AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003110 MtrunA17_Chr7g0214191 98.039 255 5 0 1 255 14 268 0.0 503
Msa1003110 MtrunA17_Chr7g0214181 80.083 241 40 3 1 238 14 249 3.48e-127 361
Msa1003110 MtrunA17_Chr5g0428281 63.710 248 84 2 1 248 15 256 2.35e-106 308
Msa1003110 MtrunA17_Chr8g0386011 55.349 215 92 2 1 211 14 228 2.98e-80 241
Msa1003110 MtrunA17_Chr3g0131951 48.780 246 120 3 1 245 76 316 2.74e-78 241
Msa1003110 MtrunA17_Chr8g0386001 47.368 247 106 3 1 246 14 237 3.47e-77 234
Msa1003110 MtrunA17_Chr7g0215601 55.610 205 91 0 1 205 15 219 8.39e-75 228
Msa1003110 MtrunA17_Chr3g0131961 47.012 251 114 4 1 250 15 247 5.38e-72 221
Msa1003110 MtrunA17_Chr5g0444031 53.030 198 93 0 5 202 38 235 6.81e-72 221
Msa1003110 MtrunA17_Chr2g0278491 48.035 229 90 5 43 246 1 225 9.24e-68 209
Msa1003110 MtrunA17_Chr2g0295681 42.654 211 121 0 1 211 10 220 4.79e-52 169
Msa1003110 MtrunA17_Chr3g0125861 35.950 242 146 4 1 240 10 244 1.17e-43 148
Msa1003110 MtrunA17_Chr1g0159431 37.449 243 142 4 1 241 10 244 7.21e-43 145
Msa1003110 MtrunA17_Chr6g0450941 37.104 221 129 6 1 214 86 303 4.62e-40 140
Msa1003110 MtrunA17_Chr8g0359261 38.073 218 125 3 3 218 21 230 9.37e-40 137
Msa1003110 MtrunA17_Chr3g0119951 34.800 250 153 5 1 243 13 259 5.40e-39 136
Msa1003110 MtrunA17_Chr1g0158931 33.600 250 151 5 1 244 11 251 1.33e-36 130
Msa1003110 MtrunA17_Chr2g0314571 38.073 218 123 6 3 215 21 231 2.84e-36 128
Msa1003110 MtrunA17_Chr3g0119991 34.440 241 148 5 10 243 1 238 2.97e-36 129
Msa1003110 MtrunA17_Chr8g0388621 33.333 240 148 4 1 237 15 245 3.45e-36 129
Msa1003110 MtrunA17_Chr3g0126411 31.120 241 155 5 1 232 11 249 4.26e-34 123
Msa1003110 MtrunA17_Chr3g0126421 30.579 242 155 5 1 232 11 249 5.05e-34 123
Msa1003110 MtrunA17_Chr6g0450951 38.095 189 108 5 17 199 6 191 1.01e-32 119
Msa1003110 MtrunA17_Chr6g0450931 33.990 203 127 5 17 214 6 206 8.59e-31 114
Msa1003110 MtrunA17_Chr4g0059191 31.220 205 135 2 12 214 1 201 3.95e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003110 AT5G13170.1 63.492 252 87 3 1 249 16 265 7.72e-108 313
Msa1003110 AT3G48740.1 50.189 265 121 3 1 254 16 280 1.40e-88 265
Msa1003110 AT5G23660.1 57.589 224 95 0 1 224 16 239 5.77e-88 263
Msa1003110 AT5G50790.1 48.327 269 118 2 1 248 14 282 8.50e-87 260
Msa1003110 AT5G50800.1 51.163 258 117 2 1 249 14 271 1.83e-79 241
Msa1003110 AT4G25010.1 49.064 267 119 4 1 250 14 280 1.96e-76 233
Msa1003110 AT2G39060.1 46.914 243 124 1 1 243 14 251 5.83e-71 218
Msa1003110 AT3G16690.1 39.091 220 131 2 1 218 10 228 3.27e-52 169
Msa1003110 AT4G15920.1 39.655 232 128 3 1 220 10 241 5.02e-52 169
Msa1003110 AT3G16690.3 39.091 220 131 2 1 218 45 263 5.64e-52 170
Msa1003110 AT1G21460.1 38.153 249 139 4 1 246 10 246 1.15e-47 159
Msa1003110 AT4G10850.1 34.156 243 153 4 1 236 15 257 1.08e-39 138
Msa1003110 AT5G53190.1 32.692 260 144 8 1 244 11 255 1.41e-35 128
