Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447780 | sp|O81417|SRPP_ARATH | 40.113 | 177 | 91 | 2 | 1 | 177 | 1 | 162 | 5.18e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447780 | A0A396JXT1 | 93.956 | 182 | 7 | 1 | 1 | 182 | 1 | 178 | 2.98e-121 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa1447780 | 0.800345 | 1.505365e-48 | -8.615850e-47 |
| Msa0828350 | Msa1447780 | 0.801302 | 9.599646e-49 | -8.615850e-47 |
| Msa0128720 | Msa1447780 | 0.984579 | 5.677482e-161 | -8.615850e-47 |
| Msa0987020 | Msa1447780 | 0.802058 | 6.716823e-49 | -8.615850e-47 |
| Msa1003110 | Msa1447780 | 0.802293 | 6.009717e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447780 | MtrunA17_Chr1g0195201 | 93.956 | 182 | 7 | 1 | 1 | 182 | 1 | 178 | 5.74e-125 | 349 |
| Msa1447780 | MtrunA17_Chr1g0195171 | 50.388 | 129 | 62 | 2 | 54 | 182 | 313 | 439 | 1.01e-35 | 129 |
| Msa1447780 | MtrunA17_Chr1g0195181 | 48.837 | 129 | 64 | 2 | 54 | 182 | 454 | 580 | 2.30e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447780 | AT2G47540.1 | 45.109 | 184 | 77 | 4 | 5 | 182 | 6 | 171 | 2.66e-49 | 157 |
| Msa1447780 | AT4G02270.1 | 40.113 | 177 | 91 | 2 | 1 | 177 | 1 | 162 | 5.27e-42 | 139 |
| Msa1447780 | AT2G47530.1 | 36.842 | 133 | 76 | 4 | 53 | 180 | 54 | 183 | 1.66e-20 | 84.3 |
| Msa1447780 | AT3G62680.1 | 34.426 | 122 | 72 | 2 | 55 | 174 | 187 | 302 | 6.21e-17 | 77.0 |
| Msa1447780 | AT1G54970.1 | 33.058 | 121 | 72 | 2 | 55 | 175 | 213 | 324 | 8.57e-15 | 71.2 |
Find 45 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCATTTAAATTCGGTTTC+TGG | 0.145695 | tig0031929:+20096 | None:intergenic |
| GGCCTTGTTTACTGCAAATC+TGG | 0.310161 | tig0031929:-20044 | Msa1447780:CDS |
| CTAATCATTAGAGATTGATT+TGG | 0.324380 | tig0031929:+18851 | None:intergenic |
| AGAGAGTAATTACCTTCAAT+TGG | 0.329452 | tig0031929:+20008 | None:intergenic |
| ATCATTTAAATTCGGTTTCT+GGG | 0.344201 | tig0031929:+20097 | None:intergenic |
| TGCGAAGCTGCTGATGAATA+TGG | 0.352523 | tig0031929:-19143 | Msa1447780:CDS |
| CCTTGCAACATTGTTTCAAC+AGG | 0.370546 | tig0031929:-19063 | Msa1447780:CDS |
| TCCAACAATATTGGTATTCA+AGG | 0.371305 | tig0031929:-20065 | Msa1447780:CDS |
| TAATCATTAGAGATTGATTT+GGG | 0.390903 | tig0031929:+18852 | None:intergenic |
| AACATTGTTTCAACAGGAAC+TGG | 0.415978 | tig0031929:-19057 | Msa1447780:CDS |
| GCCTTGAATACCAATATTGT+TGG | 0.419942 | tig0031929:+20064 | None:intergenic |
| TATGCCAATGGCGATGACTA+TGG | 0.437151 | tig0031929:-20140 | Msa1447780:CDS |
| GAAGCATGAAAGCCAGAAAT+CGG | 0.449214 | tig0031929:+20198 | None:intergenic |
| GAGAGTAATTACCTTCAATT+GGG | 0.453631 | tig0031929:+20009 | None:intergenic |
