Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129350 | XP_013469319.1 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129350 | sp|Q8GYE0|PHF1_ARATH | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 2.39e-179 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129350 | A0A072VNK4 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035300 | Msa0129350 | 0.958464 | 2.207430e-116 | -8.615850e-47 |
| Msa0129350 | Msa0176030 | 0.941454 | 4.042949e-101 | -8.615850e-47 |
| Msa0129350 | Msa0746970 | 0.995992 | 3.643271e-222 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129350 | MtrunA17_Chr1g0197641 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Msa0129350 | MtrunA17_Chr4g0043971 | 32.424 | 330 | 205 | 8 | 30 | 348 | 72 | 394 | 1.44e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129350 | AT3G52190.1 | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 2.43e-180 | 507 |
| Msa0129350 | AT5G50650.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.83e-42 | 153 |
| Msa0129350 | AT5G50550.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.83e-42 | 153 |
| Msa0129350 | AT2G01470.1 | 33.673 | 294 | 181 | 9 | 41 | 327 | 76 | 362 | 3.75e-39 | 144 |
Find 133 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAAATTTCTGAGAATT+TGG | 0.127504 | 1_3:+59253690 | Msa0129350:five_prime_UTR |
| GCCTAGCATGCGCATAATTT+TGG | 0.182728 | 1_3:+59255841 | Msa0129350:CDS |
| ATGAGTTCATGGAACAAAAT+AGG | 0.220715 | 1_3:+59256603 | Msa0129350:CDS |
| GGAACCAAACCATTTCTATT+TGG | 0.223219 | 1_3:+59256422 | Msa0129350:CDS |
| CGGACAGATTTGTGTGCTTT+TGG | 0.240942 | 1_3:-59255869 | None:intergenic |
| TCGAGAACTCTGATTCGTTC+TGG | 0.241586 | 1_3:+59258554 | Msa0129350:CDS |
| AATCTCAACCTAGTTGTTCT+TGG | 0.269966 | 1_3:+59253779 | Msa0129350:CDS |
| CTCAGCTTCTAACACAAAAT+TGG | 0.284131 | 1_3:-59254754 | None:intergenic |
| ATATCACAATAATGGCCTTT+TGG | 0.288267 | 1_3:-59258846 | None:intergenic |
| AGATAACCTTTCCAATCTTT+AGG | 0.319043 | 1_3:-59257921 | None:intergenic |
| ACACAAATCTGTCCGGGATA+TGG | 0.322553 | 1_3:+59255877 | Msa0129350:CDS |
| GATTTACGACTTAAGACATT+TGG | 0.331779 | 1_3:+59258955 | Msa0129350:three_prime_UTR |
| CGAGAACTCTGATTCGTTCT+GGG | 0.331945 | 1_3:+59258555 | Msa0129350:CDS |
| GTAGACAAAGAAACGGTTAT+AGG | 0.338185 | 1_3:-59253857 | None:intergenic |
| CTGATGGTTCAGCGAGAATC+TGG | 0.344529 | 1_3:+59256197 | Msa0129350:CDS |
| GGATGGACACCTCAGAATTA+TGG | 0.345586 | 1_3:+59255814 | Msa0129350:intron |
| AAATGGTTTGGTTCCATCCT+TGG | 0.346387 | 1_3:-59256414 | None:intergenic |
| CTGTAGAGGGGTTAGTTCCT+TGG | 0.349847 | 1_3:-59255610 | None:intergenic |
| CTCATCATTGGTTTAAACCT+TGG | 0.350046 | 1_3:-59258610 | None:intergenic |
| CTCAGGGTCCGGTTACTTGC+GGG | 0.357610 | 1_3:+59253735 | Msa0129350:CDS |
| CTATTTGGCGCCGTTCAAAA+AGG | 0.360925 | 1_3:+59256437 | Msa0129350:CDS |
| TTCTTTGTCTACTTCCCCTT+TGG | 0.362793 | 1_3:+59253868 | Msa0129350:CDS |
| CTGTTTACACATGTAGAATT+AGG | 0.365054 | 1_3:+59258758 | Msa0129350:three_prime_UTR |
| CACTAAAAGTAATACATGTC+TGG | 0.366135 | 1_3:-59255644 | None:intergenic |
| ATTTACGACTTAAGACATTT+GGG | 0.366926 | 1_3:+59258956 | Msa0129350:three_prime_UTR |
| GACCCTCTCTCTTTCCTCTT+CGG | 0.369254 | 1_3:+59253555 | Msa0129350:five_prime_UTR |
| TCAATTACATATCACAATAA+TGG | 0.376203 | 1_3:-59258854 | None:intergenic |
| GATTGAGGGTCTCTCATCAT+TGG | 0.378056 | 1_3:-59258622 | None:intergenic |
| ATCCATGACCCGCAAGTAAC+CGG | 0.389128 | 1_3:-59253743 | None:intergenic |
| TGCAGATTGTTTGAGCTCTA+TGG | 0.390492 | 1_3:+59255561 | Msa0129350:intron |
| CTCAATCATTTGATGATCAA+TGG | 0.390908 | 1_3:+59258638 | Msa0129350:CDS |
| AATGAGCGCAAGTTGTTTGT+TGG | 0.392138 | 1_3:-59253532 | None:intergenic |
| TAAGTCTCTTACAGCGGTTT+GGG | 0.395510 | 1_3:+59256578 | Msa0129350:CDS |
| TTACTTGCGGGTCATGGATT+CGG | 0.400800 | 1_3:+59253747 | Msa0129350:CDS |
| ATAAGTCTCTTACAGCGGTT+TGG | 0.404946 | 1_3:+59256577 | Msa0129350:CDS |
| TGAGTTCATGGAACAAAATA+GGG | 0.405250 | 1_3:+59256604 | Msa0129350:CDS |
| TCAATCATTTGATGATCAAT+GGG | 0.405468 | 1_3:+59258639 | Msa0129350:CDS |
| AACTGAATGTACCTAAAGAT+TGG | 0.410490 | 1_3:+59257910 | Msa0129350:CDS |
| GGTTTAAACCTTGGTCTAGC+TGG | 0.411531 | 1_3:-59258601 | None:intergenic |
| TGAAATATGAATTCAAAGTT+CGG | 0.417229 | 1_3:-59253673 | None:intergenic |
| GGCGCCAAATAGAAATGGTT+TGG | 0.423691 | 1_3:-59256426 | None:intergenic |
| CGGTTTGGGATATGAGTTCA+TGG | 0.428050 | 1_3:+59256592 | Msa0129350:CDS |
| GTCCGGTTACTTGCGGGTCA+TGG | 0.431039 | 1_3:+59253741 | Msa0129350:CDS |
| GGTGTAGTCTCTTGCTATAA+TGG | 0.431141 | 1_3:-59257614 | None:intergenic |
| TGTAGAGGGGTTAGTTCCTT+GGG | 0.433022 | 1_3:-59255609 | None:intergenic |
| TGAACGGCGCCAAATAGAAA+TGG | 0.434674 | 1_3:-59256431 | None:intergenic |
| GCAAGTTGTTTGTTGGATAG+TGG | 0.441867 | 1_3:-59253525 | None:intergenic |
| ACTTACAACCTCAGTAGAAT+GGG | 0.444696 | 1_3:+59257872 | Msa0129350:CDS |
| GAGAAAATCTGAAGCAAAGC+AGG | 0.450891 | 1_3:-59253827 | None:intergenic |
| TGCTGGATCACCTCAGGGTC+CGG | 0.464290 | 1_3:+59253724 | Msa0129350:CDS |
| CAAATTTCTGAGAATTTGGA+TGG | 0.465035 | 1_3:+59253694 | Msa0129350:exon |
| TAGACAAAGAAACGGTTATA+GGG | 0.466115 | 1_3:-59253856 | None:intergenic |
| GAATGATGCTGGATCACCTC+AGG | 0.466193 | 1_3:+59253718 | Msa0129350:CDS |
| TACTTACAACCTCAGTAGAA+TGG | 0.468911 | 1_3:+59257871 | Msa0129350:CDS |
| GGGTGCACAGCAATAGCAAC+CGG | 0.474667 | 1_3:-59254786 | None:intergenic |
| CAAGGAACTAACCCCTCTAC+AGG | 0.483255 | 1_3:+59255611 | Msa0129350:CDS |