Msa1003110 AT5G40260.1 36.866 217 126 6 1 211 13 224 3.31e-35 126
Msa1003110 AT5G62850.1 34.091 220 134 5 1 212 13 229 3.78e-35 126
Msa1003110 AT1G21460.2 38.860 193 115 2 1 191 10 201 1.80e-34 123
Msa1003110 AT1G66770.1 32.719 217 139 3 1 212 15 229 3.30e-33 121
Msa1003110 AT3G14770.1 36.771 223 119 8 3 215 21 231 5.19e-33 120
Msa1003110 AT5G40260.2 37.989 179 105 4 1 174 13 190 2.08e-31 115
Msa1003110 AT5G62850.2 34.857 175 106 4 1 170 13 184 9.29e-28 106
Msa1003110 AT3G28007.1 31.837 245 152 4 3 244 15 247 2.95e-27 105
Msa1003110 AT3G16690.2 34.722 144 91 2 1 142 10 152 4.48e-26 101

Find 59 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCGTTCTTGGTGTTCT+TGG 0.169280 7_1:+168304 Msa1003110:CDS
CACACATCCAAATGAGTTTA+TGG 0.188728 7_1:-168556 None:intergenic
CCACTTCGTGTCCAAGTTCT+TGG 0.244317 7_1:+168832 Msa1003110:CDS
TCGATTTCTTCTTGTATATA+CGG 0.244759 7_1:-168434 None:intergenic
CTCATTACCATAAACTCATT+TGG 0.319248 7_1:+168549 Msa1003110:CDS
AGGTAACGTCATTTCGTTCT+TGG 0.323739 7_1:+168295 Msa1003110:intron
CTTAACTTTCAAGTTACTTT+CGG 0.328483 7_1:+168750 Msa1003110:CDS
AATGTGTTGGGTTTCGTATT+GGG 0.328786 7_1:+169387 Msa1003110:CDS
CTTTGTTCAGCTCCATGCTT+TGG 0.359151 7_1:+168490 Msa1003110:CDS
AATACGAAACCCAACACATT+TGG 0.368529 7_1:-169384 None:intergenic
AAATGTGTTGGGTTTCGTAT+TGG 0.380441 7_1:+169386 Msa1003110:CDS
CACAAACCCATCCAAGAACT+TGG 0.408159 7_1:-168843 None:intergenic
ATTTAAACTCCAGAGCCAAT+AGG 0.432197 7_1:-169591 None:intergenic
TTCGTGTCCAAGTTCTTGGA+TGG 0.434485 7_1:+168836 Msa1003110:CDS
ATACGAAACCCAACACATTT+GGG 0.439248 7_1:-169383 None:intergenic
TGCTGCTGTATGCAATCTAT+AGG 0.452278 7_1:+169421 Msa1003110:CDS
AATAATACCCTTGCATCTCT+TGG 0.455895 7_1:-168618 None:intergenic
GTTCAAAGTGAGGAACCTAT+TGG 0.474459 7_1:+169576 Msa1003110:CDS
TATTGTTATAGAGACCCAAT+TGG 0.489238 7_1:+169503 Msa1003110:CDS
AGTGAGGAACCTATTGGCTC+TGG 0.490260 7_1:+169582 Msa1003110:CDS
GTACATACCACAATGCTTAG+TGG 0.491986 7_1:-168895 None:intergenic
GCCACAATGTGGTTTGGCTA+CGG 0.514248 7_1:+169083 Msa1003110:CDS
TTGAGTGCCACAATGTGGTT+TGG 0.514750 7_1:+169077 Msa1003110:CDS
TCGTGTCCAAGTTCTTGGAT+GGG 0.519498 7_1:+168837 Msa1003110:CDS
CTGAACAAAGCTACTAGGTA+AGG 0.520832 7_1:-168477 None:intergenic
TGGAGCTGAACAAAGCTACT+AGG 0.521833 7_1:-168482 None:intergenic
CTGCAAAGACACTAACACTA+AGG 0.526938 7_1:-168870 None:intergenic
GTGCAGCTCCCAAATGTGTT+GGG 0.530668 7_1:+169375 Msa1003110:intron
GAACAAGGGTGATGATAATG+AGG 0.540496 7_1:+169548 Msa1003110:CDS
ATGCAATCTATAGGAATGGT+GGG 0.547366 7_1:+169430 Msa1003110:CDS
CAAATGAGTTTATGGTAATG+AGG 0.551806 7_1:-168548 None:intergenic
CATAAACTCATTTGGATGTG+TGG 0.553344 7_1:+168557 Msa1003110:CDS
GTTACTTTCGGCAATGAACG+TGG 0.564481 7_1:+168762 Msa1003110:CDS
TACAAGAAGAAATCGACAGA+GGG 0.564739 7_1:+168441 Msa1003110:CDS
GACACGAAGTGGACCATGCA+CGG 0.579340 7_1:-168821 None:intergenic
TGGCTACGGTCTCTTCCTCA+AGG 0.581206 7_1:+169097 Msa1003110:CDS
