Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035300 | XP_013469319.1 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035300 | sp|Q8GYE0|PHF1_ARATH | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 2.39e-179 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa0035300 | 0.800895 | 1.162807e-48 | -8.615850e-47 |
| Msa0035300 | Msa0129350 | 0.958464 | 2.207430e-116 | -8.615850e-47 |
| Msa0035300 | Msa0176030 | 0.928642 | 2.163870e-92 | -8.615850e-47 |
| Msa0035300 | Msa0189610 | 0.804522 | 2.074580e-49 | -8.615850e-47 |
| Msa0035300 | Msa0403490 | 0.804382 | 2.218566e-49 | -8.615850e-47 |
| Msa0035300 | Msa0746970 | 0.966408 | 7.011640e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035300 | MtrunA17_Chr1g0197641 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Msa0035300 | MtrunA17_Chr4g0043971 | 32.424 | 330 | 205 | 8 | 30 | 348 | 72 | 394 | 1.44e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035300 | AT3G52190.1 | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 2.43e-180 | 507 |
| Msa0035300 | AT5G50650.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.83e-42 | 153 |
| Msa0035300 | AT5G50550.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.83e-42 | 153 |
| Msa0035300 | AT2G01470.1 | 33.673 | 294 | 181 | 9 | 41 | 327 | 76 | 362 | 3.75e-39 | 144 |
Find 133 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAAATTTCTGAGAATT+TGG | 0.127504 | 1_1:-63437993 | Msa0035300:five_prime_UTR |
| GCCTAGCATGCGCATAATTT+TGG | 0.182728 | 1_1:-63435842 | Msa0035300:CDS |
| ATGAGTTCATGGAACAAAAT+AGG | 0.220715 | 1_1:-63435080 | Msa0035300:CDS |
| GGAACCAAACCATTTCTATT+TGG | 0.223219 | 1_1:-63435261 | Msa0035300:CDS |
| CGGACAGATTTGTGTGCTTT+TGG | 0.240942 | 1_1:+63435814 | None:intergenic |
| TCGAGAACTCTGATTCGTTC+TGG | 0.241586 | 1_1:-63433129 | Msa0035300:CDS |
| AATCTCAACCTAGTTGTTCT+TGG | 0.269966 | 1_1:-63437904 | Msa0035300:CDS |
| CTCAGCTTCTAACACAAAAT+TGG | 0.284131 | 1_1:+63436929 | None:intergenic |
| ATATCACAATAATGGCCTTT+TGG | 0.288267 | 1_1:+63432837 | None:intergenic |
| AGATAACCTTTCCAATCTTT+AGG | 0.319043 | 1_1:+63433762 | None:intergenic |
| ACACAAATCTGTCCGGGATA+TGG | 0.322553 | 1_1:-63435806 | Msa0035300:CDS |
| GATTTACGACTTAAGACATT+TGG | 0.331779 | 1_1:-63432728 | Msa0035300:three_prime_UTR |
| CGAGAACTCTGATTCGTTCT+GGG | 0.331945 | 1_1:-63433128 | Msa0035300:CDS |
| GTAGACAAAGAAACGGTTAT+AGG | 0.338185 | 1_1:+63437826 | None:intergenic |
| CTGATGGTTCAGCGAGAATC+TGG | 0.344529 | 1_1:-63435486 | Msa0035300:CDS |
| GGATGGACACCTCAGAATTA+TGG | 0.345586 | 1_1:-63435869 | Msa0035300:CDS |
| AAATGGTTTGGTTCCATCCT+TGG | 0.346387 | 1_1:+63435269 | None:intergenic |
| CTGTAGAGGGGTTAGTTCCT+TGG | 0.349847 | 1_1:+63436073 | None:intergenic |
| CTCATCATTGGTTTAAACCT+TGG | 0.350046 | 1_1:+63433073 | None:intergenic |