| GCATCATTTAAGAAAGAGAA+TGG | 0.465719 | tig0031929:+19107 | None:intergenic |
| CATGTATAGGGGCCGTTACA+AGG | 0.468866 | tig0031929:-19172 | Msa1447780:intron |
| GATTTCAACAAAGGGATTAG+TGG | 0.469295 | tig0031929:-18957 | Msa1447780:CDS |
| TGTTCAAAGGAGAAGCTTCA+AGG | 0.472796 | tig0031929:+18997 | None:intergenic |
| GGTGTTGAGGTGAAAACAAA+AGG | 0.484964 | tig0031929:+18873 | None:intergenic |
| ATCCCACAGATTTCAACAAA+GGG | 0.486932 | tig0031929:-18965 | Msa1447780:CDS |
| TCTAAACTCATCCCAATTGA+AGG | 0.500264 | tig0031929:-20020 | Msa1447780:intron |
| ACAAATTCATCTTATTGTCA+TGG | 0.505797 | tig0031929:+18907 | None:intergenic |
| GGTGCCATAGTCATCGCCAT+TGG | 0.512980 | tig0031929:+20136 | None:intergenic |
| ATCCCTTTGTTGAAATCTGT+GGG | 0.513593 | tig0031929:+18963 | None:intergenic |
| AATCCCTTTGTTGAAATCTG+TGG | 0.518518 | tig0031929:+18962 | None:intergenic |
| AATGATGCAACCAATGCAAA+GGG | 0.526621 | tig0031929:-19092 | Msa1447780:CDS |
| GGATAATTGCAGTTGTTCAA+AGG | 0.534014 | tig0031929:+18984 | None:intergenic |
| TTGGCATAAGCAAAACTACA+TGG | 0.534760 | tig0031929:+20155 | None:intergenic |
| AAGGAAATATCCCTTTGCAT+TGG | 0.551886 | tig0031929:+19082 | None:intergenic |
| AAATGATGCAACCAATGCAA+AGG | 0.556892 | tig0031929:-19093 | Msa1447780:CDS |
| ATTGTCATGGAGGAAGTGAT+AGG | 0.561247 | tig0031929:+18920 | None:intergenic |
| TATCCCACAGATTTCAACAA+AGG | 0.562418 | tig0031929:-18966 | Msa1447780:CDS |
| CCTGTTGAAACAATGTTGCA+AGG | 0.563372 | tig0031929:+19063 | None:intergenic |
| AGAGATTGATTTGGGTGTTG+AGG | 0.565424 | tig0031929:+18860 | None:intergenic |
| ACGGGTGCTAAAGGAGTGTA+GGG | 0.569532 | tig0031929:-19024 | Msa1447780:CDS |
| AGCCAGATTTGCAGTAAACA+AGG | 0.571544 | tig0031929:+20042 | None:intergenic |
| GCTTCTGATCACATCCATGT+TGG | 0.575842 | tig0031929:-20180 | Msa1447780:CDS |
| AACGGGTGCTAAAGGAGTGT+AGG | 0.594859 | tig0031929:-19025 | Msa1447780:CDS |
| TAAGATGAATTTGTATACCG+TGG | 0.595465 | tig0031929:-18898 | Msa1447780:CDS |
| TTCGCATGCTATCCTTGTAA+CGG | 0.619603 | tig0031929:+19160 | None:intergenic |
| AAGATGAATTTGTATACCGT+GGG | 0.632235 | tig0031929:-18897 | Msa1447780:CDS |
| AATTCATCTTATTGTCATGG+AGG | 0.657555 | tig0031929:+18910 | None:intergenic |
| TGGCATAAGCAAAACTACAT+GGG | 0.671717 | tig0031929:+20156 | None:intergenic |
| AAAACTACATGGGACCAACA+TGG | 0.678235 | tig0031929:+20166 | None:intergenic |
| GGTGAAAACAAAAGGTCCCA+CGG | 0.678253 | tig0031929:+18881 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATTTTGAAAAAACT+AGG | + | tig0031929:19463-19482 | None:intergenic | 10.0% |