| TTCGTTCTGGGGATTTCCAA+TGG | 0.491126 | 1_3:+59258567 | Msa0129350:CDS |
| CTCAGTAGAATGGGGAGCAT+TGG | 0.494832 | 1_3:+59257881 | Msa0129350:CDS |
| CTAACCCCTCTACAGGGTAT+TGG | 0.495022 | 1_3:+59255618 | Msa0129350:CDS |
| ATATAGGTTCTTACAGAGAA+AGG | 0.496610 | 1_3:-59256686 | None:intergenic |
| CAAAAGCACACAAATCTGTC+CGG | 0.496650 | 1_3:+59255870 | Msa0129350:CDS |
| CATTGATCATCAAATGATTG+AGG | 0.497207 | 1_3:-59258637 | None:intergenic |
| GGATCTAAATTTGCTGCTGG+TGG | 0.498037 | 1_3:+59255672 | Msa0129350:CDS |
| CCTCAGGGTCCGGTTACTTG+CGG | 0.499353 | 1_3:+59253734 | Msa0129350:CDS |
| CGGTACAACTATCGCAACAT+TGG | 0.505371 | 1_3:+59257638 | Msa0129350:CDS |
| AGGACAAGAATTTCCACGCT+TGG | 0.506092 | 1_3:-59253807 | None:intergenic |
| TCGTTCTGGGGATTTCCAAT+GGG | 0.509999 | 1_3:+59258568 | Msa0129350:CDS |
| CTAGCTTCAACTTCTACTGA+TGG | 0.515435 | 1_3:+59256181 | Msa0129350:CDS |
| GATGGATCTAAATTTGCTGC+TGG | 0.516767 | 1_3:+59255669 | Msa0129350:CDS |
| ATTGATCATCAAATGATTGA+GGG | 0.517917 | 1_3:-59258636 | None:intergenic |
| TGCAGAGTGGCAGATATACT+TGG | 0.519271 | 1_3:+59258483 | Msa0129350:intron |
| TCCAAAATTATGCGCATGCT+AGG | 0.524567 | 1_3:-59255842 | None:intergenic |
| ACTAAAAGTAATACATGTCT+GGG | 0.525288 | 1_3:-59255643 | None:intergenic |
| AGAAGCTGAGGAAGGTGATC+CGG | 0.530482 | 1_3:+59254767 | Msa0129350:CDS |
| GAGAACTCTGATTCGTTCTG+GGG | 0.533273 | 1_3:+59258556 | Msa0129350:CDS |
| TGGATTTCTGTCCTAGTGAA+AGG | 0.533688 | 1_3:+59257658 | Msa0129350:CDS |
| TCAACCTAGTTGTTCTTGGA+AGG | 0.537175 | 1_3:+59253783 | Msa0129350:CDS |
| TAATGGCCGTTAGCCACGAC+GGG | 0.539256 | 1_3:+59256658 | Msa0129350:CDS |
| AGACGCGGTCACATATCTAC+TGG | 0.544878 | 1_3:-59258664 | None:intergenic |
| ATTTGGATGGAGAATGATGC+TGG | 0.544930 | 1_3:+59253707 | Msa0129350:exon |
| GGCTGTTATGTAATCATGGA+TGG | 0.547222 | 1_3:+59258933 | Msa0129350:three_prime_UTR |
| TGGACCTTCCAAGAACAACT+AGG | 0.547578 | 1_3:-59253787 | None:intergenic |
| TGTACCTAAAATCCATATCC+CGG | 0.552105 | 1_3:-59255889 | None:intergenic |
| GATCTAAATTTGCTGCTGGT+GGG | 0.552966 | 1_3:+59255673 | Msa0129350:CDS |
| GTATTTCCCGTCGTGGCTAA+CGG | 0.556419 | 1_3:-59256664 | None:intergenic |
| TCTATGTGTTGTTGTTCGAT+TGG | 0.557849 | 1_3:+59258684 | Msa0129350:three_prime_UTR |
| TTGAGGCTGTTATGTAATCA+TGG | 0.570101 | 1_3:+59258929 | Msa0129350:three_prime_UTR |
| TAGAAAGTCTGCTTCAGTAA+TGG | 0.572648 | 1_3:+59256641 | Msa0129350:CDS |
| GGAACAAAATAGGGCACAAG+AGG | 0.574914 | 1_3:+59256613 | Msa0129350:CDS |
| AGAAACGGTTATAGGGTCAA+AGG | 0.575993 | 1_3:-59253849 | None:intergenic |
| GTGGTATCAAAATTCAACTC+AGG | 0.578946 | 1_3:+59258728 | Msa0129350:three_prime_UTR |
| AAAAGCACACAAATCTGTCC+GGG | 0.581294 | 1_3:+59255871 | Msa0129350:CDS |
| CACATAAAATCATCACCGCT+AGG | 0.583548 | 1_3:-59254807 | None:intergenic |
| GACCACTCTGTCTCGCAACT+CGG | 0.583764 | 1_3:+59256243 | Msa0129350:CDS |
| TAAATTTGCTGCTGGTGGGT+CGG | 0.586472 | 1_3:+59255677 | Msa0129350:CDS |
| GTGGATATTTACCTTTCACT+AGG | 0.590688 | 1_3:-59257669 | None:intergenic |
| ATCCGAAGAGGAAAGAGAGA+GGG | 0.593233 | 1_3:-59253557 | None:intergenic |
| GTAGTATCAGTAGCTGTAAG+TGG | 0.593314 | 1_3:+59258709 | Msa0129350:three_prime_UTR |
| GGGAACCAATACCCTGTAGA+GGG | 0.595092 | 1_3:-59255623 | None:intergenic |
| AAATTTGCAAGTTGAGCTTG+AGG | 0.604263 | 1_3:+59258912 | Msa0129350:three_prime_UTR |
| AGGGGATAAGTCTCTTACAG+CGG | 0.605985 | 1_3:+59256572 | Msa0129350:intron |
| TTTATGTGCTCTTTGAGCAA+TGG | 0.610268 | 1_3:+59254822 | Msa0129350:CDS |
| TTGCGAGACAGAGTGGTCAC+AGG | 0.610478 | 1_3:-59256238 | None:intergenic |
| AGGGGAAGTAGACAAAGAAA+CGG | 0.613448 | 1_3:-59253864 | None:intergenic |
| AATGTACCTAAAGATTGGAA+AGG | 0.615590 | 1_3:+59257915 | Msa0129350:CDS |
| ACATAAAATCATCACCGCTA+GGG | 0.616388 | 1_3:-59254806 | None:intergenic |
| TATCCGAAGAGGAAAGAGAG+AGG | 0.616703 | 1_3:-59253558 | None:intergenic |
| TTATATAGAAATATCCGAAG+AGG | 0.619452 | 1_3:-59253569 | None:intergenic |
| TGGGAACCAATACCCTGTAG+AGG | 0.620085 | 1_3:-59255624 | None:intergenic |
| TTTGTGTTAGAAGCTGAGGA+AGG | 0.624346 | 1_3:+59254759 | Msa0129350:CDS |
| GTAATGGCCGTTAGCCACGA+CGG | 0.633207 | 1_3:+59256657 | Msa0129350:CDS |
| TTTACGACTTAAGACATTTG+GGG | 0.637607 | 1_3:+59258957 | Msa0129350:three_prime_UTR |
| AGAATCTGGAAGGTTGAAGA+CGG | 0.646935 | 1_3:+59256211 | Msa0129350:CDS |
| GAGAAAGGTATTTCCCGTCG+TGG | 0.646943 | 1_3:-59256671 | None:intergenic |
| AAACATGAAACTGTTGCCCA+AGG | 0.647320 | 1_3:+59255593 | Msa0129350:CDS |
| GTTCTTGGAAGGTCCAAGCG+TGG | 0.648572 | 1_3:+59253794 | Msa0129350:CDS |
| AAAATCAACCAGCTAGACCA+AGG | 0.649835 | 1_3:+59258593 | Msa0129350:CDS |
| CAATGCTCCCCATTCTACTG+AGG | 0.662088 | 1_3:-59257880 | None:intergenic |
| TAGGCCACTCCATAATTCTG+AGG | 0.667952 | 1_3:-59255823 | None:intergenic |
| TGGTTCAGCGAGAATCTGGA+AGG | 0.668492 | 1_3:+59256201 | Msa0129350:CDS |
| TACCGAGTTGCGAGACAGAG+TGG | 0.677017 | 1_3:-59256245 | None:intergenic |
| AAGGAACTAACCCCTCTACA+GGG | 0.679695 | 1_3:+59255612 | Msa0129350:CDS |
| GACACCTCAGAATTATGGAG+TGG | 0.680012 | 1_3:+59255819 | Msa0129350:CDS |
| AATGATGCTGGATCACCTCA+GGG | 0.681405 | 1_3:+59253719 | Msa0129350:CDS |
| CCGCAAGTAACCGGACCCTG+AGG | 0.684658 | 1_3:-59253734 | None:intergenic |
| GGAACCAATACCCTGTAGAG+GGG | 0.704785 | 1_3:-59255622 | None:intergenic |
| GCTATTGCTGTGCACCCTAG+CGG | 0.708254 | 1_3:+59254792 | Msa0129350:CDS |
| CAATCATTTGATGATCAATG+GGG | 0.709097 | 1_3:+59258640 | Msa0129350:CDS |
| CTTACAACCTCAGTAGAATG+GGG | 0.712274 | 1_3:+59257873 | Msa0129350:CDS |