| CTCAGGGTCCGGTTACTTGC+GGG | 0.357610 | 1_1:-63437948 | Msa0035300:CDS |
| CTATTTGGCGCCGTTCAAAA+AGG | 0.360925 | 1_1:-63435246 | Msa0035300:intron |
| TTCTTTGTCTACTTCCCCTT+TGG | 0.362793 | 1_1:-63437815 | Msa0035300:intron |
| CTGTTTACACATGTAGAATT+AGG | 0.365054 | 1_1:-63432925 | Msa0035300:three_prime_UTR |
| CACTAAAAGTAATACATGTC+TGG | 0.366135 | 1_1:+63436039 | None:intergenic |
| ATTTACGACTTAAGACATTT+GGG | 0.366926 | 1_1:-63432727 | Msa0035300:three_prime_UTR |
| GACCCTCTCTCTTTCCTCTT+CGG | 0.369254 | 1_1:-63438128 | Msa0035300:five_prime_UTR |
| TCAATTACATATCACAATAA+TGG | 0.376203 | 1_1:+63432829 | None:intergenic |
| GATTGAGGGTCTCTCATCAT+TGG | 0.378056 | 1_1:+63433061 | None:intergenic |
| ATCCATGACCCGCAAGTAAC+CGG | 0.389128 | 1_1:+63437940 | None:intergenic |
| TGCAGATTGTTTGAGCTCTA+TGG | 0.390492 | 1_1:-63436122 | Msa0035300:intron |
| CTCAATCATTTGATGATCAA+TGG | 0.390908 | 1_1:-63433045 | Msa0035300:CDS |
| AATGAGCGCAAGTTGTTTGT+TGG | 0.392138 | 1_1:+63438151 | None:intergenic |
| TAAGTCTCTTACAGCGGTTT+GGG | 0.395510 | 1_1:-63435105 | Msa0035300:CDS |
| TTACTTGCGGGTCATGGATT+CGG | 0.400800 | 1_1:-63437936 | Msa0035300:CDS |
| ATAAGTCTCTTACAGCGGTT+TGG | 0.404946 | 1_1:-63435106 | Msa0035300:CDS |
| TGAGTTCATGGAACAAAATA+GGG | 0.405250 | 1_1:-63435079 | Msa0035300:CDS |
| TCAATCATTTGATGATCAAT+GGG | 0.405468 | 1_1:-63433044 | Msa0035300:CDS |
| AACTGAATGTACCTAAAGAT+TGG | 0.410490 | 1_1:-63433773 | Msa0035300:CDS |
| GGTTTAAACCTTGGTCTAGC+TGG | 0.411531 | 1_1:+63433082 | None:intergenic |
| TGAAATATGAATTCAAAGTT+CGG | 0.417229 | 1_1:+63438010 | None:intergenic |
| GGCGCCAAATAGAAATGGTT+TGG | 0.423691 | 1_1:+63435257 | None:intergenic |
| CGGTTTGGGATATGAGTTCA+TGG | 0.428050 | 1_1:-63435091 | Msa0035300:CDS |
| GTCCGGTTACTTGCGGGTCA+TGG | 0.431039 | 1_1:-63437942 | Msa0035300:CDS |
| GGTGTAGTCTCTTGCTATAA+TGG | 0.431141 | 1_1:+63434069 | None:intergenic |
| TGTAGAGGGGTTAGTTCCTT+GGG | 0.433022 | 1_1:+63436074 | None:intergenic |
| TGAACGGCGCCAAATAGAAA+TGG | 0.434674 | 1_1:+63435252 | None:intergenic |
| GCAAGTTGTTTGTTGGATAG+TGG | 0.441867 | 1_1:+63438158 | None:intergenic |
| ACTTACAACCTCAGTAGAAT+GGG | 0.444696 | 1_1:-63433811 | Msa0035300:CDS |
| GAGAAAATCTGAAGCAAAGC+AGG | 0.450891 | 1_1:+63437856 | None:intergenic |
| TGCTGGATCACCTCAGGGTC+CGG | 0.464290 | 1_1:-63437959 | Msa0035300:CDS |
| CAAATTTCTGAGAATTTGGA+TGG | 0.465035 | 1_1:-63437989 | Msa0035300:exon |
| TAGACAAAGAAACGGTTATA+GGG | 0.466115 | 1_1:+63437827 | None:intergenic |
| GAATGATGCTGGATCACCTC+AGG | 0.466193 | 1_1:-63437965 | Msa0035300:CDS |
| TACTTACAACCTCAGTAGAA+TGG | 0.468911 | 1_1:-63433812 | Msa0035300:CDS |
| GGGTGCACAGCAATAGCAAC+CGG | 0.474667 | 1_1:+63436897 | None:intergenic |
| CAAGGAACTAACCCCTCTAC+AGG | 0.483255 | 1_1:-63436072 | Msa0035300:CDS |