| !!! | AAATATATTTTGAAAAAACT+AGG | + | tig0031929:19463-19482 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTCCAACAATAT+TGG | - | tig0031929:18992-19011 | Msa1447780:CDS | 15.0% |
| !!! | TTCTGTCTTTTTTTTATTAA+AGG | - | tig0031929:19111-19130 | Msa1447780:CDS | 15.0% |
| !!! | TCTGTCTTTTTTTTATTAAA+GGG | - | tig0031929:19112-19131 | Msa1447780:CDS | 15.0% |
| !! | ATTTACTAAAACATTATTAC+AGG | + | tig0031929:19236-19255 | None:intergenic | 15.0% |
| !!! | ATTTTGACTAAAAAATGAAA+AGG | - | tig0031929:19405-19424 | Msa1447780:intron | 15.0% |
| !!! | TTTTGACTAAAAAATGAAAA+GGG | - | tig0031929:19406-19425 | Msa1447780:intron | 15.0% |
| !!! | TTTTCAATCAATAATAACAA+CGG | - | tig0031929:19681-19700 | Msa1447780:intron | 15.0% |
| !! | TCTTTATTGAGATAATATAT+AGG | - | tig0031929:19713-19732 | Msa1447780:intron | 15.0% |
| !! | CTTTATTGAGATAATATATA+GGG | - | tig0031929:19714-19733 | Msa1447780:intron | 15.0% |
| !!! | AAATTTTTTTCCAACAATAT+TGG | - | tig0031929:18992-19011 | Msa1447780:CDS | 15.0% |
| !!! | TTCTGTCTTTTTTTTATTAA+AGG | - | tig0031929:19111-19130 | Msa1447780:CDS | 15.0% |
| !!! | TCTGTCTTTTTTTTATTAAA+GGG | - | tig0031929:19112-19131 | Msa1447780:CDS | 15.0% |
| !! | ATTTACTAAAACATTATTAC+AGG | + | tig0031929:19236-19255 | None:intergenic | 15.0% |
| !!! | ATTTTGACTAAAAAATGAAA+AGG | - | tig0031929:19405-19424 | Msa1447780:intron | 15.0% |
| !!! | TTTTGACTAAAAAATGAAAA+GGG | - | tig0031929:19406-19425 | Msa1447780:intron | 15.0% |
| !!! | TTTTCAATCAATAATAACAA+CGG | - | tig0031929:19681-19700 | Msa1447780:intron | 15.0% |
| !! | TCTTTATTGAGATAATATAT+AGG | - | tig0031929:19713-19732 | Msa1447780:intron | 15.0% |
| !! | CTTTATTGAGATAATATATA+GGG | - | tig0031929:19714-19733 | Msa1447780:intron | 15.0% |
| !! | ACCATTTATTAAACTGATAT+AGG | - | tig0031929:19293-19312 | Msa1447780:intron | 20.0% |
| !! | CCATTTATTAAACTGATATA+GGG | - | tig0031929:19294-19313 | Msa1447780:intron | 20.0% |
| !!! | TTCAAAAGAAATGATTTTCA+TGG | + | tig0031929:19504-19523 | None:intergenic | 20.0% |
| !!! | TAATCATTAGAGATTGATTT+GGG | + | tig0031929:20217-20236 | None:intergenic | 20.0% |
| !! | ACCATTTATTAAACTGATAT+AGG | - | tig0031929:19293-19312 | Msa1447780:intron | 20.0% |
| !! | CCATTTATTAAACTGATATA+GGG | - | tig0031929:19294-19313 | Msa1447780:intron | 20.0% |
| !!! | TTCAAAAGAAATGATTTTCA+TGG | + | tig0031929:19504-19523 | None:intergenic | 20.0% |
| !!! | TAATCATTAGAGATTGATTT+GGG | + | tig0031929:20217-20236 | None:intergenic | 20.0% |
| !! | TTTTACAAATATCCGATTTC+TGG | - | tig0031929:18856-18875 | Msa1447780:CDS | 25.0% |
| ! | ATCATTTAAATTCGGTTTCT+GGG | + | tig0031929:18972-18991 | None:intergenic | 25.0% |