| ATTGAAGAGGAATACCAAAG+GGG | 0.723778 | 1_3:-59253882 | None:intergenic |
| ATGTTGCGATAGTTGTACCG+AGG | 0.735547 | 1_3:-59257635 | None:intergenic |
| CGAACAACAACACATAGACG+CGG | 0.749005 | 1_3:-59258679 | None:intergenic |
| TATAGCAAGAGACTACACCT+CGG | 0.778640 | 1_3:+59257618 | Msa0129350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATTAATTTTTATAT+TGG | - | chr1_3:59255256-59255275 | None:intergenic | 0.0% |
| !! | TTCTAAACTTAAAATAAAAA+GGG | - | chr1_3:59253978-59253997 | None:intergenic | 10.0% |
| !! | TTTCTAAACTTAAAATAAAA+AGG | - | chr1_3:59253979-59253998 | None:intergenic | 10.0% |
| !! | TATAAGTATTTATGCTATAA+GGG | - | chr1_3:59254085-59254104 | None:intergenic | 15.0% |
| !! | ATATAAGTATTTATGCTATA+AGG | - | chr1_3:59254086-59254105 | None:intergenic | 15.0% |
| !!! | TTTTTTCAAAAATGATATTG+AGG | + | chr1_3:59255294-59255313 | Msa0129350:intron | 15.0% |
| !!! | TTTTTCAAAAATGATATTGA+GGG | + | chr1_3:59255295-59255314 | Msa0129350:intron | 15.0% |
| !!! | AAAAGAAAATTTTGGATAAA+GGG | - | chr1_3:59256355-59256374 | None:intergenic | 15.0% |
| !!! | AAAAAGAAAATTTTGGATAA+AGG | - | chr1_3:59256356-59256375 | None:intergenic | 15.0% |
| !! | TTAAACATATTTAAGTCATT+TGG | + | chr1_3:59256735-59256754 | Msa0129350:intron | 15.0% |
| !!! | TTTATGTGAGTTTTTTAAAA+AGG | + | chr1_3:59257048-59257067 | Msa0129350:intron | 15.0% |
| !!! | ATTAGTCCAATTATTTTAAA+AGG | + | chr1_3:59257468-59257487 | Msa0129350:intron | 15.0% |
| !!! | AGTTTACCTTTTAAAATAAT+TGG | - | chr1_3:59257477-59257496 | None:intergenic | 15.0% |
| !! | ATGATTGATATTAATCAAAA+AGG | - | chr1_3:59257702-59257721 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGTTATATTCTA+TGG | - | chr1_3:59258004-59258023 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAACACAAATTG+TGG | - | chr1_3:59258237-59258256 | None:intergenic | 15.0% |
| !! | TGAAATATGAATTCAAAGTT+CGG | - | chr1_3:59253676-59253695 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTTCTGAGAATT+TGG | + | chr1_3:59253690-59253709 | Msa0129350:five_prime_UTR | 20.0% |
| !! | AAACTATATGTATATGTATG+TGG | + | chr1_3:59253909-59253928 | Msa0129350:intron | 20.0% |
| !! | AACTATATGTATATGTATGT+GGG | + | chr1_3:59253910-59253929 | Msa0129350:intron | 20.0% |
| !!! | TAAACTTTTGTGAGATTATT+AGG | - | chr1_3:59254360-59254379 | None:intergenic | 20.0% |
| !!! | ATTGTCCTTTAAAAAGTTAA+AGG | - | chr1_3:59255021-59255040 | None:intergenic | 20.0% |
| !! | AAAAACTGTGCAAAAAAATT+TGG | - | chr1_3:59255067-59255086 | None:intergenic | 20.0% |
| !! | CAAATTGAATTTGAATTGTT+TGG | + | chr1_3:59255205-59255224 | Msa0129350:intron | 20.0% |
| !!! | ATTAGAATTTAGAATTCTAC+TGG | - | chr1_3:59255970-59255989 | None:intergenic | 20.0% |
| !!! | GGTATAGTCTTTTTTATTTA+AGG | + | chr1_3:59256264-59256283 | Msa0129350:intron | 20.0% |
| !!! | AAAGAAAATTTTGGATAAAG+GGG | - | chr1_3:59256354-59256373 | None:intergenic | 20.0% |
| !!! | AAGAGACAAAAAGAAAATTT+TGG | - | chr1_3:59256363-59256382 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTTGTCTCTTT+AGG | + | chr1_3:59256364-59256383 | Msa0129350:intron | 20.0% |
| !! | AAAACTATAATTGTAAGGAA+AGG | - | chr1_3:59256985-59257004 | None:intergenic | 20.0% |
| !!! | TTTCCTTACAATTATAGTTT+TGG | + | chr1_3:59256984-59257003 | Msa0129350:intron | 20.0% |
| !! | ATTCCAAAACTATAATTGTA+AGG | - | chr1_3:59256990-59257009 | None:intergenic | 20.0% |
| !!! | TAGTTTTGGAATTGTTTATA+AGG | + | chr1_3:59256998-59257017 | Msa0129350:intron | 20.0% |
| !!! | TTTTCATGAAATATTTGAGA+AGG | + | chr1_3:59257101-59257120 | Msa0129350:intron | 20.0% |
| !! | TTTCATGAAATATTTGAGAA+GGG | + | chr1_3:59257102-59257121 | Msa0129350:intron | 20.0% |
| !!! | CATAGTTTTGTAAATATTAG+TGG | + | chr1_3:59257421-59257440 | Msa0129350:intron | 20.0% |
| !! | TAAAAGTTTAAAAAATGCAG+TGG | + | chr1_3:59257762-59257781 | Msa0129350:intron | 20.0% |
| !!! | AGCTTTTATTATTTTATGCA+GGG | + | chr1_3:59257845-59257864 | Msa0129350:intron | 20.0% |
| !! | AACAAAAATCAACATCAATT+CGG | + | chr1_3:59258042-59258061 | Msa0129350:intron | 20.0% |
| !! | AACAAATTTCGAAAACAATA+TGG | - | chr1_3:59258387-59258406 | None:intergenic | 20.0% |
| !!! | AAATTTTCAGCAAAAAGAAA+AGG | - | chr1_3:59258821-59258840 | None:intergenic | 20.0% |
| !! | TCAATTACATATCACAATAA+TGG | - | chr1_3:59258857-59258876 | None:intergenic | 20.0% |
| ! | TTATATAGAAATATCCGAAG+AGG | - | chr1_3:59253572-59253591 | None:intergenic | 25.0% |
| ! | ATATAGTTTGAGAATTGAAG+AGG | - | chr1_3:59253898-59253917 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_3:59254057-59254076 | None:intergenic | 25.0% |
| ! | TAAGCATTTGTGAGATTATT+AGG | - | chr1_3:59254244-59254263 | None:intergenic | 25.0% |
| ! | TATTTAAGCTATAAGCTGTA+AGG | + | chr1_3:59254386-59254405 | Msa0129350:intron | 25.0% |
| ! | TAAACATTCGTGAGATTATT+AGG | - | chr1_3:59254471-59254490 | None:intergenic | 25.0% |
| !!! | TGGTTTTAATCTTGAGTTTT+TGG | + | chr1_3:59254664-59254683 | Msa0129350:intron | 25.0% |
| ! | ATTATTCATAAAAGAGAGCA+AGG | - | chr1_3:59254891-59254910 | None:intergenic | 25.0% |
| ! | AAAGCTACTACTTTAAGTAA+CGG | + | chr1_3:59254967-59254986 | Msa0129350:intron | 25.0% |
| !!! | CTGTTCCTTTAACTTTTTAA+AGG | + | chr1_3:59255013-59255032 | Msa0129350:intron | 25.0% |
| !! | GTGTATGACATAATAGTTTT+AGG | + | chr1_3:59255113-59255132 | Msa0129350:intron | 25.0% |
| ! | CTACTCTTAAGAAATAAGTA+CGG | - | chr1_3:59255484-59255503 | None:intergenic | 25.0% |
| ! | ACTAAAAGTAATACATGTCT+GGG | - | chr1_3:59255646-59255665 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTAGTGTTGA+TGG | + | chr1_3:59255651-59255670 | Msa0129350:CDS | 25.0% |
