Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128720 | XP_024639439.1 | 93.956 | 182 | 7 | 1 | 1 | 182 | 1 | 178 | 6.24e-121 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128720 | sp|O81417|SRPP_ARATH | 40.113 | 177 | 91 | 2 | 1 | 177 | 1 | 162 | 5.18e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128720 | A0A396JXT1 | 93.956 | 182 | 7 | 1 | 1 | 182 | 1 | 178 | 2.98e-121 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0128720 | Msa1003110 | 0.810170 | 1.316726e-50 | -8.615850e-47 |
| Msa0128720 | Msa1021620 | 0.804317 | 2.289774e-49 | -8.615850e-47 |
| Msa0128720 | Msa1133860 | 0.802158 | 6.407796e-49 | -8.615850e-47 |
| Msa0128720 | Msa1447780 | 0.984579 | 5.677482e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128720 | MtrunA17_Chr1g0195201 | 93.956 | 182 | 7 | 1 | 1 | 182 | 1 | 178 | 5.74e-125 | 349 |
| Msa0128720 | MtrunA17_Chr1g0195171 | 50.388 | 129 | 62 | 2 | 54 | 182 | 313 | 439 | 1.01e-35 | 129 |
| Msa0128720 | MtrunA17_Chr1g0195181 | 48.837 | 129 | 64 | 2 | 54 | 182 | 454 | 580 | 2.30e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128720 | AT2G47540.1 | 45.109 | 184 | 77 | 4 | 5 | 182 | 6 | 171 | 2.66e-49 | 157 |
| Msa0128720 | AT4G02270.1 | 40.113 | 177 | 91 | 2 | 1 | 177 | 1 | 162 | 5.27e-42 | 139 |
| Msa0128720 | AT2G47530.1 | 36.842 | 133 | 76 | 4 | 53 | 180 | 54 | 183 | 1.66e-20 | 84.3 |
| Msa0128720 | AT3G62680.1 | 34.426 | 122 | 72 | 2 | 55 | 174 | 187 | 302 | 6.21e-17 | 77.0 |
| Msa0128720 | AT1G54970.1 | 33.058 | 121 | 72 | 2 | 55 | 175 | 213 | 324 | 8.57e-15 | 71.2 |
Find 45 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCATTTAAATTCGGTTTC+TGG | 0.145695 | 1_3:+58585682 | None:intergenic |
| GGCCTTGTTTACTGCAAATC+TGG | 0.310161 | 1_3:-58585630 | Msa0128720:CDS |
| CTAATCATTAGAGATTGATT+TGG | 0.324380 | 1_3:+58584406 | None:intergenic |
| AGAGAGTAATTACCTTCAAT+TGG | 0.329452 | 1_3:+58585594 | None:intergenic |
| ATCATTTAAATTCGGTTTCT+GGG | 0.344201 | 1_3:+58585683 | None:intergenic |
| TGCGAAGCTGCTGATGAATA+TGG | 0.352523 | 1_3:-58584698 | Msa0128720:CDS |
| CCTTGCAACATTGTTTCAAC+AGG | 0.370546 | 1_3:-58584618 | Msa0128720:CDS |
| TCCAACAATATTGGTATTCA+AGG | 0.371305 | 1_3:-58585651 | Msa0128720:CDS |
| TAATCATTAGAGATTGATTT+GGG | 0.390903 | 1_3:+58584407 | None:intergenic |
| AACATTGTTTCAACAGGAAC+TGG | 0.415978 | 1_3:-58584612 | Msa0128720:CDS |
| GCCTTGAATACCAATATTGT+TGG | 0.419942 | 1_3:+58585650 | None:intergenic |
| TATGCCAATGGCGATGACTA+TGG | 0.437151 | 1_3:-58585726 | Msa0128720:CDS |
| GAAGCATGAAAGCCAGAAAT+CGG | 0.449214 | 1_3:+58585784 | None:intergenic |
| GAGAGTAATTACCTTCAATT+GGG | 0.453631 | 1_3:+58585595 | None:intergenic |