TGTGCAGCTCCCAAATGTGT+TGG 0.581637 7_1:+169374 Msa1003110:intron
GATGTACAATATGATGTAGA+TGG 0.583280 7_1:-168586 None:intergenic
GTCACTAACTATGCCGTGCA+TGG 0.586420 7_1:+168808 Msa1003110:CDS
CCAAGAACTTGGACACGAAG+TGG 0.588617 7_1:-168832 None:intergenic
CGGCATAGTTAGTGACTATG+AGG 0.591246 7_1:-168801 None:intergenic
GACTATGAGGATCAAAGCAA+AGG 0.596059 7_1:-168788 None:intergenic
CTGTATGCAATCTATAGGAA+TGG 0.607405 7_1:+169426 Msa1003110:CDS
CTATGCACCAAGAGATGCAA+GGG 0.607841 7_1:+168611 Msa1003110:CDS
TGCATAGTACAACCAAAGCA+TGG 0.611574 7_1:-168502 None:intergenic
TATGCAATCTATAGGAATGG+TGG 0.615800 7_1:+169429 Msa1003110:CDS
CAGCAATGCATATGTCCTTG+AGG 0.616655 7_1:-169112 None:intergenic
AGAGTGAATGACAAATTGAA+AGG 0.622293 7_1:-169050 None:intergenic
TACTTTCGGCAATGAACGTG+GGG 0.627256 7_1:+168764 Msa1003110:CDS
TTACTTTCGGCAATGAACGT+GGG 0.632501 7_1:+168763 Msa1003110:CDS
TGCAAAGACACTAACACTAA+GGG 0.634955 7_1:-168869 None:intergenic
TGCAATCTATAGGAATGGTG+GGG 0.637303 7_1:+169431 Msa1003110:CDS
TGCAGCACCACTAAGCATTG+TGG 0.637500 7_1:+168888 Msa1003110:CDS
TGAACAAGAAAAGAAGAACA+AGG 0.638374 7_1:+169533 Msa1003110:CDS
GAACAAGAAAAGAAGAACAA+GGG 0.658330 7_1:+169534 Msa1003110:CDS
TCTATGCACCAAGAGATGCA+AGG 0.675820 7_1:+168610 Msa1003110:CDS
TCACATTGAGTGCCACAATG+TGG 0.691357 7_1:+169072 Msa1003110:CDS
ATACAAGAAGAAATCGACAG+AGG 0.715649 7_1:+168440 Msa1003110:CDS
ACCGTAGCCAAACCACATTG+TGG 0.726020 7_1:-169084 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAATTGCAAATATA+TGG - chr7_1:168018-168037 None:intergenic 10.0%
!! ATTTAAATAAATACTTACAT+TGG - chr7_1:168332-168351 None:intergenic 10.0%
!! CATTCAATAATAAATATTTA+AGG - chr7_1:168725-168744 None:intergenic 10.0%
!! TTATATATATTAATTGAGTA+AGG - chr7_1:168932-168951 None:intergenic 10.0%
!! AAAAGAAAAAATAAAATTAG+TGG + chr7_1:169156-169175 Msa1003110:intron 10.0%
!! ATAATTAAATTGCAAATATA+TGG - chr7_1:168018-168037 None:intergenic 10.0%
!! ATTTAAATAAATACTTACAT+TGG - chr7_1:168332-168351 None:intergenic 10.0%
!! CATTCAATAATAAATATTTA+AGG - chr7_1:168725-168744 None:intergenic 10.0%
!! TTATATATATTAATTGAGTA+AGG - chr7_1:168932-168951 None:intergenic 10.0%
!! AAAAGAAAAAATAAAATTAG+TGG + chr7_1:169156-169175 Msa1003110:intron 10.0%
!!! AATATATTTTCAATGCATTT+AGG + chr7_1:167953-167972 Msa1003110:intron 15.0%
!! TAGTAAGAAAAAAACAAAAA+GGG - chr7_1:168107-168126 None:intergenic 15.0%
!! TTAGTAAGAAAAAAACAAAA+AGG - chr7_1:168108-168127 None:intergenic 15.0%
!! AGATATTAATGTTCAATTAT+TGG - chr7_1:168673-168692 None:intergenic 15.0%
!!! TTTTCTTGAAATTTATATGT+AGG + chr7_1:168992-169011 Msa1003110:intron 15.0%
!! GATTTCATCAAAAAATAATT+AGG - chr7_1:169281-169300 None:intergenic 15.0%
!!! AATATATTTTCAATGCATTT+AGG + chr7_1:167953-167972 Msa1003110:intron 15.0%
!! TAGTAAGAAAAAAACAAAAA+GGG - chr7_1:168107-168126 None:intergenic 15.0%
!! TTAGTAAGAAAAAAACAAAA+AGG - chr7_1:168108-168127 None:intergenic 15.0%