| ! | ACAGCATAAAAACAATTTGT+TGG | - | chr1_3:59255721-59255740 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTAAGGACCTT+TGG | + | chr1_3:59256272-59256291 | Msa0129350:intron | 25.0% |
| ! | TAATCATGATTAAGTCATCT+AGG | + | chr1_3:59256824-59256843 | Msa0129350:intron | 25.0% |
| !!! | AAAATGATTTGGTAATCTCT+AGG | - | chr1_3:59256851-59256870 | None:intergenic | 25.0% |
| ! | TTGAGCAAAAGAAAATGATT+TGG | - | chr1_3:59256862-59256881 | None:intergenic | 25.0% |
| ! | AATTAGAAATGAGCATCATA+AGG | - | chr1_3:59256926-59256945 | None:intergenic | 25.0% |
| !!! | GAGAAAGTTATAGCTATTTT+AGG | + | chr1_3:59257078-59257097 | Msa0129350:intron | 25.0% |
| !! | TGGATTTGAACAAATACTTT+TGG | + | chr1_3:59257214-59257233 | Msa0129350:intron | 25.0% |
| !! | ATCAGATCTCTGTAATTTTA+GGG | + | chr1_3:59257539-59257558 | Msa0129350:intron | 25.0% |
| ! | GCATAAAATAATAAAAGCTC+AGG | - | chr1_3:59257844-59257863 | None:intergenic | 25.0% |
| !!! | GAGCTTTTATTATTTTATGC+AGG | + | chr1_3:59257844-59257863 | Msa0129350:intron | 25.0% |
| ! | AATGGTTAATGAATATGACA+TGG | + | chr1_3:59258111-59258130 | Msa0129350:intron | 25.0% |
| !!! | ATCATGTTTATTTTATCACG+TGG | - | chr1_3:59258205-59258224 | None:intergenic | 25.0% |
| ! | GATGGTTAATGAATATAACA+AGG | - | chr1_3:59258324-59258343 | None:intergenic | 25.0% |
| ! | AATTTCGAAAACAATATGGA+TGG | - | chr1_3:59258383-59258402 | None:intergenic | 25.0% |
| ! | ATTGATCATCAAATGATTGA+GGG | - | chr1_3:59258639-59258658 | None:intergenic | 25.0% |
| !! | TCAATCATTTGATGATCAAT+GGG | + | chr1_3:59258639-59258658 | Msa0129350:CDS | 25.0% |
| !! | CTGAAAATTTTAAACCCAAA+AGG | + | chr1_3:59258831-59258850 | Msa0129350:three_prime_UTR | 25.0% |
| ! | ATTTACGACTTAAGACATTT+GGG | + | chr1_3:59258956-59258975 | Msa0129350:three_prime_UTR | 25.0% |
| ! | CAAATTTCTGAGAATTTGGA+TGG | + | chr1_3:59253694-59253713 | Msa0129350:exon | 30.0% |
| !! | AACAACTAGGTTGAGATTTT+CGG | - | chr1_3:59253777-59253796 | None:intergenic | 30.0% |
| TAGACAAAGAAACGGTTATA+GGG | - | chr1_3:59253859-59253878 | None:intergenic | 30.0% | |
| AATTGAAGAGGAATACCAAA+GGG | - | chr1_3:59253886-59253905 | None:intergenic | 30.0% | |
| TTGCAGTTGTATATAGACTA+TGG | + | chr1_3:59254031-59254050 | Msa0129350:intron | 30.0% | |
| TATGCCTGTATATAACCTAT+AGG | + | chr1_3:59254262-59254281 | Msa0129350:intron | 30.0% | |
| TCACGAATGTTTATACAAGT+AGG | + | chr1_3:59254478-59254497 | Msa0129350:intron | 30.0% | |
| !! | TTATTTTGTGCATTCCCTTT+TGG | + | chr1_3:59254561-59254580 | Msa0129350:intron | 30.0% |
| TTTCTCAGCTAAAACCAAAA+GGG | - | chr1_3:59254578-59254597 | None:intergenic | 30.0% | |
| ATTTCTCAGCTAAAACCAAA+AGG | - | chr1_3:59254579-59254598 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGAACAAGATTGT+TGG | + | chr1_3:59254602-59254621 | Msa0129350:intron | 30.0% |
| !! | ATAATTCTGCTTTTGAAGAG+TGG | + | chr1_3:59254644-59254663 | Msa0129350:intron | 30.0% |
| !! | GAGTTTTTGGATCATGTAAT+TGG | + | chr1_3:59254677-59254696 | Msa0129350:intron | 30.0% |
| GTTAAAGGAACAGAAAATGT+TGG | - | chr1_3:59255006-59255025 | None:intergenic | 30.0% | |
| !!! | TAATAGTTTTAGGCTCAGTT+TGG | + | chr1_3:59255123-59255142 | Msa0129350:intron | 30.0% |
| TGAAGTAGAACTGTTAGTAA+CGG | - | chr1_3:59255409-59255428 | None:intergenic | 30.0% | |
| GCTTATATGTTATAAGCTTG+CGG | + | chr1_3:59255438-59255457 | Msa0129350:intron | 30.0% | |
| CACTAAAAGTAATACATGTC+TGG | - | chr1_3:59255647-59255666 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTTATGCTGTGTG+TGG | + | chr1_3:59255724-59255743 | Msa0129350:intron | 30.0% |
| AAGACAGAAGTAAAACATAC+AGG | - | chr1_3:59255783-59255802 | None:intergenic | 30.0% | |
| ! | AGATGAATGCATCTTTTAGA+AGG | - | chr1_3:59255941-59255960 | None:intergenic | 30.0% |
| TGACAAAACGAAAGACAATA+CGG | - | chr1_3:59256137-59256156 | None:intergenic | 30.0% | |
| TTTATTTAAGGACCTTTGGA+AGG | + | chr1_3:59256276-59256295 | Msa0129350:intron | 30.0% | |
| !!! | TGAATTATGTCGATTTTCCA+AGG | + | chr1_3:59256397-59256416 | Msa0129350:CDS | 30.0% |
| ! | GATACTCATACCTTTTTGAA+CGG | - | chr1_3:59256450-59256469 | None:intergenic | 30.0% |
| TCAAGTATGACCTTAATCAT+TGG | + | chr1_3:59256532-59256551 | Msa0129350:intron | 30.0% | |
| !! | ATTAGAGGTACCAATGATTA+AGG | - | chr1_3:59256545-59256564 | None:intergenic | 30.0% |
| !!! | TGGTACCTCTAATTTTGATT+AGG | + | chr1_3:59256552-59256571 | Msa0129350:intron | 30.0% |
| !!! | GGTACCTCTAATTTTGATTA+GGG | + | chr1_3:59256553-59256572 | Msa0129350:intron | 30.0% |
| !!! | GTACCTCTAATTTTGATTAG+GGG | + | chr1_3:59256554-59256573 | Msa0129350:intron | 30.0% |
| TATCCCCTAATCAAAATTAG+AGG | - | chr1_3:59256560-59256579 | None:intergenic | 30.0% | |
| ATGAGTTCATGGAACAAAAT+AGG | + | chr1_3:59256603-59256622 | Msa0129350:CDS | 30.0% | |
| TGAGTTCATGGAACAAAATA+GGG | + | chr1_3:59256604-59256623 | Msa0129350:CDS | 30.0% | |
| ATATAGGTTCTTACAGAGAA+AGG | - | chr1_3:59256689-59256708 | None:intergenic | 30.0% | |
| GATATGTGCAAGGTAAATAT+AGG | - | chr1_3:59256705-59256724 | None:intergenic | 30.0% | |
| CAAAACAATTGATATGTGCA+AGG | - | chr1_3:59256715-59256734 | None:intergenic | 30.0% | |
| TTTAAGTCATTTGGATAGCA+AGG | + | chr1_3:59256744-59256763 | Msa0129350:intron | 30.0% | |
| TTTGTCATATCTCAGAACTA+AGG | + | chr1_3:59257163-59257182 | Msa0129350:intron | 30.0% | |
| AGGATTTATGTTCGAATTGA+CGG | - | chr1_3:59257381-59257400 | None:intergenic | 30.0% | |
| TTGACTATAACGATTCTGAA+AGG | - | chr1_3:59257401-59257420 | None:intergenic | 30.0% | |
