AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033160 MtrunA17_Chr1g0191361 97.007 802 24 0 1 802 1 802 0.0 1613
Msa0033160 MtrunA17_Chr1g0196371 57.545 782 270 16 3 757 2 748 0.0 841
Msa0033160 MtrunA17_Chr2g0319371 38.936 827 407 23 12 781 27 812 6.53e-160 488
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033160 AT1G54710.1 60.526 760 273 9 4 760 18 753 0.0 876
Msa0033160 AT1G03380.1 53.140 828 321 17 1 789 1 800 0.0 780
Msa0033160 AT1G54710.2 59.724 653 239 8 111 760 1 632 0.0 754
Msa0033160 AT5G54730.1 34.100 783 399 24 1 753 1 696 7.25e-111 356
Msa0033160 AT5G54730.2 33.333 657 326 22 122 753 15 584 7.78e-87 289

Find 300 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATATAACTGCTGAAATTA+TGG 0.122281 1_1:+60469829 Msa0033160:three_prime_UTR
GAGCGGTTGTGGCACAATTT+AGG 0.179862 1_1:+60466883 Msa0033160:CDS
CTTAGTATTCTTTAACTTTA+GGG 0.207847 1_1:-60470271 None:intergenic
TCTAGCAAGCATTTGGCTTC+TGG 0.212143 1_1:+60466422 Msa0033160:CDS
CAGTACCCATCCCTATAAAT+AGG 0.231986 1_1:-60469940 None:intergenic
TAGCACTTACCCCTATTTAT+AGG 0.233063 1_1:+60469929 Msa0033160:three_prime_UTR
ACCTCAGATTTCTGCCAAAT+TGG 0.244250 1_1:-60468139 None:intergenic
CTTAGTATTCTTTAACTTTA+CGG 0.248353 1_1:-60470833 None:intergenic
CTTATTTCAACCTCATTATC+AGG 0.258960 1_1:-60468343 None:intergenic
GCTGATCAATCTTAGTGATA+TGG 0.272322 1_1:+60466445 Msa0033160:CDS
CCGCTGCTTGGTGATGTTGA+TGG 0.280443 1_1:-60466371 None:intergenic
ATCACAACCGTCTTCGTTAA+AGG 0.281183 1_1:+60463939 Msa0033160:five_prime_UTR
CTGTCGAGTTCCTGAAAGTT+TGG 0.293582 1_1:-60471411 None:intergenic
AGCGGTTGTGGCACAATTTA+GGG 0.293715 1_1:+60466884 Msa0033160:CDS
AAACCAAACATAAATGATAT+TGG 0.297937 1_1:+60470997 Msa0033160:three_prime_UTR
TTGCTGGTTTATACTCCTTC+TGG 0.302626 1_1:+60467782 Msa0033160:CDS
TTAGTATTCTTTAACTTTAC+GGG 0.315375 1_1:-60470832 None:intergenic
GTTCTTGAAGCAGTTTCATT+TGG 0.318173 1_1:-60467848 None:intergenic
CATGAGAGTTATTGCAGTTC+AGG 0.319310 1_1:-60470171 None:intergenic
AGCACTTACCCCTATTTATA+GGG 0.319654 1_1:+60469930 Msa0033160:three_prime_UTR
CTAGTTACAGCCTCAATTCA+TGG 0.319946 1_1:+60466957 Msa0033160:CDS
AAATCATAATTGGCAGCTTC+TGG 0.320499 1_1:+60471211 Msa0033160:three_prime_UTR
AAGTACAATCCCAAACTTTC+AGG 0.321669 1_1:+60471401 Msa0033160:three_prime_UTR
TTTCCTATTCAATCAGGATT+AGG 0.322355 1_1:-60469967 None:intergenic
CTAGCAAGCATTTGGCTTCT+GGG 0.324176 1_1:+60466423 Msa0033160:CDS
AATATAACTGCTGAAATTAT+GGG 0.325312 1_1:+60469830 Msa0033160:three_prime_UTR
CACTTATCCTGTGCCTCAGT+TGG 0.327207 1_1:+60466205 Msa0033160:CDS
ATTGGCAGCTTCTGGTGCTC+TGG 0.327248 1_1:+60471219 Msa0033160:three_prime_UTR
GCGTATGCATTGTGCGAATC+AGG 0.330024 1_1:-60467737 None:intergenic
AGAAAGAGATAAATAATAAG+AGG 0.330139 1_1:+60471510 Msa0033160:three_prime_UTR
TCATGCCATGGAACACTTGC+TGG 0.331523 1_1:+60467766 Msa0033160:CDS
GCAGGCACGGCCGTGGTAGA+TGG 0.334245 1_1:+60471325 Msa0033160:three_prime_UTR
GGAAACTGCTGAAATGATAT+TGG 0.334443 1_1:+60468009 Msa0033160:CDS
TGGAAGATGCCTCTAATATC+AGG 0.335031 1_1:+60465476 Msa0033160:CDS
GTCGGCAGGGACGGAATTCC+CGG 0.336411 1_1:+60464093 Msa0033160:five_prime_UTR
GCGCAGATATAGGACTAGTA+TGG 0.338742 1_1:-60466908 None:intergenic
GTTCATGAAACTTGTGGTTT+TGG 0.339074 1_1:-60470901 None:intergenic
GGAATGGTTGGGGTTAATAT+TGG 0.344344 1_1:+60466236 Msa0033160:CDS
GCAGCATACGGTGGTGGGTC+AGG 0.345238 1_1:+60471291 Msa0033160:three_prime_UTR
CAGCCTGAATTCGGTGATAC+AGG 0.346522 1_1:-60466524 None:intergenic
CGCTGCTTGGTGATGTTGAT+GGG 0.347448 1_1:-60466370 None:intergenic
TGTCGAGTTCCTGAAAGTTT+GGG 0.354381 1_1:-60471410 None:intergenic
TCCCCTGTATCACCGAATTC+AGG 0.357654 1_1:+60466521 Msa0033160:CDS
TGATTCCGTAAAACTTAATC+AGG 0.359118 1_1:+60468069 Msa0033160:CDS
ATGTAAGTGCTGGCTTAATA+TGG 0.359293 1_1:-60470946 None:intergenic
GACAAGTTCCCTGATATTAG+AGG 0.368128 1_1:-60465485 None:intergenic
TTAGGTGTCTTTCTTTGTGA+TGG 0.368906 1_1:+60468249 Msa0033160:intron
AATTGTCAGAGGCATTGTTT+TGG 0.370474 1_1:+60469640 Msa0033160:intron
ACTCCGGGAGGATACCAATT+TGG 0.373742 1_1:+60468125 Msa0033160:CDS
CGGCCAATATCATTTATGTT+TGG 0.375668 1_1:-60471000 None:intergenic
AATGAATAAAGACTAGAATA+TGG 0.376698 1_1:+60469875 Msa0033160:three_prime_UTR
AATCGTTCCAGCTAGGTCTT+TGG 0.378961 1_1:-60470972 None:intergenic
TGCTTTGGGCTTGCTTTGAC+AGG 0.379869 1_1:+60465380 Msa0033160:CDS
TTGGCAGCTTCTGGTGCTCT+GGG 0.381647 1_1:+60471220 Msa0033160:three_prime_UTR
TGCTAGATTCCATAGCATAT+CGG 0.384870 1_1:-60466406 None:intergenic
CGACGGAGGCGCCGGCAGTT+CGG 0.385134 1_1:-60464256 None:intergenic
AGTACCCATCCCTATAAATA+GGG 0.387067 1_1:-60469939 None:intergenic
CCGCGACTCTCGTCGTCGGC+AGG 0.393184 1_1:+60464079 Msa0033160:five_prime_UTR
TTGGGTGGGCAAGGAATGGT+TGG 0.394175 1_1:+60466224 Msa0033160:CDS
AGAAGCAGCGACGGAGGCGC+CGG 0.397817 1_1:-60464264 None:intergenic
ATTATCTTGCACTTGCAGTT+TGG 0.398493 1_1:-60470207 None:intergenic
CTAACTTTCCAGCCTGAATT+CGG 0.399263 1_1:-60466533 None:intergenic
ACTCCTAATCCTGATTGAAT+AGG 0.403992 1_1:+60469964 Msa0033160:three_prime_UTR
AGAAAGAAAAGCAGGAGGTT+GGG 0.404547 1_1:-60467585 None:intergenic
GACTTGTGTTTAACAACAAT+GGG 0.406696 1_1:-60466310 None:intergenic
TCAAAACATAGCGCAGATAT+AGG 0.408648 1_1:-60466918 None:intergenic
TAAAACCTAAAACTTCAATA+TGG 0.410426 1_1:-60471481 None:intergenic
GCTACCAGGTTTCCGCTGCT+TGG 0.417730 1_1:-60466383 None:intergenic
TAGGTGTCTTTCTTTGTGAT+GGG 0.424566 1_1:+60468250 Msa0033160:intron
TGGGTGGGCAAGGAATGGTT+GGG 0.424586 1_1:+60466225 Msa0033160:CDS
ATTGTGAAAATTATAGTGTT+GGG 0.425168 1_1:+60468041 Msa0033160:CDS
AATTGTGAAAATTATAGTGT+TGG 0.429375 1_1:+60468040 Msa0033160:CDS
GGCCACCACCGGTGAGTGAC+CGG 0.430899 1_1:-60464112 None:intergenic
TTCAGTCCACTTGGGGTGAC+AGG 0.431138 1_1:+60468407 Msa0033160:CDS
GCCGCGATTCTGCTATGCTT+TGG 0.433374 1_1:-60463895 None:intergenic
AGCATCACATCCTTTACTCT+TGG 0.434935 1_1:+60465585 Msa0033160:CDS
GCAGGAGGAGTCGGACTTTG+AGG 0.438368 1_1:-60466341 None:intergenic
AATGTTTCATCTTCTGCAGC+AGG 0.443523 1_1:+60467659 Msa0033160:CDS
TTGTTTCTGCTTGTTTAGTC+CGG 0.445917 1_1:-60471138 None:intergenic
TCCTCCGGCGTCCGAACTGC+CGG 0.446318 1_1:+60464245 Msa0033160:CDS
CGGGTTCTCAAAGCAATGAT+TGG 0.446623 1_1:+60467030 Msa0033160:CDS
CCACAAGTTTCATGAACAAC+AGG 0.447805 1_1:+60470907 Msa0033160:three_prime_UTR
TAACCTACTATCGTCATTGA+TGG 0.448610 1_1:+60467820 Msa0033160:CDS
TTCAATATGGTATCTGCGCC+AGG 0.450980 1_1:-60471468 None:intergenic
TATGGAATCTAGCAAGCATT+TGG 0.451298 1_1:+60466415 Msa0033160:CDS
CTGATCAATCTTAGTGATAT+GGG 0.453531 1_1:+60466446 Msa0033160:CDS
ATTCGGTGATACAGGGGAAC+TGG 0.455908 1_1:-60466516 None:intergenic
CTCTATTTCAATCTCCCCAT+TGG 0.457148 1_1:-60468314 None:intergenic
TTAACTGTACCTGGCTTTGT+GGG 0.458457 1_1:+60469743 Msa0033160:CDS
AAGCAGGAGGTTGGGGTGGG+TGG 0.460095 1_1:-60467577 None:intergenic
CAATGGGGAGATTGAAATAG+AGG 0.461586 1_1:+60468315 Msa0033160:CDS
CGACTTGTGTTTAACAACAA+TGG 0.461697 1_1:-60466311 None:intergenic
AGAAAAGCAGGAGGTTGGGG+TGG 0.461895 1_1:-60467581 None:intergenic
CATCCGAAGTTAACTGTACC+TGG 0.462498 1_1:+60469734 Msa0033160:CDS
CACAAAATTCAGTCCACTTG+GGG 0.463372 1_1:+60468400 Msa0033160:CDS
ACTTATCCTGTGCCTCAGTT+GGG 0.463385 1_1:+60466206 Msa0033160:CDS
CTATTTATAGGGATGGGTAC+TGG 0.464891 1_1:+60469941 Msa0033160:three_prime_UTR
GTTAACTGTACCTGGCTTTG+TGG 0.465939 1_1:+60469742 Msa0033160:CDS
AGACCCACAGCGACTATTTG+AGG 0.470535 1_1:-60465790 None:intergenic
GCTAGATTCCATAGCATATC+GGG 0.471561 1_1:-60466405 None:intergenic
GTGCCTCAGTTGGGTGGGCA+AGG 0.473182 1_1:+60466215 Msa0033160:CDS
TTTACGATCGGTTCCATCGC+CGG 0.473917 1_1:-60464291 None:intergenic
GGTGGCAAAGCTGTTGATGC+TGG 0.477418 1_1:-60467559 None:intergenic
GGCAGCTTCTGGTGCTCTGG+GGG 0.477885 1_1:+60471222 Msa0033160:three_prime_UTR
GGGGAGTACACCTGGTGGAC+TGG 0.477946 1_1:+60467988 Msa0033160:CDS
AGAACTGTCTCACCACCAAA+AGG 0.478321 1_1:-60467449 None:intergenic
CCATAGCATATCGGGCTACC+AGG 0.479379 1_1:-60466397 None:intergenic
TAGGTGGCAGCATACGGTGG+TGG 0.479911 1_1:+60471285 Msa0033160:three_prime_UTR
AGAAGATTTACGAGTGAAAG+TGG 0.482850 1_1:+60467901 Msa0033160:CDS
CAGACATCCCACCATTGAAC+AGG 0.484714 1_1:-60467926 None:intergenic
GAAAGAAAAGCAGGAGGTTG+GGG 0.484867 1_1:-60467584 None:intergenic
ATCGAGAACTTGAAATCCAT+TGG 0.485519 1_1:-60465452 None:intergenic
TCCTACTCAAAGAAAGGATC+GGG 0.486675 1_1:+60467011 Msa0033160:CDS
TATCCTGTGCCTCAGTTGGG+TGG 0.488213 1_1:+60466209 Msa0033160:CDS
GAAGTGATCTCAGCAGTGCC+AGG 0.488667 1_1:-60471185 None:intergenic
TCCACAAAATTCAGTCCACT+TGG 0.488720 1_1:+60468398 Msa0033160:CDS
TCAGTTGGGTGGGCAAGGAA+TGG 0.489898 1_1:+60466220 Msa0033160:CDS
CTGCCATCAATGACGATAGT+AGG 0.491239 1_1:-60467823 None:intergenic
AGGAACGAATCCATTGCTCT+TGG 0.493674 1_1:-60464183 None:intergenic
ATTCCGTTCAACTGTCTACA+TGG 0.494684 1_1:+60465756 Msa0033160:CDS
TCCCGGTCACTCACCGGTGG+TGG 0.495181 1_1:+60464110 Msa0033160:five_prime_UTR
AGATGGCCACAACGAAGCTC+AGG 0.495493 1_1:+60465657 Msa0033160:CDS