| TTCGTTCTGGGGATTTCCAA+TGG | 0.491126 | 1_1:-63433116 | Msa0035300:CDS |
| CTCAGTAGAATGGGGAGCAT+TGG | 0.494832 | 1_1:-63433802 | Msa0035300:CDS |
| CTAACCCCTCTACAGGGTAT+TGG | 0.495022 | 1_1:-63436065 | Msa0035300:CDS |
| ATATAGGTTCTTACAGAGAA+AGG | 0.496610 | 1_1:+63434997 | None:intergenic |
| CAAAAGCACACAAATCTGTC+CGG | 0.496650 | 1_1:-63435813 | Msa0035300:CDS |
| CATTGATCATCAAATGATTG+AGG | 0.497207 | 1_1:+63433046 | None:intergenic |
| GGATCTAAATTTGCTGCTGG+TGG | 0.498037 | 1_1:-63436011 | Msa0035300:CDS |
| CCTCAGGGTCCGGTTACTTG+CGG | 0.499353 | 1_1:-63437949 | Msa0035300:CDS |
| CGGTACAACTATCGCAACAT+TGG | 0.505371 | 1_1:-63434045 | Msa0035300:CDS |
| AGGACAAGAATTTCCACGCT+TGG | 0.506092 | 1_1:+63437876 | None:intergenic |
| TCGTTCTGGGGATTTCCAAT+GGG | 0.509999 | 1_1:-63433115 | Msa0035300:CDS |
| CTAGCTTCAACTTCTACTGA+TGG | 0.515435 | 1_1:-63435502 | Msa0035300:CDS |
| GATGGATCTAAATTTGCTGC+TGG | 0.516767 | 1_1:-63436014 | Msa0035300:CDS |
| ATTGATCATCAAATGATTGA+GGG | 0.517917 | 1_1:+63433047 | None:intergenic |
| TGCAGAGTGGCAGATATACT+TGG | 0.519271 | 1_1:-63433200 | Msa0035300:intron |
| TCCAAAATTATGCGCATGCT+AGG | 0.524567 | 1_1:+63435841 | None:intergenic |
| ACTAAAAGTAATACATGTCT+GGG | 0.525288 | 1_1:+63436040 | None:intergenic |
| AGAAGCTGAGGAAGGTGATC+CGG | 0.530482 | 1_1:-63436916 | Msa0035300:CDS |
| GAGAACTCTGATTCGTTCTG+GGG | 0.533273 | 1_1:-63433127 | Msa0035300:CDS |
| TGGATTTCTGTCCTAGTGAA+AGG | 0.533688 | 1_1:-63434025 | Msa0035300:intron |
| TCAACCTAGTTGTTCTTGGA+AGG | 0.537175 | 1_1:-63437900 | Msa0035300:CDS |
| TAATGGCCGTTAGCCACGAC+GGG | 0.539256 | 1_1:-63435025 | Msa0035300:CDS |
| AGACGCGGTCACATATCTAC+TGG | 0.544878 | 1_1:+63433019 | None:intergenic |
| ATTTGGATGGAGAATGATGC+TGG | 0.544930 | 1_1:-63437976 | Msa0035300:exon |
| GGCTGTTATGTAATCATGGA+TGG | 0.547222 | 1_1:-63432750 | Msa0035300:three_prime_UTR |
| TGGACCTTCCAAGAACAACT+AGG | 0.547578 | 1_1:+63437896 | None:intergenic |
| TGTACCTAAAATCCATATCC+CGG | 0.552105 | 1_1:+63435794 | None:intergenic |
| GATCTAAATTTGCTGCTGGT+GGG | 0.552966 | 1_1:-63436010 | Msa0035300:CDS |
| GTATTTCCCGTCGTGGCTAA+CGG | 0.556419 | 1_1:+63435019 | None:intergenic |
| TCTATGTGTTGTTGTTCGAT+TGG | 0.557849 | 1_1:-63432999 | Msa0035300:three_prime_UTR |
| TTGAGGCTGTTATGTAATCA+TGG | 0.570101 | 1_1:-63432754 | Msa0035300:three_prime_UTR |
| TAGAAAGTCTGCTTCAGTAA+TGG | 0.572648 | 1_1:-63435042 | Msa0035300:CDS |
| GGAACAAAATAGGGCACAAG+AGG | 0.574914 | 1_1:-63435070 | Msa0035300:CDS |
| AGAAACGGTTATAGGGTCAA+AGG | 0.575993 | 1_1:+63437834 | None:intergenic |
| GTGGTATCAAAATTCAACTC+AGG | 0.578946 | 1_1:-63432955 | Msa0035300:three_prime_UTR |
| AAAAGCACACAAATCTGTCC+GGG | 0.581294 | 1_1:-63435812 | Msa0035300:CDS |
| CACATAAAATCATCACCGCT+AGG | 0.583548 | 1_1:+63436876 | None:intergenic |
| GACCACTCTGTCTCGCAACT+CGG | 0.583764 | 1_1:-63435440 | Msa0035300:intron |