| ! | CTAATTTTATCTGTGATGCA+CGG | - | chr1_3:59257453-59257472 | None:intergenic | 30.0% |
| ! | CATCAGATCTCTGTAATTTT+AGG | + | chr1_3:59257538-59257557 | Msa0129350:intron | 30.0% |
| !!! | AATTTTAGGGCAAGTAAAGA+TGG | + | chr1_3:59257552-59257571 | Msa0129350:intron | 30.0% |
| ! | ATCATTCATGAACACACTTT+TGG | + | chr1_3:59257717-59257736 | Msa0129350:intron | 30.0% |
| ! | TCATTCATGAACACACTTTT+GGG | + | chr1_3:59257718-59257737 | Msa0129350:intron | 30.0% |
| GGCCTAAAATTTCAATCTAT+TGG | + | chr1_3:59257783-59257802 | Msa0129350:intron | 30.0% | |
| ! | GGCCAATAGATTGAAATTTT+AGG | - | chr1_3:59257788-59257807 | None:intergenic | 30.0% |
| ! | ACTAAGAGAACTGGTTTATT+AGG | - | chr1_3:59257809-59257828 | None:intergenic | 30.0% |
| AACTGAATGTACCTAAAGAT+TGG | + | chr1_3:59257910-59257929 | Msa0129350:CDS | 30.0% | |
| AATGTACCTAAAGATTGGAA+AGG | + | chr1_3:59257915-59257934 | Msa0129350:CDS | 30.0% | |
| AGATAACCTTTCCAATCTTT+AGG | - | chr1_3:59257924-59257943 | None:intergenic | 30.0% | |
| ! | ACGATTGTGAATGTGTTTTA+TGG | - | chr1_3:59257970-59257989 | None:intergenic | 30.0% |
| TATATTCTATGGTCTCAGAA+AGG | - | chr1_3:59257993-59258012 | None:intergenic | 30.0% | |
| AAAATCAACATCAATTCGGA+TGG | + | chr1_3:59258046-59258065 | Msa0129350:intron | 30.0% | |
| GTTAATGTCGTTCAAATATG+TGG | + | chr1_3:59258072-59258091 | Msa0129350:intron | 30.0% | |
| TAAACACAAATTGTGGTCAA+TGG | - | chr1_3:59258230-59258249 | None:intergenic | 30.0% | |
| AATGAACACCTGAAAAATCA+TGG | + | chr1_3:59258256-59258275 | Msa0129350:intron | 30.0% | |
| GTGTGGTTAATTACATTTAG+CGG | + | chr1_3:59258278-59258297 | Msa0129350:intron | 30.0% | |
| ! | TTTAGCGGATGATTAATGAT+TGG | + | chr1_3:59258293-59258312 | Msa0129350:intron | 30.0% |
| !!! | AGATATACTTGGTGCTTTTA+GGG | + | chr1_3:59258494-59258513 | Msa0129350:CDS | 30.0% |
| !!! | TTTAGGGCTATTTTTAGTGT+CGG | + | chr1_3:59258510-59258529 | Msa0129350:CDS | 30.0% |
| CATTGATCATCAAATGATTG+AGG | - | chr1_3:59258640-59258659 | None:intergenic | 30.0% | |
| ! | CTCAATCATTTGATGATCAA+TGG | + | chr1_3:59258638-59258657 | Msa0129350:CDS | 30.0% |
| ! | CAATCATTTGATGATCAATG+GGG | + | chr1_3:59258640-59258659 | Msa0129350:CDS | 30.0% |
| CTGTTTACACATGTAGAATT+AGG | + | chr1_3:59258758-59258777 | Msa0129350:three_prime_UTR | 30.0% | |
| ! | TATCACAATAATGGCCTTTT+GGG | - | chr1_3:59258848-59258867 | None:intergenic | 30.0% |
| ! | ATATCACAATAATGGCCTTT+TGG | - | chr1_3:59258849-59258868 | None:intergenic | 30.0% |
| GATTTACGACTTAAGACATT+TGG | + | chr1_3:59258955-59258974 | Msa0129350:three_prime_UTR | 30.0% | |
| TTTACGACTTAAGACATTTG+GGG | + | chr1_3:59258957-59258976 | Msa0129350:three_prime_UTR | 30.0% | |
| !!! | GGGCATTTTTTTTTAGCTTA+TGG | + | chr1_3:59258977-59258996 | Msa0129350:three_prime_UTR | 30.0% |
| ! | AGTTCGGTTCTTTTTCCAAT+CGG | - | chr1_3:59253660-59253679 | None:intergenic | 35.0% |
| !! | ACAACTAGGTTGAGATTTTC+GGG | - | chr1_3:59253776-59253795 | None:intergenic | 35.0% |
| AATCTCAACCTAGTTGTTCT+TGG | + | chr1_3:59253779-59253798 | Msa0129350:CDS | 35.0% | |
| GTAGACAAAGAAACGGTTAT+AGG | - | chr1_3:59253860-59253879 | None:intergenic | 35.0% | |
| ATTGAAGAGGAATACCAAAG+GGG | - | chr1_3:59253885-59253904 | None:intergenic | 35.0% | |
| GAATTGAAGAGGAATACCAA+AGG | - | chr1_3:59253887-59253906 | None:intergenic | 35.0% | |
| ATATAGACTATGGCCATGTT+TGG | + | chr1_3:59254041-59254060 | Msa0129350:intron | 35.0% | |
| ACAGTTTATGAACATGCCAT+AGG | + | chr1_3:59254214-59254233 | Msa0129350:intron | 35.0% | |
| ACAGCCTATAGGTTATATAC+AGG | - | chr1_3:59254269-59254288 | None:intergenic | 35.0% | |
| TAGCTTATGATACAGCCTAT+AGG | - | chr1_3:59254280-59254299 | None:intergenic | 35.0% | |
| ! | CTATAAGCTGTAAGGTATTC+TGG | + | chr1_3:59254394-59254413 | Msa0129350:intron | 35.0% |
| ! | TGTTTGGATCGACTTATTTC+AGG | - | chr1_3:59254507-59254526 | None:intergenic | 35.0% |
| TGAAATAAGTCGATCCAAAC+AGG | + | chr1_3:59254506-59254525 | Msa0129350:intron | 35.0% | |
| CTCAGCTTCTAACACAAAAT+TGG | - | chr1_3:59254757-59254776 | None:intergenic | 35.0% | |
| ! | CAATTTTGTGTTAGAAGCTG+AGG | + | chr1_3:59254755-59254774 | Msa0129350:CDS | 35.0% |
| ACATAAAATCATCACCGCTA+GGG | - | chr1_3:59254809-59254828 | None:intergenic | 35.0% | |
| TTTATGTGCTCTTTGAGCAA+TGG | + | chr1_3:59254822-59254841 | Msa0129350:CDS | 35.0% | |
| ! | AGCTTCTTTTCTAATAGCCA+TGG | + | chr1_3:59254857-59254876 | Msa0129350:intron | 35.0% |
| ! | GCTTCTTTTCTAATAGCCAT+GGG | + | chr1_3:59254858-59254877 | Msa0129350:intron | 35.0% |
| ! | TGTTCTTATTTCCTTGAGCT+AGG | + | chr1_3:59255087-59255106 | Msa0129350:intron | 35.0% |
| TATGTTATAAGCTTGCGGTT+TGG | + | chr1_3:59255443-59255462 | Msa0129350:intron | 35.0% | |
| ! | ATATTTTGCCTCGAGTTCTA+TGG | + | chr1_3:59255511-59255530 | Msa0129350:intron | 35.0% |
| AATCTAAACCATAGAACTCG+AGG | - | chr1_3:59255522-59255541 | None:intergenic | 35.0% | |
| TGTACCTAAAATCCATATCC+CGG | - | chr1_3:59255892-59255911 | None:intergenic | 35.0% | |
| TAGTCTAATTATTGCAGGCA+CGG | - | chr1_3:59256029-59256048 | None:intergenic | 35.0% | |
| TGCCTGCAATAATTAGACTA+AGG | + | chr1_3:59256029-59256048 | Msa0129350:intron | 35.0% | |
| CTCCTTAGTCTAATTATTGC+AGG | - | chr1_3:59256034-59256053 | None:intergenic | 35.0% | |
| AAATCTTCAGATCCTTCCAA+AGG | - | chr1_3:59256291-59256310 | None:intergenic | 35.0% | |
| !!! | TTATGTCGATTTTCCAAGGA+TGG | + | chr1_3:59256401-59256420 | Msa0129350:CDS | 35.0% |
| GGAACCAAACCATTTCTATT+TGG | + | chr1_3:59256422-59256441 | Msa0129350:CDS | 35.0% | |