| ! | TATCATTTAAATTCGGTTTC+TGG | + | tig0031929:18973-18992 | None:intergenic | 25.0% |
| !! | CTTAAACCTCAAAATTTGTT+GGG | + | tig0031929:19184-19203 | None:intergenic | 25.0% |
| ! | CCCTATATCAGTTTAATAAA+TGG | + | tig0031929:19297-19316 | None:intergenic | 25.0% |
| !! | TTTTCATGTTGAAGTTTTTG+TGG | + | tig0031929:19434-19453 | None:intergenic | 25.0% |
| ! | TTCATGGTTATTACATTTCT+AGG | + | tig0031929:19488-19507 | None:intergenic | 25.0% |
| !!! | TTTATTTTAATGAACGAGTG+TGG | + | tig0031929:19806-19825 | None:intergenic | 25.0% |
| ! | ACAAATTCATCTTATTGTCA+TGG | + | tig0031929:20162-20181 | None:intergenic | 25.0% |
| ! | CTAATCATTAGAGATTGATT+TGG | + | tig0031929:20218-20237 | None:intergenic | 25.0% |
| !! | TTTTACAAATATCCGATTTC+TGG | - | tig0031929:18856-18875 | Msa1447780:CDS | 25.0% |
| ! | ATCATTTAAATTCGGTTTCT+GGG | + | tig0031929:18972-18991 | None:intergenic | 25.0% |
| ! | TATCATTTAAATTCGGTTTC+TGG | + | tig0031929:18973-18992 | None:intergenic | 25.0% |
| !! | CTTAAACCTCAAAATTTGTT+GGG | + | tig0031929:19184-19203 | None:intergenic | 25.0% |
| ! | CCCTATATCAGTTTAATAAA+TGG | + | tig0031929:19297-19316 | None:intergenic | 25.0% |
| !! | TTTTCATGTTGAAGTTTTTG+TGG | + | tig0031929:19434-19453 | None:intergenic | 25.0% |
| ! | TTCATGGTTATTACATTTCT+AGG | + | tig0031929:19488-19507 | None:intergenic | 25.0% |
| !!! | TTTATTTTAATGAACGAGTG+TGG | + | tig0031929:19806-19825 | None:intergenic | 25.0% |
| ! | ACAAATTCATCTTATTGTCA+TGG | + | tig0031929:20162-20181 | None:intergenic | 25.0% |
| ! | CTAATCATTAGAGATTGATT+TGG | + | tig0031929:20218-20237 | None:intergenic | 25.0% |
| TCCAACAATATTGGTATTCA+AGG | - | tig0031929:19001-19020 | Msa1447780:CDS | 30.0% | |
| GAGAGTAATTACCTTCAATT+GGG | + | tig0031929:19060-19079 | None:intergenic | 30.0% | |
| AGAGAGTAATTACCTTCAAT+TGG | + | tig0031929:19061-19080 | None:intergenic | 30.0% | |
| AGTATTAGACTACTTTGACA+TGG | - | tig0031929:19152-19171 | Msa1447780:CDS | 30.0% | |
| CCTTAAACCTCAAAATTTGT+TGG | + | tig0031929:19185-19204 | None:intergenic | 30.0% | |
| !!! | CCAACAAATTTTGAGGTTTA+AGG | - | tig0031929:19182-19201 | Msa1447780:intron | 30.0% |
| CAATCAATAATAACAACGGT+TGG | - | tig0031929:19685-19704 | Msa1447780:intron | 30.0% | |
| AAACATATTCGTGCATGTAT+AGG | - | tig0031929:19881-19900 | Msa1447780:intron | 30.0% | |
| AACATATTCGTGCATGTATA+GGG | - | tig0031929:19882-19901 | Msa1447780:intron | 30.0% | |
| GCATCATTTAAGAAAGAGAA+TGG | + | tig0031929:19962-19981 | None:intergenic | 30.0% | |
| AATTCATCTTATTGTCATGG+AGG | + | tig0031929:20159-20178 | None:intergenic | 30.0% | |