| TAAATTTGCTGCTGGTGGGT+CGG | 0.586472 | 1_1:-63436006 | Msa0035300:intron |
| GTGGATATTTACCTTTCACT+AGG | 0.590688 | 1_1:+63434014 | None:intergenic |
| ATCCGAAGAGGAAAGAGAGA+GGG | 0.593233 | 1_1:+63438126 | None:intergenic |
| GTAGTATCAGTAGCTGTAAG+TGG | 0.593314 | 1_1:-63432974 | Msa0035300:three_prime_UTR |
| GGGAACCAATACCCTGTAGA+GGG | 0.595092 | 1_1:+63436060 | None:intergenic |
| AAATTTGCAAGTTGAGCTTG+AGG | 0.604263 | 1_1:-63432771 | Msa0035300:three_prime_UTR |
| AGGGGATAAGTCTCTTACAG+CGG | 0.605985 | 1_1:-63435111 | Msa0035300:CDS |
| TTTATGTGCTCTTTGAGCAA+TGG | 0.610268 | 1_1:-63436861 | Msa0035300:CDS |
| TTGCGAGACAGAGTGGTCAC+AGG | 0.610478 | 1_1:+63435445 | None:intergenic |
| AGGGGAAGTAGACAAAGAAA+CGG | 0.613448 | 1_1:+63437819 | None:intergenic |
| AATGTACCTAAAGATTGGAA+AGG | 0.615590 | 1_1:-63433768 | Msa0035300:intron |
| ACATAAAATCATCACCGCTA+GGG | 0.616388 | 1_1:+63436877 | None:intergenic |
| TATCCGAAGAGGAAAGAGAG+AGG | 0.616703 | 1_1:+63438125 | None:intergenic |
| TTATATAGAAATATCCGAAG+AGG | 0.619452 | 1_1:+63438114 | None:intergenic |
| TGGGAACCAATACCCTGTAG+AGG | 0.620085 | 1_1:+63436059 | None:intergenic |
| TTTGTGTTAGAAGCTGAGGA+AGG | 0.624346 | 1_1:-63436924 | Msa0035300:CDS |
| GTAATGGCCGTTAGCCACGA+CGG | 0.633207 | 1_1:-63435026 | Msa0035300:CDS |
| TTTACGACTTAAGACATTTG+GGG | 0.637607 | 1_1:-63432726 | Msa0035300:three_prime_UTR |
| AGAATCTGGAAGGTTGAAGA+CGG | 0.646935 | 1_1:-63435472 | Msa0035300:CDS |
| GAGAAAGGTATTTCCCGTCG+TGG | 0.646943 | 1_1:+63435012 | None:intergenic |
| AAACATGAAACTGTTGCCCA+AGG | 0.647320 | 1_1:-63436090 | Msa0035300:CDS |
| GTTCTTGGAAGGTCCAAGCG+TGG | 0.648572 | 1_1:-63437889 | Msa0035300:CDS |
| AAAATCAACCAGCTAGACCA+AGG | 0.649835 | 1_1:-63433090 | Msa0035300:CDS |
| CAATGCTCCCCATTCTACTG+AGG | 0.662088 | 1_1:+63433803 | None:intergenic |
| TAGGCCACTCCATAATTCTG+AGG | 0.667952 | 1_1:+63435860 | None:intergenic |
| TGGTTCAGCGAGAATCTGGA+AGG | 0.668492 | 1_1:-63435482 | Msa0035300:CDS |
| TACCGAGTTGCGAGACAGAG+TGG | 0.677017 | 1_1:+63435438 | None:intergenic |
| AAGGAACTAACCCCTCTACA+GGG | 0.679695 | 1_1:-63436071 | Msa0035300:CDS |
| GACACCTCAGAATTATGGAG+TGG | 0.680012 | 1_1:-63435864 | Msa0035300:CDS |
| AATGATGCTGGATCACCTCA+GGG | 0.681405 | 1_1:-63437964 | Msa0035300:CDS |
| CCGCAAGTAACCGGACCCTG+AGG | 0.684658 | 1_1:+63437949 | None:intergenic |
| GGAACCAATACCCTGTAGAG+GGG | 0.704785 | 1_1:+63436061 | None:intergenic |
| GCTATTGCTGTGCACCCTAG+CGG | 0.708254 | 1_1:-63436891 | Msa0035300:CDS |
| CAATCATTTGATGATCAATG+GGG | 0.709097 | 1_1:-63433043 | Msa0035300:CDS |
| CTTACAACCTCAGTAGAATG+GGG | 0.712274 | 1_1:-63433810 | Msa0035300:CDS |
| ATTGAAGAGGAATACCAAAG+GGG | 0.723778 | 1_1:+63437801 | None:intergenic |
| ATGTTGCGATAGTTGTACCG+AGG | 0.735547 | 1_1:+63434048 | None:intergenic |