| GCATCATTTAAGAAAGAGAA+TGG | 0.465719 | 1_3:+58584662 | None:intergenic |
| CATGTATAGGGGCCGTTACA+AGG | 0.468866 | 1_3:-58584727 | Msa0128720:intron |
| GATTTCAACAAAGGGATTAG+TGG | 0.469295 | 1_3:-58584512 | Msa0128720:CDS |
| TGTTCAAAGGAGAAGCTTCA+AGG | 0.472796 | 1_3:+58584552 | None:intergenic |
| GGTGTTGAGGTGAAAACAAA+AGG | 0.484964 | 1_3:+58584428 | None:intergenic |
| ATCCCACAGATTTCAACAAA+GGG | 0.486932 | 1_3:-58584520 | Msa0128720:CDS |
| TCTAAACTCATCCCAATTGA+AGG | 0.500264 | 1_3:-58585606 | Msa0128720:intron |
| ACAAATTCATCTTATTGTCA+TGG | 0.505797 | 1_3:+58584462 | None:intergenic |
| GGTGCCATAGTCATCGCCAT+TGG | 0.512980 | 1_3:+58585722 | None:intergenic |
| ATCCCTTTGTTGAAATCTGT+GGG | 0.513593 | 1_3:+58584518 | None:intergenic |
| AATCCCTTTGTTGAAATCTG+TGG | 0.518518 | 1_3:+58584517 | None:intergenic |
| AATGATGCAACCAATGCAAA+GGG | 0.526621 | 1_3:-58584647 | Msa0128720:CDS |
| GGATAATTGCAGTTGTTCAA+AGG | 0.534014 | 1_3:+58584539 | None:intergenic |
| TTGGCATAAGCAAAACTACA+TGG | 0.534760 | 1_3:+58585741 | None:intergenic |
| AAGGAAATATCCCTTTGCAT+TGG | 0.551886 | 1_3:+58584637 | None:intergenic |
| AAATGATGCAACCAATGCAA+AGG | 0.556892 | 1_3:-58584648 | Msa0128720:CDS |
| ATTGTCATGGAGGAAGTGAT+AGG | 0.561247 | 1_3:+58584475 | None:intergenic |
| TATCCCACAGATTTCAACAA+AGG | 0.562418 | 1_3:-58584521 | Msa0128720:CDS |
| CCTGTTGAAACAATGTTGCA+AGG | 0.563372 | 1_3:+58584618 | None:intergenic |
| AGAGATTGATTTGGGTGTTG+AGG | 0.565424 | 1_3:+58584415 | None:intergenic |
| ACGGGTGCTAAAGGAGTGTA+GGG | 0.569532 | 1_3:-58584579 | Msa0128720:CDS |
| AGCCAGATTTGCAGTAAACA+AGG | 0.571544 | 1_3:+58585628 | None:intergenic |
| GCTTCTGATCACATCCATGT+TGG | 0.575842 | 1_3:-58585766 | Msa0128720:CDS |
| AACGGGTGCTAAAGGAGTGT+AGG | 0.594859 | 1_3:-58584580 | Msa0128720:CDS |
| TAAGATGAATTTGTATACCG+TGG | 0.595465 | 1_3:-58584453 | Msa0128720:CDS |
| TTCGCATGCTATCCTTGTAA+CGG | 0.619603 | 1_3:+58584715 | None:intergenic |
| AAGATGAATTTGTATACCGT+GGG | 0.632235 | 1_3:-58584452 | Msa0128720:CDS |
| AATTCATCTTATTGTCATGG+AGG | 0.657555 | 1_3:+58584465 | None:intergenic |
| TGGCATAAGCAAAACTACAT+GGG | 0.671717 | 1_3:+58585742 | None:intergenic |
| AAAACTACATGGGACCAACA+TGG | 0.678235 | 1_3:+58585752 | None:intergenic |
| GGTGAAAACAAAAGGTCCCA+CGG | 0.678253 | 1_3:+58584436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATTTTGAAAAAACT+AGG | + | chr1_3:58585014-58585033 | None:intergenic | 10.0% |
| !!! | AAATATATTTTGAAAAAACT+AGG | + | chr1_3:58585014-58585033 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTCCAACAATAT+TGG | - | chr1_3:58584547-58584566 | Msa0128720:CDS | 15.0% |