| TAAGATGAATTTGTATACCG+TGG | - | tig0031929:20168-20187 | Msa1447780:CDS | 30.0% | |
| AAGATGAATTTGTATACCGT+GGG | - | tig0031929:20169-20188 | Msa1447780:CDS | 30.0% | |
| TCCAACAATATTGGTATTCA+AGG | - | tig0031929:19001-19020 | Msa1447780:CDS | 30.0% | |
| GAGAGTAATTACCTTCAATT+GGG | + | tig0031929:19060-19079 | None:intergenic | 30.0% | |
| AGAGAGTAATTACCTTCAAT+TGG | + | tig0031929:19061-19080 | None:intergenic | 30.0% | |
| AGTATTAGACTACTTTGACA+TGG | - | tig0031929:19152-19171 | Msa1447780:CDS | 30.0% | |
| CCTTAAACCTCAAAATTTGT+TGG | + | tig0031929:19185-19204 | None:intergenic | 30.0% | |
| !!! | CCAACAAATTTTGAGGTTTA+AGG | - | tig0031929:19182-19201 | Msa1447780:intron | 30.0% |
| CAATCAATAATAACAACGGT+TGG | - | tig0031929:19685-19704 | Msa1447780:intron | 30.0% | |
| AAACATATTCGTGCATGTAT+AGG | - | tig0031929:19881-19900 | Msa1447780:intron | 30.0% | |
| AACATATTCGTGCATGTATA+GGG | - | tig0031929:19882-19901 | Msa1447780:intron | 30.0% | |
| GCATCATTTAAGAAAGAGAA+TGG | + | tig0031929:19962-19981 | None:intergenic | 30.0% | |
| AATTCATCTTATTGTCATGG+AGG | + | tig0031929:20159-20178 | None:intergenic | 30.0% | |
| TAAGATGAATTTGTATACCG+TGG | - | tig0031929:20168-20187 | Msa1447780:CDS | 30.0% | |
| AAGATGAATTTGTATACCGT+GGG | - | tig0031929:20169-20188 | Msa1447780:CDS | 30.0% | |
| TGGCATAAGCAAAACTACAT+GGG | + | tig0031929:18913-18932 | None:intergenic | 35.0% | |
| TTGGCATAAGCAAAACTACA+TGG | + | tig0031929:18914-18933 | None:intergenic | 35.0% | |
| !! | TGTAGTTTTGCTTATGCCAA+TGG | - | tig0031929:18914-18933 | Msa1447780:CDS | 35.0% |
| GCCTTGAATACCAATATTGT+TGG | + | tig0031929:19005-19024 | None:intergenic | 35.0% | |
| TCTAAACTCATCCCAATTGA+AGG | - | tig0031929:19046-19065 | Msa1447780:CDS | 35.0% | |
| !! | AACCTCAAAATTTGTTGGGT+CGG | + | tig0031929:19180-19199 | None:intergenic | 35.0% |
| ! | GTTTAAGGCACATGTTAAGA+TGG | - | tig0031929:19197-19216 | Msa1447780:intron | 35.0% |
| TGAGATAATATATAGGGTCG+CGG | - | tig0031929:19720-19739 | Msa1447780:intron | 35.0% | |
| ACATATTCGTGCATGTATAG+GGG | - | tig0031929:19883-19902 | Msa1447780:intron | 35.0% | |
| AAATGATGCAACCAATGCAA+AGG | - | tig0031929:19973-19992 | Msa1447780:intron | 35.0% | |
| AATGATGCAACCAATGCAAA+GGG | - | tig0031929:19974-19993 | Msa1447780:intron | 35.0% | |
| AAGGAAATATCCCTTTGCAT+TGG | + | tig0031929:19987-20006 | None:intergenic | 35.0% | |
| AACATTGTTTCAACAGGAAC+TGG | - | tig0031929:20009-20028 | Msa1447780:intron | 35.0% | |
| GGATAATTGCAGTTGTTCAA+AGG | + | tig0031929:20085-20104 | None:intergenic | 35.0% | |
| TATCCCACAGATTTCAACAA+AGG | - | tig0031929:20100-20119 | Msa1447780:CDS | 35.0% | |