ACTCTCGTCGTCGGCAGGGA+CGG 0.495951 1_1:+60464084 Msa0033160:five_prime_UTR
CCACAAAATTCAGTCCACTT+GGG 0.496716 1_1:+60468399 Msa0033160:CDS
GTTTAACAACAATGGGTTGT+TGG 0.498232 1_1:-60466303 None:intergenic
CTCCTACTCGGTTATTCCAA+TGG 0.498897 1_1:+60465436 Msa0033160:CDS
TGCATTAAGACGGCTTCCTC+CGG 0.501805 1_1:+60464230 Msa0033160:CDS
GGTCAGGCAACAATGGTGGC+AGG 0.504459 1_1:+60471307 Msa0033160:three_prime_UTR
GGGTGGGCAAGGAATGGTTG+GGG 0.508582 1_1:+60466226 Msa0033160:CDS
CGTTCCAGCTAGGTCTTTGG+CGG 0.509063 1_1:-60470969 None:intergenic
AACAAGCAGAAACAACGATA+GGG 0.510360 1_1:+60471146 Msa0033160:three_prime_UTR
ATGCCTTCCTACTCAAAGAA+AGG 0.510586 1_1:+60467005 Msa0033160:CDS
CTTACCCCTATTTATAGGGA+TGG 0.511073 1_1:+60469934 Msa0033160:three_prime_UTR
GTCCGATGGCTGTAGGGCCA+CGG 0.511127 1_1:+60466264 Msa0033160:CDS
TGGAACCGATCGTAAAGATC+AGG 0.512333 1_1:+60464298 Msa0033160:CDS
CAGGTACAGTTAACTTCGGA+TGG 0.512564 1_1:-60469733 None:intergenic
GAACTGTCTCACCACCAAAA+GGG 0.513131 1_1:-60467448 None:intergenic
GGCAACAATGGTGGCAGGCA+CGG 0.513684 1_1:+60471312 Msa0033160:three_prime_UTR
TAATGCCGGATGGCTTAATA+CGG 0.513868 1_1:+60467631 Msa0033160:CDS
AACGATAGGGGTAGAAGAAT+AGG 0.514262 1_1:+60471159 Msa0033160:three_prime_UTR
TGCTTTGACAGGCTAGAGCT+CGG 0.514606 1_1:+60465391 Msa0033160:CDS
AGAGTTGAAGACGACGGAGT+TGG 0.515686 1_1:-60464031 None:intergenic
GTTGGGGTTAATATTGGCTA+TGG 0.515823 1_1:+60466242 Msa0033160:CDS
GGCTATGGTCCGATGGCTGT+AGG 0.516684 1_1:+60466257 Msa0033160:CDS
AATGGTGGCAGGCACGGCCG+TGG 0.520777 1_1:+60471318 Msa0033160:three_prime_UTR
CAGAAAGAAAAGCAGGAGGT+TGG 0.520924 1_1:-60467586 None:intergenic
GAAATGAACTTGAAAGAAGA+AGG 0.522169 1_1:-60464203 None:intergenic
TTAGAGCATGAACATAGGTA+TGG 0.523088 1_1:-60465732 None:intergenic
GGGAAAGTCTCAGTTCCATC+TGG 0.523092 1_1:+60467680 Msa0033160:CDS
TGCCCACCCAACTGAGGCAC+AGG 0.523609 1_1:-60466212 None:intergenic
CACCGTGGCCCTACAGCCAT+CGG 0.523773 1_1:-60466266 None:intergenic
AAATGTTAGGTGGCAGCATA+CGG 0.526062 1_1:+60471279 Msa0033160:three_prime_UTR
ATCCTGTGCCTCAGTTGGGT+GGG 0.527851 1_1:+60466210 Msa0033160:CDS
ATCACCAAGCAGCGGAAACC+TGG 0.529348 1_1:+60466379 Msa0033160:CDS
ATAATAAAAGCTTTCACACT+GGG 0.529826 1_1:-60469793 None:intergenic
ATGCTCTTTGAAAGAGAGAC+AGG 0.530548 1_1:+60470876 Msa0033160:three_prime_UTR
TCCGTCGCTGCTTCTATCTC+CGG 0.530686 1_1:+60464272 Msa0033160:CDS
GAAAGAGATAAATAATAAGA+GGG 0.530712 1_1:+60471511 Msa0033160:three_prime_UTR
TCTATATCGGGGAGTACACC+TGG 0.530880 1_1:+60467980 Msa0033160:CDS
GCCTCTCCCTGCAAAAGCAG+AGG 0.532861 1_1:+60465546 Msa0033160:CDS
GGGTAGAAGAATAGGAGGCC+TGG 0.533730 1_1:+60471167 Msa0033160:three_prime_UTR
ACAGGGGAACTGGATCCATC+AGG 0.534199 1_1:-60466506 None:intergenic
TTAGTATTCTTTAACTTTAG+GGG 0.534539 1_1:-60470270 None:intergenic
AGTTCTTAAGATACACAATC+AGG 0.535021 1_1:+60467466 Msa0033160:CDS
TCTTTGGCGGATGTAAGTGC+TGG 0.535522 1_1:-60470956 None:intergenic
GAACATGTCAAATAACAACT+TGG 0.536205 1_1:+60471094 Msa0033160:three_prime_UTR
TTGTGGAAATGATCAAGGAC+GGG 0.536944 1_1:-60468382 None:intergenic
CCTGGTAGCCCGATATGCTA+TGG 0.538012 1_1:+60466397 Msa0033160:CDS
AAATCTTCTTCTTGTATCTG+TGG 0.538300 1_1:-60467887 None:intergenic
CTGTATCACCGAATTCAGGC+TGG 0.539993 1_1:+60466525 Msa0033160:CDS
TTCAAACGTGTACTCCTACT+CGG 0.540235 1_1:+60465424 Msa0033160:CDS
TCAGCAGTTTCCAGTCCACC+AGG 0.541618 1_1:-60467998 None:intergenic
GATGTTGATGGGCTGACAGC+AGG 0.541983 1_1:-60466359 None:intergenic
CTGCCAAATTGGTATCCTCC+CGG 0.543872 1_1:-60468128 None:intergenic
GAAAAGCAGGAGGTTGGGGT+GGG 0.546994 1_1:-60467580 None:intergenic
TAACAACAATGGGTTGTTGG+AGG 0.547432 1_1:-60466300 None:intergenic
CGACATTATCGAAAATGTGT+GGG 0.547590 1_1:+60463830 Msa0033160:five_prime_UTR
CGCGACTCTCGTCGTCGGCA+GGG 0.547704 1_1:+60464080 Msa0033160:five_prime_UTR
AGCCTGAATTCGGTGATACA+GGG 0.548808 1_1:-60466523 None:intergenic
GCTATGGTCCGATGGCTGTA+GGG 0.549410 1_1:+60466258 Msa0033160:CDS
TCTTCTTGTATCTGTGGTGA+AGG 0.550396 1_1:-60467881 None:intergenic
GTTGCTGTCATTTCCTCCAA+GGG 0.550632 1_1:+60467401 Msa0033160:CDS
AGAAACAGATGCGGCTGGAG+TGG 0.550843 1_1:+60466577 Msa0033160:CDS
AATATGACAAGTTCCCTTGG+AGG 0.552210 1_1:-60467414 None:intergenic
CGGAATTCCCGGTCACTCAC+CGG 0.552380 1_1:+60464104 Msa0033160:five_prime_UTR
CTGTTAGATTCTACTCACTA+AGG 0.552645 1_1:+60465707 Msa0033160:CDS
GGTTTGAAATCGTTCCAGCT+AGG 0.553808 1_1:-60470979 None:intergenic
CGCAGATATAGGACTAGTAT+GGG 0.554454 1_1:-60466907 None:intergenic
TATCAAGATCTAATGCCTGA+TGG 0.555177 1_1:+60466491 Msa0033160:CDS
TGAGGTTGAAATAAGACAGA+AGG 0.557513 1_1:+60468351 Msa0033160:CDS
TTCCTACTCAAAGAAAGGAT+CGG 0.557533 1_1:+60467010 Msa0033160:CDS
GCTGCTTCTATCTCCGGCGA+TGG 0.557714 1_1:+60464278 Msa0033160:CDS
GGGCTGACAGCAGGAGGAGT+CGG 0.558059 1_1:-60466350 None:intergenic
TATAATAAAAGCTTTCACAC+TGG 0.559103 1_1:-60469794 None:intergenic
CCTGTTGTTCATGAAACTTG+TGG 0.561849 1_1:-60470907 None:intergenic
GGTTGCTGTCATTTCCTCCA+AGG 0.562410 1_1:+60467400 Msa0033160:CDS
TTCGGTTATTTGAGTTGTGG+TGG 0.562449 1_1:-60463977 None:intergenic
CCTCTCCCTGCAAAAGCAGA+GGG 0.565243 1_1:+60465547 Msa0033160:CDS
ACATCCGCCAAAGACCTAGC+TGG 0.565406 1_1:+60470965 Msa0033160:three_prime_UTR
CATGCAACAACCAAGAGTAA+AGG 0.565496 1_1:-60465595 None:intergenic
CAGAGGTGCATATAAACTCC+GGG 0.565872 1_1:+60468110 Msa0033160:CDS
TCTACAGAAACAGATGCGGC+TGG 0.565883 1_1:+60466572 Msa0033160:CDS
TGCTACCTGATCTTTACGAT+CGG 0.565956 1_1:-60464303 None:intergenic
GGAGTGAACCACCATGGTAG+AGG 0.566226 1_1:-60467521 None:intergenic
ACGACGGAGTTGGCCGTGCA+CGG 0.566507 1_1:-60464021 None:intergenic
AATTTGACCTTTAACGAAGA+CGG 0.566522 1_1:-60463946 None:intergenic
TTACCCCTATTTATAGGGAT+GGG 0.566717 1_1:+60469935 Msa0033160:three_prime_UTR
CAGCAGCTGAAGCTATAGCT+AGG 0.568162 1_1:+60471030 Msa0033160:three_prime_UTR
GCAAAAGCAGAGGGCTGTGA+CGG 0.569477 1_1:+60465556 Msa0033160:CDS
GGCACGGCCGTGGTAGATGG+TGG 0.571144 1_1:+60471328 Msa0033160:three_prime_UTR
GCTTCAGCTGCTGTAAGCAT+CGG 0.572787 1_1:-60471020 None:intergenic
CTAACCACAGAAAGAAAAGC+AGG 0.573795 1_1:-60467593 None:intergenic
GCCACCACCGGTGAGTGACC+GGG 0.574100 1_1:-60464111 None:intergenic
CATTTCGTCTTGCATTAAGA+CGG 0.575776 1_1:+60464220 Msa0033160:CDS
AGGTGGCAGCATACGGTGGT+GGG 0.576613 1_1:+60471286 Msa0033160:three_prime_UTR
GATCCTTTCTTTGAGTAGGA+AGG 0.577226 1_1:-60467008 None:intergenic
ATCGTGTAGATGAAGAAGCA+AGG 0.578102 1_1:+60464143 Msa0033160:exon
AACTGTCTCACCACCAAAAG+GGG 0.579524 1_1:-60467447 None:intergenic
TGGCAGCTTCTGGTGCTCTG+GGG 0.579908 1_1:+60471221 Msa0033160:three_prime_UTR
GGTGGGTCAGGCAACAATGG+TGG 0.580432 1_1:+60471303 Msa0033160:three_prime_UTR
GCAGAGGTGCATATAAACTC+CGG 0.580890 1_1:+60468109 Msa0033160:CDS
ACTAACCGTATTAAGCCATC+CGG 0.582236 1_1:-60467636 None:intergenic
TGCCACGGTGGAGCTTGTAA+AGG 0.583238 1_1:-60467070 None:intergenic
AGAGGATATTCCTGATAATG+AGG 0.584571 1_1:+60468333 Msa0033160:CDS
GGTGGTGGGTCAGGCAACAA+TGG 0.585004 1_1:+60471300 Msa0033160:three_prime_UTR
GTGTTCGGTTATTTGAGTTG+TGG 0.585857 1_1:-60463980 None:intergenic
AACAACGTTTCCAAGAGCAA+TGG 0.586174 1_1:+60464173 Msa0033160:CDS
AACATGTCAAATAACAACTT+GGG 0.586503 1_1:+60471095 Msa0033160:three_prime_UTR
CTGTTACCTGTCACCCCAAG+TGG 0.588510 1_1:-60468413 None:intergenic
TAATATTGGCTATGGTCCGA+TGG 0.588529 1_1:+60466250 Msa0033160:CDS
AGTCGCGGAACGCAGTCGAT+CGG 0.589122 1_1:-60464064 None:intergenic
TACTGAATTAAGTGACCAGA+AGG 0.590764 1_1:-60467797 None:intergenic
TTTCAGCCTGAGCTTCGTTG+TGG 0.591381 1_1:-60465663 None:intergenic
GGAGATAGAAGCAGCGACGG+AGG 0.591766 1_1:-60464270 None:intergenic
TAGAGCATGAACATAGGTAT+GGG 0.591981 1_1:-60465731 None:intergenic
GGCGCCGGCAGTTCGGACGC+CGG 0.593055 1_1:-60464249 None:intergenic
TTTGTGGAAATGATCAAGGA+CGG 0.594219 1_1:-60468383 None:intergenic
CAGTCCTCAAATAGTCGCTG+TGG 0.595369 1_1:+60465786 Msa0033160:CDS
ATATAACTGCTGAAATTATG+GGG 0.596597 1_1:+60469831 Msa0033160:three_prime_UTR
ATAAACCAGCAAGTGTTCCA+TGG 0.597706 1_1:-60467771 None:intergenic
TGAAAGTGGAACCTGTTCAA+TGG 0.597917 1_1:+60467915 Msa0033160:CDS
TCGTGTAGATGAAGAAGCAA+GGG 0.597937 1_1:+60464144 Msa0033160:exon
ACGACATTATCGAAAATGTG+TGG 0.601636 1_1:+60463829 Msa0033160:five_prime_UTR
ACAGCAGAAACAGCACCAGA+TGG 0.603039 1_1:-60467695 None:intergenic
AAGATAATAATTAAGTAACA+TGG 0.604018 1_1:+60469997 Msa0033160:three_prime_UTR
AAACAAGCAGAAACAACGAT+AGG 0.607937 1_1:+60471145 Msa0033160:three_prime_UTR
GATGTTATTACCATGAATTG+AGG 0.608809 1_1:-60466967 None:intergenic
ATGTTTCATCTTCTGCAGCA+GGG 0.610620 1_1:+60467660 Msa0033160:CDS
ACAGTGCAAAATGTCAGAGA+TGG 0.618661 1_1:+60465640 Msa0033160:CDS
GAATCTTAGAGCATGAACAT+AGG 0.620118 1_1:-60465737 None:intergenic
ACCAATTTGGCAGAAATCTG+AGG 0.621938 1_1:+60468138 Msa0033160:CDS
GGAAGATGCCTCTAATATCA+GGG 0.623650 1_1:+60465477 Msa0033160:CDS
GCCGGAGATAGAAGCAGCGA+CGG 0.627399 1_1:-60464273 None:intergenic
GCCGGCAGTTCGGACGCCGG+AGG 0.628097 1_1:-60464246 None:intergenic
TCTCACCACCAAAAGGGGAA+AGG 0.628650 1_1:-60467442 None:intergenic