| !!! | TTCTGTCTTTTTTTTATTAA+AGG | - | chr1_3:58584666-58584685 | Msa0128720:CDS | 15.0% |
| !!! | TCTGTCTTTTTTTTATTAAA+GGG | - | chr1_3:58584667-58584686 | Msa0128720:CDS | 15.0% |
| !!! | TTTTACTAAAACATTATTAC+AGG | + | chr1_3:58584791-58584810 | None:intergenic | 15.0% |
| !!! | ATTTTGACTAAAAAATGAAA+AGG | - | chr1_3:58584956-58584975 | Msa0128720:intron | 15.0% |
| !!! | TTTTGACTAAAAAATGAAAA+GGG | - | chr1_3:58584957-58584976 | Msa0128720:intron | 15.0% |
| !!! | TTTTCAATCAATAATAACAA+CGG | - | chr1_3:58585267-58585286 | Msa0128720:intron | 15.0% |
| !! | TCTTTATTGAGATAATATAT+AGG | - | chr1_3:58585299-58585318 | Msa0128720:intron | 15.0% |
| !! | CTTTATTGAGATAATATATA+GGG | - | chr1_3:58585300-58585319 | Msa0128720:intron | 15.0% |
| !!! | AAATTTTTTTCCAACAATAT+TGG | - | chr1_3:58584547-58584566 | Msa0128720:CDS | 15.0% |
| !!! | TTCTGTCTTTTTTTTATTAA+AGG | - | chr1_3:58584666-58584685 | Msa0128720:CDS | 15.0% |
| !!! | TCTGTCTTTTTTTTATTAAA+GGG | - | chr1_3:58584667-58584686 | Msa0128720:CDS | 15.0% |
| !!! | TTTTACTAAAACATTATTAC+AGG | + | chr1_3:58584791-58584810 | None:intergenic | 15.0% |
| !!! | ATTTTGACTAAAAAATGAAA+AGG | - | chr1_3:58584956-58584975 | Msa0128720:intron | 15.0% |
| !!! | TTTTGACTAAAAAATGAAAA+GGG | - | chr1_3:58584957-58584976 | Msa0128720:intron | 15.0% |
| !!! | TTTTCAATCAATAATAACAA+CGG | - | chr1_3:58585267-58585286 | Msa0128720:intron | 15.0% |
| !! | TCTTTATTGAGATAATATAT+AGG | - | chr1_3:58585299-58585318 | Msa0128720:intron | 15.0% |
| !! | CTTTATTGAGATAATATATA+GGG | - | chr1_3:58585300-58585319 | Msa0128720:intron | 15.0% |
| !! | ACCATTTATTAAACTGATAT+AGG | - | chr1_3:58584848-58584867 | Msa0128720:intron | 20.0% |
| !! | CCATTTATTAAACTGATATA+GGG | - | chr1_3:58584849-58584868 | Msa0128720:intron | 20.0% |
| !!! | TTCAAAAGAAATGATTTTCA+TGG | + | chr1_3:58585055-58585074 | None:intergenic | 20.0% |
| !!! | TTTATTTTAATGAACAAGTG+TGG | + | chr1_3:58585392-58585411 | None:intergenic | 20.0% |
| !!! | TAATCATTAGAGATTGATTT+GGG | + | chr1_3:58585803-58585822 | None:intergenic | 20.0% |
| !! | ACCATTTATTAAACTGATAT+AGG | - | chr1_3:58584848-58584867 | Msa0128720:intron | 20.0% |
| !! | CCATTTATTAAACTGATATA+GGG | - | chr1_3:58584849-58584868 | Msa0128720:intron | 20.0% |
| !!! | TTCAAAAGAAATGATTTTCA+TGG | + | chr1_3:58585055-58585074 | None:intergenic | 20.0% |
| !!! | TTTATTTTAATGAACAAGTG+TGG | + | chr1_3:58585392-58585411 | None:intergenic | 20.0% |
| !!! | TAATCATTAGAGATTGATTT+GGG | + | chr1_3:58585803-58585822 | None:intergenic | 20.0% |
| !! | TTTTACAAATATCCGATTTC+TGG | - | chr1_3:58584411-58584430 | Msa0128720:CDS | 25.0% |