!! AGATATTAATGTTCAATTAT+TGG - chr7_1:168673-168692 None:intergenic 15.0%
!!! TTTTCTTGAAATTTATATGT+AGG + chr7_1:168992-169011 Msa1003110:intron 15.0%
!! GATTTCATCAAAAAATAATT+AGG - chr7_1:169281-169300 None:intergenic 15.0%
!!! GTATTTTACTTTTTTGTTGT+AGG + chr7_1:167873-167892 Msa1003110:intron 20.0%
!! ATATAATGTGTGTGTATAAA+CGG - chr7_1:168184-168203 None:intergenic 20.0%
!! TTAATGTTCAATTATTGGAT+TGG - chr7_1:168668-168687 None:intergenic 20.0%
!!! AGTTTGATTTATGAACTTAA+TGG + chr7_1:168960-168979 Msa1003110:intron 20.0%
!! AAAACAATCAAATTATGACA+AGG - chr7_1:169205-169224 None:intergenic 20.0%
!!! TTGTTCAATTTTTTCCAATT+GGG - chr7_1:169520-169539 None:intergenic 20.0%
!!! GTATTTTACTTTTTTGTTGT+AGG + chr7_1:167873-167892 Msa1003110:intron 20.0%
!! ATATAATGTGTGTGTATAAA+CGG - chr7_1:168184-168203 None:intergenic 20.0%
!! TTAATGTTCAATTATTGGAT+TGG - chr7_1:168668-168687 None:intergenic 20.0%
!!! AGTTTGATTTATGAACTTAA+TGG + chr7_1:168960-168979 Msa1003110:intron 20.0%
!! AAAACAATCAAATTATGACA+AGG - chr7_1:169205-169224 None:intergenic 20.0%
!!! TTGTTCAATTTTTTCCAATT+GGG - chr7_1:169520-169539 None:intergenic 20.0%
! TTGCAAATATATGGAAAATG+TGG - chr7_1:168009-168028 None:intergenic 25.0%
! AAAAAAACAAAAAGGGAATG+TGG - chr7_1:168100-168119 None:intergenic 25.0%
! ACAAAATACATGTATACAAG+AGG - chr7_1:168234-168253 None:intergenic 25.0%
! TTACCTGTACATCAAATATA+GGG - chr7_1:168281-168300 None:intergenic 25.0%
! TCGATTTCTTCTTGTATATA+CGG - chr7_1:168437-168456 None:intergenic 25.0%
!!! CTTAACTTTCAAGTTACTTT+CGG + chr7_1:168750-168769 Msa1003110:CDS 25.0%
!! TCTATAACAATACTTTTGAG+TGG - chr7_1:169495-169514 None:intergenic 25.0%
!!! CTTGTTCAATTTTTTCCAAT+TGG - chr7_1:169521-169540 None:intergenic 25.0%
! TTGCAAATATATGGAAAATG+TGG - chr7_1:168009-168028 None:intergenic 25.0%
! AAAAAAACAAAAAGGGAATG+TGG - chr7_1:168100-168119 None:intergenic 25.0%
! ACAAAATACATGTATACAAG+AGG - chr7_1:168234-168253 None:intergenic 25.0%
! TTACCTGTACATCAAATATA+GGG - chr7_1:168281-168300 None:intergenic 25.0%
! TCGATTTCTTCTTGTATATA+CGG - chr7_1:168437-168456 None:intergenic 25.0%
!!! CTTAACTTTCAAGTTACTTT+CGG + chr7_1:168750-168769 Msa1003110:CDS 25.0%
!! TCTATAACAATACTTTTGAG+TGG - chr7_1:169495-169514 None:intergenic 25.0%
!!! CTTGTTCAATTTTTTCCAAT+TGG - chr7_1:169521-169540 None:intergenic 25.0%
GCAAATAGATATACAAGTAC+TGG + chr7_1:167895-167914 Msa1003110:intron 30.0%
TGTGTGTATAAACGGTTAAT+TGG - chr7_1:168176-168195 None:intergenic 30.0%
! ATGTATTTTGTGATCAGCAA+AGG + chr7_1:168243-168262 Msa1003110:intron 30.0%
GTTACCTGTACATCAAATAT+AGG - chr7_1:168282-168301 None:intergenic 30.0%
! CAAATGAGTTTATGGTAATG+AGG - chr7_1:168551-168570 None:intergenic 30.0%
CTCATTACCATAAACTCATT+TGG + chr7_1:168549-168568 Msa1003110:CDS 30.0%
GATGTACAATATGATGTAGA+TGG - chr7_1:168589-168608 None:intergenic 30.0%