GTACCCATCCCTATAAATAG+GGG 0.629147 1_1:-60469938 None:intergenic
ACAAGCAGAAACAACGATAG+GGG 0.630637 1_1:+60471147 Msa0033160:three_prime_UTR
ACCCGATCCTTTCTTTGAGT+AGG 0.631333 1_1:-60467012 None:intergenic
TAACCATGTAGACAGTTGAA+CGG 0.635643 1_1:-60465759 None:intergenic
AAGTGGAACCTGTTCAATGG+TGG 0.635842 1_1:+60467918 Msa0033160:CDS
ATGTCTGTAGAAGATATGAT+TGG 0.636891 1_1:+60467942 Msa0033160:CDS
TTGACACGGAGGATCAAACC+TGG 0.638385 1_1:+60471450 Msa0033160:three_prime_UTR
CCTGCCGACGACGAGAGTCG+CGG 0.638796 1_1:-60464079 None:intergenic
ATACACAATCAGGACACAGA+AGG 0.639988 1_1:+60467476 Msa0033160:CDS
GATAGGGGTAGAAGAATAGG+AGG 0.641093 1_1:+60471162 Msa0033160:three_prime_UTR
ATTCCTTGCCCACCCAACTG+AGG 0.642669 1_1:-60466218 None:intergenic
AAGCCAGGTACAGTTAACTT+CGG 0.644189 1_1:-60469737 None:intergenic
AGTCCTCAAATAGTCGCTGT+GGG 0.644493 1_1:+60465787 Msa0033160:CDS
TGCTGGTTTACAGTAAAATG+TGG 0.645882 1_1:-60467542 None:intergenic
AGGTACAGTTAACTTCGGAT+GGG 0.646044 1_1:-60469732 None:intergenic
TGGATTTCAAGTTCTCGATG+TGG 0.646580 1_1:+60465456 Msa0033160:CDS
TGTGATAAATCAAAGATACC+TGG 0.646678 1_1:+60465616 Msa0033160:CDS
ACCAAAGCATAGCAGAATCG+CGG 0.648729 1_1:+60463894 Msa0033160:five_prime_UTR
GCCTGAATTCGGTGATACAG+GGG 0.657469 1_1:-60466522 None:intergenic
TTGTCACGTCTCAAATGCAG+AGG 0.660933 1_1:+60468093 Msa0033160:CDS
ATCCATTGGAATAACCGAGT+AGG 0.661164 1_1:-60465438 None:intergenic
AATTCCCGGTCACTCACCGG+TGG 0.662119 1_1:+60464107 Msa0033160:five_prime_UTR
TGCATAAGAGTTGAAGACGA+CGG 0.663554 1_1:-60464037 None:intergenic
CGATGGCTGTAGGGCCACGG+TGG 0.664390 1_1:+60466267 Msa0033160:CDS
AGTGGAACCTGTTCAATGGT+GGG 0.666683 1_1:+60467919 Msa0033160:CDS
CGTTCCGCGACTCTCGTCGT+CGG 0.667415 1_1:+60464075 Msa0033160:five_prime_UTR
TGTTAGGTGGCAGCATACGG+TGG 0.672372 1_1:+60471282 Msa0033160:three_prime_UTR
TATGCATTGTGCGAATCAGG+AGG 0.673488 1_1:-60467734 None:intergenic
GACATTATCGAAAATGTGTG+GGG 0.676520 1_1:+60463831 Msa0033160:five_prime_UTR
GTTGCTGCCACCATCTACCA+CGG 0.678399 1_1:-60471335 None:intergenic
CCATCAACATCACCAAGCAG+CGG 0.680372 1_1:+60466371 Msa0033160:CDS
ATACGCAAAAGTTCATGCCA+TGG 0.683570 1_1:+60467754 Msa0033160:CDS
AAATGTGGAGTGAACCACCA+TGG 0.691383 1_1:-60467527 None:intergenic
ACGGAGTTGGCCGTGCACGG+CGG 0.691410 1_1:-60464018 None:intergenic
AAATTCTACAGAAACAGATG+CGG 0.692764 1_1:+60466568 Msa0033160:CDS
ATACTGCGGATGTCATGCCA+CGG 0.696634 1_1:-60467085 None:intergenic
CTGCGGATGTCATGCCACGG+TGG 0.707398 1_1:-60467082 None:intergenic
ACCACAGAAAGAAAAGCAGG+AGG 0.715286 1_1:-60467590 None:intergenic
GAATAATATGAGACTTGACA+CGG 0.716375 1_1:+60471436 Msa0033160:three_prime_UTR
GTTGATGGGCTGACAGCAGG+AGG 0.724183 1_1:-60466356 None:intergenic
CACCTTTACAAGCTCCACCG+TGG 0.728912 1_1:+60467068 Msa0033160:CDS
AGGTGCATATAAACTCCGGG+AGG 0.742328 1_1:+60468113 Msa0033160:CDS
ATATCGGGGAGTACACCTGG+TGG 0.750372 1_1:+60467983 Msa0033160:CDS
TAATATGAGACTTGACACGG+AGG 0.757966 1_1:+60471439 Msa0033160:three_prime_UTR
GAGGCATAAGCTAACCACCG+TGG 0.793825 1_1:-60466281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAATTTTTTTTAATA+GGG - chr1_1:60469017-60469036 None:intergenic 0.0%
!!! AAATTTTAATTTTTTTTAAT+AGG - chr1_1:60469018-60469037 None:intergenic 0.0%
!! TATTAAAAAAAATTAAAATT+TGG + chr1_1:60469017-60469036 Msa0033160:intron 0.0%
!!! TATTTAATTTAGGTTAATTT+TGG + chr1_1:60464570-60464589 Msa0033160:intron 10.0%
!! AATAAATTAGAATATTTGTT+TGG + chr1_1:60464657-60464676 Msa0033160:intron 10.0%
!!! TTTTAATTTTTTTTAATAGG+GGG - chr1_1:60469192-60469211 None:intergenic 10.0%
!!! CATTAATTTTAATTTTCAAA+GGG - chr1_1:60470151-60470170 None:intergenic 10.0%
!!! CATTAATTTTAATTTTCAAA+GGG - chr1_1:60470151-60470170 None:intergenic 10.0%
!!! TTTTTTTTTAAAGAAATGTT+AGG + chr1_1:60471266-60471285 Msa0033160:three_prime_UTR 10.0%
!! AAGTAAGTTATTTAAAAAGT+TGG + chr1_1:60465079-60465098 Msa0033160:intron 15.0%
!!! TGTTTGAATATTTTAAATGA+GGG - chr1_1:60465972-60465991 None:intergenic 15.0%
!!! ATGTTTGAATATTTTAAATG+AGG - chr1_1:60465973-60465992 None:intergenic 15.0%
!! TTTGCAATTATAGAAAAATA+AGG - chr1_1:60467312-60467331 None:intergenic 15.0%
!!! TTATTTTTCTATAATTGCAA+AGG + chr1_1:60467311-60467330 Msa0033160:intron 15.0%
!!! ATAATTTTCATTCTAAACAT+GGG + chr1_1:60468498-60468517 Msa0033160:intron 15.0%
!!! TTTTTTTGTCATTAAAAACA+TGG + chr1_1:60468710-60468729 Msa0033160:intron 15.0%
!! AATAAAATAAAATAGTTCCT+TGG - chr1_1:60468825-60468844 None:intergenic 15.0%
!! AAAACATAAAATTGAATGTT+AGG + chr1_1:60469289-60469308 Msa0033160:intron 15.0%
!! AAGATAATAATTAAGTAACA+TGG + chr1_1:60469997-60470016 Msa0033160:three_prime_UTR 15.0%
!!! GCATTAATTTTAATTTTCAA+AGG - chr1_1:60470152-60470171 None:intergenic 15.0%
!! AAGATAATAATTAAGTAACA+TGG + chr1_1:60469997-60470016 Msa0033160:three_prime_UTR 15.0%
!!! GCATTAATTTTAATTTTCAA+AGG - chr1_1:60470152-60470171 None:intergenic 15.0%
!! TCTAAATAAATAGAAAAATC+AGG + chr1_1:60471614-60471633 Msa0033160:three_prime_UTR 15.0%
!!! AAGTTTGAAAATATTTTGAG+AGG + chr1_1:60463800-60463819 Msa0033160:five_prime_UTR 20.0%
!!! GTCTAAAATAATAAGAAGTA+TGG - chr1_1:60464989-60465008 None:intergenic 20.0%
!! TAAGTTATTTAAAAAGTTGG+TGG + chr1_1:60465082-60465101 Msa0033160:intron 20.0%
!! AGATAACATCGAAAAAATAT+AGG - chr1_1:60465868-60465887 None:intergenic 20.0%
!! TATAATTGTTCAGTAAACAT+TGG + chr1_1:60465906-60465925 Msa0033160:intron 20.0%
!! TAAAAATCAAAACAACAAAC+TGG - chr1_1:60466126-60466145 None:intergenic 20.0%
!! TTCTTTCCTAAAAGTAATAT+TGG + chr1_1:60466680-60466699 Msa0033160:intron 20.0%
!! TGGAAAATAATCATTCTATA+TGG + chr1_1:60466800-60466819 Msa0033160:intron 20.0%
!! AATTTAAGCTATAAACATGA+AGG - chr1_1:60467136-60467155 None:intergenic 20.0%
!! TTAAATGATGGTATAAAGAA+CGG + chr1_1:60467270-60467289 Msa0033160:intron 20.0%
!! AGAATAAAAAATGTTAATGC+CGG + chr1_1:60467617-60467636 Msa0033160:CDS 20.0%
!! AATTGTGAAAATTATAGTGT+TGG + chr1_1:60468040-60468059 Msa0033160:CDS 20.0%
!! ATTGTGAAAATTATAGTGTT+GGG + chr1_1:60468041-60468060 Msa0033160:CDS 20.0%
!!! GATAATTTTCATTCTAAACA+TGG + chr1_1:60468497-60468516 Msa0033160:intron 20.0%
!!! TGTGTTTAGGATTAATTTTT+AGG + chr1_1:60468590-60468609 Msa0033160:intron 20.0%
!! TAAATCATGTAAAAGTAAGA+TGG - chr1_1:60468865-60468884 None:intergenic 20.0%
!! TTGCTCAATAAAATTTAGAA+TGG + chr1_1:60469485-60469504 Msa0033160:intron 20.0%
!!! TGCTCAATAAAATTTAGAAT+GGG + chr1_1:60469486-60469505 Msa0033160:intron 20.0%
!!! TTCTTAAATTTTCATCATGA+GGG - chr1_1:60469579-60469598 None:intergenic 20.0%
!! AATATAACTGCTGAAATTAT+GGG + chr1_1:60469830-60469849 Msa0033160:three_prime_UTR 20.0%
!! AATGAATAAAGACTAGAATA+TGG + chr1_1:60469875-60469894 Msa0033160:three_prime_UTR 20.0%
!!! TTAGTATTCTTTAACTTTAG+GGG - chr1_1:60470273-60470292 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+GGG - chr1_1:60470274-60470293 None:intergenic 20.0%
!!! TTAGTATTCTTTAACTTTAG+GGG - chr1_1:60470273-60470292 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+GGG - chr1_1:60470274-60470293 None:intergenic 20.0%
!!! TTAGTATTCTTTAACTTTAC+GGG - chr1_1:60470835-60470854 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+CGG - chr1_1:60470274-60470293 None:intergenic 20.0%
!! AAACCAAACATAAATGATAT+TGG + chr1_1:60470997-60471016 Msa0033160:three_prime_UTR 20.0%
!! TCACTTCAAAAAATCATAAT+TGG + chr1_1:60471201-60471220 Msa0033160:three_prime_UTR 20.0%
!!! TTTTTTAAAGAAATGTTAGG+TGG + chr1_1:60471269-60471288 Msa0033160:three_prime_UTR 20.0%
!! TAAAACCTAAAACTTCAATA+TGG - chr1_1:60471484-60471503 None:intergenic 20.0%
!! AGAAAGAGATAAATAATAAG+AGG + chr1_1:60471510-60471529 Msa0033160:three_prime_UTR 20.0%
!! GAAAGAGATAAATAATAAGA+GGG + chr1_1:60471511-60471530 Msa0033160:three_prime_UTR 20.0%
!!! GTTTTCGTTAATTGTCATTT+AGG - chr1_1:60463858-60463877 None:intergenic 25.0%
! TATTGTTAATCAGAAACAAG+TGG - chr1_1:60464623-60464642 None:intergenic 25.0%
! ATTGCTATAAGTCTCATAAT+TGG + chr1_1:60464963-60464982 Msa0033160:intron 25.0%
!! ATTTCCTTTTGCAATATTTC+TGG + chr1_1:60466640-60466659 Msa0033160:intron 25.0%
!!! CTTTTAGGAAAGAAAATATC+TGG - chr1_1:60466674-60466693 None:intergenic 25.0%
! ATTTACATGAGATCATCTAT+TGG + chr1_1:60466716-60466735 Msa0033160:intron 25.0%
! CTTAAAAAATCCTTCTTCTA+TGG - chr1_1:60466752-60466771 None:intergenic 25.0%
!!! CATAGAAGAAGGATTTTTTA+AGG + chr1_1:60466750-60466769 Msa0033160:intron 25.0%
!!! TACTGTTACTAATTTTTTGC+AGG + chr1_1:60466836-60466855 Msa0033160:intron 25.0%
! AATATAAAGTTAACCTTCCT+AGG + chr1_1:60467200-60467219 Msa0033160:intron 25.0%
! TAAATGATGGTATAAAGAAC+GGG + chr1_1:60467271-60467290 Msa0033160:intron 25.0%
! AGAAAAAGAGGTTTCTATAT+CGG + chr1_1:60467967-60467986 Msa0033160:CDS 25.0%
!! ACAATCCTGATTAAGTTTTA+CGG - chr1_1:60468077-60468096 None:intergenic 25.0%
!! CTATTTCCTTCTCAATTTTT+AGG + chr1_1:60468231-60468250 Msa0033160:intron 25.0%
!! AAATGTGAACTTTTAACCAA+TGG + chr1_1:60468298-60468317 Msa0033160:CDS 25.0%
!! AATGTGAACTTTTAACCAAT+GGG + chr1_1:60468299-60468318 Msa0033160:CDS 25.0%