| ! | ATCATTTAAATTCGGTTTCT+GGG | + | chr1_3:58584527-58584546 | None:intergenic | 25.0% |
| ! | TATCATTTAAATTCGGTTTC+TGG | + | chr1_3:58584528-58584547 | None:intergenic | 25.0% |
| !! | CTTAAACCTCAAAATTTGTT+GGG | + | chr1_3:58584739-58584758 | None:intergenic | 25.0% |
| ! | CCCTATATCAGTTTAATAAA+TGG | + | chr1_3:58584852-58584871 | None:intergenic | 25.0% |
| !! | TTTTCATGTTGAAGTTTTTG+TGG | + | chr1_3:58584985-58585004 | None:intergenic | 25.0% |
| ! | TTCATGGTTATTACATTTCT+AGG | + | chr1_3:58585039-58585058 | None:intergenic | 25.0% |
| ! | ACAAATTCATCTTATTGTCA+TGG | + | chr1_3:58585748-58585767 | None:intergenic | 25.0% |
| ! | CTAATCATTAGAGATTGATT+TGG | + | chr1_3:58585804-58585823 | None:intergenic | 25.0% |
| !! | TTTTACAAATATCCGATTTC+TGG | - | chr1_3:58584411-58584430 | Msa0128720:CDS | 25.0% |
| ! | ATCATTTAAATTCGGTTTCT+GGG | + | chr1_3:58584527-58584546 | None:intergenic | 25.0% |
| ! | TATCATTTAAATTCGGTTTC+TGG | + | chr1_3:58584528-58584547 | None:intergenic | 25.0% |
| !! | CTTAAACCTCAAAATTTGTT+GGG | + | chr1_3:58584739-58584758 | None:intergenic | 25.0% |
| ! | CCCTATATCAGTTTAATAAA+TGG | + | chr1_3:58584852-58584871 | None:intergenic | 25.0% |
| !! | TTTTCATGTTGAAGTTTTTG+TGG | + | chr1_3:58584985-58585004 | None:intergenic | 25.0% |
| ! | TTCATGGTTATTACATTTCT+AGG | + | chr1_3:58585039-58585058 | None:intergenic | 25.0% |
| ! | ACAAATTCATCTTATTGTCA+TGG | + | chr1_3:58585748-58585767 | None:intergenic | 25.0% |
| ! | CTAATCATTAGAGATTGATT+TGG | + | chr1_3:58585804-58585823 | None:intergenic | 25.0% |
| TCCAACAATATTGGTATTCA+AGG | - | chr1_3:58584556-58584575 | Msa0128720:CDS | 30.0% | |
| GAGAGTAATTACCTTCAATT+GGG | + | chr1_3:58584615-58584634 | None:intergenic | 30.0% | |
| AGAGAGTAATTACCTTCAAT+TGG | + | chr1_3:58584616-58584635 | None:intergenic | 30.0% | |
| AGTATTAGACTACTTTGACA+TGG | - | chr1_3:58584707-58584726 | Msa0128720:CDS | 30.0% | |
| CCTTAAACCTCAAAATTTGT+TGG | + | chr1_3:58584740-58584759 | None:intergenic | 30.0% | |
| !!! | CCAACAAATTTTGAGGTTTA+AGG | - | chr1_3:58584737-58584756 | Msa0128720:intron | 30.0% |
| CAATCAATAATAACAACGGT+TGG | - | chr1_3:58585271-58585290 | Msa0128720:intron | 30.0% | |
| AAACATATTCGTGCATGTAT+AGG | - | chr1_3:58585467-58585486 | Msa0128720:intron | 30.0% | |
| AACATATTCGTGCATGTATA+GGG | - | chr1_3:58585468-58585487 | Msa0128720:intron | 30.0% | |
| GCATCATTTAAGAAAGAGAA+TGG | + | chr1_3:58585548-58585567 | None:intergenic | 30.0% | |
| AATTCATCTTATTGTCATGG+AGG | + | chr1_3:58585745-58585764 | None:intergenic | 30.0% | |
| TAAGATGAATTTGTATACCG+TGG | - | chr1_3:58585754-58585773 | Msa0128720:CDS | 30.0% | |
