Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078460 | XP_013468871.1 | 97.345 | 452 | 10 | 1 | 1 | 452 | 1 | 450 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078460 | sp|Q9SGU9|MGL_ARATH | 74.533 | 428 | 103 | 2 | 19 | 443 | 17 | 441 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078460 | A0A072VNE2 | 97.345 | 452 | 10 | 1 | 1 | 452 | 1 | 450 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031160 | Msa0078460 | 0.922547 | 8.536786e-89 | -8.615850e-47 |
| Msa0078460 | Msa0126170 | 0.933019 | 3.544443e-95 | -8.615850e-47 |
| Msa0078460 | Msa0171100 | 0.928059 | 4.924766e-92 | -8.615850e-47 |
| Msa0078460 | Msa0415990 | 0.806396 | 8.395396e-50 | -8.615850e-47 |
| Msa0078460 | Msa0527880 | 0.810871 | 9.289880e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078460 | MtrunA17_Chr1g0189071 | 97.345 | 452 | 10 | 1 | 1 | 452 | 1 | 450 | 0.0 | 911 |
| Msa0078460 | MtrunA17_Chr3g0119851 | 77.381 | 420 | 94 | 1 | 26 | 445 | 23 | 441 | 0.0 | 662 |
| Msa0078460 | MtrunA17_Chr6g0453481 | 30.114 | 352 | 227 | 9 | 92 | 437 | 134 | 472 | 7.60e-41 | 152 |
| Msa0078460 | MtrunA17_Chr7g0217761 | 29.042 | 334 | 221 | 8 | 95 | 424 | 196 | 517 | 2.60e-37 | 143 |
| Msa0078460 | MtrunA17_Chr1g0181151 | 27.296 | 392 | 247 | 13 | 42 | 424 | 86 | 448 | 9.30e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078460 | AT1G64660.1 | 74.533 | 428 | 103 | 2 | 19 | 443 | 17 | 441 | 0.0 | 645 |
| Msa0078460 | AT3G01120.1 | 33.731 | 335 | 204 | 8 | 95 | 424 | 224 | 545 | 1.63e-49 | 177 |
| Msa0078460 | AT1G33320.2 | 30.861 | 337 | 214 | 9 | 93 | 424 | 33 | 355 | 1.39e-42 | 154 |
| Msa0078460 | AT1G33320.1 | 30.861 | 337 | 214 | 9 | 93 | 424 | 72 | 394 | 2.41e-42 | 155 |
| Msa0078460 | AT1G33320.3 | 30.435 | 322 | 205 | 9 | 108 | 424 | 3 | 310 | 3.90e-37 | 139 |
| Msa0078460 | AT3G57050.4 | 29.745 | 353 | 220 | 10 | 79 | 424 | 57 | 388 | 2.03e-35 | 136 |
| Msa0078460 | AT3G57050.5 | 29.462 | 353 | 221 | 10 | 79 | 424 | 35 | 366 | 2.61e-35 | 135 |
| Msa0078460 | AT3G57050.1 | 29.745 | 353 | 220 | 10 | 79 | 424 | 113 | 444 | 5.34e-35 | 135 |
| Msa0078460 | AT3G57050.2 | 29.745 | 353 | 220 | 10 | 79 | 424 | 98 | 429 | 5.42e-35 | 135 |
| Msa0078460 | AT3G57050.3 | 32.609 | 276 | 168 | 8 | 79 | 346 | 113 | 378 | 9.35e-34 | 130 |
Find 151 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGTTCAAATGCTATTT+TGG | 0.073928 | 1_2:+55996966 | None:intergenic |
| AAAGTGATTCAATTCTTATT+AGG | 0.168129 | 1_2:+55996490 | None:intergenic |
| TTGCAAAACTATGGACAATT+TGG | 0.197366 | 1_2:-55996718 | Msa0078460:CDS |
| AACATGCGTCGGAGAGTTTC+TGG | 0.220883 | 1_2:+56001691 | None:intergenic |
| CGCTTGGCGGTTGCGGTGGC+GGG | 0.228790 | 1_2:+56001883 | None:intergenic |
| TCGCTTGGCGGTTGCGGTGG+CGG | 0.232225 | 1_2:+56001882 | None:intergenic |
| CATGATGTGGATGGTCTTCT+AGG | 0.248249 | 1_2:+55996839 | None:intergenic |
| AAGTGATTCAATTCTTATTA+GGG | 0.263216 | 1_2:+55996491 | None:intergenic |
| CTATGGACAATTTGGTTTCA+TGG | 0.269872 | 1_2:-55996710 | Msa0078460:CDS |
| TGGTTTCATGGCTGTTAGTT+TGG | 0.281840 | 1_2:-55996698 | Msa0078460:CDS |
| ATGAGCTATTTGCAAAACTA+TGG | 0.283875 | 1_2:-55996727 | Msa0078460:CDS |
| GTATCTAGACTTCAAGAATA+TGG | 0.292860 | 1_2:-55996517 | Msa0078460:CDS |
| ATGGAATTCACTAGGCTTGC+AGG | 0.299058 | 1_2:+55997039 | None:intergenic |
| TTCATCAACCATTTCAATAT+CGG | 0.310566 | 1_2:+56001390 | None:intergenic |
| AGGATGTCAATAGGGTATAT+TGG | 0.322482 | 1_2:-55996577 | Msa0078460:CDS |
| TGTTGGTCCTAATAGCATTA+TGG | 0.326242 | 1_2:+55996996 | None:intergenic |
| GGTTTCATGGCTGTTAGTTT+GGG | 0.336700 | 1_2:-55996697 | Msa0078460:CDS |
| CAAGGGGCCATAATGCTATT+AGG | 0.353490 | 1_2:-55997003 | Msa0078460:CDS |
| CCATTAGACGGCTGAGGTTA+AGG | 0.367268 | 1_2:+56001605 | None:intergenic |
| GAGACACTTATGTCTTGTTC+TGG | 0.369668 | 1_2:-55996667 | Msa0078460:CDS |
| TTGGAGGATTGCGGCGGAAA+TGG | 0.369797 | 1_2:+56001531 | None:intergenic |
| CGCATGTTCGCCGGAGAGTT+AGG | 0.381110 | 1_2:-56001676 | Msa0078460:CDS |
| CTTGGCGGTTGCGGTGGCGG+GGG | 0.384494 | 1_2:+56001885 | None:intergenic |
| CCTTAACCTCAGCCGTCTAA+TGG | 0.390905 | 1_2:-56001605 | Msa0078460:CDS |
| TTGGGACTTTGGAGCAGAAA+TGG | 0.390914 | 1_2:-55996558 | Msa0078460:CDS |
| TCAATTCACAACAAAGACTA+TGG | 0.391666 | 1_2:-55996805 | Msa0078460:CDS |
| TGCTATGTTCTTTCATCCTT+AGG | 0.394998 | 1_2:+55996923 | None:intergenic |
| GGTGGGGCAGATATCATTGC+AGG | 0.399765 | 1_2:-56001160 | Msa0078460:intron |
| GGATGTCAATAGGGTATATT+GGG | 0.402478 | 1_2:-55996576 | Msa0078460:CDS |
| TTCGATACGGTTTCGCTTGG+CGG | 0.407277 | 1_2:+56001870 | None:intergenic |
| GCCAGCGCACGACACGAATT+CGG | 0.408975 | 1_2:-56001772 | Msa0078460:CDS |
| CGAATATACCGGAGTTATGT+AGG | 0.411012 | 1_2:-56001300 | Msa0078460:CDS |
| CACAACAAAGACTATGGTTA+TGG | 0.412875 | 1_2:-55996799 | Msa0078460:CDS |
| GCCGAATTCGTGTCGTGCGC+TGG | 0.420373 | 1_2:+56001771 | None:intergenic |
| GGTCTTGTGAGGATGTCAAT+AGG | 0.421102 | 1_2:-55996586 | Msa0078460:CDS |
| ATAGCATTATGGCCCCTTGA+TGG | 0.423851 | 1_2:+55997007 | None:intergenic |
| CGCTGGCTAGTGAGGTGGCT+GGG | 0.428885 | 1_2:+56001788 | None:intergenic |
| AATAGGGTATATTGGGACTT+TGG | 0.430260 | 1_2:-55996569 | Msa0078460:CDS |
| TGAGATTTCCGATATTGAAA+TGG | 0.430871 | 1_2:-56001398 | Msa0078460:CDS |
| GCTTGGCGGTTGCGGTGGCG+GGG | 0.437853 | 1_2:+56001884 | None:intergenic |
| ATCAGTCTCAAACCCAACTT+TGG | 0.460423 | 1_2:-56001329 | Msa0078460:CDS |
| TGAGTTGAATTCTGAGGAAA+AGG | 0.465292 | 1_2:-55996629 | Msa0078460:CDS |
| TATTCGCCACCGCCAAAGTT+GGG | 0.471143 | 1_2:+56001317 | None:intergenic |
| TTAAATAAAGCTTGATCAGA+TGG | 0.471474 | 1_2:-55996340 | Msa0078460:three_prime_UTR |
| GCGCTGGCTAGTGAGGTGGC+TGG | 0.471615 | 1_2:+56001787 | None:intergenic |
| TACTATGTATCTAGCAAGAA+AGG | 0.476158 | 1_2:+56002009 | None:intergenic |
| GTCTTCGATACGGTTTCGCT+TGG | 0.476584 | 1_2:+56001867 | None:intergenic |
| GTCTTGTGAGGATGTCAATA+GGG | 0.477443 | 1_2:-55996585 | Msa0078460:CDS |
| TGAAGCTACCACGTGTTCTC+CGG | 0.481599 | 1_2:+56001498 | None:intergenic |
| ACGGTTTCGCTTGGCGGTTG+CGG | 0.488763 | 1_2:+56001876 | None:intergenic |