| ATCCCACAGATTTCAACAAA+GGG | - | tig0031929:20101-20120 | Msa1447780:CDS | 35.0% | |
| ATCCCTTTGTTGAAATCTGT+GGG | + | tig0031929:20106-20125 | None:intergenic | 35.0% | |
| AATCCCTTTGTTGAAATCTG+TGG | + | tig0031929:20107-20126 | None:intergenic | 35.0% | |
| GATTTCAACAAAGGGATTAG+TGG | - | tig0031929:20109-20128 | Msa1447780:CDS | 35.0% | |
| TGGCATAAGCAAAACTACAT+GGG | + | tig0031929:18913-18932 | None:intergenic | 35.0% | |
| TTGGCATAAGCAAAACTACA+TGG | + | tig0031929:18914-18933 | None:intergenic | 35.0% | |
| !! | TGTAGTTTTGCTTATGCCAA+TGG | - | tig0031929:18914-18933 | Msa1447780:CDS | 35.0% |
| GCCTTGAATACCAATATTGT+TGG | + | tig0031929:19005-19024 | None:intergenic | 35.0% | |
| TCTAAACTCATCCCAATTGA+AGG | - | tig0031929:19046-19065 | Msa1447780:CDS | 35.0% | |
| !! | AACCTCAAAATTTGTTGGGT+CGG | + | tig0031929:19180-19199 | None:intergenic | 35.0% |
| ! | GTTTAAGGCACATGTTAAGA+TGG | - | tig0031929:19197-19216 | Msa1447780:intron | 35.0% |
| TGAGATAATATATAGGGTCG+CGG | - | tig0031929:19720-19739 | Msa1447780:intron | 35.0% | |
| ACATATTCGTGCATGTATAG+GGG | - | tig0031929:19883-19902 | Msa1447780:intron | 35.0% | |
| AAATGATGCAACCAATGCAA+AGG | - | tig0031929:19973-19992 | Msa1447780:intron | 35.0% | |
| AATGATGCAACCAATGCAAA+GGG | - | tig0031929:19974-19993 | Msa1447780:intron | 35.0% | |
| AAGGAAATATCCCTTTGCAT+TGG | + | tig0031929:19987-20006 | None:intergenic | 35.0% | |
| AACATTGTTTCAACAGGAAC+TGG | - | tig0031929:20009-20028 | Msa1447780:intron | 35.0% | |
| GGATAATTGCAGTTGTTCAA+AGG | + | tig0031929:20085-20104 | None:intergenic | 35.0% | |
| TATCCCACAGATTTCAACAA+AGG | - | tig0031929:20100-20119 | Msa1447780:CDS | 35.0% | |
| ATCCCACAGATTTCAACAAA+GGG | - | tig0031929:20101-20120 | Msa1447780:CDS | 35.0% | |
| ATCCCTTTGTTGAAATCTGT+GGG | + | tig0031929:20106-20125 | None:intergenic | 35.0% | |
| AATCCCTTTGTTGAAATCTG+TGG | + | tig0031929:20107-20126 | None:intergenic | 35.0% | |
| GATTTCAACAAAGGGATTAG+TGG | - | tig0031929:20109-20128 | Msa1447780:CDS | 35.0% | |
| GAAGCATGAAAGCCAGAAAT+CGG | + | tig0031929:18871-18890 | None:intergenic | 40.0% | |
| AAAACTACATGGGACCAACA+TGG | + | tig0031929:18903-18922 | None:intergenic | 40.0% | |
| !!! | CTGGGTGACATCTTGTTTTT+TGG | + | tig0031929:18954-18973 | None:intergenic | 40.0% |
| AGCCAGATTTGCAGTAAACA+AGG | + | tig0031929:19027-19046 | None:intergenic | 40.0% | |
| CTTAGACATCGCAACTTAGT+TGG | + | tig0031929:19766-19785 | None:intergenic | 40.0% | |
| CGAGTGTGGTTAAACATCAA+GGG | + | tig0031929:19792-19811 | None:intergenic | 40.0% | |
| ACGAGTGTGGTTAAACATCA+AGG | + | tig0031929:19793-19812 | None:intergenic | 40.0% | |