| CGAACAACAACACATAGACG+CGG | 0.749005 | 1_1:+63433004 | None:intergenic |
| TATAGCAAGAGACTACACCT+CGG | 0.778640 | 1_1:-63434065 | Msa0035300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATTAATTTTTATAT+TGG | + | chr1_1:63434455-63434474 | None:intergenic | 0.0% |
| !! | TTCTAAACTTAAAATAAAAA+GGG | + | chr1_1:63433177-63433196 | None:intergenic | 10.0% |
| !! | TTTCTAAACTTAAAATAAAA+AGG | + | chr1_1:63433178-63433197 | None:intergenic | 10.0% |
| !! | TATAAGTATTTATGCTATAA+GGG | + | chr1_1:63433284-63433303 | None:intergenic | 15.0% |
| !! | ATATAAGTATTTATGCTATA+AGG | + | chr1_1:63433285-63433304 | None:intergenic | 15.0% |
| !!! | TTTTTTCAAAAATGATATTG+AGG | - | chr1_1:63434493-63434512 | Msa0035300:intron | 15.0% |
| !!! | TTTTTCAAAAATGATATTGA+GGG | - | chr1_1:63434494-63434513 | Msa0035300:intron | 15.0% |
| !!! | AAAAGAAAATTTTGGATAAA+GGG | + | chr1_1:63435554-63435573 | None:intergenic | 15.0% |
| !!! | AAAAAGAAAATTTTGGATAA+AGG | + | chr1_1:63435555-63435574 | None:intergenic | 15.0% |
| !! | TTAAACATATTTAAGTCATT+TGG | - | chr1_1:63435934-63435953 | Msa0035300:intron | 15.0% |
| !!! | TTTATGTGAGTTTTTTAAAA+AGG | - | chr1_1:63436247-63436266 | Msa0035300:intron | 15.0% |
| !!! | ATTAGTCCAATTATTTTAAA+AGG | - | chr1_1:63436667-63436686 | Msa0035300:intron | 15.0% |
| !!! | AGTTTACCTTTTAAAATAAT+TGG | + | chr1_1:63436676-63436695 | None:intergenic | 15.0% |
| !! | ATGATTGATATTAATCAAAA+AGG | + | chr1_1:63436901-63436920 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGTTATATTCTA+TGG | + | chr1_1:63437203-63437222 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAACACAAATTG+TGG | + | chr1_1:63437436-63437455 | None:intergenic | 15.0% |
| !! | TGAAATATGAATTCAAAGTT+CGG | + | chr1_1:63432875-63432894 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTTCTGAGAATT+TGG | - | chr1_1:63432889-63432908 | Msa0035300:three_prime_UTR | 20.0% |
| !! | AAACTATATGTATATGTATG+TGG | - | chr1_1:63433108-63433127 | Msa0035300:CDS | 20.0% |
| !! | AACTATATGTATATGTATGT+GGG | - | chr1_1:63433109-63433128 | Msa0035300:CDS | 20.0% |
| !!! | TAAACTTTTGTGAGATTATT+AGG | + | chr1_1:63433559-63433578 | None:intergenic | 20.0% |
| !!! | ATTGTCCTTTAAAAAGTTAA+AGG | + | chr1_1:63434220-63434239 | None:intergenic | 20.0% |
| !! | AAAAACTGTGCAAAAAAATT+TGG | + | chr1_1:63434266-63434285 | None:intergenic | 20.0% |
| !! | CAAATTGAATTTGAATTGTT+TGG | - | chr1_1:63434404-63434423 | Msa0035300:intron | 20.0% |
| !!! | ATTAGAATTTAGAATTCTAC+TGG | + | chr1_1:63435169-63435188 | None:intergenic | 20.0% |
| !!! | GGTATAGTCTTTTTTATTTA+AGG | - | chr1_1:63435463-63435482 | Msa0035300:CDS | 20.0% |
| !!! | AAAGAAAATTTTGGATAAAG+GGG | + | chr1_1:63435553-63435572 | None:intergenic | 20.0% |
| !!! | AAGAGACAAAAAGAAAATTT+TGG | + | chr1_1:63435562-63435581 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTTGTCTCTTT+AGG | - | chr1_1:63435563-63435582 | Msa0035300:intron | 20.0% |