| AAGATGAATTTGTATACCGT+GGG | - | chr1_3:58585755-58585774 | Msa0128720:CDS | 30.0% | |
| TCCAACAATATTGGTATTCA+AGG | - | chr1_3:58584556-58584575 | Msa0128720:CDS | 30.0% | |
| GAGAGTAATTACCTTCAATT+GGG | + | chr1_3:58584615-58584634 | None:intergenic | 30.0% | |
| AGAGAGTAATTACCTTCAAT+TGG | + | chr1_3:58584616-58584635 | None:intergenic | 30.0% | |
| AGTATTAGACTACTTTGACA+TGG | - | chr1_3:58584707-58584726 | Msa0128720:CDS | 30.0% | |
| CCTTAAACCTCAAAATTTGT+TGG | + | chr1_3:58584740-58584759 | None:intergenic | 30.0% | |
| !!! | CCAACAAATTTTGAGGTTTA+AGG | - | chr1_3:58584737-58584756 | Msa0128720:intron | 30.0% |
| CAATCAATAATAACAACGGT+TGG | - | chr1_3:58585271-58585290 | Msa0128720:intron | 30.0% | |
| AAACATATTCGTGCATGTAT+AGG | - | chr1_3:58585467-58585486 | Msa0128720:intron | 30.0% | |
| AACATATTCGTGCATGTATA+GGG | - | chr1_3:58585468-58585487 | Msa0128720:intron | 30.0% | |
| GCATCATTTAAGAAAGAGAA+TGG | + | chr1_3:58585548-58585567 | None:intergenic | 30.0% | |
| AATTCATCTTATTGTCATGG+AGG | + | chr1_3:58585745-58585764 | None:intergenic | 30.0% | |
| TAAGATGAATTTGTATACCG+TGG | - | chr1_3:58585754-58585773 | Msa0128720:CDS | 30.0% | |
| AAGATGAATTTGTATACCGT+GGG | - | chr1_3:58585755-58585774 | Msa0128720:CDS | 30.0% | |
| TGGCATAAGCAAAACTACAT+GGG | + | chr1_3:58584468-58584487 | None:intergenic | 35.0% | |
| TTGGCATAAGCAAAACTACA+TGG | + | chr1_3:58584469-58584488 | None:intergenic | 35.0% | |
| !! | TGTAGTTTTGCTTATGCCAA+TGG | - | chr1_3:58584469-58584488 | Msa0128720:CDS | 35.0% |
| GCCTTGAATACCAATATTGT+TGG | + | chr1_3:58584560-58584579 | None:intergenic | 35.0% | |
| TCTAAACTCATCCCAATTGA+AGG | - | chr1_3:58584601-58584620 | Msa0128720:CDS | 35.0% | |
| !! | AACCTCAAAATTTGTTGGGT+CGG | + | chr1_3:58584735-58584754 | None:intergenic | 35.0% |
| ! | GTTTAAGGCACATGTTAAGA+TGG | - | chr1_3:58584752-58584771 | Msa0128720:intron | 35.0% |
| TGAGATAATATATAGGGTCG+CGG | - | chr1_3:58585306-58585325 | Msa0128720:intron | 35.0% | |
| CAAGTGTGGTTAAACATCAA+GGG | + | chr1_3:58585378-58585397 | None:intergenic | 35.0% | |
| ACAAGTGTGGTTAAACATCA+AGG | + | chr1_3:58585379-58585398 | None:intergenic | 35.0% | |
| ACATATTCGTGCATGTATAG+GGG | - | chr1_3:58585469-58585488 | Msa0128720:intron | 35.0% | |
| AAATGATGCAACCAATGCAA+AGG | - | chr1_3:58585559-58585578 | Msa0128720:intron | 35.0% | |
| AATGATGCAACCAATGCAAA+GGG | - | chr1_3:58585560-58585579 | Msa0128720:intron | 35.0% | |
| AAGGAAATATCCCTTTGCAT+TGG | + | chr1_3:58585573-58585592 | None:intergenic | 35.0% | |
| AACATTGTTTCAACAGGAAC+TGG | - | chr1_3:58585595-58585614 | Msa0128720:intron | 35.0% | |
| GGATAATTGCAGTTGTTCAA+AGG | + | chr1_3:58585671-58585690 | None:intergenic | 35.0% | |