AGAGTGAATGACAAATTGAA+AGG - chr7_1:169053-169072 None:intergenic 30.0%
TATTGTTATAGAGACCCAAT+TGG + chr7_1:169503-169522 Msa1003110:CDS 30.0%
TGAACAAGAAAAGAAGAACA+AGG + chr7_1:169533-169552 Msa1003110:CDS 30.0%
GAACAAGAAAAGAAGAACAA+GGG + chr7_1:169534-169553 Msa1003110:CDS 30.0%
GCAAATAGATATACAAGTAC+TGG + chr7_1:167895-167914 Msa1003110:intron 30.0%
TGTGTGTATAAACGGTTAAT+TGG - chr7_1:168176-168195 None:intergenic 30.0%
! ATGTATTTTGTGATCAGCAA+AGG + chr7_1:168243-168262 Msa1003110:intron 30.0%
GTTACCTGTACATCAAATAT+AGG - chr7_1:168282-168301 None:intergenic 30.0%
! CAAATGAGTTTATGGTAATG+AGG - chr7_1:168551-168570 None:intergenic 30.0%
CTCATTACCATAAACTCATT+TGG + chr7_1:168549-168568 Msa1003110:CDS 30.0%
GATGTACAATATGATGTAGA+TGG - chr7_1:168589-168608 None:intergenic 30.0%
AGAGTGAATGACAAATTGAA+AGG - chr7_1:169053-169072 None:intergenic 30.0%
TATTGTTATAGAGACCCAAT+TGG + chr7_1:169503-169522 Msa1003110:CDS 30.0%
TGAACAAGAAAAGAAGAACA+AGG + chr7_1:169533-169552 Msa1003110:CDS 30.0%
GAACAAGAAAAGAAGAACAA+GGG + chr7_1:169534-169553 Msa1003110:CDS 30.0%
GTAAGCTGCTAAAATGAAGT+GGG - chr7_1:167984-168003 None:intergenic 35.0%
AGTAAGCTGCTAAAATGAAG+TGG - chr7_1:167985-168004 None:intergenic 35.0%
GCAAAAAGTTGAATACCAAG+AGG + chr7_1:168053-168072 Msa1003110:intron 35.0%
TTATCAACTCAACATCCTCT+TGG - chr7_1:168071-168090 None:intergenic 35.0%
ATACAAGAAGAAATCGACAG+AGG + chr7_1:168440-168459 Msa1003110:CDS 35.0%
TACAAGAAGAAATCGACAGA+GGG + chr7_1:168441-168460 Msa1003110:CDS 35.0%
CACACATCCAAATGAGTTTA+TGG - chr7_1:168559-168578 None:intergenic 35.0%
CATAAACTCATTTGGATGTG+TGG + chr7_1:168557-168576 Msa1003110:CDS 35.0%
AATAATACCCTTGCATCTCT+TGG - chr7_1:168621-168640 None:intergenic 35.0%
TGCAAAGACACTAACACTAA+GGG - chr7_1:168872-168891 None:intergenic 35.0%
ATACGAAACCCAACACATTT+GGG - chr7_1:169386-169405 None:intergenic 35.0%
AATACGAAACCCAACACATT+TGG - chr7_1:169387-169406 None:intergenic 35.0%
AAATGTGTTGGGTTTCGTAT+TGG + chr7_1:169386-169405 Msa1003110:CDS 35.0%
AATGTGTTGGGTTTCGTATT+GGG + chr7_1:169387-169406 Msa1003110:CDS 35.0%
CTGTATGCAATCTATAGGAA+TGG + chr7_1:169426-169445 Msa1003110:CDS 35.0%
TATGCAATCTATAGGAATGG+TGG + chr7_1:169429-169448 Msa1003110:CDS 35.0%
ATGCAATCTATAGGAATGGT+GGG + chr7_1:169430-169449 Msa1003110:CDS 35.0%
TGGGGAAAAAGCTATGAAAA+AGG + chr7_1:169449-169468 Msa1003110:CDS 35.0%
!! ATACTTTTGAGTGGCTCAAT+TGG - chr7_1:169486-169505 None:intergenic 35.0%
TGAGGAAAAAGTTCAAAGTG+AGG + chr7_1:169566-169585 Msa1003110:CDS 35.0%
GTAAGCTGCTAAAATGAAGT+GGG - chr7_1:167984-168003 None:intergenic 35.0%
AGTAAGCTGCTAAAATGAAG+TGG - chr7_1:167985-168004 None:intergenic 35.0%
GCAAAAAGTTGAATACCAAG+AGG + chr7_1:168053-168072 Msa1003110:intron 35.0%
TTATCAACTCAACATCCTCT+TGG - chr7_1:168071-168090 None:intergenic 35.0%
ATACAAGAAGAAATCGACAG+AGG + chr7_1:168440-168459 Msa1003110:CDS 35.0%
TACAAGAAGAAATCGACAGA+GGG + chr7_1:168441-168460 Msa1003110:CDS 35.0%