| TTCGCATGCTATCCTTGTAA+CGG | + | tig0031929:19909-19928 | None:intergenic | 40.0% | |
| CCTGTTGAAACAATGTTGCA+AGG | + | tig0031929:20006-20025 | None:intergenic | 40.0% | |
| CCTTGCAACATTGTTTCAAC+AGG | - | tig0031929:20003-20022 | Msa1447780:intron | 40.0% | |
| AGGAACTGGTTGCAGAAAAA+CGG | - | tig0031929:20023-20042 | Msa1447780:CDS | 40.0% | |
| TGTTCAAAGGAGAAGCTTCA+AGG | + | tig0031929:20072-20091 | None:intergenic | 40.0% | |
| ATTGTCATGGAGGAAGTGAT+AGG | + | tig0031929:20149-20168 | None:intergenic | 40.0% | |
| ! | GGTGTTGAGGTGAAAACAAA+AGG | + | tig0031929:20196-20215 | None:intergenic | 40.0% |
| !! | AGAGATTGATTTGGGTGTTG+AGG | + | tig0031929:20209-20228 | None:intergenic | 40.0% |
| GAAGCATGAAAGCCAGAAAT+CGG | + | tig0031929:18871-18890 | None:intergenic | 40.0% | |
| AAAACTACATGGGACCAACA+TGG | + | tig0031929:18903-18922 | None:intergenic | 40.0% | |
| !!! | CTGGGTGACATCTTGTTTTT+TGG | + | tig0031929:18954-18973 | None:intergenic | 40.0% |
| AGCCAGATTTGCAGTAAACA+AGG | + | tig0031929:19027-19046 | None:intergenic | 40.0% | |
| CTTAGACATCGCAACTTAGT+TGG | + | tig0031929:19766-19785 | None:intergenic | 40.0% | |
| CGAGTGTGGTTAAACATCAA+GGG | + | tig0031929:19792-19811 | None:intergenic | 40.0% | |
| ACGAGTGTGGTTAAACATCA+AGG | + | tig0031929:19793-19812 | None:intergenic | 40.0% | |
| TTCGCATGCTATCCTTGTAA+CGG | + | tig0031929:19909-19928 | None:intergenic | 40.0% | |
| CCTGTTGAAACAATGTTGCA+AGG | + | tig0031929:20006-20025 | None:intergenic | 40.0% | |
| CCTTGCAACATTGTTTCAAC+AGG | - | tig0031929:20003-20022 | Msa1447780:intron | 40.0% | |
| AGGAACTGGTTGCAGAAAAA+CGG | - | tig0031929:20023-20042 | Msa1447780:CDS | 40.0% | |
| TGTTCAAAGGAGAAGCTTCA+AGG | + | tig0031929:20072-20091 | None:intergenic | 40.0% | |
| ATTGTCATGGAGGAAGTGAT+AGG | + | tig0031929:20149-20168 | None:intergenic | 40.0% | |
| ! | GGTGTTGAGGTGAAAACAAA+AGG | + | tig0031929:20196-20215 | None:intergenic | 40.0% |
| !! | AGAGATTGATTTGGGTGTTG+AGG | + | tig0031929:20209-20228 | None:intergenic | 40.0% |
| GCTTCTGATCACATCCATGT+TGG | - | tig0031929:18886-18905 | Msa1447780:CDS | 45.0% | |
| TATGCCAATGGCGATGACTA+TGG | - | tig0031929:18926-18945 | Msa1447780:CDS | 45.0% | |
| !! | GGCCTTGTTTACTGCAAATC+TGG | - | tig0031929:19022-19041 | Msa1447780:CDS | 45.0% |
| ! | CTCCGACCCAACAAATTTTG+AGG | - | tig0031929:19175-19194 | Msa1447780:intron | 45.0% |
| TGCGAAGCTGCTGATGAATA+TGG | - | tig0031929:19923-19942 | Msa1447780:intron | 45.0% | |
| GGAACTGGTTGCAGAAAAAC+GGG | - | tig0031929:20024-20043 | Msa1447780:CDS | 45.0% | |