! TTAATATAAAACTTTCCCAG+TGG - chr1_1:60468466-60468485 None:intergenic 25.0%
! TAGAATGAAAATTATCTGAG+TGG - chr1_1:60468493-60468512 None:intergenic 25.0%
!! AGTTCTCAAAATTTTTGTAG+TGG + chr1_1:60468541-60468560 Msa0033160:intron 25.0%
! TTTGTAGTGGTGAATATATT+CGG + chr1_1:60468554-60468573 Msa0033160:intron 25.0%
!! ATTTCAACTAAAAAGTGCAA+AGG - chr1_1:60468640-60468659 None:intergenic 25.0%
!!! TGCACTTTTTAGTTGAAATA+TGG + chr1_1:60468641-60468660 Msa0033160:intron 25.0%
! AAGGAAAAGTGAATCTTTAA+AGG - chr1_1:60469452-60469471 None:intergenic 25.0%
!! TTTTATTGAGCAATAAACAG+AGG - chr1_1:60469478-60469497 None:intergenic 25.0%
!!! ATTTTTCAGGAACCATATTT+TGG + chr1_1:60469513-60469532 Msa0033160:intron 25.0%
!! GTTCTTAAATTTTCATCATG+AGG - chr1_1:60469580-60469599 None:intergenic 25.0%
!! GTAGAACATTTTCAATGAAT+TGG - chr1_1:60469617-60469636 None:intergenic 25.0%
! ATAATAAAAGCTTTCACACT+GGG - chr1_1:60469796-60469815 None:intergenic 25.0%
! TATAATAAAAGCTTTCACAC+TGG - chr1_1:60469797-60469816 None:intergenic 25.0%
! CAATATAACTGCTGAAATTA+TGG + chr1_1:60469829-60469848 Msa0033160:three_prime_UTR 25.0%
! ATATAACTGCTGAAATTATG+GGG + chr1_1:60469831-60469850 Msa0033160:three_prime_UTR 25.0%
!! ATATGTTTTCCTATTCAATC+AGG - chr1_1:60469976-60469995 None:intergenic 25.0%
!! GCTTAGTATTCTTTAACTTT+AGG - chr1_1:60470275-60470294 None:intergenic 25.0%
!! AAACATGCTCTTTGAAAATA+TGG + chr1_1:60470310-60470329 Msa0033160:intron 25.0%
!! ATATGTTTTCCTATTCAATC+AGG - chr1_1:60469976-60469995 None:intergenic 25.0%
!! GCTTAGTATTCTTTAACTTT+AGG - chr1_1:60470275-60470294 None:intergenic 25.0%
! AACATGTCAAATAACAACTT+GGG + chr1_1:60471095-60471114 Msa0033160:three_prime_UTR 25.0%
!! AGATACCATATTGAAGTTTT+AGG + chr1_1:60471476-60471495 Msa0033160:three_prime_UTR 25.0%
!!! GATTATAAACTGATTTTACG+AGG + chr1_1:60471706-60471725 Msa0033160:three_prime_UTR 25.0%
!!! TGTGATGATTTTGAGTTTTG+AGG - chr1_1:60463925-60463944 None:intergenic 30.0%
AATTTGACCTTTAACGAAGA+CGG - chr1_1:60463949-60463968 None:intergenic 30.0%
! TCATCTACACGATTTTCTAA+AGG - chr1_1:60464136-60464155 None:intergenic 30.0%
GAAATGAACTTGAAAGAAGA+AGG - chr1_1:60464206-60464225 None:intergenic 30.0%
! TGATATACACGTGAATTTTG+AGG + chr1_1:60464402-60464421 Msa0033160:intron 30.0%
!! GATGATGGAATAGTTAAACA+AGG + chr1_1:60464722-60464741 Msa0033160:intron 30.0%
AGTAAAGTAAGCAATCTCTA+AGG + chr1_1:60464764-60464783 Msa0033160:intron 30.0%
TAATATTACTTGCACTTGTG+TGG + chr1_1:60464807-60464826 Msa0033160:intron 30.0%
!! AAAGTTGGTGGATAAATCAA+AGG + chr1_1:60465094-60465113 Msa0033160:intron 30.0%
!! AAGTTGGTGGATAAATCAAA+GGG + chr1_1:60465095-60465114 Msa0033160:intron 30.0%
!! CTCTTAAGAAGCATTGATTA+TGG + chr1_1:60465218-60465237 Msa0033160:intron 30.0%
GTGAAGTTATTTATGAACTG+AGG + chr1_1:60465320-60465339 Msa0033160:intron 30.0%
!!! ACATCTATTTTTTGTCAAGC+AGG + chr1_1:60465357-60465376 Msa0033160:intron 30.0%
TGTGATAAATCAAAGATACC+TGG + chr1_1:60465616-60465635 Msa0033160:CDS 30.0%
TGTTCAGTAAACATTGGTAT+TGG + chr1_1:60465912-60465931 Msa0033160:intron 30.0%
TTATTGACGTAACTTATACC+TGG + chr1_1:60466100-60466119 Msa0033160:intron 30.0%
GACTTGTGTTTAACAACAAT+GGG - chr1_1:60466313-60466332 None:intergenic 30.0%
CTGATCAATCTTAGTGATAT+GGG + chr1_1:60466446-60466465 Msa0033160:CDS 30.0%
AAATTCTACAGAAACAGATG+CGG + chr1_1:60466568-60466587 Msa0033160:CDS 30.0%
!! CAGATGCCAATATTACTTTT+AGG - chr1_1:60466689-60466708 None:intergenic 30.0%
TAGATGATAGTTTATGTCAG+TGG + chr1_1:60466773-60466792 Msa0033160:intron 30.0%
GATGTTATTACCATGAATTG+AGG - chr1_1:60466970-60466989 None:intergenic 30.0%
TTCAAGACATCATTAGATGA+TGG - chr1_1:60467176-60467195 None:intergenic 30.0%
TTGTTGGTCAAACTTCTTTA+TGG + chr1_1:60467231-60467250 Msa0033160:intron 30.0%
GTCAAACTTCTTTATGGATT+TGG + chr1_1:60467237-60467256 Msa0033160:intron 30.0%
GGCAAGATATGTTTAAATGA+TGG + chr1_1:60467258-60467277 Msa0033160:intron 30.0%
CTCAATCATGTATGTTATAC+AGG + chr1_1:60467340-60467359 Msa0033160:intron 30.0%
! TTTTAGTCATTACAGTCAGT+GGG + chr1_1:60467379-60467398 Msa0033160:CDS 30.0%
AAAAATATGACAAGTTCCCT+TGG - chr1_1:60467420-60467439 None:intergenic 30.0%
AGTTCTTAAGATACACAATC+AGG + chr1_1:60467466-60467485 Msa0033160:CDS 30.0%
TAAAAAATGTTAATGCCGGA+TGG + chr1_1:60467621-60467640 Msa0033160:CDS 30.0%
AAATCTTCTTCTTGTATCTG+TGG - chr1_1:60467890-60467909 None:intergenic 30.0%
ATGTCTGTAGAAGATATGAT+TGG + chr1_1:60467942-60467961 Msa0033160:CDS 30.0%
ATATGATTGGCAAGAAAAAG+AGG + chr1_1:60467955-60467974 Msa0033160:CDS 30.0%
GAAAAAGAGGTTTCTATATC+GGG + chr1_1:60467968-60467987 Msa0033160:CDS 30.0%
AAAAAGAGGTTTCTATATCG+GGG + chr1_1:60467969-60467988 Msa0033160:CDS 30.0%
TGATTCCGTAAAACTTAATC+AGG + chr1_1:60468069-60468088 Msa0033160:CDS 30.0%
GAACATAATAATGTCGAGAA+AGG - chr1_1:60468200-60468219 None:intergenic 30.0%
AAGACACCTAAAAATTGAGA+AGG - chr1_1:60468240-60468259 None:intergenic 30.0%
! ATGTGAACTTTTAACCAATG+GGG + chr1_1:60468300-60468319 Msa0033160:CDS 30.0%
CTTATTTCAACCTCATTATC+AGG - chr1_1:60468346-60468365 None:intergenic 30.0%
! GAATTTTGTGGAAATGATCA+AGG - chr1_1:60468390-60468409 None:intergenic 30.0%
CAAAAACAAAAAGGCAGATA+AGG - chr1_1:60468441-60468460 None:intergenic 30.0%
!!! CTTATCTGCCTTTTTGTTTT+TGG + chr1_1:60468439-60468458 Msa0033160:intron 30.0%
!!! GATTAATTTTTAGGTGCACA+TGG + chr1_1:60468599-60468618 Msa0033160:intron 30.0%
AAAAGAAGTCAAGTGTAAAC+TGG - chr1_1:60468671-60468690 None:intergenic 30.0%
AAAGTAAGATGGAAATGCAT+AGG - chr1_1:60468854-60468873 None:intergenic 30.0%
GCAATGCAGTTATAATTAGT+AGG + chr1_1:60468941-60468960 Msa0033160:intron 30.0%
!!! TCGCAACATTTTGAAACTTA+GGG - chr1_1:60468986-60469005 None:intergenic 30.0%
!!! ATCGCAACATTTTGAAACTT+AGG - chr1_1:60468987-60469006 None:intergenic 30.0%
! GTTTCAAAATGTTGCGATTT+TGG + chr1_1:60468989-60469008 Msa0033160:intron 30.0%
TTTACAAATAGGTGCGATTA+TGG - chr1_1:60469095-60469114 None:intergenic 30.0%
GCACCTATTTGTAAAGATAA+GGG + chr1_1:60469100-60469119 Msa0033160:intron 30.0%
CACCTATTTGTAAAGATAAG+GGG + chr1_1:60469101-60469120 Msa0033160:intron 30.0%
AAGCATATTTCCCTTATGTT+AGG + chr1_1:60469129-60469148 Msa0033160:intron 30.0%
AGCATATTTCCCTTATGTTA+GGG + chr1_1:60469130-60469149 Msa0033160:intron 30.0%
AGAGTATATTTCCCTAAACA+TGG + chr1_1:60469160-60469179 Msa0033160:intron 30.0%
TATATTTCCCTAAACATGGA+GGG + chr1_1:60469164-60469183 Msa0033160:intron 30.0%
!! TGAATGTTAGGTTGATAACA+CGG + chr1_1:60469301-60469320 Msa0033160:intron 30.0%
AATGAACGAGAACCAAAATA+TGG - chr1_1:60469528-60469547 None:intergenic 30.0%
!! CTCGTTCATTTAATTTTGCA+AGG + chr1_1:60469538-60469557 Msa0033160:intron 30.0%
TGTTCTACAATAATTGTCAG+AGG + chr1_1:60469629-60469648 Msa0033160:intron 30.0%
TTTGTGGGAAAAACATATGT+TGG + chr1_1:60469758-60469777 Msa0033160:CDS 30.0%
TTTCCTATTCAATCAGGATT+AGG - chr1_1:60469970-60469989 None:intergenic 30.0%
TTTCCTATTCAATCAGGATT+AGG - chr1_1:60469970-60469989 None:intergenic 30.0%
GAACATGTCAAATAACAACT+TGG + chr1_1:60471094-60471113 Msa0033160:three_prime_UTR 30.0%
AAAAAAAATGTGCGCAAAAC+CGG + chr1_1:60471119-60471138 Msa0033160:three_prime_UTR 30.0%
GAATAATATGAGACTTGACA+CGG + chr1_1:60471436-60471455 Msa0033160:three_prime_UTR 30.0%
ACGACATTATCGAAAATGTG+TGG + chr1_1:60463829-60463848 Msa0033160:five_prime_UTR 35.0%
CGACATTATCGAAAATGTGT+GGG + chr1_1:60463830-60463849 Msa0033160:five_prime_UTR 35.0%
GACATTATCGAAAATGTGTG+GGG + chr1_1:60463831-60463850 Msa0033160:five_prime_UTR 35.0%
CATTTCGTCTTGCATTAAGA+CGG + chr1_1:60464220-60464239 Msa0033160:CDS 35.0%
!! AGCGAAAACTTGCTAAATCT+AGG + chr1_1:60464439-60464458 Msa0033160:intron 35.0%
CATGAACAACGTTTCTACAA+AGG - chr1_1:60464495-60464514 None:intergenic 35.0%
TCGAGTATGGAAAAGCTATT+TGG + chr1_1:60464833-60464852 Msa0033160:intron 35.0%
AACCAGTCTCACATTAATTC+TGG - chr1_1:60465011-60465030 None:intergenic 35.0%
ACTTACTTAACTCCCTAAAG+AGG - chr1_1:60465067-60465086 None:intergenic 35.0%
AATCAAAGGGTGAGATTAAG+TGG + chr1_1:60465108-60465127 Msa0033160:intron 35.0%
ACGTCATGTAATTGTCAATG+TGG + chr1_1:60465163-60465182 Msa0033160:intron 35.0%
!! GTTATAGAGTACTGCATATG+TGG + chr1_1:60465193-60465212 Msa0033160:intron 35.0%
!!! TTTTGTGCAATAGAGTACTG+TGG + chr1_1:60465298-60465317 Msa0033160:intron 35.0%
ATCGAGAACTTGAAATCCAT+TGG - chr1_1:60465455-60465474 None:intergenic 35.0%
TGCATCTGTAAAAACGAAAC+TGG - chr1_1:60465526-60465545 None:intergenic 35.0%
CTGTTAGATTCTACTCACTA+AGG + chr1_1:60465707-60465726 Msa0033160:CDS 35.0%
TAGAGCATGAACATAGGTAT+GGG - chr1_1:60465734-60465753 None:intergenic 35.0%
TTAGAGCATGAACATAGGTA+TGG - chr1_1:60465735-60465754 None:intergenic 35.0%
GAATCTTAGAGCATGAACAT+AGG - chr1_1:60465740-60465759 None:intergenic 35.0%
TAACCATGTAGACAGTTGAA+CGG - chr1_1:60465762-60465781 None:intergenic 35.0%
GTTTACCAATTTCCTCCATT+GGG + chr1_1:60465934-60465953 Msa0033160:intron 35.0%
! GCTTAGTGTAACAAGTTTTC+AGG + chr1_1:60465995-60466014 Msa0033160:intron 35.0%
