AlfalfaGEDB | Msa1133860

M. sativa cultivar zhongmu-4 / Msa1133860

KEGG: K15382
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944
PFAM: PF03083.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1133860	XP_013447780.1	98.039	255	5	0	1	255	14	268	3.95e-179	503

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1133860	sp\|P93332\|NOD3_MEDTR	96.863	255	8	0	1	255	14	268	1.89e-179	496

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1133860	A0A072TX72	98.039	255	5	0	1	255	14	268	1.89e-179	503

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1133860	0.802328	5.911759e-49	-8.615850e-47
Msa0011510	Msa1133860	0.800506	1.395971e-48	-8.615850e-47
Msa0024280	Msa1133860	0.854572	1.126028e-61	-8.615850e-47
Msa0025700	Msa1133860	0.808772	2.627430e-50	-8.615850e-47
Msa0045620	Msa1133860	0.817241	3.651693e-52	-8.615850e-47
Msa0048950	Msa1133860	0.842359	2.713742e-58	-8.615850e-47
Msa0059880	Msa1133860	0.849125	3.952737e-60	-8.615850e-47
Msa0060380	Msa1133860	0.829683	4.487277e-55	-8.615850e-47
Msa0069480	Msa1133860	0.801569	8.464373e-49	-8.615850e-47
Msa0072030	Msa1133860	0.803877	2.826809e-49	-8.615850e-47

Showing 1 to 10 of 235 entries

Previous1 2 3 4 5…24Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1133860	MtrunA17_Chr7g0214191	98.039	255	5	0	1	255	14	268	0.0	503
Msa1133860	MtrunA17_Chr7g0214181	80.083	241	40	3	1	238	14	249	3.48e-127	361
Msa1133860	MtrunA17_Chr5g0428281	63.710	248	84	2	1	248	15	256	2.35e-106	308
Msa1133860	MtrunA17_Chr8g0386011	55.349	215	92	2	1	211	14	228	2.98e-80	241
Msa1133860	MtrunA17_Chr3g0131951	48.780	246	120	3	1	245	76	316	2.74e-78	241
Msa1133860	MtrunA17_Chr8g0386001	47.368	247	106	3	1	246	14	237	3.47e-77	234
Msa1133860	MtrunA17_Chr7g0215601	55.610	205	91	0	1	205	15	219	8.39e-75	228
Msa1133860	MtrunA17_Chr3g0131961	47.012	251	114	4	1	250	15	247	5.38e-72	221
Msa1133860	MtrunA17_Chr5g0444031	53.030	198	93	0	5	202	38	235	6.81e-72	221
Msa1133860	MtrunA17_Chr2g0278491	48.035	229	90	5	43	246	1	225	9.24e-68	209

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1133860	AT5G13170.1	63.492	252	87	3	1	249	16	265	7.72e-108	313
Msa1133860	AT3G48740.1	50.189	265	121	3	1	254	16	280	1.40e-88	265
Msa1133860	AT5G23660.1	57.589	224	95	0	1	224	16	239	5.77e-88	263
Msa1133860	AT5G50790.1	48.327	269	118	2	1	248	14	282	8.50e-87	260
Msa1133860	AT5G50800.1	51.163	258	117	2	1	249	14	271	1.83e-79	241
Msa1133860	AT4G25010.1	49.064	267	119	4	1	250	14	280	1.96e-76	233
Msa1133860	AT2G39060.1	46.914	243	124	1	1	243	14	251	5.83e-71	218
Msa1133860	AT3G16690.1	39.091	220	131	2	1	218	10	228	3.27e-52	169
Msa1133860	AT4G15920.1	39.655	232	128	3	1	220	10	241	5.02e-52	169
Msa1133860	AT3G16690.3	39.091	220	131	2	1	218	45	263	5.64e-52	170

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Find 59 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGTTGGGTTTCGTAT+TGG	0.380441	7_4:-67601	Msa1133860:CDS
AATAATACCCTTGCATCTCT+TGG	0.455895	7_4:+68369	None:intergenic
AATACGAAACCCAACACATT+TGG	0.368529	7_4:+67603	None:intergenic
AATGTGTTGGGTTTCGTATT+GGG	0.328786	7_4:-67600	Msa1133860:CDS
ACCGTAGCCAAACCACATTG+TGG	0.726020	7_4:+67903	None:intergenic
AGAGTGAATGACAAATTGAA+AGG	0.622293	7_4:+67937	None:intergenic
AGGTAACGTCATTTCGTTCT+TGG	0.323739	7_4:-68692	Msa1133860:CDS
AGTGAGGAACCTATTGGCTC+TGG	0.490260	7_4:-67405	Msa1133860:CDS
ATACAAGAAGAAATCGACAG+AGG	0.715649	7_4:-68547	Msa1133860:CDS
ATACGAAACCCAACACATTT+GGG	0.439248	7_4:+67604	None:intergenic