CACACATCCAAATGAGTTTA+TGG - chr7_1:168559-168578 None:intergenic 35.0%
CATAAACTCATTTGGATGTG+TGG + chr7_1:168557-168576 Msa1003110:CDS 35.0%
AATAATACCCTTGCATCTCT+TGG - chr7_1:168621-168640 None:intergenic 35.0%
TGCAAAGACACTAACACTAA+GGG - chr7_1:168872-168891 None:intergenic 35.0%
ATACGAAACCCAACACATTT+GGG - chr7_1:169386-169405 None:intergenic 35.0%
AATACGAAACCCAACACATT+TGG - chr7_1:169387-169406 None:intergenic 35.0%
AAATGTGTTGGGTTTCGTAT+TGG + chr7_1:169386-169405 Msa1003110:CDS 35.0%
AATGTGTTGGGTTTCGTATT+GGG + chr7_1:169387-169406 Msa1003110:CDS 35.0%
CTGTATGCAATCTATAGGAA+TGG + chr7_1:169426-169445 Msa1003110:CDS 35.0%
TATGCAATCTATAGGAATGG+TGG + chr7_1:169429-169448 Msa1003110:CDS 35.0%
ATGCAATCTATAGGAATGGT+GGG + chr7_1:169430-169449 Msa1003110:CDS 35.0%
TGGGGAAAAAGCTATGAAAA+AGG + chr7_1:169449-169468 Msa1003110:CDS 35.0%
!! ATACTTTTGAGTGGCTCAAT+TGG - chr7_1:169486-169505 None:intergenic 35.0%
TGAGGAAAAAGTTCAAAGTG+AGG + chr7_1:169566-169585 Msa1003110:CDS 35.0%
CTGCCCTATATTTGATGTAC+AGG + chr7_1:168275-168294 Msa1003110:intron 40.0%
AGGTAACGTCATTTCGTTCT+TGG + chr7_1:168295-168314 Msa1003110:intron 40.0%
!! CATTTCGTTCTTGGTGTTCT+TGG + chr7_1:168304-168323 Msa1003110:CDS 40.0%
CTGAACAAAGCTACTAGGTA+AGG - chr7_1:168480-168499 None:intergenic 40.0%
TGCATAGTACAACCAAAGCA+TGG - chr7_1:168505-168524 None:intergenic 40.0%
TTACTTTCGGCAATGAACGT+GGG + chr7_1:168763-168782 Msa1003110:CDS 40.0%
GACTATGAGGATCAAAGCAA+AGG - chr7_1:168791-168810 None:intergenic 40.0%
CTGCAAAGACACTAACACTA+AGG - chr7_1:168873-168892 None:intergenic 40.0%
GTACATACCACAATGCTTAG+TGG - chr7_1:168898-168917 None:intergenic 40.0%
TGCTGCTGTATGCAATCTAT+AGG + chr7_1:169421-169440 Msa1003110:CDS 40.0%
TGCAATCTATAGGAATGGTG+GGG + chr7_1:169431-169450 Msa1003110:CDS 40.0%
! GAACAAGGGTGATGATAATG+AGG + chr7_1:169548-169567 Msa1003110:CDS 40.0%
GTTCAAAGTGAGGAACCTAT+TGG + chr7_1:169576-169595 Msa1003110:CDS 40.0%
CTGCCCTATATTTGATGTAC+AGG + chr7_1:168275-168294 Msa1003110:intron 40.0%
AGGTAACGTCATTTCGTTCT+TGG + chr7_1:168295-168314 Msa1003110:intron 40.0%
!! CATTTCGTTCTTGGTGTTCT+TGG + chr7_1:168304-168323 Msa1003110:CDS 40.0%
CTGAACAAAGCTACTAGGTA+AGG - chr7_1:168480-168499 None:intergenic 40.0%
TGCATAGTACAACCAAAGCA+TGG - chr7_1:168505-168524 None:intergenic 40.0%
TTACTTTCGGCAATGAACGT+GGG + chr7_1:168763-168782 Msa1003110:CDS 40.0%
GACTATGAGGATCAAAGCAA+AGG - chr7_1:168791-168810 None:intergenic 40.0%
CTGCAAAGACACTAACACTA+AGG - chr7_1:168873-168892 None:intergenic 40.0%
GTACATACCACAATGCTTAG+TGG - chr7_1:168898-168917 None:intergenic 40.0%
TGCTGCTGTATGCAATCTAT+AGG + chr7_1:169421-169440 Msa1003110:CDS 40.0%
TGCAATCTATAGGAATGGTG+GGG + chr7_1:169431-169450 Msa1003110:CDS 40.0%
! GAACAAGGGTGATGATAATG+AGG + chr7_1:169548-169567 Msa1003110:CDS 40.0%
GTTCAAAGTGAGGAACCTAT+TGG + chr7_1:169576-169595 Msa1003110:CDS 40.0%
TGGAGCTGAACAAAGCTACT+AGG - chr7_1:168485-168504 None:intergenic 45.0%