| TAGAAAGTCTGCTTCAGTAA+TGG | + | chr1_3:59256641-59256660 | Msa0129350:CDS | 35.0% | |
| TTGTATTGCCAAAACTGTGA+AGG | + | chr1_3:59256777-59256796 | Msa0129350:intron | 35.0% | |
| TGTATTGCCAAAACTGTGAA+GGG | + | chr1_3:59256778-59256797 | Msa0129350:intron | 35.0% | |
| AGATATGACAAACATGGCAT+GGG | - | chr1_3:59257155-59257174 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATATGACAAACA+TGG | - | chr1_3:59257161-59257180 | None:intergenic | 35.0% |
| ! | AGAACTAAGGCTTCTCTTTT+GGG | + | chr1_3:59257176-59257195 | Msa0129350:intron | 35.0% |
| TTGGGCTGTTCAATTTGATA+TGG | + | chr1_3:59257194-59257213 | Msa0129350:intron | 35.0% | |
| AGCTCAAGATTATACAAGCA+AGG | - | chr1_3:59257518-59257537 | None:intergenic | 35.0% | |
| GTGGATATTTACCTTTCACT+AGG | - | chr1_3:59257672-59257691 | None:intergenic | 35.0% | |
| TGAAAGGTAAATATCCACAC+TGG | + | chr1_3:59257674-59257693 | Msa0129350:intron | 35.0% | |
| !! | TAATCAAAAAGGTACCAGTG+TGG | - | chr1_3:59257691-59257710 | None:intergenic | 35.0% |
| ! | CATTCATGAACACACTTTTG+GGG | + | chr1_3:59257719-59257738 | Msa0129350:intron | 35.0% |
| TAAACCAGTTCTCTTAGTCT+TGG | + | chr1_3:59257811-59257830 | Msa0129350:intron | 35.0% | |
| TACTTACAACCTCAGTAGAA+TGG | + | chr1_3:59257871-59257890 | Msa0129350:CDS | 35.0% | |
| ACTTACAACCTCAGTAGAAT+GGG | + | chr1_3:59257872-59257891 | Msa0129350:CDS | 35.0% | |
| ! | ATTTTATCACGTGGAGATGA+CGG | - | chr1_3:59258196-59258215 | None:intergenic | 35.0% |
| ! | TAACCACACCATGATTTTTC+AGG | - | chr1_3:59258267-59258286 | None:intergenic | 35.0% |
| ! | ATGTGGTTAGTTACGTTTCA+TGG | - | chr1_3:59258346-59258365 | None:intergenic | 35.0% |
| ! | TGGTTGGTGCAATTTAAATG+TGG | - | chr1_3:59258363-59258382 | None:intergenic | 35.0% |
| TCGAAAACAATATGGATGGT+TGG | - | chr1_3:59258379-59258398 | None:intergenic | 35.0% | |
| !!! | CAGATATACTTGGTGCTTTT+AGG | + | chr1_3:59258493-59258512 | Msa0129350:CDS | 35.0% |
| !! | CTCATCATTGGTTTAAACCT+TGG | - | chr1_3:59258613-59258632 | None:intergenic | 35.0% |
| ! | TCTATGTGTTGTTGTTCGAT+TGG | + | chr1_3:59258684-59258703 | Msa0129350:three_prime_UTR | 35.0% |
| GTGGTATCAAAATTCAACTC+AGG | + | chr1_3:59258728-59258747 | Msa0129350:three_prime_UTR | 35.0% | |
| ! | AAATTTGCAAGTTGAGCTTG+AGG | + | chr1_3:59258912-59258931 | Msa0129350:three_prime_UTR | 35.0% |
| TTGAGGCTGTTATGTAATCA+TGG | + | chr1_3:59258929-59258948 | Msa0129350:three_prime_UTR | 35.0% | |
| ! | GCAAGTTGTTTGTTGGATAG+TGG | - | chr1_3:59253528-59253547 | None:intergenic | 40.0% |
| AATGAGCGCAAGTTGTTTGT+TGG | - | chr1_3:59253535-59253554 | None:intergenic | 40.0% | |
| ! | TTGATTTTCAGTGACCCGAT+TGG | + | chr1_3:59253642-59253661 | Msa0129350:five_prime_UTR | 40.0% |
| ! | GTTCGGTTCTTTTTCCAATC+GGG | - | chr1_3:59253659-59253678 | None:intergenic | 40.0% |
| ATTTGGATGGAGAATGATGC+TGG | + | chr1_3:59253707-59253726 | Msa0129350:exon | 40.0% | |
| TCAACCTAGTTGTTCTTGGA+AGG | + | chr1_3:59253783-59253802 | Msa0129350:CDS | 40.0% | |
| ! | GAGAAAATCTGAAGCAAAGC+AGG | - | chr1_3:59253830-59253849 | None:intergenic | 40.0% |
| AGAAACGGTTATAGGGTCAA+AGG | - | chr1_3:59253852-59253871 | None:intergenic | 40.0% | |
| AGGGGAAGTAGACAAAGAAA+CGG | - | chr1_3:59253867-59253886 | None:intergenic | 40.0% | |
| TTCTTTGTCTACTTCCCCTT+TGG | + | chr1_3:59253868-59253887 | Msa0129350:CDS | 40.0% | |
| GAGATTATTAGGAGAGCCTA+TGG | - | chr1_3:59254233-59254252 | None:intergenic | 40.0% | |
| GGCTGTATCATAAGCTATTC+TGG | + | chr1_3:59254283-59254302 | Msa0129350:intron | 40.0% | |
| GCATATGCATCACTCTACAT+AGG | - | chr1_3:59254533-59254552 | None:intergenic | 40.0% | |
| TTCCTGAACAAGATTGTTGG+TGG | + | chr1_3:59254605-59254624 | Msa0129350:intron | 40.0% | |
| TTCCACCAACAATCTTGTTC+AGG | - | chr1_3:59254610-59254629 | None:intergenic | 40.0% | |
| GGATCATGTAATTGGAAGTG+TGG | + | chr1_3:59254685-59254704 | Msa0129350:intron | 40.0% | |
| TTTGTGTTAGAAGCTGAGGA+AGG | + | chr1_3:59254759-59254778 | Msa0129350:CDS | 40.0% | |
| CACATAAAATCATCACCGCT+AGG | - | chr1_3:59254810-59254829 | None:intergenic | 40.0% | |
| CTACTACTTTAAGTAACGGC+AGG | + | chr1_3:59254971-59254990 | Msa0129350:intron | 40.0% | |
| ATTTGGTACAACTGAGCATG+CGG | - | chr1_3:59255050-59255069 | None:intergenic | 40.0% | |
| GTAGATGACTGATAAGCTAG+CGG | + | chr1_3:59255155-59255174 | Msa0129350:intron | 40.0% | |
| TGCAGATTGTTTGAGCTCTA+TGG | + | chr1_3:59255561-59255580 | Msa0129350:intron | 40.0% | |
| AAACATGAAACTGTTGCCCA+AGG | + | chr1_3:59255593-59255612 | Msa0129350:CDS | 40.0% | |
| !! | GATGGATCTAAATTTGCTGC+TGG | + | chr1_3:59255669-59255688 | Msa0129350:CDS | 40.0% |
| !! | GATCTAAATTTGCTGCTGGT+GGG | + | chr1_3:59255673-59255692 | Msa0129350:CDS | 40.0% |
| CTTCTGTCTTTAACACGTGT+AGG | + | chr1_3:59255793-59255812 | Msa0129350:intron | 40.0% | |
| TGTCTTTAACACGTGTAGGA+TGG | + | chr1_3:59255797-59255816 | Msa0129350:intron | 40.0% | |
| TCCAAAATTATGCGCATGCT+AGG | - | chr1_3:59255845-59255864 | None:intergenic | 40.0% | |
| ! | CAAAAGCACACAAATCTGTC+CGG | + | chr1_3:59255870-59255889 | Msa0129350:CDS | 40.0% |
| ! | AAAAGCACACAAATCTGTCC+GGG | + | chr1_3:59255871-59255890 | Msa0129350:CDS | 40.0% |
| CAATGTCATCAAGGTTTCAC+AGG | - | chr1_3:59256107-59256126 | None:intergenic | 40.0% | |
| GGTCAGTATCAATGTCATCA+AGG | - | chr1_3:59256116-59256135 | None:intergenic | 40.0% | |
| CTAGCTTCAACTTCTACTGA+TGG | + | chr1_3:59256181-59256200 | Msa0129350:CDS | 40.0% | |
| AGAATCTGGAAGGTTGAAGA+CGG | + | chr1_3:59256211-59256230 | Msa0129350:CDS | 40.0% | |