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GCAAATAGATATACAAGTAC+TGG	-	chr7_4:67467-67486	Msa1133860:CDS	30.0%
TGTGTGTATAAACGGTTAAT+TGG	+	chr7_4:67748-67767	None:intergenic	30.0%
GTTACCTGTACATCAAATAT+AGG	+	chr7_4:67854-67873	None:intergenic	30.0%
CTCATTACCATAAACTCATT+TGG	-	chr7_4:68121-68140	Msa1133860:CDS	30.0%
GATGTACAATATGATGTAGA+TGG	+	chr7_4:68161-68180	None:intergenic	30.0%
AGAGTGAATGACAAATTGAA+AGG	+	chr7_4:68625-68644	None:intergenic	30.0%
TATTGTTATAGAGACCCAAT+TGG	-	chr7_4:69075-69094	Msa1133860:intron	30.0%
TGAACAAGAAAAGAAGAACA+AGG	-	chr7_4:69105-69124	Msa1133860:intron	30.0%
GAACAAGAAAAGAAGAACAA+GGG	-	chr7_4:69106-69125	Msa1133860:intron	30.0%
GCAAATAGATATACAAGTAC+TGG	-	chr7_4:67467-67486	Msa1133860:CDS	30.0%

Showing 1 to 10 of 186 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	67398	69183	67398	ID=Msa1133860;Name=Msa1133860
chr7_4	mRNA	67398	69183	67398	ID=Msa1133860-mRNA-1;Parent=Msa1133860;Name=Msa1133860-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0\|0\|0\|0.83\|1\|0.83\|6\|0\|255
chr7_4	exon	69177	69183	69177	ID=Msa1133860-mRNA-1:exon:29;Parent=Msa1133860-mRNA-1
chr7_4	exon	68676	68712	68676	ID=Msa1133860-mRNA-1:exon:28;Parent=Msa1133860-mRNA-1
chr7_4	exon	68377	68587	68377	ID=Msa1133860-mRNA-1:exon:27;Parent=Msa1133860-mRNA-1
chr7_4	exon	68100	68261	68100	ID=Msa1133860-mRNA-1:exon:26;Parent=Msa1133860-mRNA-1
chr7_4	exon	67876	67995	67876	ID=Msa1133860-mRNA-1:exon:25;Parent=Msa1133860-mRNA-1
chr7_4	exon	67398	67628	67398	ID=Msa1133860-mRNA-1:exon:24;Parent=Msa1133860-mRNA-1
chr7_4	CDS	69177	69183	69177	ID=Msa1133860-mRNA-1:cds;Parent=Msa1133860-mRNA-1
chr7_4	CDS	68676	68712	68676	ID=Msa1133860-mRNA-1:cds;Parent=Msa1133860-mRNA-1
chr7_4	CDS	68377	68587	68377	ID=Msa1133860-mRNA-1:cds;Parent=Msa1133860-mRNA-1
chr7_4	CDS	68100	68261	68100	ID=Msa1133860-mRNA-1:cds;Parent=Msa1133860-mRNA-1
chr7_4	CDS	67876	67995	67876	ID=Msa1133860-mRNA-1:cds;Parent=Msa1133860-mRNA-1
chr7_4	CDS	67398	67628	67398	ID=Msa1133860-mRNA-1:cds;Parent=Msa1133860-mRNA-1

Gene Sequence

>Msa1133860

ATGCTTGGTAACGTCATTTCGTTCTTGGTGTTCTTGGCTCCAATATCAACATTTTACCGTATATACAAGAAGAAATCGACAGAGGGTTTTCAGTCACTGCCTTACCTAGTAGCTTTGTTCAGCTCCATGCTTTGGTTGTACTATGCATTGCTAAAAAAAGATGCTTTTCTCCTCATTACCATAAACTCATTTGGATGTGTGGTAGAGACCATCTACATCATATTGTACATCATCTATGCACCAAGAGATGCAAGGAACTTAACTTTCAAGTTACTTTCGGCAATGAACGTGGGGTCCTTTGCTTTGATCCTCATAGTCACTAACTATGCCGTGCATGGTCCACTTCGTGTCCAAGTTCTTGGATGGGTTTGTGTTTCCCTTAGTGTTAGTGTCTTTGCAGCACCACTAAGCATTGTGGCGCAAGTTGTTCGTACAAAGAGTGTTGAGTTTATGCCTTTCAATTTGTCATTCACTCTCACATTGAGTGCCACAATGTGGTTTGGCTACGGTCTCTTCCTCAAGGACATATGCATTGCTCTCCCAAATGTGTTGGGTTTCGTATTGGGATTACTTCAGATGCTGCTGTATGCAATCTATAGGAATGGTGGGGAAAAAGCTATGAAAAAGGAAAAGAAAGCACCAATTGAGCCACTCAAAAGTATTGTTATAGAGACCCAATTGGAAAAAATTGAACAAGAAAAGAAGAACAAGGGTGATGATAATGAGGAAAAAGTTCAAAGTGAGGAACCTATTGGCTCTGGAGTTTAA

Protein sequence

>Msa1133860

MLGNVISFLVFLAPISTFYRIYKKKSTEGFQSLPYLVALFSSMLWLYYALLKKDAFLLITINSFGCVVETIYIILYIIYAPRDARNLTFKLLSAMNVGSFALILIVTNYAVHGPLRVQVLGWVCVSLSVSVFAAPLSIVAQVVRTKSVEFMPFNLSFTLTLSATMWFGYGLFLKDICIALPNVLGFVLGLLQMLLYAIYRNGGEKAMKKEKKAPIEPLKSIVIETQLEKIEQEKKNKGDDNEEKVQSEEPIGSGV*