| TGCAGAAAAACGGGTGCTAA+AGG | - | tig0031929:20033-20052 | Msa1447780:CDS | 45.0% | |
| GGTGAAAACAAAAGGTCCCA+CGG | + | tig0031929:20188-20207 | None:intergenic | 45.0% | |
| GCTTCTGATCACATCCATGT+TGG | - | tig0031929:18886-18905 | Msa1447780:CDS | 45.0% | |
| TATGCCAATGGCGATGACTA+TGG | - | tig0031929:18926-18945 | Msa1447780:CDS | 45.0% | |
| !! | GGCCTTGTTTACTGCAAATC+TGG | - | tig0031929:19022-19041 | Msa1447780:CDS | 45.0% |
| ! | CTCCGACCCAACAAATTTTG+AGG | - | tig0031929:19175-19194 | Msa1447780:intron | 45.0% |
| TGCGAAGCTGCTGATGAATA+TGG | - | tig0031929:19923-19942 | Msa1447780:intron | 45.0% | |
| GGAACTGGTTGCAGAAAAAC+GGG | - | tig0031929:20024-20043 | Msa1447780:CDS | 45.0% | |
| TGCAGAAAAACGGGTGCTAA+AGG | - | tig0031929:20033-20052 | Msa1447780:CDS | 45.0% | |
| GGTGAAAACAAAAGGTCCCA+CGG | + | tig0031929:20188-20207 | None:intergenic | 45.0% | |
| !! | AAAAATTTATCATTTAAATT+CGG | + | tig0031929:18980-18999 | None:intergenic | 5.0% |
| !!! | AAAATTGTTTTTTTAATAAA+AGG | + | tig0031929:19390-19409 | None:intergenic | 5.0% |
| !! | AAAAATTTATCATTTAAATT+CGG | + | tig0031929:18980-18999 | None:intergenic | 5.0% |
| !!! | AAAATTGTTTTTTTAATAAA+AGG | + | tig0031929:19390-19409 | None:intergenic | 5.0% |
| CATGTATAGGGGCCGTTACA+AGG | - | tig0031929:19894-19913 | Msa1447780:intron | 50.0% | |
| ! | AACGGGTGCTAAAGGAGTGT+AGG | - | tig0031929:20041-20060 | Msa1447780:CDS | 50.0% |
| ! | ACGGGTGCTAAAGGAGTGTA+GGG | - | tig0031929:20042-20061 | Msa1447780:CDS | 50.0% |
| CATGTATAGGGGCCGTTACA+AGG | - | tig0031929:19894-19913 | Msa1447780:intron | 50.0% | |
| ! | AACGGGTGCTAAAGGAGTGT+AGG | - | tig0031929:20041-20060 | Msa1447780:CDS | 50.0% |
| ! | ACGGGTGCTAAAGGAGTGTA+GGG | - | tig0031929:20042-20061 | Msa1447780:CDS | 50.0% |
| ! | GGTGCCATAGTCATCGCCAT+TGG | + | tig0031929:18933-18952 | None:intergenic | 55.0% |
| ! | GGTGCCATAGTCATCGCCAT+TGG | + | tig0031929:18933-18952 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031929 | gene | 18851 | 20237 | 18851 | ID=Msa1447780;Name=Msa1447780 |
| tig0031929 | mRNA | 18851 | 20237 | 18851 | ID=Msa1447780-mRNA-1;Parent=Msa1447780;Name=Msa1447780-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|183 |
| tig0031929 | exon | 20021 | 20237 | 20021 | ID=Msa1447780-mRNA-1:exon:16075;Parent=Msa1447780-mRNA-1 |
| tig0031929 | exon | 18851 | 19185 | 18851 | ID=Msa1447780-mRNA-1:exon:16074;Parent=Msa1447780-mRNA-1 |
| tig0031929 | CDS | 20021 | 20237 | 20021 | ID=Msa1447780-mRNA-1:cds;Parent=Msa1447780-mRNA-1 |
| tig0031929 | CDS | 18851 | 19185 | 18851 | ID=Msa1447780-mRNA-1:cds;Parent=Msa1447780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