| !! | AAATGGTTTGGTTCCATCCT+TGG | - | chr1_3:59256417-59256436 | None:intergenic | 40.0% |
| ATAAGTCTCTTACAGCGGTT+TGG | + | chr1_3:59256577-59256596 | Msa0129350:CDS | 40.0% | |
| TAAGTCTCTTACAGCGGTTT+GGG | + | chr1_3:59256578-59256597 | Msa0129350:CDS | 40.0% | |
| AAGTCATTTGGATAGCAAGG+TGG | + | chr1_3:59256747-59256766 | Msa0129350:intron | 40.0% | |
| ! | TTCTTCACCCTTCACAGTTT+TGG | - | chr1_3:59256788-59256807 | None:intergenic | 40.0% |
| GAGATATGACAAACATGGCA+TGG | - | chr1_3:59257156-59257175 | None:intergenic | 40.0% | |
| ! | CAGAACTAAGGCTTCTCTTT+TGG | + | chr1_3:59257175-59257194 | Msa0129350:intron | 40.0% |
| ! | GGTGTAGTCTCTTGCTATAA+TGG | - | chr1_3:59257617-59257636 | None:intergenic | 40.0% |
| TATAGCAAGAGACTACACCT+CGG | + | chr1_3:59257618-59257637 | Msa0129350:CDS | 40.0% | |
| TGGATTTCTGTCCTAGTGAA+AGG | + | chr1_3:59257658-59257677 | Msa0129350:CDS | 40.0% | |
| ATAGCCAAGACTAAGAGAAC+TGG | - | chr1_3:59257818-59257837 | None:intergenic | 40.0% | |
| CTTACAACCTCAGTAGAATG+GGG | + | chr1_3:59257873-59257892 | Msa0129350:CDS | 40.0% | |
| TCAACATCAATTCGGATGGA+TGG | + | chr1_3:59258050-59258069 | Msa0129350:intron | 40.0% | |
| GGTTAATTACGCTCAGTGAA+TGG | + | chr1_3:59258093-59258112 | Msa0129350:intron | 40.0% | |
| ACTGTCCATTGAACGTGATT+AGG | + | chr1_3:59258149-59258168 | Msa0129350:intron | 40.0% | |
| ACACCTGAAAAATCATGGTG+TGG | + | chr1_3:59258261-59258280 | Msa0129350:intron | 40.0% | |
| AGCGGATGATTAATGATTGG+TGG | + | chr1_3:59258296-59258315 | Msa0129350:intron | 40.0% | |
| ! | GGTTAGTTACGTTTCATGGA+TGG | - | chr1_3:59258342-59258361 | None:intergenic | 40.0% |
| !!! | GCTGGTTGATTTTTTCCCAT+TGG | - | chr1_3:59258586-59258605 | None:intergenic | 40.0% |
| AAAATCAACCAGCTAGACCA+AGG | + | chr1_3:59258593-59258612 | Msa0129350:CDS | 40.0% | |
| GTAGTATCAGTAGCTGTAAG+TGG | + | chr1_3:59258709-59258728 | Msa0129350:three_prime_UTR | 40.0% | |
| GGCTGTTATGTAATCATGGA+TGG | + | chr1_3:59258933-59258952 | Msa0129350:three_prime_UTR | 40.0% | |
| ATCCGAAGAGGAAAGAGAGA+GGG | - | chr1_3:59253560-59253579 | None:intergenic | 45.0% | |
| TATCCGAAGAGGAAAGAGAG+AGG | - | chr1_3:59253561-59253580 | None:intergenic | 45.0% | |
| AATGATGCTGGATCACCTCA+GGG | + | chr1_3:59253719-59253738 | Msa0129350:CDS | 45.0% | |
| TTACTTGCGGGTCATGGATT+CGG | + | chr1_3:59253747-59253766 | Msa0129350:CDS | 45.0% | |
| TGGACCTTCCAAGAACAACT+AGG | - | chr1_3:59253790-59253809 | None:intergenic | 45.0% | |
| AGGACAAGAATTTCCACGCT+TGG | - | chr1_3:59253810-59253829 | None:intergenic | 45.0% | |
| CACTCTACATAGGACCTGTT+TGG | - | chr1_3:59254523-59254542 | None:intergenic | 45.0% | |
| AGAGCAAGGTTTCAATCCCA+TGG | - | chr1_3:59254877-59254896 | None:intergenic | 45.0% | |
| TCATACACTCTCCTAGCTCA+AGG | - | chr1_3:59255101-59255120 | None:intergenic | 45.0% | |
| ! | ACTGATAAGCTAGCGGATAG+TGG | + | chr1_3:59255162-59255181 | Msa0129350:intron | 45.0% |
| !! | TGTAGAGGGGTTAGTTCCTT+GGG | - | chr1_3:59255612-59255631 | None:intergenic | 45.0% |
| AAGGAACTAACCCCTCTACA+GGG | + | chr1_3:59255612-59255631 | Msa0129350:CDS | 45.0% | |
| !! | GGATCTAAATTTGCTGCTGG+TGG | + | chr1_3:59255672-59255691 | Msa0129350:CDS | 45.0% |
| !! | TAAATTTGCTGCTGGTGGGT+CGG | + | chr1_3:59255677-59255696 | Msa0129350:CDS | 45.0% |
| GGATGGACACCTCAGAATTA+TGG | + | chr1_3:59255814-59255833 | Msa0129350:intron | 45.0% | |
| GACACCTCAGAATTATGGAG+TGG | + | chr1_3:59255819-59255838 | Msa0129350:CDS | 45.0% | |
| TAGGCCACTCCATAATTCTG+AGG | - | chr1_3:59255826-59255845 | None:intergenic | 45.0% | |
| ! | GCCTAGCATGCGCATAATTT+TGG | + | chr1_3:59255841-59255860 | Msa0129350:CDS | 45.0% |
| ! | CGGACAGATTTGTGTGCTTT+TGG | - | chr1_3:59255872-59255891 | None:intergenic | 45.0% |
| ACACAAATCTGTCCGGGATA+TGG | + | chr1_3:59255877-59255896 | Msa0129350:CDS | 45.0% | |
| ! | CTGTCCGGGATATGGATTTT+AGG | + | chr1_3:59255885-59255904 | Msa0129350:CDS | 45.0% |
| GGCGCCAAATAGAAATGGTT+TGG | - | chr1_3:59256429-59256448 | None:intergenic | 45.0% | |
| TGAACGGCGCCAAATAGAAA+TGG | - | chr1_3:59256434-59256453 | None:intergenic | 45.0% | |
| CTATTTGGCGCCGTTCAAAA+AGG | + | chr1_3:59256437-59256456 | Msa0129350:CDS | 45.0% | |
| AGGGGATAAGTCTCTTACAG+CGG | + | chr1_3:59256572-59256591 | Msa0129350:intron | 45.0% | |
| ! | CGGTTTGGGATATGAGTTCA+TGG | + | chr1_3:59256592-59256611 | Msa0129350:CDS | 45.0% |
| GGAACAAAATAGGGCACAAG+AGG | + | chr1_3:59256613-59256632 | Msa0129350:CDS | 45.0% | |
| ATGTTGCGATAGTTGTACCG+AGG | - | chr1_3:59257638-59257657 | None:intergenic | 45.0% | |
| CGGTACAACTATCGCAACAT+TGG | + | chr1_3:59257638-59257657 | Msa0129350:CDS | 45.0% | |
| TATGGATGTGTGCGAGCATA+TGG | - | chr1_3:59257952-59257971 | None:intergenic | 45.0% | |
| TCGTGCCTAATCACGTTCAA+TGG | - | chr1_3:59258157-59258176 | None:intergenic | 45.0% | |
| ! | TCGAGAACTCTGATTCGTTC+TGG | + | chr1_3:59258554-59258573 | Msa0129350:CDS | 45.0% |
| ! | CGAGAACTCTGATTCGTTCT+GGG | + | chr1_3:59258555-59258574 | Msa0129350:CDS | 45.0% |
| ! | GAGAACTCTGATTCGTTCTG+GGG | + | chr1_3:59258556-59258575 | Msa0129350:CDS | 45.0% |
| !! | TTCGTTCTGGGGATTTCCAA+TGG | + | chr1_3:59258567-59258586 | Msa0129350:CDS | 45.0% |
| !! | TCGTTCTGGGGATTTCCAAT+GGG | + | chr1_3:59258568-59258587 | Msa0129350:CDS | 45.0% |
| GGTTTAAACCTTGGTCTAGC+TGG | - | chr1_3:59258604-59258623 | None:intergenic | 45.0% | |
| GATTGAGGGTCTCTCATCAT+TGG | - | chr1_3:59258625-59258644 | None:intergenic | 45.0% | |
| CGAACAACAACACATAGACG+CGG | - | chr1_3:59258682-59258701 | None:intergenic | 45.0% | |