| GAAAGGTGTGACGGTGGTGG+TGG | 0.489400 | 1_2:-56001266 | Msa0078460:CDS |
| TCTGAGGAAAAGGTCCTAGC+TGG | 0.497002 | 1_2:-55996619 | Msa0078460:CDS |
| ATCCTCCAACTCACCTCCAC+CGG | 0.506127 | 1_2:-56001517 | Msa0078460:CDS |
| ATATTCGCCACCGCCAAAGT+TGG | 0.507901 | 1_2:+56001316 | None:intergenic |
| TGTGGATGGTCTTCTAGGCC+AGG | 0.509408 | 1_2:+55996844 | None:intergenic |
| TTTGGCGGTGGCGAATATAC+CGG | 0.510375 | 1_2:-56001311 | Msa0078460:CDS |
| GTGATTTCGCCGGTGAAGCT+TGG | 0.515648 | 1_2:-56001223 | Msa0078460:CDS |
| TATTATCGAAGGGAAAACTA+AGG | 0.516287 | 1_2:-56001365 | Msa0078460:CDS |
| GAAATGGAATCAGCTTGAAA+AGG | 0.516409 | 1_2:-55996542 | Msa0078460:CDS |
| TCCATGATGGATCTCCATCA+AGG | 0.519030 | 1_2:-55997021 | Msa0078460:CDS |
| CTAGCAACTGCTACACAAAA+CGG | 0.521813 | 1_2:-56001823 | Msa0078460:CDS |
| GAATCCCTCACTTAGGCCTA+AGG | 0.525026 | 1_2:-55996939 | Msa0078460:CDS |
| GTTCTCCGGTGGAGGTGAGT+TGG | 0.527093 | 1_2:+56001512 | None:intergenic |
| CGACACGAATTCGGCGAACA+CGG | 0.527483 | 1_2:-56001763 | Msa0078460:CDS |
| CTCCGGTGGAGGTGAGTTGG+AGG | 0.531396 | 1_2:+56001515 | None:intergenic |
| GGAAATGGCGGACATGCCGC+TGG | 0.533437 | 1_2:+56001546 | None:intergenic |
| TCGGAAAGGTGTGACGGTGG+TGG | 0.537491 | 1_2:-56001269 | Msa0078460:CDS |
| TTTGGGTTTCGTCTTCGATA+CGG | 0.539866 | 1_2:+56001857 | None:intergenic |
| TTATGTTGTGTGTGATATGA+AGG | 0.543071 | 1_2:-55996390 | Msa0078460:three_prime_UTR |
| ACATCAGCACCAAGCTTCAC+CGG | 0.543561 | 1_2:+56001214 | None:intergenic |
| CTCAGTAACATTCACCGTCA+TGG | 0.545248 | 1_2:-56001716 | Msa0078460:CDS |
| TAATTAACAGGAGCAGTATG+TGG | 0.546525 | 1_2:-55997063 | Msa0078460:intron |
| GGACGGTAGGGTTGAAGTGA+CGG | 0.548416 | 1_2:+56001626 | None:intergenic |
| GTGGATGGTCTTCTAGGCCA+GGG | 0.553045 | 1_2:+55996845 | None:intergenic |
| CGTCTAATGGCCGCTCTCGA+AGG | 0.553215 | 1_2:-56001592 | Msa0078460:CDS |
| CTCAAACCCAACTTTGGCGG+TGG | 0.553955 | 1_2:-56001323 | Msa0078460:CDS |
| AGTCTCAAACCCAACTTTGG+CGG | 0.554666 | 1_2:-56001326 | Msa0078460:CDS |
| GATTTCAACAATTCATGATG+TGG | 0.554996 | 1_2:+55996826 | None:intergenic |
| TACTCCGATGGTGATTTCGC+CGG | 0.555011 | 1_2:-56001233 | Msa0078460:CDS |
| GGCTGAGGTTAAGGACGGTA+GGG | 0.556203 | 1_2:+56001614 | None:intergenic |
| CGGCTGAGGTTAAGGACGGT+AGG | 0.559706 | 1_2:+56001613 | None:intergenic |
| GTTGATGAAGCTATTATCGA+AGG | 0.560149 | 1_2:-56001376 | Msa0078460:CDS |
| CCATGATGGATCTCCATCAA+GGG | 0.561601 | 1_2:-55997020 | Msa0078460:CDS |
| ATCTCGAAGTACATCAGTGG+TGG | 0.562122 | 1_2:-56001178 | Msa0078460:CDS |
| TCAACAATTCATGATGTGGA+TGG | 0.562975 | 1_2:+55996830 | None:intergenic |
| GTTTCGCTTGGCGGTTGCGG+TGG | 0.564473 | 1_2:+56001879 | None:intergenic |
| GGAGGTGAGTTGGAGGATTG+CGG | 0.565483 | 1_2:+56001522 | None:intergenic |
| ACTCTCCGACGCATGTTCGC+CGG | 0.566934 | 1_2:-56001685 | Msa0078460:CDS |
| TGAGGTGGCTGGGTCGAAGA+CGG | 0.567736 | 1_2:+56001798 | None:intergenic |
| GCCGCTTACTGCACATCCAG+CGG | 0.567953 | 1_2:-56001562 | Msa0078460:CDS |
| GCCGCTGGATGTGCAGTAAG+CGG | 0.571507 | 1_2:+56001561 | None:intergenic |
| TCTCGAAGTACATCAGTGGT+GGG | 0.573052 | 1_2:-56001177 | Msa0078460:CDS |
| TAGACGAAGAAATCACGGTC+TGG | 0.573430 | 1_2:+56001652 | None:intergenic |
| CTTCGAGAGCGGCCATTAGA+CGG | 0.578957 | 1_2:+56001593 | None:intergenic |
| CCCTTGATGGAGATCCATCA+TGG | 0.579608 | 1_2:+55997020 | None:intergenic |
| TGGACTTCTTTGCATTGACA+TGG | 0.579725 | 1_2:-55996776 | Msa0078460:CDS |
| TACCACGTGTTCTCCGGTGG+AGG | 0.582415 | 1_2:+56001504 | None:intergenic |
| GAATATACCGGAGTTATGTA+GGG | 0.582685 | 1_2:-56001299 | Msa0078460:CDS |
| AACAAAGACTATGGTTATGG+TGG | 0.583091 | 1_2:-55996796 | Msa0078460:CDS |
| GTCAGCCATGGGTTTAGTGT+AGG | 0.583644 | 1_2:+56001933 | None:intergenic |
| ATTGACATCCTCACAAGACC+TGG | 0.585919 | 1_2:+55996589 | None:intergenic |
| TGTAGGGTGGCGCATCGGAA+AGG | 0.590254 | 1_2:-56001283 | Msa0078460:CDS |
| TCAGAAAGAATCCCTCACTT+AGG | 0.590587 | 1_2:-55996946 | Msa0078460:CDS |
| GGCGCATCGGAAAGGTGTGA+CGG | 0.593531 | 1_2:-56001275 | Msa0078460:CDS |
| GTCCTAGCTGGAATATCACC+AGG | 0.594048 | 1_2:-55996607 | Msa0078460:CDS |
| CATAAGGAAAGTGTCAGCCA+TGG | 0.596216 | 1_2:+56001921 | None:intergenic |
| GGATTCAAGGTAATCTACCC+TGG | 0.598316 | 1_2:-55996862 | Msa0078460:CDS |
| AGCTACCACGTGTTCTCCGG+TGG | 0.598359 | 1_2:+56001501 | None:intergenic |
| GAGAGTTTCTGGTTCCATGA+CGG | 0.598458 | 1_2:+56001702 | None:intergenic |
| GAGGATTGCGGCGGAAATGG+CGG | 0.601765 | 1_2:+56001534 | None:intergenic |
| ATAAGGAAAGTGTCAGCCAT+GGG | 0.602885 | 1_2:+56001922 | None:intergenic |
| TCGTGCGCTGGCTAGTGAGG+TGG | 0.602922 | 1_2:+56001783 | None:intergenic |
| ATGGGTTTAGTGTAGGAAAG+TGG | 0.605599 | 1_2:+56001940 | None:intergenic |
| GTTGTTATGTTGCATGTACG+TGG | 0.609929 | 1_2:+56001430 | None:intergenic |
| TCATCCTTAGGCCTAAGTGA+GGG | 0.616919 | 1_2:+55996935 | None:intergenic |
| GATCCATCATGGAATTCACT+AGG | 0.617884 | 1_2:+55997031 | None:intergenic |
| GTAGCTTCAAGAACACTCTA+CGG | 0.618404 | 1_2:-56001484 | Msa0078460:CDS |
| TGTGATATGAAGGACATTGA+AGG | 0.618625 | 1_2:-55996380 | Msa0078460:three_prime_UTR |
| CACCTCCACCGGAGAACACG+TGG | 0.620711 | 1_2:-56001506 | Msa0078460:CDS |
| GAGCGGCCATTAGACGGCTG+AGG | 0.624779 | 1_2:+56001599 | None:intergenic |
| GATCAAGCTTTATTTAAACA+AGG | 0.628746 | 1_2:+55996346 | None:intergenic |
| TTCATCCTTAGGCCTAAGTG+AGG | 0.628773 | 1_2:+55996934 | None:intergenic |
| AGTTATGTAGGGTGGCGCAT+CGG | 0.629436 | 1_2:-56001288 | Msa0078460:CDS |
| GAATATCACCAGGTCTTGTG+AGG | 0.630132 | 1_2:-55996597 | Msa0078460:CDS |
| ATCGGAAATCTCAACGAACG+TGG | 0.632380 | 1_2:+56001408 | None:intergenic |
| CTCGAAGTACATCAGTGGTG+GGG | 0.633280 | 1_2:-56001176 | Msa0078460:CDS |
| ACTTTCCTACACTAAACCCA+TGG | 0.633686 | 1_2:-56001938 | Msa0078460:exon |
| ACTCTCCGGCGAACATGCGT+CGG | 0.635084 | 1_2:+56001680 | None:intergenic |
| GGCTGTAGACGAAGAAATCA+CGG | 0.636097 | 1_2:+56001647 | None:intergenic |
| ACGGTCTGGACCTAACTCTC+CGG | 0.637564 | 1_2:+56001666 | None:intergenic |
| GTGTCGTGCGCTGGCTAGTG+AGG | 0.640001 | 1_2:+56001780 | None:intergenic |
| ATGACGGTGAATGTTACTGA+GGG | 0.640177 | 1_2:+56001718 | None:intergenic |