| TATCCCACAGATTTCAACAA+AGG | - | chr1_3:58585686-58585705 | Msa0128720:CDS | 35.0% | |
| ATCCCACAGATTTCAACAAA+GGG | - | chr1_3:58585687-58585706 | Msa0128720:CDS | 35.0% | |
| ATCCCTTTGTTGAAATCTGT+GGG | + | chr1_3:58585692-58585711 | None:intergenic | 35.0% | |
| AATCCCTTTGTTGAAATCTG+TGG | + | chr1_3:58585693-58585712 | None:intergenic | 35.0% | |
| GATTTCAACAAAGGGATTAG+TGG | - | chr1_3:58585695-58585714 | Msa0128720:CDS | 35.0% | |
| TGGCATAAGCAAAACTACAT+GGG | + | chr1_3:58584468-58584487 | None:intergenic | 35.0% | |
| TTGGCATAAGCAAAACTACA+TGG | + | chr1_3:58584469-58584488 | None:intergenic | 35.0% | |
| !! | TGTAGTTTTGCTTATGCCAA+TGG | - | chr1_3:58584469-58584488 | Msa0128720:CDS | 35.0% |
| GCCTTGAATACCAATATTGT+TGG | + | chr1_3:58584560-58584579 | None:intergenic | 35.0% | |
| TCTAAACTCATCCCAATTGA+AGG | - | chr1_3:58584601-58584620 | Msa0128720:CDS | 35.0% | |
| !! | AACCTCAAAATTTGTTGGGT+CGG | + | chr1_3:58584735-58584754 | None:intergenic | 35.0% |
| ! | GTTTAAGGCACATGTTAAGA+TGG | - | chr1_3:58584752-58584771 | Msa0128720:intron | 35.0% |
| TGAGATAATATATAGGGTCG+CGG | - | chr1_3:58585306-58585325 | Msa0128720:intron | 35.0% | |
| CAAGTGTGGTTAAACATCAA+GGG | + | chr1_3:58585378-58585397 | None:intergenic | 35.0% | |
| ACAAGTGTGGTTAAACATCA+AGG | + | chr1_3:58585379-58585398 | None:intergenic | 35.0% | |
| ACATATTCGTGCATGTATAG+GGG | - | chr1_3:58585469-58585488 | Msa0128720:intron | 35.0% | |
| AAATGATGCAACCAATGCAA+AGG | - | chr1_3:58585559-58585578 | Msa0128720:intron | 35.0% | |
| AATGATGCAACCAATGCAAA+GGG | - | chr1_3:58585560-58585579 | Msa0128720:intron | 35.0% | |
| AAGGAAATATCCCTTTGCAT+TGG | + | chr1_3:58585573-58585592 | None:intergenic | 35.0% | |
| AACATTGTTTCAACAGGAAC+TGG | - | chr1_3:58585595-58585614 | Msa0128720:intron | 35.0% | |
| GGATAATTGCAGTTGTTCAA+AGG | + | chr1_3:58585671-58585690 | None:intergenic | 35.0% | |
| TATCCCACAGATTTCAACAA+AGG | - | chr1_3:58585686-58585705 | Msa0128720:CDS | 35.0% | |
| ATCCCACAGATTTCAACAAA+GGG | - | chr1_3:58585687-58585706 | Msa0128720:CDS | 35.0% | |
| ATCCCTTTGTTGAAATCTGT+GGG | + | chr1_3:58585692-58585711 | None:intergenic | 35.0% | |
| AATCCCTTTGTTGAAATCTG+TGG | + | chr1_3:58585693-58585712 | None:intergenic | 35.0% | |
| GATTTCAACAAAGGGATTAG+TGG | - | chr1_3:58585695-58585714 | Msa0128720:CDS | 35.0% | |
| GAAGCATGAAAGCCAGAAAT+CGG | + | chr1_3:58584426-58584445 | None:intergenic | 40.0% | |
| AAAACTACATGGGACCAACA+TGG | + | chr1_3:58584458-58584477 | None:intergenic | 40.0% | |
| !!! | CTGGGTGACATCTTGTTTTT+TGG | + | chr1_3:58584509-58584528 | None:intergenic | 40.0% |