GAACATGTAAGTGATCCATT+TGG - chr1_1:60466040-60466059 None:intergenic 35.0%
AACTAAGACACTGTTCGTTA+TGG - chr1_1:60466078-60466097 None:intergenic 35.0%
!! GTTTAACAACAATGGGTTGT+TGG - chr1_1:60466306-60466325 None:intergenic 35.0%
CGACTTGTGTTTAACAACAA+TGG - chr1_1:60466314-60466333 None:intergenic 35.0%
TGCTAGATTCCATAGCATAT+CGG - chr1_1:60466409-60466428 None:intergenic 35.0%
TATGGAATCTAGCAAGCATT+TGG + chr1_1:60466415-60466434 Msa0033160:CDS 35.0%
GCTGATCAATCTTAGTGATA+TGG + chr1_1:60466445-60466464 Msa0033160:CDS 35.0%
TATCAAGATCTAATGCCTGA+TGG + chr1_1:60466491-60466510 Msa0033160:CDS 35.0%
CTGTCCAGAAATATTGCAAA+AGG - chr1_1:60466647-60466666 None:intergenic 35.0%
!!! TTTTTTGCAGGTTGTTGTCA+AGG + chr1_1:60466848-60466867 Msa0033160:intron 35.0%
!!! CAAGGATTTTGTTTCTAGAG+CGG + chr1_1:60466866-60466885 Msa0033160:CDS 35.0%
TCAAAACATAGCGCAGATAT+AGG - chr1_1:60466921-60466940 None:intergenic 35.0%
TTCCTACTCAAAGAAAGGAT+CGG + chr1_1:60467010-60467029 Msa0033160:CDS 35.0%
TGCTATTCTCCGTTTCTTTA+AGG + chr1_1:60467110-60467129 Msa0033160:intron 35.0%
ACATGAAGGCCTTAAAGAAA+CGG - chr1_1:60467122-60467141 None:intergenic 35.0%
!! GTTTTAGTCATTACAGTCAG+TGG + chr1_1:60467378-60467397 Msa0033160:CDS 35.0%
! ATTTTTGTCCTTTCCCCTTT+TGG + chr1_1:60467434-60467453 Msa0033160:CDS 35.0%
!! TGCTGGTTTACAGTAAAATG+TGG - chr1_1:60467545-60467564 None:intergenic 35.0%
TACTGAATTAAGTGACCAGA+AGG - chr1_1:60467800-60467819 None:intergenic 35.0%
TAACCTACTATCGTCATTGA+TGG + chr1_1:60467820-60467839 Msa0033160:CDS 35.0%
GTTCTTGAAGCAGTTTCATT+TGG - chr1_1:60467851-60467870 None:intergenic 35.0%
AGAAGATTTACGAGTGAAAG+TGG + chr1_1:60467901-60467920 Msa0033160:CDS 35.0%
GGAAACTGCTGAAATGATAT+TGG + chr1_1:60468009-60468028 Msa0033160:CDS 35.0%
TTAGGTGTCTTTCTTTGTGA+TGG + chr1_1:60468249-60468268 Msa0033160:intron 35.0%
TAGGTGTCTTTCTTTGTGAT+GGG + chr1_1:60468250-60468269 Msa0033160:intron 35.0%
! AGAGGATATTCCTGATAATG+AGG + chr1_1:60468333-60468352 Msa0033160:CDS 35.0%
TGAGGTTGAAATAAGACAGA+AGG + chr1_1:60468351-60468370 Msa0033160:CDS 35.0%
TTTGTGGAAATGATCAAGGA+CGG - chr1_1:60468386-60468405 None:intergenic 35.0%
!!! CTTTTTGTTTTTGGTCCACT+GGG + chr1_1:60468448-60468467 Msa0033160:intron 35.0%
AATCCTAAACACATACGAAG+AGG - chr1_1:60468583-60468602 None:intergenic 35.0%
! ACTTGACTTCTTTTGTTGCT+AGG + chr1_1:60468677-60468696 Msa0033160:intron 35.0%
GATCTTCTTTATGCTCTACA+TGG + chr1_1:60468732-60468751 Msa0033160:intron 35.0%
! ATGGGAGTTTTACGTTGTTA+CGG + chr1_1:60468799-60468818 Msa0033160:intron 35.0%
!!! GCAACATTTTGAAACTTAGG+GGG - chr1_1:60468984-60469003 None:intergenic 35.0%
!!! CGCAACATTTTGAAACTTAG+GGG - chr1_1:60468985-60469004 None:intergenic 35.0%
!!! TCAGCAATTTTGAAACGCAA+GGG - chr1_1:60469044-60469063 None:intergenic 35.0%
CGCACCTATTTGTAAAGATA+AGG + chr1_1:60469099-60469118 Msa0033160:intron 35.0%
GACCCCTTATCTTTACAAAT+AGG - chr1_1:60469106-60469125 None:intergenic 35.0%
GCATATTTCCCTTATGTTAG+GGG + chr1_1:60469131-60469150 Msa0033160:intron 35.0%
CATATTTCCCTTATGTTAGG+GGG + chr1_1:60469132-60469151 Msa0033160:intron 35.0%
! CTTTTAACCCCCTAACATAA+GGG - chr1_1:60469142-60469161 None:intergenic 35.0%
! TCTTTTAACCCCCTAACATA+AGG - chr1_1:60469143-60469162 None:intergenic 35.0%
GTATATTTCCCTAAACATGG+AGG + chr1_1:60469163-60469182 Msa0033160:intron 35.0%
! CTTTGACAATGTTGCGATTT+TGG - chr1_1:60469218-60469237 None:intergenic 35.0%
ATCGCAACATTGTCAAAGTT+AGG + chr1_1:60469220-60469239 Msa0033160:intron 35.0%
TCGCAACATTGTCAAAGTTA+GGG + chr1_1:60469221-60469240 Msa0033160:intron 35.0%
TTCCACGAATACTAAATCCA+CGG - chr1_1:60469351-60469370 None:intergenic 35.0%
GTGTGTGTGTCTAATATGAA+TGG + chr1_1:60469401-60469420 Msa0033160:intron 35.0%
GAATGGTTTCTTAGTGTTAG+TGG + chr1_1:60469418-60469437 Msa0033160:intron 35.0%
! TAGAATGGGTGTGATTTTTC+AGG + chr1_1:60469500-60469519 Msa0033160:intron 35.0%
!!! AATTGTCAGAGGCATTGTTT+TGG + chr1_1:60469640-60469659 Msa0033160:intron 35.0%
!!! ATTGTCAGAGGCATTGTTTT+GGG + chr1_1:60469641-60469660 Msa0033160:intron 35.0%
!!! ATGGGGTTTTAGATAATGAG+AGG + chr1_1:60469848-60469867 Msa0033160:three_prime_UTR 35.0%
TAGCACTTACCCCTATTTAT+AGG + chr1_1:60469929-60469948 Msa0033160:three_prime_UTR 35.0%
AGCACTTACCCCTATTTATA+GGG + chr1_1:60469930-60469949 Msa0033160:three_prime_UTR 35.0%
TTACCCCTATTTATAGGGAT+GGG + chr1_1:60469935-60469954 Msa0033160:three_prime_UTR 35.0%
AGTACCCATCCCTATAAATA+GGG - chr1_1:60469942-60469961 None:intergenic 35.0%
ACTCCTAATCCTGATTGAAT+AGG + chr1_1:60469964-60469983 Msa0033160:three_prime_UTR 35.0%
ATTATCTTGCACTTGCAGTT+TGG - chr1_1:60470210-60470229 None:intergenic 35.0%
AGTACCCATCCCTATAAATA+GGG - chr1_1:60469942-60469961 None:intergenic 35.0%
ACTCCTAATCCTGATTGAAT+AGG + chr1_1:60469964-60469983 Msa0033160:three_prime_UTR 35.0%
ATTATCTTGCACTTGCAGTT+TGG - chr1_1:60470210-60470229 None:intergenic 35.0%
! GTTCATGAAACTTGTGGTTT+TGG - chr1_1:60470904-60470923 None:intergenic 35.0%
!! ATGTAAGTGCTGGCTTAATA+TGG - chr1_1:60470949-60470968 None:intergenic 35.0%
CGGCCAATATCATTTATGTT+TGG - chr1_1:60471003-60471022 None:intergenic 35.0%
!! TTGTTTCTGCTTGTTTAGTC+CGG - chr1_1:60471141-60471160 None:intergenic 35.0%
AAACAAGCAGAAACAACGAT+AGG + chr1_1:60471145-60471164 Msa0033160:three_prime_UTR 35.0%
AACAAGCAGAAACAACGATA+GGG + chr1_1:60471146-60471165 Msa0033160:three_prime_UTR 35.0%
AAATCATAATTGGCAGCTTC+TGG + chr1_1:60471211-60471230 Msa0033160:three_prime_UTR 35.0%
TGTTTGACAAAAATGAGCAG+AGG + chr1_1:60471365-60471384 Msa0033160:three_prime_UTR 35.0%
AAGTACAATCCCAAACTTTC+AGG + chr1_1:60471401-60471420 Msa0033160:three_prime_UTR 35.0%
ATCACAACCGTCTTCGTTAA+AGG + chr1_1:60463939-60463958 Msa0033160:five_prime_UTR 40.0%
!! TTCGGTTATTTGAGTTGTGG+TGG - chr1_1:60463980-60463999 None:intergenic 40.0%
!! GTGTTCGGTTATTTGAGTTG+TGG - chr1_1:60463983-60464002 None:intergenic 40.0%
CGATAAAAAACGACGGTGTT+CGG - chr1_1:60463998-60464017 None:intergenic 40.0%
TGCATAAGAGTTGAAGACGA+CGG - chr1_1:60464040-60464059 None:intergenic 40.0%
ATCGTGTAGATGAAGAAGCA+AGG + chr1_1:60464143-60464162 Msa0033160:exon 40.0%
TCGTGTAGATGAAGAAGCAA+GGG + chr1_1:60464144-60464163 Msa0033160:exon 40.0%
AACAACGTTTCCAAGAGCAA+TGG + chr1_1:60464173-60464192 Msa0033160:CDS 40.0%
TGCTACCTGATCTTTACGAT+CGG - chr1_1:60464306-60464325 None:intergenic 40.0%
GACATCGCATTAATTCTGGT+CGG - chr1_1:60464699-60464718 None:intergenic 40.0%
GACCAGAATTAATGCGATGT+CGG + chr1_1:60464698-60464717 Msa0033160:intron 40.0%
TTTACTCTCTCAAGAGGAGT+TGG - chr1_1:60464750-60464769 None:intergenic 40.0%
GCTTACTTTACTCTCTCAAG+AGG - chr1_1:60464756-60464775 None:intergenic 40.0%
! TTCGTGTTTTCCGACAAAAG+CGG + chr1_1:60464928-60464947 Msa0033160:intron 40.0%
!! TATACGAGTACCGCTTTTGT+CGG - chr1_1:60464941-60464960 None:intergenic 40.0%
GACCAGAATTAATGTGAGAC+TGG + chr1_1:60465006-60465025 Msa0033160:intron 40.0%
!! GAGACTGGTTTGTTTGATGA+TGG + chr1_1:60465021-60465040 Msa0033160:intron 40.0%
AGACAATCCAACTCCTCTTT+AGG + chr1_1:60465051-60465070 Msa0033160:intron 40.0%
GACAATCCAACTCCTCTTTA+GGG + chr1_1:60465052-60465071 Msa0033160:intron 40.0%
TTAACTCCCTAAAGAGGAGT+TGG - chr1_1:60465061-60465080 None:intergenic 40.0%
TAAGTGGAATTGCATGACAG+TGG + chr1_1:60465124-60465143 Msa0033160:intron 40.0%
! TTTTTGTCAAGCAGGTGCTT+TGG + chr1_1:60465365-60465384 Msa0033160:intron 40.0%
! TTTTGTCAAGCAGGTGCTTT+GGG + chr1_1:60465366-60465385 Msa0033160:intron 40.0%
TTCAAACGTGTACTCCTACT+CGG + chr1_1:60465424-60465443 Msa0033160:CDS 40.0%
ATCCATTGGAATAACCGAGT+AGG - chr1_1:60465441-60465460 None:intergenic 40.0%
!! TGGATTTCAAGTTCTCGATG+TGG + chr1_1:60465456-60465475 Msa0033160:CDS 40.0%
TGGAAGATGCCTCTAATATC+AGG + chr1_1:60465476-60465495 Msa0033160:CDS 40.0%
GGAAGATGCCTCTAATATCA+GGG + chr1_1:60465477-60465496 Msa0033160:CDS 40.0%
GACAAGTTCCCTGATATTAG+AGG - chr1_1:60465488-60465507 None:intergenic 40.0%
AGCATCACATCCTTTACTCT+TGG + chr1_1:60465585-60465604 Msa0033160:CDS 40.0%
CATGCAACAACCAAGAGTAA+AGG - chr1_1:60465598-60465617 None:intergenic 40.0%
ACAGTGCAAAATGTCAGAGA+TGG + chr1_1:60465640-60465659 Msa0033160:CDS 40.0%
ATTCCGTTCAACTGTCTACA+TGG + chr1_1:60465756-60465775 Msa0033160:CDS 40.0%
GGTTTACCAATTTCCTCCAT+TGG + chr1_1:60465933-60465952 Msa0033160:intron 40.0%
TGATACTTCATGAGGCCAAA+TGG + chr1_1:60466022-60466041 Msa0033160:intron 40.0%
ATCAAAACAACAAACTGGCC+AGG - chr1_1:60466121-60466140 None:intergenic 40.0%
GGAATGGTTGGGGTTAATAT+TGG + chr1_1:60466236-60466255 Msa0033160:CDS 40.0%
! GTTGGGGTTAATATTGGCTA+TGG + chr1_1:60466242-60466261 Msa0033160:CDS 40.0%
! TAATATTGGCTATGGTCCGA+TGG + chr1_1:60466250-60466269 Msa0033160:CDS 40.0%
!! TAACAACAATGGGTTGTTGG+AGG - chr1_1:60466303-60466322 None:intergenic 40.0%
GCTAGATTCCATAGCATATC+GGG - chr1_1:60466408-60466427 None:intergenic 40.0%
CTAACTTTCCAGCCTGAATT+CGG - chr1_1:60466536-60466555 None:intergenic 40.0%
TTCAGCTTAGCCATAGAAGA+AGG + chr1_1:60466739-60466758 Msa0033160:intron 40.0%
TAGTTTATGTCAGTGGCAAC+TGG + chr1_1:60466780-60466799 Msa0033160:intron 40.0%