| AATTAACAGGAGCAGTATGT+GGG | 0.640948 | 1_2:-55997062 | Msa0078460:intron |
| TTGATGAAGCTATTATCGAA+GGG | 0.644569 | 1_2:-56001375 | Msa0078460:CDS |
| TAGTAGTGAGTTGAATTCTG+AGG | 0.646330 | 1_2:-55996635 | Msa0078460:CDS |
| CATGACGGTGAATGTTACTG+AGG | 0.648377 | 1_2:+56001717 | None:intergenic |
| GGCTTCTGTACCTTCGAGAG+CGG | 0.650176 | 1_2:+56001582 | None:intergenic |
| CATGATGGATCTCCATCAAG+GGG | 0.650390 | 1_2:-55997019 | Msa0078460:CDS |
| AAGCCTAGTGAATTCCATGA+TGG | 0.650789 | 1_2:-55997034 | Msa0078460:CDS |
| TGCGCCACCCTACATAACTC+CGG | 0.657885 | 1_2:+56001292 | None:intergenic |
| TTCACCGGCGAAATCACCAT+CGG | 0.669207 | 1_2:+56001229 | None:intergenic |
| TGGTGATTAGTATCACAAAG+TGG | 0.671303 | 1_2:+56001960 | None:intergenic |
| GTGATATGAAGGACATTGAA+GGG | 0.675849 | 1_2:-55996379 | Msa0078460:three_prime_UTR |
| TAGACGGCTGAGGTTAAGGA+CGG | 0.676675 | 1_2:+56001609 | None:intergenic |
| GCATCGGAAAGGTGTGACGG+TGG | 0.682253 | 1_2:-56001272 | Msa0078460:CDS |
| AGTATCTCGAAGTACATCAG+TGG | 0.684643 | 1_2:-56001181 | Msa0078460:CDS |
| TATACCGGAGTTATGTAGGG+TGG | 0.687231 | 1_2:-56001296 | Msa0078460:CDS |
| GCTTCAAGAACACTCTACGG+TGG | 0.691366 | 1_2:-56001481 | Msa0078460:CDS |
| GGTGAGTTGGAGGATTGCGG+CGG | 0.695048 | 1_2:+56001525 | None:intergenic |
| GACCTGGTGATATTCCAGCT+AGG | 0.704773 | 1_2:+55996605 | None:intergenic |
| CACGAATTCGGCGAACACGG+CGG | 0.723929 | 1_2:-56001760 | Msa0078460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATGTGATTTTAATTA+AGG | - | chr1_2:55998030-55998049 | Msa0078460:intron | 10.0% |
| !!! | GTAAAGATTAAAAATTTTAT+AGG | + | chr1_2:55999373-55999392 | None:intergenic | 10.0% |
| !!! | AAATTTTTAATCTTTACTTT+TGG | - | chr1_2:55999376-55999395 | Msa0078460:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr1_2:55999456-55999475 | None:intergenic | 10.0% |
| !!! | TCTGTTTTTTATTTTTTTTT+CGG | + | chr1_2:56000206-56000225 | None:intergenic | 10.0% |
| !! | TAACAAAAAAAATAAAAAAC+AGG | + | chr1_2:56000403-56000422 | None:intergenic | 10.0% |
| !!! | ACTATTTTTTTAAACTCATT+AGG | - | chr1_2:55997488-55997507 | Msa0078460:intron | 15.0% |
| !!! | TTTGTCAACATATTTTTAAA+TGG | - | chr1_2:55997588-55997607 | Msa0078460:intron | 15.0% |
| !!! | ATAAGTTTTTTTTTTGTTTG+AGG | - | chr1_2:55997636-55997655 | Msa0078460:intron | 15.0% |
| !! | CAAATTTAACTATTAAAACA+TGG | - | chr1_2:55997787-55997806 | Msa0078460:intron | 15.0% |
| !!! | AAAATTTGTTATGAGAAAAT+TGG | + | chr1_2:55997836-55997855 | None:intergenic | 15.0% |
| !!! | ATAAGATGTTTGATTTTAAT+TGG | - | chr1_2:55998171-55998190 | Msa0078460:intron | 15.0% |
| !!! | TGTATATTTTAAAAGAAATG+AGG | - | chr1_2:55998465-55998484 | Msa0078460:intron | 15.0% |
| !!! | AATATTACACATTTTTTCAA+AGG | - | chr1_2:55998911-55998930 | Msa0078460:intron | 15.0% |
| !! | ATATATATATATGACTGTAT+AGG | + | chr1_2:55999025-55999044 | None:intergenic | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | + | chr1_2:55999312-55999331 | None:intergenic | 15.0% |
| !!! | TATGAATTTACTTTAAAAGA+GGG | + | chr1_2:55999403-55999422 | None:intergenic | 15.0% |
| !!! | ATATGAATTTACTTTAAAAG+AGG | + | chr1_2:55999404-55999423 | None:intergenic | 15.0% |
| !!! | AAAAAATGCTGAATTTTTTT+TGG | + | chr1_2:55999488-55999507 | None:intergenic | 15.0% |
| !!! | GTAGTGATTAAAAATTTTAT+AGG | - | chr1_2:55999684-55999703 | Msa0078460:intron | 15.0% |
| !! | AATAGAAAATTAAGATAAGT+TGG | + | chr1_2:56000683-56000702 | None:intergenic | 15.0% |
| !!! | AACATGTGTCATATTTTTAT+TGG | + | chr1_2:55997998-55998017 | None:intergenic | 20.0% |
| !!! | TGTGATTTTAATTAAGGAAA+TGG | - | chr1_2:55998036-55998055 | Msa0078460:intron | 20.0% |
| !!! | ATGTTTGATTTTAATTGGTT+GGG | - | chr1_2:55998176-55998195 | Msa0078460:intron | 20.0% |
| !! | TCCAATGAAAAATTATTGAT+TGG | - | chr1_2:55998257-55998276 | Msa0078460:intron | 20.0% |
| !!! | ACCAATCAATAATTTTTCAT+TGG | + | chr1_2:55998261-55998280 | None:intergenic | 20.0% |
| !! | CACAATGATGTTAATTTATT+AGG | + | chr1_2:55998582-55998601 | None:intergenic | 20.0% |
| !! | TAGTATGATATGATATACAA+GGG | + | chr1_2:55998738-55998757 | None:intergenic | 20.0% |
| !! | ATAGTATGATATGATATACA+AGG | + | chr1_2:55998739-55998758 | None:intergenic | 20.0% |
| !!! | AGATATCTTTTTTTTTGTAG+TGG | + | chr1_2:55999140-55999159 | None:intergenic | 20.0% |
| !!! | GAAAGAGTTAAATATGTTTT+TGG | - | chr1_2:55999285-55999304 | Msa0078460:intron | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | + | chr1_2:55999313-55999332 | None:intergenic | 20.0% |
| !!! | ATTTTATAGGAACTAAAAGT+CGG | - | chr1_2:55999697-55999716 | Msa0078460:intron | 20.0% |
| !! | TGAAAAGTTGACATATTTAT+AGG | - | chr1_2:55999744-55999763 | Msa0078460:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr1_2:55999745-55999764 | Msa0078460:intron | 20.0% |
| !! | TTACATCATGATTTCAAATT+CGG | + | chr1_2:55999803-55999822 | None:intergenic | 20.0% |
| !!! | ACTTTATGAATTTGATGATT+AGG | - | chr1_2:55999922-55999941 | Msa0078460:intron | 20.0% |
| !!! | ACTTTATGAATTTGATGATT+AGG | - | chr1_2:55999922-55999941 | Msa0078460:intron | 20.0% |
| !!! | CATCCTTTATTATTTCTATT+CGG | + | chr1_2:56000121-56000140 | None:intergenic | 20.0% |
| !!! | ATAATAAAGGATGTTACTTT+AGG | - | chr1_2:56000128-56000147 | Msa0078460:intron | 20.0% |
| !!! | TAATAAAGGATGTTACTTTA+GGG | - | chr1_2:56000129-56000148 | Msa0078460:intron | 20.0% |
| !! | AAATTAAGCTACAATCTTAT+TGG | - | chr1_2:56000930-56000949 | Msa0078460:intron | 20.0% |
| !!! | TTGTTTTTAACTACAACTTA+TGG | - | chr1_2:56000978-56000997 | Msa0078460:intron | 20.0% |
| !!! | TTTCTTTCTAGAAGTTAAAA+TGG | + | chr1_2:56001157-56001176 | None:intergenic | 20.0% |
| !!! | TTGACTATGATTTTTTCTTT+TGG | - | chr1_2:56001234-56001253 | Msa0078460:CDS | 20.0% |
| !!! | GGTTTAAATTGATAATTAAC+AGG | - | chr1_2:56001258-56001277 | Msa0078460:CDS | 20.0% |
| !! | ACTAAAAAAATTAGGATTCA+AGG | - | chr1_2:56001458-56001477 | Msa0078460:CDS | 20.0% |
| !! | AAGTGATTCAATTCTTATTA+GGG | + | chr1_2:56001845-56001864 | None:intergenic | 20.0% |
| !! | AAAGTGATTCAATTCTTATT+AGG | + | chr1_2:56001846-56001865 | None:intergenic | 20.0% |