| AGCCAGATTTGCAGTAAACA+AGG | + | chr1_3:58584582-58584601 | None:intergenic | 40.0% | |
| CTTAGACATCGCAACTTAGT+TGG | + | chr1_3:58585352-58585371 | None:intergenic | 40.0% | |
| TTCGCATGCTATCCTTGTAA+CGG | + | chr1_3:58585495-58585514 | None:intergenic | 40.0% | |
| CCTGTTGAAACAATGTTGCA+AGG | + | chr1_3:58585592-58585611 | None:intergenic | 40.0% | |
| CCTTGCAACATTGTTTCAAC+AGG | - | chr1_3:58585589-58585608 | Msa0128720:intron | 40.0% | |
| AGGAACTGGTTGCAGAAAAA+CGG | - | chr1_3:58585609-58585628 | Msa0128720:CDS | 40.0% | |
| TGTTCAAAGGAGAAGCTTCA+AGG | + | chr1_3:58585658-58585677 | None:intergenic | 40.0% | |
| ATTGTCATGGAGGAAGTGAT+AGG | + | chr1_3:58585735-58585754 | None:intergenic | 40.0% | |
| ! | GGTGTTGAGGTGAAAACAAA+AGG | + | chr1_3:58585782-58585801 | None:intergenic | 40.0% |
| !! | AGAGATTGATTTGGGTGTTG+AGG | + | chr1_3:58585795-58585814 | None:intergenic | 40.0% |
| GAAGCATGAAAGCCAGAAAT+CGG | + | chr1_3:58584426-58584445 | None:intergenic | 40.0% | |
| AAAACTACATGGGACCAACA+TGG | + | chr1_3:58584458-58584477 | None:intergenic | 40.0% | |
| !!! | CTGGGTGACATCTTGTTTTT+TGG | + | chr1_3:58584509-58584528 | None:intergenic | 40.0% |
| AGCCAGATTTGCAGTAAACA+AGG | + | chr1_3:58584582-58584601 | None:intergenic | 40.0% | |
| CTTAGACATCGCAACTTAGT+TGG | + | chr1_3:58585352-58585371 | None:intergenic | 40.0% | |
| TTCGCATGCTATCCTTGTAA+CGG | + | chr1_3:58585495-58585514 | None:intergenic | 40.0% | |
| CCTGTTGAAACAATGTTGCA+AGG | + | chr1_3:58585592-58585611 | None:intergenic | 40.0% | |
| CCTTGCAACATTGTTTCAAC+AGG | - | chr1_3:58585589-58585608 | Msa0128720:intron | 40.0% | |
| AGGAACTGGTTGCAGAAAAA+CGG | - | chr1_3:58585609-58585628 | Msa0128720:CDS | 40.0% | |
| TGTTCAAAGGAGAAGCTTCA+AGG | + | chr1_3:58585658-58585677 | None:intergenic | 40.0% | |
| ATTGTCATGGAGGAAGTGAT+AGG | + | chr1_3:58585735-58585754 | None:intergenic | 40.0% | |
| ! | GGTGTTGAGGTGAAAACAAA+AGG | + | chr1_3:58585782-58585801 | None:intergenic | 40.0% |
| !! | AGAGATTGATTTGGGTGTTG+AGG | + | chr1_3:58585795-58585814 | None:intergenic | 40.0% |
| GCTTCTGATCACATCCATGT+TGG | - | chr1_3:58584441-58584460 | Msa0128720:CDS | 45.0% | |
| TATGCCAATGGCGATGACTA+TGG | - | chr1_3:58584481-58584500 | Msa0128720:CDS | 45.0% | |
| !! | GGCCTTGTTTACTGCAAATC+TGG | - | chr1_3:58584577-58584596 | Msa0128720:CDS | 45.0% |
| ! | CTCCGACCCAACAAATTTTG+AGG | - | chr1_3:58584730-58584749 | Msa0128720:intron | 45.0% |
| TGCGAAGCTGCTGATGAATA+TGG | - | chr1_3:58585509-58585528 | Msa0128720:intron | 45.0% | |
| GGAACTGGTTGCAGAAAAAC+GGG | - | chr1_3:58585610-58585629 | Msa0128720:CDS | 45.0% | |
| TGCAGAAAAACGGGTGCTAA+AGG | - | chr1_3:58585619-58585638 | Msa0128720:CDS | 45.0% | |