!!! TTTTGTTTCTAGAGCGGTTG+TGG + chr1_1:60466872-60466891 Msa0033160:CDS 40.0%
! CGCAGATATAGGACTAGTAT+GGG - chr1_1:60466910-60466929 None:intergenic 40.0%
CTAGTTACAGCCTCAATTCA+TGG + chr1_1:60466957-60466976 Msa0033160:CDS 40.0%
ATGCCTTCCTACTCAAAGAA+AGG + chr1_1:60467005-60467024 Msa0033160:CDS 40.0%
GATCCTTTCTTTGAGTAGGA+AGG - chr1_1:60467011-60467030 None:intergenic 40.0%
TCCTACTCAAAGAAAGGATC+GGG + chr1_1:60467011-60467030 Msa0033160:CDS 40.0%
AAGTTAACCTTCCTAGGTAG+TGG + chr1_1:60467206-60467225 Msa0033160:intron 40.0%
AACAAAACCACTACCTAGGA+AGG - chr1_1:60467216-60467235 None:intergenic 40.0%
!!! TTCCTAGGTAGTGGTTTTGT+TGG + chr1_1:60467215-60467234 Msa0033160:intron 40.0%
AATATGACAAGTTCCCTTGG+AGG - chr1_1:60467417-60467436 None:intergenic 40.0%
ATACACAATCAGGACACAGA+AGG + chr1_1:60467476-60467495 Msa0033160:CDS 40.0%
AGAAAGAAAAGCAGGAGGTT+GGG - chr1_1:60467588-60467607 None:intergenic 40.0%
CTAACCACAGAAAGAAAAGC+AGG - chr1_1:60467596-60467615 None:intergenic 40.0%
TAATGCCGGATGGCTTAATA+CGG + chr1_1:60467631-60467650 Msa0033160:CDS 40.0%
ACTAACCGTATTAAGCCATC+CGG - chr1_1:60467639-60467658 None:intergenic 40.0%
AATGTTTCATCTTCTGCAGC+AGG + chr1_1:60467659-60467678 Msa0033160:CDS 40.0%
ATGTTTCATCTTCTGCAGCA+GGG + chr1_1:60467660-60467679 Msa0033160:CDS 40.0%
ATACGCAAAAGTTCATGCCA+TGG + chr1_1:60467754-60467773 Msa0033160:CDS 40.0%
ATAAACCAGCAAGTGTTCCA+TGG - chr1_1:60467774-60467793 None:intergenic 40.0%
!! TTGCTGGTTTATACTCCTTC+TGG + chr1_1:60467782-60467801 Msa0033160:CDS 40.0%
TCTTCTTGTATCTGTGGTGA+AGG - chr1_1:60467884-60467903 None:intergenic 40.0%
TGAAAGTGGAACCTGTTCAA+TGG + chr1_1:60467915-60467934 Msa0033160:CDS 40.0%
ACCAATTTGGCAGAAATCTG+AGG + chr1_1:60468138-60468157 Msa0033160:CDS 40.0%
ACCTCAGATTTCTGCCAAAT+TGG - chr1_1:60468142-60468161 None:intergenic 40.0%
CTCTATTTCAATCTCCCCAT+TGG - chr1_1:60468317-60468336 None:intergenic 40.0%
CAATGGGGAGATTGAAATAG+AGG + chr1_1:60468315-60468334 Msa0033160:CDS 40.0%
TTGTGGAAATGATCAAGGAC+GGG - chr1_1:60468385-60468404 None:intergenic 40.0%
TCCACAAAATTCAGTCCACT+TGG + chr1_1:60468398-60468417 Msa0033160:CDS 40.0%
CCACAAAATTCAGTCCACTT+GGG + chr1_1:60468399-60468418 Msa0033160:CDS 40.0%
CACAAAATTCAGTCCACTTG+GGG + chr1_1:60468400-60468419 Msa0033160:CDS 40.0%
CCAGTGGACCAAAAACAAAA+AGG - chr1_1:60468450-60468469 None:intergenic 40.0%
!!! CCTTTTTGTTTTTGGTCCAC+TGG + chr1_1:60468447-60468466 Msa0033160:intron 40.0%
ACACCTCTTCGTATGTGTTT+AGG + chr1_1:60468577-60468596 Msa0033160:intron 40.0%
TGCAAAGGATGTAGAACGTA+AGG - chr1_1:60468625-60468644 None:intergenic 40.0%
TTCGTGAATCTGCATTTCGT+AGG - chr1_1:60468907-60468926 None:intergenic 40.0%
!!! CAGCAATTTTGAAACGCAAG+GGG - chr1_1:60469043-60469062 None:intergenic 40.0%
!!! CTCAGCAATTTTGAAACGCA+AGG - chr1_1:60469045-60469064 None:intergenic 40.0%
AAAGTGACCCTCCATGTTTA+GGG - chr1_1:60469174-60469193 None:intergenic 40.0%
AAAAGTGACCCTCCATGTTT+AGG - chr1_1:60469175-60469194 None:intergenic 40.0%
CGCAACATTGTCAAAGTTAG+GGG + chr1_1:60469222-60469241 Msa0033160:intron 40.0%
GCAACATTGTCAAAGTTAGG+GGG + chr1_1:60469223-60469242 Msa0033160:intron 40.0%
!! ATGTTAGGTTGATAACACGG+TGG + chr1_1:60469304-60469323 Msa0033160:intron 40.0%
!!! AGTGCTTTTCTTGTTTTCCG+TGG + chr1_1:60469331-60469350 Msa0033160:intron 40.0%
TTCCGTGGATTTAGTATTCG+TGG + chr1_1:60469346-60469365 Msa0033160:intron 40.0%
GAGCAATAAACAGAGGAACA+AGG - chr1_1:60469471-60469490 None:intergenic 40.0%
AGGTACAGTTAACTTCGGAT+GGG - chr1_1:60469735-60469754 None:intergenic 40.0%
AAGCCAGGTACAGTTAACTT+CGG - chr1_1:60469740-60469759 None:intergenic 40.0%
!! TTAACTGTACCTGGCTTTGT+GGG + chr1_1:60469743-60469762 Msa0033160:CDS 40.0%
! TATGTTTTTCCCACAAAGCC+AGG - chr1_1:60469755-60469774 None:intergenic 40.0%
CTTACCCCTATTTATAGGGA+TGG + chr1_1:60469934-60469953 Msa0033160:three_prime_UTR 40.0%
GTACCCATCCCTATAAATAG+GGG - chr1_1:60469941-60469960 None:intergenic 40.0%
CAGTACCCATCCCTATAAAT+AGG - chr1_1:60469943-60469962 None:intergenic 40.0%
CTATTTATAGGGATGGGTAC+TGG + chr1_1:60469941-60469960 Msa0033160:three_prime_UTR 40.0%
CATGAGAGTTATTGCAGTTC+AGG - chr1_1:60470174-60470193 None:intergenic 40.0%
TAGCACTTGCCCCTATTTAT+AGG + chr1_1:60470364-60470383 Msa0033160:intron 40.0%
AGCACTTGCCCCTATTTATA+GGG + chr1_1:60470365-60470384 Msa0033160:intron 40.0%
TTGCCCCTATTTATAGGGAT+GGG + chr1_1:60470370-60470389 Msa0033160:intron 40.0%
GTACCCATCCCTATAAATAG+GGG - chr1_1:60469941-60469960 None:intergenic 40.0%
CAGTACCCATCCCTATAAAT+AGG - chr1_1:60469943-60469962 None:intergenic 40.0%
CTATTTATAGGGATGGGTAC+TGG + chr1_1:60469941-60469960 Msa0033160:three_prime_UTR 40.0%
CATGAGAGTTATTGCAGTTC+AGG - chr1_1:60470174-60470193 None:intergenic 40.0%
! ATGCTCTTTGAAAGAGAGAC+AGG + chr1_1:60470749-60470768 Msa0033160:three_prime_UTR 40.0%
CCTGTTGTTCATGAAACTTG+TGG - chr1_1:60470910-60470929 None:intergenic 40.0%
CCACAAGTTTCATGAACAAC+AGG + chr1_1:60470907-60470926 Msa0033160:three_prime_UTR 40.0%
ACAAGCAGAAACAACGATAG+GGG + chr1_1:60471147-60471166 Msa0033160:three_prime_UTR 40.0%
AACGATAGGGGTAGAAGAAT+AGG + chr1_1:60471159-60471178 Msa0033160:three_prime_UTR 40.0%
AAATGTTAGGTGGCAGCATA+CGG + chr1_1:60471279-60471298 Msa0033160:three_prime_UTR 40.0%
TGTCGAGTTCCTGAAAGTTT+GGG - chr1_1:60471413-60471432 None:intergenic 40.0%
TAATATGAGACTTGACACGG+AGG + chr1_1:60471439-60471458 Msa0033160:three_prime_UTR 40.0%
ACCAAAGCATAGCAGAATCG+CGG + chr1_1:60463894-60463913 Msa0033160:five_prime_UTR 45.0%
!! GATTTTCTAAAGGCCACCAC+CGG - chr1_1:60464126-60464145 None:intergenic 45.0%
AGGAACGAATCCATTGCTCT+TGG - chr1_1:60464186-60464205 None:intergenic 45.0%
TGGAACCGATCGTAAAGATC+AGG + chr1_1:60464298-60464317 Msa0033160:CDS 45.0%
CACCGACATCGCATTAATTC+TGG - chr1_1:60464703-60464722 None:intergenic 45.0%
TAATGCGATGTCGGTGATGA+TGG + chr1_1:60464707-60464726 Msa0033160:intron 45.0%
ACTTGTGTGGCAATCGAGTA+TGG + chr1_1:60464820-60464839 Msa0033160:intron 45.0%
GAATGATGCGTGAAGACAGT+TGG + chr1_1:60464875-60464894 Msa0033160:intron 45.0%
TTGTCGGAAAACACGAAGGT+GGG - chr1_1:60464925-60464944 None:intergenic 45.0%
TTTGTCGGAAAACACGAAGG+TGG - chr1_1:60464926-60464945 None:intergenic 45.0%
! GCTTTTGTCGGAAAACACGA+AGG - chr1_1:60464929-60464948 None:intergenic 45.0%
CTCCTACTCGGTTATTCCAA+TGG + chr1_1:60465436-60465455 Msa0033160:CDS 45.0%
! CTGACATTTTGCACTGTACC+AGG - chr1_1:60465637-60465656 None:intergenic 45.0%
AGTCCTCAAATAGTCGCTGT+GGG + chr1_1:60465787-60465806 Msa0033160:CDS 45.0%
AGCTACCCAATGGAGGAAAT+TGG - chr1_1:60465942-60465961 None:intergenic 45.0%
CAGGACACTGATACTTCATG+AGG + chr1_1:60466014-60466033 Msa0033160:intron 45.0%
ACTTATCCTGTGCCTCAGTT+GGG + chr1_1:60466206-60466225 Msa0033160:CDS 45.0%
! TCTAGCAAGCATTTGGCTTC+TGG + chr1_1:60466422-60466441 Msa0033160:CDS 45.0%
! CTAGCAAGCATTTGGCTTCT+GGG + chr1_1:60466423-60466442 Msa0033160:CDS 45.0%
! AGCCTGAATTCGGTGATACA+GGG - chr1_1:60466526-60466545 None:intergenic 45.0%
AGCGGTTGTGGCACAATTTA+GGG + chr1_1:60466884-60466903 Msa0033160:CDS 45.0%
! GCGCAGATATAGGACTAGTA+TGG - chr1_1:60466911-60466930 None:intergenic 45.0%
!!! GCGCTATGTTTTGATCAGAG+TGG + chr1_1:60466927-60466946 Msa0033160:CDS 45.0%
ACCCGATCCTTTCTTTGAGT+AGG - chr1_1:60467015-60467034 None:intergenic 45.0%
CGGGTTCTCAAAGCAATGAT+TGG + chr1_1:60467030-60467049 Msa0033160:CDS 45.0%
GACCAACAAAACCACTACCT+AGG - chr1_1:60467220-60467239 None:intergenic 45.0%
! GTTGCTGTCATTTCCTCCAA+GGG + chr1_1:60467401-60467420 Msa0033160:CDS 45.0%
! TTTGTCCTTTCCCCTTTTGG+TGG + chr1_1:60467437-60467456 Msa0033160:CDS 45.0%
AACTGTCTCACCACCAAAAG+GGG - chr1_1:60467450-60467469 None:intergenic 45.0%
GAACTGTCTCACCACCAAAA+GGG - chr1_1:60467451-60467470 None:intergenic 45.0%
AGAACTGTCTCACCACCAAA+AGG - chr1_1:60467452-60467471 None:intergenic 45.0%
! AGAAGGACCTGTTCTTTTGC+CGG + chr1_1:60467493-60467512 Msa0033160:CDS 45.0%
GGAAAAACCGGCAAAAGAAC+AGG - chr1_1:60467503-60467522 None:intergenic 45.0%
CACCATGGTAGAGGAAAAAC+CGG - chr1_1:60467515-60467534 None:intergenic 45.0%
AAATGTGGAGTGAACCACCA+TGG - chr1_1:60467530-60467549 None:intergenic 45.0%
GAAAGAAAAGCAGGAGGTTG+GGG - chr1_1:60467587-60467606 None:intergenic 45.0%
CAGAAAGAAAAGCAGGAGGT+TGG - chr1_1:60467589-60467608 None:intergenic 45.0%
!! ACCTCCTGCTTTTCTTTCTG+TGG + chr1_1:60467589-60467608 Msa0033160:CDS 45.0%
ACCACAGAAAGAAAAGCAGG+AGG - chr1_1:60467593-60467612 None:intergenic 45.0%
TATGCATTGTGCGAATCAGG+AGG - chr1_1:60467737-60467756 None:intergenic 45.0%
CTGCCATCAATGACGATAGT+AGG - chr1_1:60467826-60467845 None:intergenic 45.0%
AAGTGGAACCTGTTCAATGG+TGG + chr1_1:60467918-60467937 Msa0033160:CDS 45.0%
AGTGGAACCTGTTCAATGGT+GGG + chr1_1:60467919-60467938 Msa0033160:CDS 45.0%
TTGTCACGTCTCAAATGCAG+AGG + chr1_1:60468093-60468112 Msa0033160:CDS 45.0%
! GCAGAGGTGCATATAAACTC+CGG + chr1_1:60468109-60468128 Msa0033160:CDS 45.0%
! CAGAGGTGCATATAAACTCC+GGG + chr1_1:60468110-60468129 Msa0033160:CDS 45.0%