| !!! | TTGAATCACTTTTTAAATCA+TGG | - | chr1_2:56001854-56001873 | Msa0078460:CDS | 20.0% |
| !!! | TGAATCACTTTTTAAATCAT+GGG | - | chr1_2:56001855-56001874 | Msa0078460:CDS | 20.0% |
| !!! | TCTAGTTGTTTTGAATTGAT+TGG | + | chr1_2:55996304-55996323 | None:intergenic | 25.0% |
| !!! | TGCTAGTTTCTTTTTTGTTT+GGG | + | chr1_2:55996496-55996515 | None:intergenic | 25.0% |
| !!! | TTGCTAGTTTCTTTTTTGTT+TGG | + | chr1_2:55996497-55996516 | None:intergenic | 25.0% |
| ! | TTCATCAACCATTTCAATAT+CGG | + | chr1_2:55996946-55996965 | None:intergenic | 25.0% |
| ! | CAAATTTAACTATCCAAACA+TGG | - | chr1_2:55997732-55997751 | Msa0078460:intron | 25.0% |
| ! | TTGGTATTCGTCAAATAAAA+AGG | + | chr1_2:55997885-55997904 | None:intergenic | 25.0% |
| ! | AGTTTGTGCAATGAAAAAAT+TGG | - | chr1_2:55997866-55997885 | Msa0078460:intron | 25.0% |
| ! | GTCAAATAAAAAAGTAGACA+TGG | - | chr1_2:55997894-55997913 | Msa0078460:intron | 25.0% |
| !!! | GTGTCATATTTTTATTGGTT+GGG | + | chr1_2:55997993-55998012 | None:intergenic | 25.0% |
| !!! | TGTGTCATATTTTTATTGGT+TGG | + | chr1_2:55997994-55998013 | None:intergenic | 25.0% |
| ! | TAAGGAAATGGAAACATAAA+TGG | - | chr1_2:55998048-55998067 | Msa0078460:intron | 25.0% |
| !!! | TTTTTGTTGGTTAAAGAAAG+TGG | - | chr1_2:55998081-55998100 | Msa0078460:intron | 25.0% |
| !!! | GATGTTTGATTTTAATTGGT+TGG | - | chr1_2:55998175-55998194 | Msa0078460:intron | 25.0% |
| ! | AAATTAACATCATTGTGTTG+TGG | - | chr1_2:55998585-55998604 | Msa0078460:intron | 25.0% |
| ! | GTCTATCTAGAGAAAATAAT+TGG | - | chr1_2:55998690-55998709 | Msa0078460:intron | 25.0% |
| ! | GAAAATAATTGGATTGAGAT+TGG | - | chr1_2:55998701-55998720 | Msa0078460:intron | 25.0% |
| ! | TAATATTCAGAAACTAAGGT+GGG | + | chr1_2:55998898-55998917 | None:intergenic | 25.0% |
| ! | TGTGTAATATTCAGAAACTA+AGG | + | chr1_2:55998902-55998921 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTTTGTAGTGGTT+GGG | + | chr1_2:55999135-55999154 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTTTTGTAGTGGT+TGG | + | chr1_2:55999136-55999155 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr1_2:55999343-55999362 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr1_2:55999344-55999363 | None:intergenic | 25.0% |
| !! | TGAATTTGATGATTAGGATT+AGG | - | chr1_2:55999928-55999947 | Msa0078460:intron | 25.0% |
| !! | TGAATTTGATGATTAGGATT+AGG | - | chr1_2:55999928-55999947 | Msa0078460:intron | 25.0% |
| ! | CTTCCGAATAGAAATAATAA+AGG | - | chr1_2:56000115-56000134 | Msa0078460:intron | 25.0% |
| !!! | AATAAAGGATGTTACTTTAG+GGG | - | chr1_2:56000130-56000149 | Msa0078460:intron | 25.0% |
| ! | CATGAGATTCAAATTCAATT+TGG | + | chr1_2:56000629-56000648 | None:intergenic | 25.0% |
| !!! | TTTTTAACTACAACTTATGG+TGG | - | chr1_2:56000981-56001000 | Msa0078460:intron | 25.0% |
| !!! | TGTCTTCTTACTTTTTCTTT+TGG | - | chr1_2:56001044-56001063 | Msa0078460:intron | 25.0% |
| !!! | ATATGTGTTGTATTTTGACA+AGG | - | chr1_2:56001207-56001226 | Msa0078460:CDS | 25.0% |
| !!! | ACTATGATTTTTTCTTTTGG+TGG | - | chr1_2:56001237-56001256 | Msa0078460:CDS | 25.0% |
| !!! | ATAGTTCAAATGCTATTTTG+GGG | + | chr1_2:56001368-56001387 | None:intergenic | 25.0% |
| !!! | GATAGTTCAAATGCTATTTT+GGG | + | chr1_2:56001369-56001388 | None:intergenic | 25.0% |
| !!! | TGATAGTTCAAATGCTATTT+TGG | + | chr1_2:56001370-56001389 | None:intergenic | 25.0% |
| ! | GCAACAAGACTAAAAAAATT+AGG | - | chr1_2:56001450-56001469 | Msa0078460:CDS | 25.0% |
| !!! | GATCAAGCTTTATTTAAACA+AGG | + | chr1_2:56001990-56002009 | None:intergenic | 25.0% |
| ! | TTAAATAAAGCTTGATCAGA+TGG | - | chr1_2:56001993-56002012 | Msa0078460:five_prime_UTR | 25.0% |
| TACTATGTATCTAGCAAGAA+AGG | + | chr1_2:55996327-55996346 | None:intergenic | 30.0% | |
| TGAGATTTCCGATATTGAAA+TGG | - | chr1_2:55996935-55996954 | Msa0078460:CDS | 30.0% | |
| TTGATGAAGCTATTATCGAA+GGG | - | chr1_2:55996958-55996977 | Msa0078460:CDS | 30.0% | |
| TATTATCGAAGGGAAAACTA+AGG | - | chr1_2:55996968-55996987 | Msa0078460:CDS | 30.0% | |
| ! | ATGCATTTTATGCCAAATCT+AGG | - | chr1_2:55997695-55997714 | Msa0078460:intron | 30.0% |
| ! | TGCATTTTATGCCAAATCTA+GGG | - | chr1_2:55997696-55997715 | Msa0078460:intron | 30.0% |
| !! | ATGAAAAGCATTACCATGTT+TGG | + | chr1_2:55997748-55997767 | None:intergenic | 30.0% |
| AATGGAAACATAAATGGTGA+TGG | - | chr1_2:55998054-55998073 | Msa0078460:intron | 30.0% | |
| ATGGAAACATAAATGGTGAT+GGG | - | chr1_2:55998055-55998074 | Msa0078460:intron | 30.0% | |
| ! | ATTTTCTCTAGATAGACTCA+AGG | + | chr1_2:55998687-55998706 | None:intergenic | 30.0% |
| AATATTCAGAAACTAAGGTG+GGG | + | chr1_2:55998897-55998916 | None:intergenic | 30.0% | |
| GTAATATTCAGAAACTAAGG+TGG | + | chr1_2:55998899-55998918 | None:intergenic | 30.0% | |
| AGGAAAATACATTCCAAGTA+TGG | - | chr1_2:55998931-55998950 | Msa0078460:intron | 30.0% | |
| GGAAAATACATTCCAAGTAT+GGG | - | chr1_2:55998932-55998951 | Msa0078460:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr1_2:55999095-55999114 | Msa0078460:intron | 30.0% | |
| TGCATAAAATATGCAAGGTT+CGG | - | chr1_2:55999100-55999119 | Msa0078460:intron | 30.0% | |
| !!! | CTTTTTTTTTGTAGTGGTTG+GGG | + | chr1_2:55999134-55999153 | None:intergenic | 30.0% |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr1_2:55999357-55999376 | None:intergenic | 30.0% | |
| ! | AAATTCGGATGGTTTCTTTT+AGG | + | chr1_2:55999788-55999807 | None:intergenic | 30.0% |
| ATCATGATTTCAAATTCGGA+TGG | + | chr1_2:55999799-55999818 | None:intergenic | 30.0% | |
| CATGATGTAATGTATGTATG+TGG | - | chr1_2:55999813-55999832 | Msa0078460:intron | 30.0% | |
| TGTTGCAAGTAAAAGGAAAT+GGG | + | chr1_2:55999891-55999910 | None:intergenic | 30.0% | |
| GATGATTAGGATTAGGATTA+AGG | - | chr1_2:55999992-56000011 | Msa0078460:intron | 30.0% | |
| ATTCACATATATTGTGGTCA+TGG | + | chr1_2:56000249-56000268 | None:intergenic | 30.0% | |
| AGGGAAAAATAAATGGGAAA+TGG | + | chr1_2:56000327-56000346 | None:intergenic | 30.0% | |
| TTCGTGAGGGAAAAATAAAT+GGG | + | chr1_2:56000333-56000352 | None:intergenic | 30.0% | |
| ATTCGTGAGGGAAAAATAAA+TGG | + | chr1_2:56000334-56000353 | None:intergenic | 30.0% | |
| ATCCATTGCTCATTTCTATT+CGG | + | chr1_2:56000518-56000537 | None:intergenic | 30.0% | |