CTTTGTTCAGCTCCATGCTT+TGG + chr7_1:168490-168509 Msa1003110:CDS 45.0%
TCTATGCACCAAGAGATGCA+AGG + chr7_1:168610-168629 Msa1003110:CDS 45.0%
CTATGCACCAAGAGATGCAA+GGG + chr7_1:168611-168630 Msa1003110:CDS 45.0%
! GTTACTTTCGGCAATGAACG+TGG + chr7_1:168762-168781 Msa1003110:CDS 45.0%
TACTTTCGGCAATGAACGTG+GGG + chr7_1:168764-168783 Msa1003110:CDS 45.0%
CGGCATAGTTAGTGACTATG+AGG - chr7_1:168804-168823 None:intergenic 45.0%
TTCGTGTCCAAGTTCTTGGA+TGG + chr7_1:168836-168855 Msa1003110:CDS 45.0%
TCGTGTCCAAGTTCTTGGAT+GGG + chr7_1:168837-168856 Msa1003110:CDS 45.0%
CACAAACCCATCCAAGAACT+TGG - chr7_1:168846-168865 None:intergenic 45.0%
TCACATTGAGTGCCACAATG+TGG + chr7_1:169072-169091 Msa1003110:CDS 45.0%
TTGAGTGCCACAATGTGGTT+TGG + chr7_1:169077-169096 Msa1003110:CDS 45.0%
CAGCAATGCATATGTCCTTG+AGG - chr7_1:169115-169134 None:intergenic 45.0%
TGGAGCTGAACAAAGCTACT+AGG - chr7_1:168485-168504 None:intergenic 45.0%
CTTTGTTCAGCTCCATGCTT+TGG + chr7_1:168490-168509 Msa1003110:CDS 45.0%
TCTATGCACCAAGAGATGCA+AGG + chr7_1:168610-168629 Msa1003110:CDS 45.0%
CTATGCACCAAGAGATGCAA+GGG + chr7_1:168611-168630 Msa1003110:CDS 45.0%
! GTTACTTTCGGCAATGAACG+TGG + chr7_1:168762-168781 Msa1003110:CDS 45.0%
TACTTTCGGCAATGAACGTG+GGG + chr7_1:168764-168783 Msa1003110:CDS 45.0%
CGGCATAGTTAGTGACTATG+AGG - chr7_1:168804-168823 None:intergenic 45.0%
TTCGTGTCCAAGTTCTTGGA+TGG + chr7_1:168836-168855 Msa1003110:CDS 45.0%
TCGTGTCCAAGTTCTTGGAT+GGG + chr7_1:168837-168856 Msa1003110:CDS 45.0%
CACAAACCCATCCAAGAACT+TGG - chr7_1:168846-168865 None:intergenic 45.0%
TCACATTGAGTGCCACAATG+TGG + chr7_1:169072-169091 Msa1003110:CDS 45.0%
TTGAGTGCCACAATGTGGTT+TGG + chr7_1:169077-169096 Msa1003110:CDS 45.0%
CAGCAATGCATATGTCCTTG+AGG - chr7_1:169115-169134 None:intergenic 45.0%
GTCACTAACTATGCCGTGCA+TGG + chr7_1:168808-168827 Msa1003110:CDS 50.0%
CCAAGAACTTGGACACGAAG+TGG - chr7_1:168835-168854 None:intergenic 50.0%
CCACTTCGTGTCCAAGTTCT+TGG + chr7_1:168832-168851 Msa1003110:CDS 50.0%
! TGCAGCACCACTAAGCATTG+TGG + chr7_1:168888-168907 Msa1003110:CDS 50.0%
! GCCACAATGTGGTTTGGCTA+CGG + chr7_1:169083-169102 Msa1003110:CDS 50.0%
ACCGTAGCCAAACCACATTG+TGG - chr7_1:169087-169106 None:intergenic 50.0%
TGTGCAGCTCCCAAATGTGT+TGG + chr7_1:169374-169393 Msa1003110:intron 50.0%
GTGCAGCTCCCAAATGTGTT+GGG + chr7_1:169375-169394 Msa1003110:intron 50.0%
!! AGTGAGGAACCTATTGGCTC+TGG + chr7_1:169582-169601 Msa1003110:CDS 50.0%
GTCACTAACTATGCCGTGCA+TGG + chr7_1:168808-168827 Msa1003110:CDS 50.0%
CCAAGAACTTGGACACGAAG+TGG - chr7_1:168835-168854 None:intergenic 50.0%
CCACTTCGTGTCCAAGTTCT+TGG + chr7_1:168832-168851 Msa1003110:CDS 50.0%
! TGCAGCACCACTAAGCATTG+TGG + chr7_1:168888-168907 Msa1003110:CDS 50.0%
! GCCACAATGTGGTTTGGCTA+CGG + chr7_1:169083-169102 Msa1003110:CDS 50.0%
ACCGTAGCCAAACCACATTG+TGG - chr7_1:169087-169106 None:intergenic 50.0%