| !! | AAAACTATAATTGTAAGGAA+AGG | + | chr1_1:63436184-63436203 | None:intergenic | 20.0% |
| !!! | TTTCCTTACAATTATAGTTT+TGG | - | chr1_1:63436183-63436202 | Msa0035300:intron | 20.0% |
| !! | ATTCCAAAACTATAATTGTA+AGG | + | chr1_1:63436189-63436208 | None:intergenic | 20.0% |
| !!! | TAGTTTTGGAATTGTTTATA+AGG | - | chr1_1:63436197-63436216 | Msa0035300:intron | 20.0% |
| !!! | TTTTCATGAAATATTTGAGA+AGG | - | chr1_1:63436300-63436319 | Msa0035300:intron | 20.0% |
| !! | TTTCATGAAATATTTGAGAA+GGG | - | chr1_1:63436301-63436320 | Msa0035300:intron | 20.0% |
| !!! | CATAGTTTTGTAAATATTAG+TGG | - | chr1_1:63436620-63436639 | Msa0035300:intron | 20.0% |
| !! | TAAAAGTTTAAAAAATGCAG+TGG | - | chr1_1:63436961-63436980 | Msa0035300:intron | 20.0% |
| !!! | AGCTTTTATTATTTTATGCA+GGG | - | chr1_1:63437044-63437063 | Msa0035300:intron | 20.0% |
| !! | AACAAAAATCAACATCAATT+CGG | - | chr1_1:63437241-63437260 | Msa0035300:intron | 20.0% |
| !! | AACAAATTTCGAAAACAATA+TGG | + | chr1_1:63437586-63437605 | None:intergenic | 20.0% |
| !!! | AAATTTTCAGCAAAAAGAAA+AGG | + | chr1_1:63438020-63438039 | None:intergenic | 20.0% |
| !! | TCAATTACATATCACAATAA+TGG | + | chr1_1:63438056-63438075 | None:intergenic | 20.0% |
| ! | TTATATAGAAATATCCGAAG+AGG | + | chr1_1:63432771-63432790 | None:intergenic | 25.0% |
| ! | ATATAGTTTGAGAATTGAAG+AGG | + | chr1_1:63433097-63433116 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr1_1:63433256-63433275 | None:intergenic | 25.0% |
| ! | TAAGCATTTGTGAGATTATT+AGG | + | chr1_1:63433443-63433462 | None:intergenic | 25.0% |
| ! | TATTTAAGCTATAAGCTGTA+AGG | - | chr1_1:63433585-63433604 | Msa0035300:intron | 25.0% |
| ! | TAAACATTCGTGAGATTATT+AGG | + | chr1_1:63433670-63433689 | None:intergenic | 25.0% |
| !!! | TGGTTTTAATCTTGAGTTTT+TGG | - | chr1_1:63433863-63433882 | Msa0035300:intron | 25.0% |
| ! | ATTATTCATAAAAGAGAGCA+AGG | + | chr1_1:63434090-63434109 | None:intergenic | 25.0% |
| ! | AAAGCTACTACTTTAAGTAA+CGG | - | chr1_1:63434166-63434185 | Msa0035300:intron | 25.0% |
| !!! | CTGTTCCTTTAACTTTTTAA+AGG | - | chr1_1:63434212-63434231 | Msa0035300:intron | 25.0% |
| !! | GTGTATGACATAATAGTTTT+AGG | - | chr1_1:63434312-63434331 | Msa0035300:intron | 25.0% |
| ! | CTACTCTTAAGAAATAAGTA+CGG | + | chr1_1:63434683-63434702 | None:intergenic | 25.0% |
| ! | ACTAAAAGTAATACATGTCT+GGG | + | chr1_1:63434845-63434864 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTAGTGTTGA+TGG | - | chr1_1:63434850-63434869 | Msa0035300:intron | 25.0% |
| ! | ACAGCATAAAAACAATTTGT+TGG | + | chr1_1:63434920-63434939 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTAAGGACCTT+TGG | - | chr1_1:63435471-63435490 | Msa0035300:CDS | 25.0% |