| GTATGTTATGTTACTCAAGT+TGG | - | chr1_2:56000570-56000589 | Msa0078460:intron | 30.0% | |
| TTAAGCTACAATCTTATTGG+TGG | - | chr1_2:56000933-56000952 | Msa0078460:intron | 30.0% | |
| TTGTTGCAAAAACTAATGCA+CGG | + | chr1_2:56001437-56001456 | None:intergenic | 30.0% | |
| GATTTCAACAATTCATGATG+TGG | + | chr1_2:56001510-56001529 | None:intergenic | 30.0% | |
| TCAATTCACAACAAAGACTA+TGG | - | chr1_2:56001528-56001547 | Msa0078460:CDS | 30.0% | |
| ATGAGCTATTTGCAAAACTA+TGG | - | chr1_2:56001606-56001625 | Msa0078460:CDS | 30.0% | |
| TTGCAAAACTATGGACAATT+TGG | - | chr1_2:56001615-56001634 | Msa0078460:CDS | 30.0% | |
| GTATCTAGACTTCAAGAATA+TGG | - | chr1_2:56001816-56001835 | Msa0078460:CDS | 30.0% | |
| TTATGTTGTGTGTGATATGA+AGG | - | chr1_2:56001943-56001962 | Msa0078460:five_prime_UTR | 30.0% | |
| TGGTGATTAGTATCACAAAG+TGG | + | chr1_2:55996376-55996395 | None:intergenic | 35.0% | |
| ! | GTTGATGAAGCTATTATCGA+AGG | - | chr1_2:55996957-55996976 | Msa0078460:CDS | 35.0% |
| GAATATACCGGAGTTATGTA+GGG | - | chr1_2:55997034-55997053 | Msa0078460:CDS | 35.0% | |
| ! | GGATAATACTTTTACTCCGA+TGG | - | chr1_2:55997088-55997107 | Msa0078460:intron | 35.0% |
| ATGTGTTATAGCCCTAGATT+TGG | + | chr1_2:55997710-55997729 | None:intergenic | 35.0% | |
| ! | AGCTTGTGTTTTCAACCTTA+AGG | - | chr1_2:55998380-55998399 | Msa0078460:intron | 35.0% |
| ! | GTCTGGAATCAAATACCTTA+AGG | + | chr1_2:55998398-55998417 | None:intergenic | 35.0% |
| ! | AAGGTATTTGATTCCAGACT+TGG | - | chr1_2:55998399-55998418 | Msa0078460:intron | 35.0% |
| AGGTATTTGATTCCAGACTT+GGG | - | chr1_2:55998400-55998419 | Msa0078460:intron | 35.0% | |
| GCTACTTAGCATATAGTAAG+TGG | - | chr1_2:55998547-55998566 | Msa0078460:intron | 35.0% | |
| TTCAACTCACTCCAATGATA+TGG | + | chr1_2:55998827-55998846 | None:intergenic | 35.0% | |
| ATATTCAGAAACTAAGGTGG+GGG | + | chr1_2:55998896-55998915 | None:intergenic | 35.0% | |
| GCATAAAATATGCAAGGTTC+GGG | - | chr1_2:55999101-55999120 | Msa0078460:intron | 35.0% | |
| CATAAAATATGCAAGGTTCG+GGG | - | chr1_2:55999102-55999121 | Msa0078460:intron | 35.0% | |
| TTATAGGAACTAAAAGTCGG+AGG | - | chr1_2:55999700-55999719 | Msa0078460:intron | 35.0% | |
| GAAAAACAACGATTGTTCAC+GGG | + | chr1_2:55999862-55999881 | None:intergenic | 35.0% | |
| CGAAAAACAACGATTGTTCA+CGG | + | chr1_2:55999863-55999882 | None:intergenic | 35.0% | |
| GTGTTGCAAGTAAAAGGAAA+TGG | + | chr1_2:55999892-55999911 | None:intergenic | 35.0% | |
| TAACACGTGTTGCAAGTAAA+AGG | + | chr1_2:55999898-55999917 | None:intergenic | 35.0% | |
| !!! | TTTCCCGGGACAATTTTTTT+CGG | + | chr1_2:56000171-56000190 | None:intergenic | 35.0% |
| AGACCCCATTTATTATCAGT+GGG | - | chr1_2:56000223-56000242 | Msa0078460:intron | 35.0% | |
| ATGGCCCACTGATAATAAAT+GGG | + | chr1_2:56000230-56000249 | None:intergenic | 35.0% | |
| GGCTGAATTCACATATATTG+TGG | + | chr1_2:56000255-56000274 | None:intergenic | 35.0% | |
| ATGTGAATTCAGCCACTAAA+TGG | - | chr1_2:56000261-56000280 | Msa0078460:intron | 35.0% | |
| TGTGAATTCAGCCACTAAAT+GGG | - | chr1_2:56000262-56000281 | Msa0078460:intron | 35.0% | |
| TGGGAATTCAGCTACTAAAT+GGG | + | chr1_2:56000368-56000387 | None:intergenic | 35.0% | |
| ATGGGAATTCAGCTACTAAA+TGG | + | chr1_2:56000369-56000388 | None:intergenic | 35.0% | |
| AGCTGAATTCCCATGTATTA+TGG | - | chr1_2:56000375-56000394 | Msa0078460:intron | 35.0% | |
| AAACAGGCTCCATAATACAT+GGG | + | chr1_2:56000387-56000406 | None:intergenic | 35.0% | |
| AAAACAGGCTCCATAATACA+TGG | + | chr1_2:56000388-56000407 | None:intergenic | 35.0% | |
| ! | AAAATTGTCCCGAGCTTTTA+CGG | + | chr1_2:56000442-56000461 | None:intergenic | 35.0% |
| !!! | AAAGCTCGGGACAATTTTTT+TGG | - | chr1_2:56000444-56000463 | Msa0078460:intron | 35.0% |
| !!! | AAGCTCGGGACAATTTTTTT+GGG | - | chr1_2:56000445-56000464 | Msa0078460:intron | 35.0% |
| TTCCGAATAGAAATGAGCAA+TGG | - | chr1_2:56000513-56000532 | Msa0078460:intron | 35.0% | |
| GACACAGTTGTTAACCAAAT+GGG | + | chr1_2:56000842-56000861 | None:intergenic | 35.0% | |
| TGACACAGTTGTTAACCAAA+TGG | + | chr1_2:56000843-56000862 | None:intergenic | 35.0% | |
| ! | TAACAACTGTGTCATTGATC+TGG | - | chr1_2:56000849-56000868 | Msa0078460:intron | 35.0% |
| ! | ACAAGAAGTGTGGAAAATTC+AGG | + | chr1_2:56001102-56001121 | None:intergenic | 35.0% |
| CTTCTTGTGCTGAAAATGAA+AGG | - | chr1_2:56001114-56001133 | Msa0078460:intron | 35.0% | |
| TAATTAACAGGAGCAGTATG+TGG | - | chr1_2:56001270-56001289 | Msa0078460:CDS | 35.0% | |
| AATTAACAGGAGCAGTATGT+GGG | - | chr1_2:56001271-56001290 | Msa0078460:CDS | 35.0% | |
| TGTTGGTCCTAATAGCATTA+TGG | + | chr1_2:56001340-56001359 | None:intergenic | 35.0% | |
| TGCTATGTTCTTTCATCCTT+AGG | + | chr1_2:56001413-56001432 | None:intergenic | 35.0% | |
| TCAACAATTCATGATGTGGA+TGG | + | chr1_2:56001506-56001525 | None:intergenic | 35.0% | |
| CACAACAAAGACTATGGTTA+TGG | - | chr1_2:56001534-56001553 | Msa0078460:CDS | 35.0% | |
| AACAAAGACTATGGTTATGG+TGG | - | chr1_2:56001537-56001556 | Msa0078460:CDS | 35.0% | |
| ! | CTATGGACAATTTGGTTTCA+TGG | - | chr1_2:56001623-56001642 | Msa0078460:CDS | 35.0% |
| ! | TAGTAGTGAGTTGAATTCTG+AGG | - | chr1_2:56001698-56001717 | Msa0078460:CDS | 35.0% |
| ! | TGAGTTGAATTCTGAGGAAA+AGG | - | chr1_2:56001704-56001723 | Msa0078460:CDS | 35.0% |
| AGGATGTCAATAGGGTATAT+TGG | - | chr1_2:56001756-56001775 | Msa0078460:CDS | 35.0% | |
| GGATGTCAATAGGGTATATT+GGG | - | chr1_2:56001757-56001776 | Msa0078460:CDS | 35.0% | |
| AATAGGGTATATTGGGACTT+TGG | - | chr1_2:56001764-56001783 | Msa0078460:CDS | 35.0% | |
| GAAATGGAATCAGCTTGAAA+AGG | - | chr1_2:56001791-56001810 | Msa0078460:CDS | 35.0% | |
| TGTGATATGAAGGACATTGA+AGG | - | chr1_2:56001953-56001972 | Msa0078460:five_prime_UTR | 35.0% | |
| GTGATATGAAGGACATTGAA+GGG | - | chr1_2:56001954-56001973 | Msa0078460:five_prime_UTR | 35.0% | |
| ATGGGTTTAGTGTAGGAAAG+TGG | + | chr1_2:55996396-55996415 | None:intergenic | 40.0% | |
| ACTTTCCTACACTAAACCCA+TGG | - | chr1_2:55996395-55996414 | Msa0078460:three_prime_UTR | 40.0% | |
| !! | ATAAGGAAAGTGTCAGCCAT+GGG | + | chr1_2:55996414-55996433 | None:intergenic | 40.0% |
