171100:CDS | 60.0% |
| ! | TCGGAAAGGTGTGACGGTGG+TGG | + | chr1_4:55624521-55624540 | Msa0171100:CDS | 60.0% |
| ! | GAAAGGTGTGACGGTGGTGG+TGG | + | chr1_4:55624524-55624543 | Msa0171100:CDS | 60.0% |
| CCTCAGATATACCGGGACGG+AGG | - | chr1_4:55625951-55625970 | None:intergenic | 60.0% | |
| CCTCCGTCCCGGTATATCTG+AGG | + | chr1_4:55625948-55625967 | Msa0171100:intron | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | + | chr1_4:55626149-55626168 | Msa0171100:intron | 60.0% | |
| GTTTCGCTTGGCGGTTGCGG+TGG | - | chr1_4:55623914-55623933 | None:intergenic | 65.0% | |
| ! | CGCTGGCTAGTGAGGTGGCT+GGG | - | chr1_4:55624005-55624024 | None:intergenic | 65.0% |
| !! | TCGTGCGCTGGCTAGTGAGG+TGG | - | chr1_4:55624010-55624029 | None:intergenic | 65.0% |
| !! | GTGTCGTGCGCTGGCTAGTG+AGG | - | chr1_4:55624013-55624032 | None:intergenic | 65.0% |
| GCCGAATTCGTGTCGTGCGC+TGG | - | chr1_4:55624022-55624041 | None:intergenic | 65.0% | |
| CGAATTCGGCGAACACGGCG+GGG | + | chr1_4:55624032-55624051 | Msa0171100:CDS | 65.0% | |
| !! | GGAAATGGCGGACATGCCGC+TGG | - | chr1_4:55624247-55624266 | None:intergenic | 65.0% |
| CACCTCCACCGGAGAACACG+TGG | + | chr1_4:55624284-55624303 | Msa0171100:CDS | 65.0% | |
| CTTGGCGGTTGCGGTGGCGT+GGG | - | chr1_4:55623908-55623927 | None:intergenic | 70.0% | |
| !! | GCGCTGGCTAGTGAGGTGGC+TGG | - | chr1_4:55624006-55624025 | None:intergenic | 70.0% |
| !! | GGTGGCGTGGGTGGTGGTGG+TGG | - | chr1_4:55623896-55623915 | None:intergenic | 75.0% |
| ! | TGCGGTGGCGTGGGTGGTGG+TGG | - | chr1_4:55623899-55623918 | None:intergenic | 75.0% |
| GGTTGCGGTGGCGTGGGTGG+TGG | - | chr1_4:55623902-55623921 | None:intergenic | 75.0% | |
| GCTTGGCGGTTGCGGTGGCG+TGG | - | chr1_4:55623909-55623928 | None:intergenic | 75.0% | |
| ! | GGCGGTTGCGGTGGCGTGGG+TGG | - | chr1_4:55623905-55623924 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55623762 | 55630090 | 55623762 | ID=Msa0171100;Name=Msa0171100 |
| chr1_4 | mRNA | 55623762 | 55630090 | 55623762 | ID=Msa0171100-mRNA-1;Parent=Msa0171100;Name=Msa0171100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=109|1|1|1|1|1|2|198|449 |
| chr1_4 | exon | 55623762 | 55624651 | 55623762 | ID=Msa0171100-mRNA-1:exon:16659;Parent=Msa0171100-mRNA-1 |
| chr1_4 | exon | 55629324 | 55630090 | 55629324 | ID=Msa0171100-mRNA-1:exon:16660;Parent=Msa0171100-mRNA-1 |
| chr1_4 | five_prime_UTR | 55623762 | 55623870 | 55623762 | ID=Msa0171100-mRNA-1:five_prime_utr;Parent=Msa0171100-mRNA-1 |
| chr1_4 | CDS | 55623871 | 55624651 | 55623871 | ID=Msa0171100-mRNA-1:cds;Parent=Msa0171100-mRNA-1 |
| chr1_4 | CDS | 55629324 | 55629892 | 55629324 | ID=Msa0171100-mRNA-1:cds;Parent=Msa0171100-mRNA-1 |
| chr1_4 | three_prime_UTR | 55629893 | 55630090 | 55629893 | ID=Msa0171100-mRNA-1:three_prime_utr;Parent=Msa0171100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