| !!! | AAATATCATATTTAATTTAA+TGG | + | chr1_3:59257288-59257307 | Msa0129350:intron | 5.0% |
| !!! | AATATCATATTTAATTTAAT+GGG | + | chr1_3:59257289-59257308 | Msa0129350:intron | 5.0% |
| GACCCTCTCTCTTTCCTCTT+CGG | + | chr1_3:59253555-59253574 | Msa0129350:five_prime_UTR | 50.0% | |
| GAATGATGCTGGATCACCTC+AGG | + | chr1_3:59253718-59253737 | Msa0129350:CDS | 50.0% | |
| ATCCATGACCCGCAAGTAAC+CGG | - | chr1_3:59253746-59253765 | None:intergenic | 50.0% | |
| AGAAGCTGAGGAAGGTGATC+CGG | + | chr1_3:59254767-59254786 | Msa0129350:CDS | 50.0% | |
| !! | CTGTAGAGGGGTTAGTTCCT+TGG | - | chr1_3:59255613-59255632 | None:intergenic | 50.0% |
| CAAGGAACTAACCCCTCTAC+AGG | + | chr1_3:59255611-59255630 | Msa0129350:CDS | 50.0% | |
| CTAACCCCTCTACAGGGTAT+TGG | + | chr1_3:59255618-59255637 | Msa0129350:CDS | 50.0% | |
| GGAACCAATACCCTGTAGAG+GGG | - | chr1_3:59255625-59255644 | None:intergenic | 50.0% | |
| GGGAACCAATACCCTGTAGA+GGG | - | chr1_3:59255626-59255645 | None:intergenic | 50.0% | |
| TGGGAACCAATACCCTGTAG+AGG | - | chr1_3:59255627-59255646 | None:intergenic | 50.0% | |
| CTGATGGTTCAGCGAGAATC+TGG | + | chr1_3:59256197-59256216 | Msa0129350:CDS | 50.0% | |
| TGGTTCAGCGAGAATCTGGA+AGG | + | chr1_3:59256201-59256220 | Msa0129350:CDS | 50.0% | |
| GTATTTCCCGTCGTGGCTAA+CGG | - | chr1_3:59256667-59256686 | None:intergenic | 50.0% | |
| !! | GAGAAAGGTATTTCCCGTCG+TGG | - | chr1_3:59256674-59256693 | None:intergenic | 50.0% |
| CAATGCTCCCCATTCTACTG+AGG | - | chr1_3:59257883-59257902 | None:intergenic | 50.0% | |
| ! | CTCAGTAGAATGGGGAGCAT+TGG | + | chr1_3:59257881-59257900 | Msa0129350:CDS | 50.0% |
| AGACGCGGTCACATATCTAC+TGG | - | chr1_3:59258667-59258686 | None:intergenic | 50.0% | |
| GTTCTTGGAAGGTCCAAGCG+TGG | + | chr1_3:59253794-59253813 | Msa0129350:CDS | 55.0% | |
| GGGTGCACAGCAATAGCAAC+CGG | - | chr1_3:59254789-59254808 | None:intergenic | 55.0% | |
| GCTATTGCTGTGCACCCTAG+CGG | + | chr1_3:59254792-59254811 | Msa0129350:CDS | 55.0% | |
| TTGCGAGACAGAGTGGTCAC+AGG | - | chr1_3:59256241-59256260 | None:intergenic | 55.0% | |
| GACCACTCTGTCTCGCAACT+CGG | + | chr1_3:59256243-59256262 | Msa0129350:CDS | 55.0% | |
| TACCGAGTTGCGAGACAGAG+TGG | - | chr1_3:59256248-59256267 | None:intergenic | 55.0% | |
| GTAATGGCCGTTAGCCACGA+CGG | + | chr1_3:59256657-59256676 | Msa0129350:CDS | 55.0% | |
| TAATGGCCGTTAGCCACGAC+GGG | + | chr1_3:59256658-59256677 | Msa0129350:CDS | 55.0% | |
| TGCTGGATCACCTCAGGGTC+CGG | + | chr1_3:59253724-59253743 | Msa0129350:CDS | 60.0% | |
| CCTCAGGGTCCGGTTACTTG+CGG | + | chr1_3:59253734-59253753 | Msa0129350:CDS | 60.0% | |
| CTCAGGGTCCGGTTACTTGC+GGG | + | chr1_3:59253735-59253754 | Msa0129350:CDS | 60.0% | |
| GTCCGGTTACTTGCGGGTCA+TGG | + | chr1_3:59253741-59253760 | Msa0129350:CDS | 60.0% | |
| CCGCAAGTAACCGGACCCTG+AGG | - | chr1_3:59253737-59253756 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59253486 | 59259020 | 59253486 | ID=Msa0129350;Name=Msa0129350 |
| chr1_3 | mRNA | 59253486 | 59259020 | 59253486 | ID=Msa0129350-mRNA-1;Parent=Msa0129350;Name=Msa0129350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=227|1|1|1|1|1|10|342|392 |
| chr1_3 | exon | 59253486 | 59253889 | 59253486 | ID=Msa0129350-mRNA-1:exon:19208;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59254753 | 59254853 | 59254753 | ID=Msa0129350-mRNA-1:exon:19209;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59255566 | 59255698 | 59255566 | ID=Msa0129350-mRNA-1:exon:19210;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59255815 | 59255906 | 59255815 | ID=Msa0129350-mRNA-1:exon:19211;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59256165 | 59256264 | 59256165 | ID=Msa0129350-mRNA-1:exon:19212;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59256386 | 59256458 | 59256386 | ID=Msa0129350-mRNA-1:exon:19213;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59256574 | 59256694 | 59256574 | ID=Msa0129350-mRNA-1:exon:19214;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59257560 | 59257679 | 59257560 | ID=Msa0129350-mRNA-1:exon:19215;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59257866 | 59257936 | 59257866 | ID=Msa0129350-mRNA-1:exon:19216;Parent=Msa0129350-mRNA-1 |
| chr1_3 | exon | 59258488 | 59259020 | 59258488 | ID=Msa0129350-mRNA-1:exon:19217;Parent=Msa0129350-mRNA-1 |
| chr1_3 | five_prime_UTR | 59253486 | 59253712 | 59253486 | ID=Msa0129350-mRNA-1:five_prime_utr;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59253713 | 59253889 | 59253713 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59254753 | 59254853 | 59254753 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59255566 | 59255698 | 59255566 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59255815 | 59255906 | 59255815 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59256165 | 59256264 | 59256165 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59256386 | 59256458 | 59256386 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59256574 | 59256694 | 59256574 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59257560 | 59257679 | 59257560 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59257866 | 59257936 | 59257866 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | CDS | 59258488 | 59258678 | 59258488 | ID=Msa0129350-mRNA-1:cds;Parent=Msa0129350-mRNA-1 |
| chr1_3 | three_prime_UTR | 59258679 | 59259020 | 59258679 | ID=Msa0129350-mRNA-1:three_prime_utr;Parent=Msa0129350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