!!! CCCAAGTGGACTGAATTTTG+TGG - chr1_1:60468402-60468421 None:intergenic 45.0%
! GTTTTACGTTGTTACGGCCA+AGG + chr1_1:60468805-60468824 Msa0033160:intron 45.0%
AACTGCATTGCACTGTATCG+TGG - chr1_1:60468932-60468951 None:intergenic 45.0%
!!! GCGATTATGGCCCCTTTTTT+GGG - chr1_1:60469082-60469101 None:intergenic 45.0%
!!! TGCGATTATGGCCCCTTTTT+TGG - chr1_1:60469083-60469102 None:intergenic 45.0%
CAGGTACAGTTAACTTCGGA+TGG - chr1_1:60469736-60469755 None:intergenic 45.0%
CATCCGAAGTTAACTGTACC+TGG + chr1_1:60469734-60469753 Msa0033160:CDS 45.0%
!! GTTAACTGTACCTGGCTTTG+TGG + chr1_1:60469742-60469761 Msa0033160:CDS 45.0%
CTTGCCCCTATTTATAGGGA+TGG + chr1_1:60470369-60470388 Msa0033160:intron 45.0%
AATCGTTCCAGCTAGGTCTT+TGG - chr1_1:60470975-60470994 None:intergenic 45.0%
! GGTTTGAAATCGTTCCAGCT+AGG - chr1_1:60470982-60471001 None:intergenic 45.0%
GATAGGGGTAGAAGAATAGG+AGG + chr1_1:60471162-60471181 Msa0033160:three_prime_UTR 45.0%
GACAAAAATGAGCAGAGGTC+TGG + chr1_1:60471370-60471389 Msa0033160:three_prime_UTR 45.0%
CTGTCGAGTTCCTGAAAGTT+TGG - chr1_1:60471414-60471433 None:intergenic 45.0%
TTCAATATGGTATCTGCGCC+AGG - chr1_1:60471471-60471490 None:intergenic 45.0%
!!! TTATTTTTTTTGAATTTTTT+CGG + chr1_1:60464327-60464346 Msa0033160:intron 5.0%
!!! TTGAATTAAATATTTAATTT+AGG + chr1_1:60464560-60464579 Msa0033160:intron 5.0%
!!! ATTTTAATTTTTTTTAATAG+GGG - chr1_1:60469016-60469035 None:intergenic 5.0%
!!! ACTTTTTAATTTTTTTTAAT+AGG + chr1_1:60469189-60469208 Msa0033160:intron 5.0%
!!! CTTTTTAATTTTTTTTAATA+GGG + chr1_1:60469190-60469209 Msa0033160:intron 5.0%
!!! TTTTTAATTTTTTTTAATAG+GGG + chr1_1:60469191-60469210 Msa0033160:intron 5.0%
!! ATATTAAAATAATACTAATT+AGG - chr1_1:60469266-60469285 None:intergenic 5.0%
ACGGCGGCGATAAAAAACGA+CGG - chr1_1:60464005-60464024 None:intergenic 50.0%
!!! TTTTTTATCGCCGCCGTGCA+CGG + chr1_1:60464008-60464027 Msa0033160:five_prime_UTR 50.0%
AGAGTTGAAGACGACGGAGT+TGG - chr1_1:60464034-60464053 None:intergenic 50.0%
TGCATTAAGACGGCTTCCTC+CGG + chr1_1:60464230-60464249 Msa0033160:CDS 50.0%
! TTTACGATCGGTTCCATCGC+CGG - chr1_1:60464294-60464313 None:intergenic 50.0%
! TGCTTTGGGCTTGCTTTGAC+AGG + chr1_1:60465380-60465399 Msa0033160:CDS 50.0%
TGCTTTGACAGGCTAGAGCT+CGG + chr1_1:60465391-60465410 Msa0033160:CDS 50.0%
TTTCAGCCTGAGCTTCGTTG+TGG - chr1_1:60465666-60465685 None:intergenic 50.0%
CAGTCCTCAAATAGTCGCTG+TGG + chr1_1:60465786-60465805 Msa0033160:CDS 50.0%
AGACCCACAGCGACTATTTG+AGG - chr1_1:60465793-60465812 None:intergenic 50.0%
CACTTATCCTGTGCCTCAGT+TGG + chr1_1:60466205-60466224 Msa0033160:CDS 50.0%
!! CGCTGCTTGGTGATGTTGAT+GGG - chr1_1:60466373-60466392 None:intergenic 50.0%
CCATCAACATCACCAAGCAG+CGG + chr1_1:60466371-60466390 Msa0033160:CDS 50.0%
! ATTCGGTGATACAGGGGAAC+TGG - chr1_1:60466519-60466538 None:intergenic 50.0%
TCCCCTGTATCACCGAATTC+AGG + chr1_1:60466521-60466540 Msa0033160:CDS 50.0%
! GCCTGAATTCGGTGATACAG+GGG - chr1_1:60466525-60466544 None:intergenic 50.0%
! CAGCCTGAATTCGGTGATAC+AGG - chr1_1:60466527-60466546 None:intergenic 50.0%
CTGTATCACCGAATTCAGGC+TGG + chr1_1:60466525-60466544 Msa0033160:CDS 50.0%
TCTACAGAAACAGATGCGGC+TGG + chr1_1:60466572-60466591 Msa0033160:CDS 50.0%
GAGCGGTTGTGGCACAATTT+AGG + chr1_1:60466883-60466902 Msa0033160:CDS 50.0%
ATACTGCGGATGTCATGCCA+CGG - chr1_1:60467088-60467107 None:intergenic 50.0%
CGGAGAATAGCAGCATACTG+CGG - chr1_1:60467102-60467121 None:intergenic 50.0%
! GGTTGCTGTCATTTCCTCCA+AGG + chr1_1:60467400-60467419 Msa0033160:CDS 50.0%
TCTCACCACCAAAAGGGGAA+AGG - chr1_1:60467445-60467464 None:intergenic 50.0%
!!! TGCCGGTTTTTCCTCTACCA+TGG + chr1_1:60467510-60467529 Msa0033160:CDS 50.0%
! CGGTTTTTCCTCTACCATGG+TGG + chr1_1:60467513-60467532 Msa0033160:CDS 50.0%
GGGAAAGTCTCAGTTCCATC+TGG + chr1_1:60467680-60467699 Msa0033160:CDS 50.0%
ACAGCAGAAACAGCACCAGA+TGG - chr1_1:60467698-60467717 None:intergenic 50.0%
GCGTATGCATTGTGCGAATC+AGG - chr1_1:60467740-60467759 None:intergenic 50.0%
TCATGCCATGGAACACTTGC+TGG + chr1_1:60467766-60467785 Msa0033160:CDS 50.0%
CAGACATCCCACCATTGAAC+AGG - chr1_1:60467929-60467948 None:intergenic 50.0%
! TCTATATCGGGGAGTACACC+TGG + chr1_1:60467980-60467999 Msa0033160:CDS 50.0%
AGGTGCATATAAACTCCGGG+AGG + chr1_1:60468113-60468132 Msa0033160:CDS 50.0%
ACTCCGGGAGGATACCAATT+TGG + chr1_1:60468125-60468144 Msa0033160:CDS 50.0%
CTGCCAAATTGGTATCCTCC+CGG - chr1_1:60468131-60468150 None:intergenic 50.0%
ACGCCACGTGTCCCAAAAAA+GGG + chr1_1:60469068-60469087 Msa0033160:intron 50.0%
! TCTTTGGCGGATGTAAGTGC+TGG - chr1_1:60470959-60470978 None:intergenic 50.0%
GCTTCAGCTGCTGTAAGCAT+CGG - chr1_1:60471023-60471042 None:intergenic 50.0%
CAGCAGCTGAAGCTATAGCT+AGG + chr1_1:60471030-60471049 Msa0033160:three_prime_UTR 50.0%
TTGACACGGAGGATCAAACC+TGG + chr1_1:60471450-60471469 Msa0033160:three_prime_UTR 50.0%
GCCGCGATTCTGCTATGCTT+TGG - chr1_1:60463898-60463917 None:intergenic 55.0%
TCCGTCGCTGCTTCTATCTC+CGG + chr1_1:60464272-60464291 Msa0033160:CDS 55.0%
CTGACCTCAGACTGTAGCAG+CGG + chr1_1:60465267-60465286 Msa0033160:intron 55.0%
AAGTCCGCTGCTACAGTCTG+AGG - chr1_1:60465274-60465293 None:intergenic 55.0%
CCTCTCCCTGCAAAAGCAGA+GGG + chr1_1:60465547-60465566 Msa0033160:CDS 55.0%
!! CACAGCCCTCTGCTTTTGCA+GGG - chr1_1:60465555-60465574 None:intergenic 55.0%
!! TCACAGCCCTCTGCTTTTGC+AGG - chr1_1:60465556-60465575 None:intergenic 55.0%
GCAAAAGCAGAGGGCTGTGA+CGG + chr1_1:60465556-60465575 Msa0033160:CDS 55.0%
AGATGGCCACAACGAAGCTC+AGG + chr1_1:60465657-60465676 Msa0033160:CDS 55.0%
AGCGAAGAGCTACCCAATGG+AGG - chr1_1:60465949-60465968 None:intergenic 55.0%
TATCCTGTGCCTCAGTTGGG+TGG + chr1_1:60466209-60466228 Msa0033160:CDS 55.0%
ATCCTGTGCCTCAGTTGGGT+GGG + chr1_1:60466210-60466229 Msa0033160:CDS 55.0%
ATTCCTTGCCCACCCAACTG+AGG - chr1_1:60466221-60466240 None:intergenic 55.0%
TCAGTTGGGTGGGCAAGGAA+TGG + chr1_1:60466220-60466239 Msa0033160:CDS 55.0%
TTGGGTGGGCAAGGAATGGT+TGG + chr1_1:60466224-60466243 Msa0033160:CDS 55.0%
TGGGTGGGCAAGGAATGGTT+GGG + chr1_1:60466225-60466244 Msa0033160:CDS 55.0%
GCTATGGTCCGATGGCTGTA+GGG + chr1_1:60466258-60466277 Msa0033160:CDS 55.0%
GAGGCATAAGCTAACCACCG+TGG - chr1_1:60466284-60466303 None:intergenic 55.0%
!! GATGTTGATGGGCTGACAGC+AGG - chr1_1:60466362-60466381 None:intergenic 55.0%
!! CCGCTGCTTGGTGATGTTGA+TGG - chr1_1:60466374-60466393 None:intergenic 55.0%
ATCACCAAGCAGCGGAAACC+TGG + chr1_1:60466379-60466398 Msa0033160:CDS 55.0%
CCATAGCATATCGGGCTACC+AGG - chr1_1:60466400-60466419 None:intergenic 55.0%
CCTGGTAGCCCGATATGCTA+TGG + chr1_1:60466397-60466416 Msa0033160:CDS 55.0%
ACAGGGGAACTGGATCCATC+AGG - chr1_1:60466509-60466528 None:intergenic 55.0%
AGAAACAGATGCGGCTGGAG+TGG + chr1_1:60466577-60466596 Msa0033160:CDS 55.0%
CACCTTTACAAGCTCCACCG+TGG + chr1_1:60467068-60467087 Msa0033160:CDS 55.0%
TGCCACGGTGGAGCTTGTAA+AGG - chr1_1:60467073-60467092 None:intergenic 55.0%
GGAGTGAACCACCATGGTAG+AGG - chr1_1:60467524-60467543 None:intergenic 55.0%
GGTGGCAAAGCTGTTGATGC+TGG - chr1_1:60467562-60467581 None:intergenic 55.0%
GAAAAGCAGGAGGTTGGGGT+GGG - chr1_1:60467583-60467602 None:intergenic 55.0%
AGAAAAGCAGGAGGTTGGGG+TGG - chr1_1:60467584-60467603 None:intergenic 55.0%
! ATATCGGGGAGTACACCTGG+TGG + chr1_1:60467983-60468002 Msa0033160:CDS 55.0%
TCAGCAGTTTCCAGTCCACC+AGG - chr1_1:60468001-60468020 None:intergenic 55.0%
TTCAGTCCACTTGGGGTGAC+AGG + chr1_1:60468407-60468426 Msa0033160:CDS 55.0%
CTGTTACCTGTCACCCCAAG+TGG - chr1_1:60468416-60468435 None:intergenic 55.0%
GACGCCACGTGTCCCAAAAA+AGG + chr1_1:60469067-60469086 Msa0033160:intron 55.0%
CGCCACGTGTCCCAAAAAAG+GGG + chr1_1:60469069-60469088 Msa0033160:intron 55.0%
ACATCCGCCAAAGACCTAGC+TGG + chr1_1:60470965-60470984 Msa0033160:three_prime_UTR 55.0%
CGTTCCAGCTAGGTCTTTGG+CGG - chr1_1:60470972-60470991 None:intergenic 55.0%
GGGTAGAAGAATAGGAGGCC+TGG + chr1_1:60471167-60471186 Msa0033160:three_prime_UTR 55.0%
GAAGTGATCTCAGCAGTGCC+AGG - chr1_1:60471188-60471207 None:intergenic 55.0%
ATTGGCAGCTTCTGGTGCTC+TGG + chr1_1:60471219-60471238 Msa0033160:three_prime_UTR 55.0%
TTGGCAGCTTCTGGTGCTCT+GGG + chr1_1:60471220-60471239 Msa0033160:three_prime_UTR 55.0%
TGTTAGGTGGCAGCATACGG+TGG + chr1_1:60471282-60471301 Msa0033160:three_prime_UTR 55.0%
GTTGCTGCCACCATCTACCA+CGG - chr1_1:60471338-60471357 None:intergenic 55.0%
AGTCGCGGAACGCAGTCGAT+CGG - chr1_1:60464067-60464086 None:intergenic 60.0%
CGGAATTCCCGGTCACTCAC+CGG + chr1_1:60464104-60464123 Msa0033160:five_prime_UTR 60.0%
AATTCCCGGTCACTCACCGG+TGG + chr1_1:60464107-60464126 Msa0033160:five_prime_UTR 60.0%
GGAGATAGAAGCAGCGACGG+AGG - chr1_1:60464273-60464292 None:intergenic 60.0%
GCCGGAGATAGAAGCAGCGA+CGG - chr1_1:60464276-60464295 None:intergenic 60.0%
GCTGCTTCTATCTCCGGCGA+TGG + chr1_1:60464278-60464297 Msa0033160:CDS 60.0%
GCCTCTCCCTGCAAAAGCAG+AGG + chr1_1:60465546-60465565 Msa0033160:CDS 60.0%
!! CCCTCTGCTTTTGCAGGGAG+AGG - chr1_1:60465550-60465569 None:intergenic 60.0%
GGGAGCGAAGAGCTACCCAA+TGG - chr1_1:60465952-60465971 None:intergenic 60.0%