| ! | TTTGGGTTTCGTCTTCGATA+CGG | + | chr1_2:55996479-55996498 | None:intergenic | 40.0% |
| CTAGCAACTGCTACACAAAA+CGG | - | chr1_2:55996510-55996529 | Msa0078460:CDS | 40.0% | |
| ATGACGGTGAATGTTACTGA+GGG | + | chr1_2:55996618-55996637 | None:intergenic | 40.0% | |
| GTAGCTTCAAGAACACTCTA+CGG | - | chr1_2:55996849-55996868 | Msa0078460:CDS | 40.0% | |
| GTTGTTATGTTGCATGTACG+TGG | + | chr1_2:55996906-55996925 | None:intergenic | 40.0% | |
| ATCAGTCTCAAACCCAACTT+TGG | - | chr1_2:55997004-55997023 | Msa0078460:CDS | 40.0% | |
| CGAATATACCGGAGTTATGT+AGG | - | chr1_2:55997033-55997052 | Msa0078460:CDS | 40.0% | |
| AGTATCTCGAAGTACATCAG+TGG | - | chr1_2:55997152-55997171 | Msa0078460:intron | 40.0% | |
| !! | GAAACATAAATGGTGATGGG+TGG | - | chr1_2:55998058-55998077 | Msa0078460:intron | 40.0% |
| GGGTGTAAGAATGATCTCTT+AGG | - | chr1_2:55998196-55998215 | Msa0078460:intron | 40.0% | |
| !! | TATGGTCTCATCGGTTCAAA+GGG | + | chr1_2:55998652-55998671 | None:intergenic | 40.0% |
| TTCGTCATCTATGGTCTCAT+CGG | + | chr1_2:55998661-55998680 | None:intergenic | 40.0% | |
| TCAAGGAAGTTCGTCATCTA+TGG | + | chr1_2:55998670-55998689 | None:intergenic | 40.0% | |
| AATTGGATTGAGATTGGACG+TGG | - | chr1_2:55998707-55998726 | Msa0078460:intron | 40.0% | |
| ATTCCCATTAGTTCACCACT+TGG | - | chr1_2:55998789-55998808 | Msa0078460:intron | 40.0% | |
| TTCCCATTAGTTCACCACTT+GGG | - | chr1_2:55998790-55998809 | Msa0078460:intron | 40.0% | |
| TGACCATACCACCATATCAT+TGG | - | chr1_2:55998813-55998832 | Msa0078460:intron | 40.0% | |
| ACTCCAATGATATGGTGGTA+TGG | + | chr1_2:55998819-55998838 | None:intergenic | 40.0% | |
| AACTCACTCCAATGATATGG+TGG | + | chr1_2:55998824-55998843 | None:intergenic | 40.0% | |
| GGTTAGATGGGATAGTTGTT+TGG | + | chr1_2:55998853-55998872 | None:intergenic | 40.0% | |
| ! | TGGATGGATTCTGGTTAGAT+GGG | + | chr1_2:55998865-55998884 | None:intergenic | 40.0% |
| ! | GAATGAATGTGGATGGATTC+TGG | + | chr1_2:55998874-55998893 | None:intergenic | 40.0% |
| GCAAGTAAAAGGAAATGGGT+AGG | + | chr1_2:55999887-55999906 | None:intergenic | 40.0% | |
| TCTCCCGAAAAAAATTGTCC+CGG | - | chr1_2:56000164-56000183 | Msa0078460:intron | 40.0% | |
| !!! | TTCCCGGGACAATTTTTTTC+GGG | + | chr1_2:56000170-56000189 | None:intergenic | 40.0% |
| ! | GGTTATAGCTGAATTTTCCC+GGG | + | chr1_2:56000185-56000204 | None:intergenic | 40.0% |
| ! | CGGTTATAGCTGAATTTTCC+CGG | + | chr1_2:56000186-56000205 | None:intergenic | 40.0% |
| CAGACCCCATTTATTATCAG+TGG | - | chr1_2:56000222-56000241 | Msa0078460:intron | 40.0% | |
| TGGCCCACTGATAATAAATG+GGG | + | chr1_2:56000229-56000248 | None:intergenic | 40.0% | |
| CATGGCCCACTGATAATAAA+TGG | + | chr1_2:56000231-56000250 | None:intergenic | 40.0% | |
| GTTTCGCTGTTCATTTGTGA+GGG | - | chr1_2:56000284-56000303 | Msa0078460:intron | 40.0% | |
| TTTCGCTGTTCATTTGTGAG+GGG | - | chr1_2:56000285-56000304 | Msa0078460:intron | 40.0% | |
| !! | GTTTCGCTTTTCATTCGTGA+GGG | + | chr1_2:56000346-56000365 | None:intergenic | 40.0% |
| ! | ATTTTCCCACCGTAAAAGCT+CGG | - | chr1_2:56000430-56000449 | Msa0078460:intron | 40.0% |
| !!! | AGCTCGGGACAATTTTTTTG+GGG | - | chr1_2:56000446-56000465 | Msa0078460:intron | 40.0% |
| TGACGAATGGCTTCAAGTAT+GGG | + | chr1_2:56000088-56000107 | None:intergenic | 40.0% | |
| ATGACGAATGGCTTCAAGTA+TGG | + | chr1_2:56000089-56000108 | None:intergenic | 40.0% | |
| !! | GTTACTCAAGTTGGCAAAGT+TGG | - | chr1_2:56000579-56000598 | Msa0078460:intron | 40.0% |
| !!! | ACGCTACTTTTCAACCCATT+TGG | - | chr1_2:56000825-56000844 | Msa0078460:intron | 40.0% |
| !! | CTTAACCCGTTAGCTTGTTT+GGG | - | chr1_2:56001004-56001023 | Msa0078460:intron | 40.0% |
| TGATTCCCAAACAAGCTAAC+GGG | + | chr1_2:56001012-56001031 | None:intergenic | 40.0% | |
| GTGATTCCCAAACAAGCTAA+CGG | + | chr1_2:56001013-56001032 | None:intergenic | 40.0% | |
| ! | CATTTTCAGCACAAGAAGTG+TGG | + | chr1_2:56001112-56001131 | None:intergenic | 40.0% |
| AAGCCTAGTGAATTCCATGA+TGG | - | chr1_2:56001299-56001318 | Msa0078460:CDS | 40.0% | |
| GATCCATCATGGAATTCACT+AGG | + | chr1_2:56001305-56001324 | None:intergenic | 40.0% | |
| !!! | GCTATTTTGGGGTTCATTGT+TGG | + | chr1_2:56001357-56001376 | None:intergenic | 40.0% |
| TCAGAAAGAATCCCTCACTT+AGG | - | chr1_2:56001387-56001406 | Msa0078460:CDS | 40.0% | |
| ! | TGGACTTCTTTGCATTGACA+TGG | - | chr1_2:56001557-56001576 | Msa0078460:CDS | 40.0% |
| TGGTTTCATGGCTGTTAGTT+TGG | - | chr1_2:56001635-56001654 | Msa0078460:CDS | 40.0% | |
| ! | GGTTTCATGGCTGTTAGTTT+GGG | - | chr1_2:56001636-56001655 | Msa0078460:CDS | 40.0% |
| ! | GAGACACTTATGTCTTGTTC+TGG | - | chr1_2:56001666-56001685 | Msa0078460:CDS | 40.0% |
| GTCTTGTGAGGATGTCAATA+GGG | - | chr1_2:56001748-56001767 | Msa0078460:CDS | 40.0% | |
| !! | CATAAGGAAAGTGTCAGCCA+TGG | + | chr1_2:55996415-55996434 | None:intergenic | 45.0% |
| CATGACGGTGAATGTTACTG+AGG | + | chr1_2:55996619-55996638 | None:intergenic | 45.0% | |
| CTCAGTAACATTCACCGTCA+TGG | - | chr1_2:55996617-55996636 | Msa0078460:CDS | 45.0% | |
| !! | GAGAGTTTCTGGTTCCATGA+CGG | + | chr1_2:55996634-55996653 | None:intergenic | 45.0% |
| TAGACGAAGAAATCACGGTC+TGG | + | chr1_2:55996684-55996703 | None:intergenic | 45.0% | |
| GGCTGTAGACGAAGAAATCA+CGG | + | chr1_2:55996689-55996708 | None:intergenic | 45.0% | |
| ATCGGAAATCTCAACGAACG+TGG | + | chr1_2:55996928-55996947 | None:intergenic | 45.0% | |
| AGTCTCAAACCCAACTTTGG+CGG | - | chr1_2:55997007-55997026 | Msa0078460:CDS | 45.0% | |
| TATACCGGAGTTATGTAGGG+TGG | - | chr1_2:55997037-55997056 | Msa0078460:CDS | 45.0% | |
| ATCTCGAAGTACATCAGTGG+TGG | - | chr1_2:55997155-55997174 | Msa0078460:intron | 45.0% | |
| TCTCGAAGTACATCAGTGGT+GGG | - | chr1_2:55997156-55997175 | Msa0078460:intron | 45.0% | |
| !!! | TGGTGATGGGTGGTTTTTGT+TGG | - | chr1_2:55998068-55998087 | Msa0078460:intron | 45.0% |
| TTCTCTTAGATGCCCAAGTC+TGG | + | chr1_2:55998415-55998434 | None:intergenic | 45.0% | |
| !! | ATGGTCTCATCGGTTCAAAG+GGG | + | chr1_2:55998651-55998670 | None:intergenic | 45.0% |
| !! | CTATGGTCTCATCGGTTCAA+AGG | + | chr1_2:55998653-55998672 | None:intergenic | 45.0% |
| CACCCAAGTGGTGAACTAAT+GGG | + | chr1_2:55998795-55998814 | None:intergenic | 45.0% | |