| ! | TAATCATGATTAAGTCATCT+AGG | - | chr1_1:63436023-63436042 | Msa0035300:CDS | 25.0% |
| !!! | AAAATGATTTGGTAATCTCT+AGG | + | chr1_1:63436050-63436069 | None:intergenic | 25.0% |
| ! | TTGAGCAAAAGAAAATGATT+TGG | + | chr1_1:63436061-63436080 | None:intergenic | 25.0% |
| ! | AATTAGAAATGAGCATCATA+AGG | + | chr1_1:63436125-63436144 | None:intergenic | 25.0% |
| !!! | GAGAAAGTTATAGCTATTTT+AGG | - | chr1_1:63436277-63436296 | Msa0035300:intron | 25.0% |
| !! | TGGATTTGAACAAATACTTT+TGG | - | chr1_1:63436413-63436432 | Msa0035300:intron | 25.0% |
| !! | ATCAGATCTCTGTAATTTTA+GGG | - | chr1_1:63436738-63436757 | Msa0035300:intron | 25.0% |
| ! | GCATAAAATAATAAAAGCTC+AGG | + | chr1_1:63437043-63437062 | None:intergenic | 25.0% |
| !!! | GAGCTTTTATTATTTTATGC+AGG | - | chr1_1:63437043-63437062 | Msa0035300:intron | 25.0% |
| ! | AATGGTTAATGAATATGACA+TGG | - | chr1_1:63437310-63437329 | Msa0035300:intron | 25.0% |
| !!! | ATCATGTTTATTTTATCACG+TGG | + | chr1_1:63437404-63437423 | None:intergenic | 25.0% |
| ! | GATGGTTAATGAATATAACA+AGG | + | chr1_1:63437523-63437542 | None:intergenic | 25.0% |
| ! | AATTTCGAAAACAATATGGA+TGG | + | chr1_1:63437582-63437601 | None:intergenic | 25.0% |
| ! | ATTGATCATCAAATGATTGA+GGG | + | chr1_1:63437838-63437857 | None:intergenic | 25.0% |
| !! | TCAATCATTTGATGATCAAT+GGG | - | chr1_1:63437838-63437857 | Msa0035300:CDS | 25.0% |
| !! | CTGAAAATTTTAAACCCAAA+AGG | - | chr1_1:63438030-63438049 | Msa0035300:five_prime_UTR | 25.0% |
| ! | ATTTACGACTTAAGACATTT+GGG | - | chr1_1:63438155-63438174 | Msa0035300:five_prime_UTR | 25.0% |
| ! | CAAATTTCTGAGAATTTGGA+TGG | - | chr1_1:63432893-63432912 | Msa0035300:three_prime_UTR | 30.0% |
| !! | AACAACTAGGTTGAGATTTT+CGG | + | chr1_1:63432976-63432995 | None:intergenic | 30.0% |
| TAGACAAAGAAACGGTTATA+GGG | + | chr1_1:63433058-63433077 | None:intergenic | 30.0% | |
| AATTGAAGAGGAATACCAAA+GGG | + | chr1_1:63433085-63433104 | None:intergenic | 30.0% | |
| TTGCAGTTGTATATAGACTA+TGG | - | chr1_1:63433230-63433249 | Msa0035300:intron | 30.0% | |
| TATGCCTGTATATAACCTAT+AGG | - | chr1_1:63433461-63433480 | Msa0035300:intron | 30.0% | |
| TCACGAATGTTTATACAAGT+AGG | - | chr1_1:63433677-63433696 | Msa0035300:intron | 30.0% | |
| !! | TTATTTTGTGCATTCCCTTT+TGG | - | chr1_1:63433760-63433779 | Msa0035300:intron | 30.0% |
| TTTCTCAGCTAAAACCAAAA+GGG | + | chr1_1:63433777-63433796 | None:intergenic | 30.0% | |
| ATTTCTCAGCTAAAACCAAA+AGG | + | chr1_1:63433778-63433797 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGAACAAGATTGT+TGG | - | chr1_1:63433801-63433820 | Msa0035300:CDS | 30.0% |
| !! | ATAATTCTGCTTTTGAAGAG+TGG | - | chr1_1:63433843-63433862 | Msa0035300:intron | 30.0% |
| !! | GAGTTTTTGGATCATGTAAT+TGG | - | chr1_1:63433876-63433895 | Msa0035300:intron | 30.0% |
| GTTAAAGGAACAGAAAATGT+TGG | + | chr1_1:63434205-63434224 | None:intergenic | 30.0% | |