TGTGCAGCTCCCAAATGTGT+TGG + chr7_1:169374-169393 Msa1003110:intron 50.0%
GTGCAGCTCCCAAATGTGTT+GGG + chr7_1:169375-169394 Msa1003110:intron 50.0%
!! AGTGAGGAACCTATTGGCTC+TGG + chr7_1:169582-169601 Msa1003110:CDS 50.0%
GACACGAAGTGGACCATGCA+CGG - chr7_1:168824-168843 None:intergenic 55.0%
TGGCTACGGTCTCTTCCTCA+AGG + chr7_1:169097-169116 Msa1003110:CDS 55.0%
GACACGAAGTGGACCATGCA+CGG - chr7_1:168824-168843 None:intergenic 55.0%
TGGCTACGGTCTCTTCCTCA+AGG + chr7_1:169097-169116 Msa1003110:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 167826 169611 167826 ID=Msa1003110;Name=Msa1003110
chr7_1 mRNA 167826 169611 167826 ID=Msa1003110-mRNA-1;Parent=Msa1003110;Name=Msa1003110-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|0.83|1|0.83|6|0|255
chr7_1 exon 167826 167832 167826 ID=Msa1003110-mRNA-1:exon:17;Parent=Msa1003110-mRNA-1
chr7_1 exon 168297 168333 168297 ID=Msa1003110-mRNA-1:exon:18;Parent=Msa1003110-mRNA-1
chr7_1 exon 168422 168632 168422 ID=Msa1003110-mRNA-1:exon:19;Parent=Msa1003110-mRNA-1
chr7_1 exon 168748 168909 168748 ID=Msa1003110-mRNA-1:exon:20;Parent=Msa1003110-mRNA-1
chr7_1 exon 169014 169133 169014 ID=Msa1003110-mRNA-1:exon:21;Parent=Msa1003110-mRNA-1
chr7_1 exon 169381 169611 169381 ID=Msa1003110-mRNA-1:exon:22;Parent=Msa1003110-mRNA-1
chr7_1 CDS 167826 167832 167826 ID=Msa1003110-mRNA-1:cds;Parent=Msa1003110-mRNA-1
chr7_1 CDS 168297 168333 168297 ID=Msa1003110-mRNA-1:cds;Parent=Msa1003110-mRNA-1
chr7_1 CDS 168422 168632 168422 ID=Msa1003110-mRNA-1:cds;Parent=Msa1003110-mRNA-1
chr7_1 CDS 168748 168909 168748 ID=Msa1003110-mRNA-1:cds;Parent=Msa1003110-mRNA-1
chr7_1 CDS 169014 169133 169014 ID=Msa1003110-mRNA-1:cds;Parent=Msa1003110-mRNA-1
chr7_1 CDS 169381 169611 169381 ID=Msa1003110-mRNA-1:cds;Parent=Msa1003110-mRNA-1
Gene Sequence

>Msa1003110

ATGCTTGGTAACGTCATTTCGTTCTTGGTGTTCTTGGCTCCAATATCAACATTTTACCGTATATACAAGAAGAAATCGACAGAGGGTTTTCAGTCACTGCCTTACCTAGTAGCTTTGTTCAGCTCCATGCTTTGGTTGTACTATGCATTGCTAAAAAAAGATGCTTTTCTCCTCATTACCATAAACTCATTTGGATGTGTGGTAGAGACCATCTACATCATATTGTACATCATCTATGCACCAAGAGATGCAAGGAACTTAACTTTCAAGTTACTTTCGGCAATGAACGTGGGGTCCTTTGCTTTGATCCTCATAGTCACTAACTATGCCGTGCATGGTCCACTTCGTGTCCAAGTTCTTGGATGGGTTTGTGTTTCCCTTAGTGTTAGTGTCTTTGCAGCACCACTAAGCATTGTGGCGCAAGTTGTTCGTACAAAGAGTGTTGAGTTTATGCCTTTCAATTTGTCATTCACTCTCACATTGAGTGCCACAATGTGGTTTGGCTACGGTCTCTTCCTCAAGGACATATGCATTGCTCTCCCAAATGTGTTGGGTTTCGTATTGGGATTACTTCAGATGCTGCTGTATGCAATCTATAGGAATGGTGGGGAAAAAGCTATGAAAAAGGAAAAGAAAGCACCAATTGAGCCACTCAAAAGTATTGTTATAGAGACCCAATTGGAAAAAATTGAACAAGAAAAGAAGAACAAGGGTGATGATAATGAGGAAAAAGTTCAAAGTGAGGAACCTATTGGCTCTGGAGTTTAA

Protein sequence

>Msa1003110

MLGNVISFLVFLAPISTFYRIYKKKSTEGFQSLPYLVALFSSMLWLYYALLKKDAFLLITINSFGCVVETIYIILYIIYAPRDARNLTFKLLSAMNVGSFALILIVTNYAVHGPLRVQVLGWVCVSLSVSVFAAPLSIVAQVVRTKSVEFMPFNLSFTLTLSATMWFGYGLFLKDICIALPNVLGFVLGLLQMLLYAIYRNGGEKAMKKEKKAPIEPLKSIVIETQLEKIEQEKKNKGDDNEEKVQSEEPIGSGV*