| TCACCCAAGTGGTGAACTAA+TGG | + | chr1_2:55998796-55998815 | None:intergenic | 45.0% | |
| ! | GTGGATGGATTCTGGTTAGA+TGG | + | chr1_2:55998866-55998885 | None:intergenic | 45.0% |
| GTCGAATCTAGACCCATACT+TGG | + | chr1_2:55998947-55998966 | None:intergenic | 45.0% | |
| AACCAACTGAGCTAAGCTCA+CGG | + | chr1_2:55999073-55999092 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr1_2:55999073-55999092 | Msa0078460:intron | 45.0% | |
| CTCCCGAAAAAAATTGTCCC+GGG | - | chr1_2:56000165-56000184 | Msa0078460:intron | 45.0% | |
| GAACAGCGAAACCCATTTAG+TGG | + | chr1_2:56000276-56000295 | None:intergenic | 45.0% | |
| GGTTTCGCTGTTCATTTGTG+AGG | - | chr1_2:56000283-56000302 | Msa0078460:intron | 45.0% | |
| !! | GGTTTCGCTTTTCATTCGTG+AGG | + | chr1_2:56000347-56000366 | None:intergenic | 45.0% |
| ! | TTTTCCCACCGTAAAAGCTC+GGG | - | chr1_2:56000431-56000450 | Msa0078460:intron | 45.0% |
| GACGAATGGCTTCAAGTATG+GGG | + | chr1_2:56000484-56000503 | None:intergenic | 45.0% | |
| !! | GCTTAACCCGTTAGCTTGTT+TGG | - | chr1_2:56001003-56001022 | Msa0078460:intron | 45.0% |
| ! | AGCTTGTTTGGGAATCACTG+AGG | - | chr1_2:56001015-56001034 | Msa0078460:intron | 45.0% |
| !! | TCCATGATGGATCTCCATCA+AGG | - | chr1_2:56001312-56001331 | Msa0078460:CDS | 45.0% |
| !! | CCATGATGGATCTCCATCAA+GGG | - | chr1_2:56001313-56001332 | Msa0078460:CDS | 45.0% |
| !! | CATGATGGATCTCCATCAAG+GGG | - | chr1_2:56001314-56001333 | Msa0078460:CDS | 45.0% |
| ATAGCATTATGGCCCCTTGA+TGG | + | chr1_2:56001329-56001348 | None:intergenic | 45.0% | |
| CAAGGGGCCATAATGCTATT+AGG | - | chr1_2:56001330-56001349 | Msa0078460:CDS | 45.0% | |
| TCATCCTTAGGCCTAAGTGA+GGG | + | chr1_2:56001401-56001420 | None:intergenic | 45.0% | |
| TTCATCCTTAGGCCTAAGTG+AGG | + | chr1_2:56001402-56001421 | None:intergenic | 45.0% | |
| GGATTCAAGGTAATCTACCC+TGG | - | chr1_2:56001471-56001490 | Msa0078460:CDS | 45.0% | |
| CATGATGTGGATGGTCTTCT+AGG | + | chr1_2:56001497-56001516 | None:intergenic | 45.0% | |
| ! | GAATATCACCAGGTCTTGTG+AGG | - | chr1_2:56001736-56001755 | Msa0078460:CDS | 45.0% |
| ATTGACATCCTCACAAGACC+TGG | + | chr1_2:56001747-56001766 | None:intergenic | 45.0% | |
| ! | GGTCTTGTGAGGATGTCAAT+AGG | - | chr1_2:56001747-56001766 | Msa0078460:CDS | 45.0% |
| !! | TTGGGACTTTGGAGCAGAAA+TGG | - | chr1_2:56001775-56001794 | Msa0078460:CDS | 45.0% |
| !! | ATTTAATAATTTAGTATATA+CGG | + | chr1_2:55997374-55997393 | None:intergenic | 5.0% |
| !! | ATGATAATTTAATAATATTT+AGG | + | chr1_2:55998767-55998786 | None:intergenic | 5.0% |
| !!! | ATTTATTATTATACATTTTA+AGG | + | chr1_2:55999251-55999270 | None:intergenic | 5.0% |
| !!! | TAAAGATTAAAAATTTTATA+GGG | + | chr1_2:55999372-55999391 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | - | chr1_2:55999527-55999546 | Msa0078460:intron | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+AGG | - | chr1_2:55999580-55999599 | Msa0078460:intron | 5.0% |
| !!! | ACAAAAATTAAATTTAAAAT+AGG | - | chr1_2:55999653-55999672 | Msa0078460:intron | 5.0% |
| !!! | CAAAAATTAAATTTAAAATA+GGG | - | chr1_2:55999654-55999673 | Msa0078460:intron | 5.0% |
| GTCAGCCATGGGTTTAGTGT+AGG | + | chr1_2:55996403-55996422 | None:intergenic | 50.0% | |
| TTCGATACGGTTTCGCTTGG+CGG | + | chr1_2:55996466-55996485 | None:intergenic | 50.0% | |
| GTCTTCGATACGGTTTCGCT+TGG | + | chr1_2:55996469-55996488 | None:intergenic | 50.0% | |
| AACATGCGTCGGAGAGTTTC+TGG | + | chr1_2:55996645-55996664 | None:intergenic | 50.0% | |
| TAGACGGCTGAGGTTAAGGA+CGG | + | chr1_2:55996727-55996746 | None:intergenic | 50.0% | |
| CCATTAGACGGCTGAGGTTA+AGG | + | chr1_2:55996731-55996750 | None:intergenic | 50.0% | |
| CCTTAACCTCAGCCGTCTAA+TGG | - | chr1_2:55996728-55996747 | Msa0078460:CDS | 50.0% | |
| TGAAGCTACCACGTGTTCTC+CGG | + | chr1_2:55996838-55996857 | None:intergenic | 50.0% | |
| GCTTCAAGAACACTCTACGG+TGG | - | chr1_2:55996852-55996871 | Msa0078460:CDS | 50.0% | |
| TATTCGCCACCGCCAAAGTT+GGG | + | chr1_2:55997019-55997038 | None:intergenic | 50.0% | |
| ATATTCGCCACCGCCAAAGT+TGG | + | chr1_2:55997020-55997039 | None:intergenic | 50.0% | |
| TTTGGCGGTGGCGAATATAC+CGG | - | chr1_2:55997022-55997041 | Msa0078460:CDS | 50.0% | |
| AGTTATGTAGGGTGGCGCAT+CGG | - | chr1_2:55997045-55997064 | Msa0078460:CDS | 50.0% | |
| TACTCCGATGGTGATTTCGC+CGG | - | chr1_2:55997100-55997119 | Msa0078460:intron | 50.0% | |
| TTCACCGGCGAAATCACCAT+CGG | + | chr1_2:55997107-55997126 | None:intergenic | 50.0% | |
| ACATCAGCACCAAGCTTCAC+CGG | + | chr1_2:55997122-55997141 | None:intergenic | 50.0% | |
| CTCGAAGTACATCAGTGGTG+GGG | - | chr1_2:55997157-55997176 | Msa0078460:intron | 50.0% | |
| !! | TGGTCTCATCGGTTCAAAGG+GGG | + | chr1_2:55998650-55998669 | None:intergenic | 50.0% |
| CTAAGGTGGGGGAATGAATG+TGG | + | chr1_2:55998885-55998904 | None:intergenic | 50.0% | |
| ACCAACTGAGCTAAGCTCAC+GGG | + | chr1_2:55999072-55999091 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr1_2:55999072-55999091 | Msa0078460:intron | 50.0% | |
| AACGATTGTTCACGGGAGTC+TGG | + | chr1_2:55999855-55999874 | None:intergenic | 50.0% | |
| !! | CGGAAGTGCTTGATGACGAA+TGG | + | chr1_2:56000101-56000120 | None:intergenic | 50.0% |
| ! | TTGTCCCGAGCTTTTACGGT+GGG | + | chr1_2:56000438-56000457 | None:intergenic | 50.0% |
| ! | ATTGTCCCGAGCTTTTACGG+TGG | + | chr1_2:56000439-56000458 | None:intergenic | 50.0% |
| !! | CGGAAGTGCTTGATGACGAA+TGG | + | chr1_2:56000101-56000120 | None:intergenic | 50.0% |
| CCCTTGATGGAGATCCATCA+TGG | + | chr1_2:56001316-56001335 | None:intergenic | 50.0% | |
| GAATCCCTCACTTAGGCCTA+AGG | - | chr1_2:56001394-56001413 | Msa0078460:CDS | 50.0% | |
| TCTGAGGAAAAGGTCCTAGC+TGG | - | chr1_2:56001714-56001733 | Msa0078460:CDS | 50.0% | |
| GTCCTAGCTGGAATATCACC+AGG | - | chr1_2:56001726-56001745 | Msa0078460:CDS | 50.0% | |
| GACCTGGTGATATTCCAGCT+AGG | + | chr1_2:56001731-56001750 | None:intergenic | 50.0% | |
| CGACACGAATTCGGCGAACA+CGG | - | chr1_2:55996570-55996589 | Msa0078460:CDS | 55.0% | |
| ACGGTCTGGACCTAACTCTC+CGG | + | chr1_2:55996670-55996689 | None:intergenic | 55.0% | |