| GGTGAAAACAAAAGGTCCCA+CGG | + | chr1_3:58585774-58585793 | None:intergenic | 45.0% | |
| GCTTCTGATCACATCCATGT+TGG | - | chr1_3:58584441-58584460 | Msa0128720:CDS | 45.0% | |
| TATGCCAATGGCGATGACTA+TGG | - | chr1_3:58584481-58584500 | Msa0128720:CDS | 45.0% | |
| !! | GGCCTTGTTTACTGCAAATC+TGG | - | chr1_3:58584577-58584596 | Msa0128720:CDS | 45.0% |
| ! | CTCCGACCCAACAAATTTTG+AGG | - | chr1_3:58584730-58584749 | Msa0128720:intron | 45.0% |
| TGCGAAGCTGCTGATGAATA+TGG | - | chr1_3:58585509-58585528 | Msa0128720:intron | 45.0% | |
| GGAACTGGTTGCAGAAAAAC+GGG | - | chr1_3:58585610-58585629 | Msa0128720:CDS | 45.0% | |
| TGCAGAAAAACGGGTGCTAA+AGG | - | chr1_3:58585619-58585638 | Msa0128720:CDS | 45.0% | |
| GGTGAAAACAAAAGGTCCCA+CGG | + | chr1_3:58585774-58585793 | None:intergenic | 45.0% | |
| !! | AAAAATTTATCATTTAAATT+CGG | + | chr1_3:58584535-58584554 | None:intergenic | 5.0% |
| !!! | AAAATTGTTTTTTTAATAAA+AGG | + | chr1_3:58584941-58584960 | None:intergenic | 5.0% |
| !! | AAAAATTTATCATTTAAATT+CGG | + | chr1_3:58584535-58584554 | None:intergenic | 5.0% |
| !!! | AAAATTGTTTTTTTAATAAA+AGG | + | chr1_3:58584941-58584960 | None:intergenic | 5.0% |
| CATGTATAGGGGCCGTTACA+AGG | - | chr1_3:58585480-58585499 | Msa0128720:intron | 50.0% | |
| ! | AACGGGTGCTAAAGGAGTGT+AGG | - | chr1_3:58585627-58585646 | Msa0128720:CDS | 50.0% |
| ! | ACGGGTGCTAAAGGAGTGTA+GGG | - | chr1_3:58585628-58585647 | Msa0128720:CDS | 50.0% |
| CATGTATAGGGGCCGTTACA+AGG | - | chr1_3:58585480-58585499 | Msa0128720:intron | 50.0% | |
| ! | AACGGGTGCTAAAGGAGTGT+AGG | - | chr1_3:58585627-58585646 | Msa0128720:CDS | 50.0% |
| ! | ACGGGTGCTAAAGGAGTGTA+GGG | - | chr1_3:58585628-58585647 | Msa0128720:CDS | 50.0% |
| ! | GGTGCCATAGTCATCGCCAT+TGG | + | chr1_3:58584488-58584507 | None:intergenic | 55.0% |
| ! | GGTGCCATAGTCATCGCCAT+TGG | + | chr1_3:58584488-58584507 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58584406 | 58585823 | 58584406 | ID=Msa0128720;Name=Msa0128720 |
| chr1_3 | mRNA | 58584406 | 58585823 | 58584406 | ID=Msa0128720-mRNA-1;Parent=Msa0128720;Name=Msa0128720-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|183 |
| chr1_3 | exon | 58585607 | 58585823 | 58585607 | ID=Msa0128720-mRNA-1:exon:18909;Parent=Msa0128720-mRNA-1 |
| chr1_3 | exon | 58584406 | 58584740 | 58584406 | ID=Msa0128720-mRNA-1:exon:18908;Parent=Msa0128720-mRNA-1 |
| chr1_3 | CDS | 58585607 | 58585823 | 58585607 | ID=Msa0128720-mRNA-1:cds;Parent=Msa0128720-mRNA-1 |
| chr1_3 | CDS | 58584406 | 58584740 | 58584406 | ID=Msa0128720-mRNA-1:cds;Parent=Msa0128720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