GGGTGGGCAAGGAATGGTTG+GGG + chr1_1:60466226-60466245 Msa0033160:CDS 60.0%
GGCTATGGTCCGATGGCTGT+AGG + chr1_1:60466257-60466276 Msa0033160:CDS 60.0%
GCAGGAGGAGTCGGACTTTG+AGG - chr1_1:60466344-60466363 None:intergenic 60.0%
!! GTTGATGGGCTGACAGCAGG+AGG - chr1_1:60466359-60466378 None:intergenic 60.0%
GCTACCAGGTTTCCGCTGCT+TGG - chr1_1:60466386-60466405 None:intergenic 60.0%
!!! GGCCCCTTTTTTGGGACACG+TGG - chr1_1:60469074-60469093 None:intergenic 60.0%
TGGCAGCTTCTGGTGCTCTG+GGG + chr1_1:60471221-60471240 Msa0033160:three_prime_UTR 60.0%
TAGGTGGCAGCATACGGTGG+TGG + chr1_1:60471285-60471304 Msa0033160:three_prime_UTR 60.0%
AGGTGGCAGCATACGGTGGT+GGG + chr1_1:60471286-60471305 Msa0033160:three_prime_UTR 60.0%
!! GGTGGTGGGTCAGGCAACAA+TGG + chr1_1:60471300-60471319 Msa0033160:three_prime_UTR 60.0%
GGTGGGTCAGGCAACAATGG+TGG + chr1_1:60471303-60471322 Msa0033160:three_prime_UTR 60.0%
GGTCAGGCAACAATGGTGGC+AGG + chr1_1:60471307-60471326 Msa0033160:three_prime_UTR 60.0%
GGCAACAATGGTGGCAGGCA+CGG + chr1_1:60471312-60471331 Msa0033160:three_prime_UTR 60.0%
ACGACGGAGTTGGCCGTGCA+CGG - chr1_1:60464024-60464043 None:intergenic 65.0%
CGTTCCGCGACTCTCGTCGT+CGG + chr1_1:60464075-60464094 Msa0033160:five_prime_UTR 65.0%
ACTCTCGTCGTCGGCAGGGA+CGG + chr1_1:60464084-60464103 Msa0033160:five_prime_UTR 65.0%
GTCGGCAGGGACGGAATTCC+CGG + chr1_1:60464093-60464112 Msa0033160:five_prime_UTR 65.0%
TGCCCACCCAACTGAGGCAC+AGG - chr1_1:60466215-60466234 None:intergenic 65.0%
GTGCCTCAGTTGGGTGGGCA+AGG + chr1_1:60466215-60466234 Msa0033160:CDS 65.0%
GTCCGATGGCTGTAGGGCCA+CGG + chr1_1:60466264-60466283 Msa0033160:CDS 65.0%
CACCGTGGCCCTACAGCCAT+CGG - chr1_1:60466269-60466288 None:intergenic 65.0%
GGGCTGACAGCAGGAGGAGT+CGG - chr1_1:60466353-60466372 None:intergenic 65.0%
CTGCGGATGTCATGCCACGG+TGG - chr1_1:60467085-60467104 None:intergenic 65.0%
AAGCAGGAGGTTGGGGTGGG+TGG - chr1_1:60467580-60467599 None:intergenic 65.0%
! GGGGAGTACACCTGGTGGAC+TGG + chr1_1:60467988-60468007 Msa0033160:CDS 65.0%
GGCAGCTTCTGGTGCTCTGG+GGG + chr1_1:60471222-60471241 Msa0033160:three_prime_UTR 65.0%
!! GCAGCATACGGTGGTGGGTC+AGG + chr1_1:60471291-60471310 Msa0033160:three_prime_UTR 65.0%
ACGGAGTTGGCCGTGCACGG+CGG - chr1_1:60464021-60464040 None:intergenic 70.0%
CCTGCCGACGACGAGAGTCG+CGG - chr1_1:60464082-60464101 None:intergenic 70.0%
CGCGACTCTCGTCGTCGGCA+GGG + chr1_1:60464080-60464099 Msa0033160:five_prime_UTR 70.0%
TCCCGGTCACTCACCGGTGG+TGG + chr1_1:60464110-60464129 Msa0033160:five_prime_UTR 70.0%
GCCACCACCGGTGAGTGACC+GGG - chr1_1:60464114-60464133 None:intergenic 70.0%
GGCCACCACCGGTGAGTGAC+CGG - chr1_1:60464115-60464134 None:intergenic 70.0%
TCCTCCGGCGTCCGAACTGC+CGG + chr1_1:60464245-60464264 Msa0033160:CDS 70.0%
! AGAAGCAGCGACGGAGGCGC+CGG - chr1_1:60464267-60464286 None:intergenic 70.0%
CGATGGCTGTAGGGCCACGG+TGG + chr1_1:60466267-60466286 Msa0033160:CDS 70.0%
AATGGTGGCAGGCACGGCCG+TGG + chr1_1:60471318-60471337 Msa0033160:three_prime_UTR 70.0%
GCAGGCACGGCCGTGGTAGA+TGG + chr1_1:60471325-60471344 Msa0033160:three_prime_UTR 70.0%
GGCACGGCCGTGGTAGATGG+TGG + chr1_1:60471328-60471347 Msa0033160:three_prime_UTR 70.0%
CCGCGACTCTCGTCGTCGGC+AGG + chr1_1:60464079-60464098 Msa0033160:five_prime_UTR 75.0%
!! CGACGGAGGCGCCGGCAGTT+CGG - chr1_1:60464259-60464278 None:intergenic 75.0%
! GCCGGCAGTTCGGACGCCGG+AGG - chr1_1:60464249-60464268 None:intergenic 80.0%
!!! GGCGCCGGCAGTTCGGACGC+CGG - chr1_1:60464252-60464271 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60463791 60471762 60463791 ID=Msa0033160;Name=Msa0033160
chr1_1 mRNA 60463791 60471762 60463791 ID=Msa0033160-mRNA-1;Parent=Msa0033160;Name=Msa0033160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=361|1|1|1|0.85|0.75|8|1525|808
chr1_1 exon 60463791 60464319 60463791 ID=Msa0033160-mRNA-1:exon:18909;Parent=Msa0033160-mRNA-1
chr1_1 exon 60465379 60465822 60465379 ID=Msa0033160-mRNA-1:exon:18910;Parent=Msa0033160-mRNA-1
chr1_1 exon 60466158 60466598 60466158 ID=Msa0033160-mRNA-1:exon:18911;Parent=Msa0033160-mRNA-1
chr1_1 exon 60466858 60467103 60466858 ID=Msa0033160-mRNA-1:exon:18912;Parent=Msa0033160-mRNA-1
chr1_1 exon 60467362 60468159 60467362 ID=Msa0033160-mRNA-1:exon:18913;Parent=Msa0033160-mRNA-1
chr1_1 exon 60468253 60468428 60468253 ID=Msa0033160-mRNA-1:exon:18914;Parent=Msa0033160-mRNA-1
chr1_1 exon 60469649 60470278 60469649 ID=Msa0033160-mRNA-1:exon:18915;Parent=Msa0033160-mRNA-1
chr1_1 exon 60470714 60471762 60470714 ID=Msa0033160-mRNA-1:exon:18916;Parent=Msa0033160-mRNA-1
chr1_1 five_prime_UTR 60463791 60464151 60463791 ID=Msa0033160-mRNA-1:five_prime_utr;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60464152 60464319 60464152 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60465379 60465822 60465379 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60466158 60466598 60466158 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60466858 60467103 60466858 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60467362 60468159 60467362 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60468253 60468428 60468253 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 CDS 60469649 60469802 60469649 ID=Msa0033160-mRNA-1:cds;Parent=Msa0033160-mRNA-1
chr1_1 three_prime_UTR 60469803 60470278 60469803 ID=Msa0033160-mRNA-1:three_prime_utr;Parent=Msa0033160-mRNA-1
chr1_1 three_prime_UTR 60470714 60471762 60470714 ID=Msa0033160-mRNA-1:three_prime_utr;Parent=Msa0033160-mRNA-1
Gene Sequence

>Msa0033160

ATGAAGAAGCAAGGGAAGAACAACAACGTTTCCAAGAGCAATGGATTCGTTCCTTCTTCTTTCAAGTTCATTTCGTCTTGCATTAAGACGGCTTCCTCCGGCGTCCGAACTGCCGGCGCCTCCGTCGCTGCTTCTATCTCCGGCGATGGAACCGATCGTAAAGATCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAGCTCGGTCTGTCTTCTTTCAAACGTGTACTCCTACTCGGTTATTCCAATGGATTTCAAGTTCTCGATGTGGAAGATGCCTCTAATATCAGGGAACTTGTCTCAAAACGTGATGATCCAGTTTCGTTTTTACAGATGCAGCCTCTCCCTGCAAAAGCAGAGGGCTGTGACGGATTTAGAGCATCACATCCTTTACTCTTGGTTGTTGCATGTGATAAATCAAAGATACCTGGTACAGTGCAAAATGTCAGAGATGGCCACAACGAAGCTCAGGCTGAAAATATTATCAACTCAGCTACAACTGTTAGATTCTACTCACTAAGGTCCCATACCTATGTTCATGCTCTAAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCTCAAATAGTCGCTGTGGGTCTTGCTACTCAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTGCCTCAGTTGGGTGGGCAAGGAATGGTTGGGGTTAATATTGGCTATGGTCCGATGGCTGTAGGGCCACGGTGGTTAGCTTATGCCTCCAACAACCCATTGTTGTTAAACACAAGTCGCTTAAGTCCTCAAAGTCCGACTCCTCCTGCTGTCAGCCCATCAACATCACCAAGCAGCGGAAACCTGGTAGCCCGATATGCTATGGAATCTAGCAAGCATTTGGCTTCTGGGCTGATCAATCTTAGTGATATGGGCTACAAAACACTGTCTAAATATTATCAAGATCTAATGCCTGATGGATCCAGTTCCCCTGTATCACCGAATTCAGGCTGGAAAGTTAGTCGATTTGCTTCAAATTCTACAGAAACAGATGCGGCTGGAGTGGTTGTTGTCAAGGATTTTGTTTCTAGAGCGGTTGTGGCACAATTTAGGGCCCATACTAGTCCTATATCTGCGCTATGTTTTGATCAGAGTGGAACACTTCTAGTTACAGCCTCAATTCATGGTAATAACATCAACATATTTCGAATTATGCCTTCCTACTCAAAGAAAGGATCGGGTTCTCAAAGCAATGATTGGAGTTGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACATCCGCAGTAATACAAGATATTTGTTTTAGTCATTACAGTCAGTGGGTTGCTGTCATTTCCTCCAAGGGAACTTGTCATATTTTTGTCCTTTCCCCTTTTGGTGGTGAGACAGTTCTTAAGATACACAATCAGGACACAGAAGGACCTGTTCTTTTGCCGGTTTTTCCTCTACCATGGTGGTTCACTCCACATTTTACTGTAAACCAGCATCAACAGCTTTGCCACCCACCCCAACCTCCTGCTTTTCTTTCTGTGGTTAGCAGAATAAAAAATGTTAATGCCGGATGGCTTAATACGGTTAGTAATGTTTCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCTGCTGTCTTTCATAGTTCTGTTCCTCCTGATTCGCACAATGCATACGCAAAAGTTCATGCCATGGAACACTTGCTGGTTTATACTCCTTCTGGTCACTTAATTCAGTATAACCTACTATCGTCATTGATGGCAGAGCCAAATGAAACTGCTTCAAGAACAGCTCAAGTTCCTTCACCACAGATACAAGAAGAAGATTTACGAGTGAAAGTGGAACCTGTTCAATGGTGGGATGTCTGTAGAAGATATGATTGGCAAGAAAAAGAGGTTTCTATATCGGGGAGTACACCTGGTGGACTGGAAACTGCTGAAATGATATTGGATGTTTCAAATTGTGAAAATTATAGTGTTGGGAATGATGATTCCGTAAAACTTAATCAGGATTGTCACGTCTCAAATGCAGAGGTGCATATAAACTCCGGGAGGATACCAATTTGGCAGAAATCTGAGGTGTCTTTCTTTGTGATGGGTTCTTTTGAAACTGAAGAGCTGAATAAATGTGAACTTTTAACCAATGGGGAGATTGAAATAGAGGATATTCCTGATAATGAGGTTGAAATAAGACAGAAGGTTTTGTTGCCCGTCCTTGATCATTTCCACAAAATTCAGTCCACTTGGGGTGACAGAGGCATTGTTTTGGGAAGATGCTCTAGCTCTTCATCTGATTCACATGCAACTGAAGAGAAGTTGTCAGAAGATGCTGCGATTTCCCATCCGAAGTTAACTGTACCTGGCTTTGTGGGAAAAACATATGTTGGTAAGATAAGCAACCCAGTGTGA
Protein sequence

>Msa0033160

MKKQGKNNNVSKSNGFVPSSFKFISSCIKTASSGVRTAGASVAASISGDGTDRKDQVLWACFDRLELGLSSFKRVLLLGYSNGFQVLDVEDASNIRELVSKRDDPVSFLQMQPLPAKAEGCDGFRASHPLLLVVACDKSKIPGTVQNVRDGHNEAQAENIINSATTVRFYSLRSHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMVGVNIGYGPMAVGPRWLAYASNNPLLLNTSRLSPQSPTPPAVSPSTSPSSGNLVARYAMESSKHLASGLINLSDMGYKTLSKYYQDLMPDGSSSPVSPNSGWKVSRFASNSTETDAAGVVVVKDFVSRAVVAQFRAHTSPISALCFDQSGTLLVTASIHGNNINIFRIMPSYSKKGSGSQSNDWSCSHVHLYKLHRGMTSAVIQDICFSHYSQWVAVISSKGTCHIFVLSPFGGETVLKIHNQDTEGPVLLPVFPLPWWFTPHFTVNQHQQLCHPPQPPAFLSVVSRIKNVNAGWLNTVSNVSSSAAGKVSVPSGAVSAVFHSSVPPDSHNAYAKVHAMEHLLVYTPSGHLIQYNLLSSLMAEPNETASRTAQVPSPQIQEEDLRVKVEPVQWWDVCRRYDWQEKEVSISGSTPGGLETAEMILDVSNCENYSVGNDDSVKLNQDCHVSNAEVHINSGRIPIWQKSEVSFFVMGSFETEELNKCELLTNGEIEIEDIPDNEVEIRQKVLLPVLDHFHKIQSTWGDRGIVLGRCSSSSSDSHATEEKLSEDAAISHPKLTVPGFVGKTYVGKISNPV*