| GGACGGTAGGGTTGAAGTGA+CGG | + | chr1_2:55996710-55996729 | None:intergenic | 55.0% | |
| GGCTGAGGTTAAGGACGGTA+GGG | + | chr1_2:55996722-55996741 | None:intergenic | 55.0% | |
| CTTCGAGAGCGGCCATTAGA+CGG | + | chr1_2:55996743-55996762 | None:intergenic | 55.0% | |
| GGCTTCTGTACCTTCGAGAG+CGG | + | chr1_2:55996754-55996773 | None:intergenic | 55.0% | |
| TTGGAGGATTGCGGCGGAAA+TGG | + | chr1_2:55996805-55996824 | None:intergenic | 55.0% | |
| ! | GGAGGTGAGTTGGAGGATTG+CGG | + | chr1_2:55996814-55996833 | None:intergenic | 55.0% |
| ATCCTCCAACTCACCTCCAC+CGG | - | chr1_2:55996816-55996835 | Msa0078460:CDS | 55.0% | |
| CTCAAACCCAACTTTGGCGG+TGG | - | chr1_2:55997010-55997029 | Msa0078460:CDS | 55.0% | |
| TGCGCCACCCTACATAACTC+CGG | + | chr1_2:55997044-55997063 | None:intergenic | 55.0% | |
| GTGATTTCGCCGGTGAAGCT+TGG | - | chr1_2:55997110-55997129 | Msa0078460:intron | 55.0% | |
| GGTGGGGCAGATATCATTGC+AGG | - | chr1_2:55997173-55997192 | Msa0078460:intron | 55.0% | |
| TGGTGGTATGGTCACCCAAG+TGG | + | chr1_2:55998807-55998826 | None:intergenic | 55.0% | |
| GGTGGGGGAATGAATGTGGA+TGG | + | chr1_2:55998881-55998900 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | + | chr1_2:55999071-55999090 | None:intergenic | 55.0% | |
| GTGGATGGTCTTCTAGGCCA+GGG | + | chr1_2:56001491-56001510 | None:intergenic | 55.0% | |
| TGTGGATGGTCTTCTAGGCC+AGG | + | chr1_2:56001492-56001511 | None:intergenic | 55.0% | |
| !! | GGGTGGTGGTGGTGGTCATA+AGG | + | chr1_2:55996431-55996450 | None:intergenic | 60.0% |
| ACGGTTTCGCTTGGCGGTTG+CGG | + | chr1_2:55996460-55996479 | None:intergenic | 60.0% | |
| TGAGGTGGCTGGGTCGAAGA+CGG | + | chr1_2:55996538-55996557 | None:intergenic | 60.0% | |
| GCCAGCGCACGACACGAATT+CGG | - | chr1_2:55996561-55996580 | Msa0078460:CDS | 60.0% | |
| CACGAATTCGGCGAACACGG+CGG | - | chr1_2:55996573-55996592 | Msa0078460:CDS | 60.0% | |
| ACTCTCCGACGCATGTTCGC+CGG | - | chr1_2:55996648-55996667 | Msa0078460:CDS | 60.0% | |
| ACTCTCCGGCGAACATGCGT+CGG | + | chr1_2:55996656-55996675 | None:intergenic | 60.0% | |
| CGCATGTTCGCCGGAGAGTT+AGG | - | chr1_2:55996657-55996676 | Msa0078460:CDS | 60.0% | |
| CGGCTGAGGTTAAGGACGGT+AGG | + | chr1_2:55996723-55996742 | None:intergenic | 60.0% | |
| CGTCTAATGGCCGCTCTCGA+AGG | - | chr1_2:55996741-55996760 | Msa0078460:CDS | 60.0% | |
| GCCGCTTACTGCACATCCAG+CGG | - | chr1_2:55996771-55996790 | Msa0078460:CDS | 60.0% | |
| GCCGCTGGATGTGCAGTAAG+CGG | + | chr1_2:55996775-55996794 | None:intergenic | 60.0% | |
| GAGGATTGCGGCGGAAATGG+CGG | + | chr1_2:55996802-55996821 | None:intergenic | 60.0% | |
| ! | GGTGAGTTGGAGGATTGCGG+CGG | + | chr1_2:55996811-55996830 | None:intergenic | 60.0% |
| GTTCTCCGGTGGAGGTGAGT+TGG | + | chr1_2:55996824-55996843 | None:intergenic | 60.0% | |
| TACCACGTGTTCTCCGGTGG+AGG | + | chr1_2:55996832-55996851 | None:intergenic | 60.0% | |
| AGCTACCACGTGTTCTCCGG+TGG | + | chr1_2:55996835-55996854 | None:intergenic | 60.0% | |
| TGTAGGGTGGCGCATCGGAA+AGG | - | chr1_2:55997050-55997069 | Msa0078460:CDS | 60.0% | |
| ! | GGCGCATCGGAAAGGTGTGA+CGG | - | chr1_2:55997058-55997077 | Msa0078460:intron | 60.0% |
| ! | GCATCGGAAAGGTGTGACGG+TGG | - | chr1_2:55997061-55997080 | Msa0078460:intron | 60.0% |
| ! | TCGGAAAGGTGTGACGGTGG+TGG | - | chr1_2:55997064-55997083 | Msa0078460:intron | 60.0% |
| ! | GAAAGGTGTGACGGTGGTGG+TGG | - | chr1_2:55997067-55997086 | Msa0078460:intron | 60.0% |
| CCCCGTGAGCTTAGCTCAGT+TGG | - | chr1_2:55999068-55999087 | Msa0078460:intron | 60.0% | |
| GTTTCGCTTGGCGGTTGCGG+TGG | + | chr1_2:55996457-55996476 | None:intergenic | 65.0% | |
| ! | CGCTGGCTAGTGAGGTGGCT+GGG | + | chr1_2:55996548-55996567 | None:intergenic | 65.0% |
| !! | TCGTGCGCTGGCTAGTGAGG+TGG | + | chr1_2:55996553-55996572 | None:intergenic | 65.0% |
| !! | GTGTCGTGCGCTGGCTAGTG+AGG | + | chr1_2:55996556-55996575 | None:intergenic | 65.0% |
| GCCGAATTCGTGTCGTGCGC+TGG | + | chr1_2:55996565-55996584 | None:intergenic | 65.0% | |
| GAGCGGCCATTAGACGGCTG+AGG | + | chr1_2:55996737-55996756 | None:intergenic | 65.0% | |
| !! | GGAAATGGCGGACATGCCGC+TGG | + | chr1_2:55996790-55996809 | None:intergenic | 65.0% |
| ! | CTCCGGTGGAGGTGAGTTGG+AGG | + | chr1_2:55996821-55996840 | None:intergenic | 65.0% |
| CACCTCCACCGGAGAACACG+TGG | - | chr1_2:55996827-55996846 | Msa0078460:CDS | 65.0% | |
| TCGCTTGGCGGTTGCGGTGG+CGG | + | chr1_2:55996454-55996473 | None:intergenic | 70.0% | |
| !! | GCGCTGGCTAGTGAGGTGGC+TGG | + | chr1_2:55996549-55996568 | None:intergenic | 70.0% |
| ! | CTTGGCGGTTGCGGTGGCGG+GGG | + | chr1_2:55996451-55996470 | None:intergenic | 75.0% |
| GCTTGGCGGTTGCGGTGGCG+GGG | + | chr1_2:55996452-55996471 | None:intergenic | 75.0% | |
| CGCTTGGCGGTTGCGGTGGC+GGG | + | chr1_2:55996453-55996472 | None:intergenic | 75.0% | |
| !!! | GGTGGCGGGGGTGGTGGTGG+TGG | + | chr1_2:55996439-55996458 | None:intergenic | 80.0% |
| !!! | TGCGGTGGCGGGGGTGGTGG+TGG | + | chr1_2:55996442-55996461 | None:intergenic | 80.0% |
| !!! | GGTTGCGGTGGCGGGGGTGG+TGG | + | chr1_2:55996445-55996464 | None:intergenic | 80.0% |
| !!! | GGCGGTTGCGGTGGCGGGGG+TGG | + | chr1_2:55996448-55996467 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55996299 | 56002056 | 55996299 | ID=Msa0078460;Name=Msa0078460 |
| chr1_2 | mRNA | 55996299 | 56002056 | 55996299 | ID=Msa0078460-mRNA-1;Parent=Msa0078460;Name=Msa0078460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=115|1|1|1|1|1|2|199|452 |
| chr1_2 | exon | 55996299 | 55997075 | 55996299 | ID=Msa0078460-mRNA-1:exon:17467;Parent=Msa0078460-mRNA-1 |
| chr1_2 | exon | 56001161 | 56002056 | 56001161 | ID=Msa0078460-mRNA-1:exon:17466;Parent=Msa0078460-mRNA-1 |
| chr1_2 | five_prime_UTR | 56001942 | 56002056 | 56001942 | ID=Msa0078460-mRNA-1:five_prime_utr;Parent=Msa0078460-mRNA-1 |
| chr1_2 | CDS | 56001161 | 56001941 | 56001161 | ID=Msa0078460-mRNA-1:cds;Parent=Msa0078460-mRNA-1 |
| chr1_2 | CDS | 55996498 | 55997075 | 55996498 | ID=Msa0078460-mRNA-1:cds;Parent=Msa0078460-mRNA-1 |
| chr1_2 | three_prime_UTR | 55996299 | 55996497 | 55996299 | ID=Msa0078460-mRNA-1:three_prime_utr;Parent=Msa0078460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