| !!! | TAATAGTTTTAGGCTCAGTT+TGG | - | chr1_1:63434322-63434341 | Msa0035300:intron | 30.0% |
| TGAAGTAGAACTGTTAGTAA+CGG | + | chr1_1:63434608-63434627 | None:intergenic | 30.0% | |
| GCTTATATGTTATAAGCTTG+CGG | - | chr1_1:63434637-63434656 | Msa0035300:intron | 30.0% | |
| CACTAAAAGTAATACATGTC+TGG | + | chr1_1:63434846-63434865 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTTATGCTGTGTG+TGG | - | chr1_1:63434923-63434942 | Msa0035300:intron | 30.0% |
| AAGACAGAAGTAAAACATAC+AGG | + | chr1_1:63434982-63435001 | None:intergenic | 30.0% | |
| ! | AGATGAATGCATCTTTTAGA+AGG | + | chr1_1:63435140-63435159 | None:intergenic | 30.0% |
| TGACAAAACGAAAGACAATA+CGG | + | chr1_1:63435336-63435355 | None:intergenic | 30.0% | |
| TTTATTTAAGGACCTTTGGA+AGG | - | chr1_1:63435475-63435494 | Msa0035300:CDS | 30.0% | |
| !!! | TGAATTATGTCGATTTTCCA+AGG | - | chr1_1:63435596-63435615 | Msa0035300:intron | 30.0% |
| ! | GATACTCATACCTTTTTGAA+CGG | + | chr1_1:63435649-63435668 | None:intergenic | 30.0% |
| TCAAGTATGACCTTAATCAT+TGG | - | chr1_1:63435731-63435750 | Msa0035300:intron | 30.0% | |
| !! | ATTAGAGGTACCAATGATTA+AGG | + | chr1_1:63435744-63435763 | None:intergenic | 30.0% |
| !!! | TGGTACCTCTAATTTTGATT+AGG | - | chr1_1:63435751-63435770 | Msa0035300:intron | 30.0% |
| !!! | GGTACCTCTAATTTTGATTA+GGG | - | chr1_1:63435752-63435771 | Msa0035300:intron | 30.0% |
| !!! | GTACCTCTAATTTTGATTAG+GGG | - | chr1_1:63435753-63435772 | Msa0035300:intron | 30.0% |
| TATCCCCTAATCAAAATTAG+AGG | + | chr1_1:63435759-63435778 | None:intergenic | 30.0% | |
| ATGAGTTCATGGAACAAAAT+AGG | - | chr1_1:63435802-63435821 | Msa0035300:CDS | 30.0% | |
| TGAGTTCATGGAACAAAATA+GGG | - | chr1_1:63435803-63435822 | Msa0035300:CDS | 30.0% | |
| ATATAGGTTCTTACAGAGAA+AGG | + | chr1_1:63435888-63435907 | None:intergenic | 30.0% | |
| GATATGTGCAAGGTAAATAT+AGG | + | chr1_1:63435904-63435923 | None:intergenic | 30.0% | |
| CAAAACAATTGATATGTGCA+AGG | + | chr1_1:63435914-63435933 | None:intergenic | 30.0% | |
| TTTAAGTCATTTGGATAGCA+AGG | - | chr1_1:63435943-63435962 | Msa0035300:intron | 30.0% | |
| TTTGTCATATCTCAGAACTA+AGG | - | chr1_1:63436362-63436381 | Msa0035300:intron | 30.0% | |
| AGGATTTATGTTCGAATTGA+CGG | + | chr1_1:63436580-63436599 | None:intergenic | 30.0% | |
| TTGACTATAACGATTCTGAA+AGG | + | chr1_1:63436600-63436619 | None:intergenic | 30.0% | |
| ! | CTAATTTTATCTGTGATGCA+CGG | + | chr1_1:63436652-63436671 | None:intergenic | 30.0% |
| ! | CATCAGATCTCTGTAATTTT+AGG | - | chr1_1:63436737-63436756 | Msa0035300:intron | 30.0% |
| !!! | AATTTTAGGGCAAGTAAAGA+TGG | - | chr1_1:63436751-63436770 | Msa0035300:intron | 30.0% |
| ! | ATCATTCATGAACACACTTT+TGG | - | chr1_1:63436916-63436935 | Msa0035300:CDS | 30.0% |
| ! | TCATTCATGAACACACTTTT+GGG | - | chr1_1:63436917-63436936 | Msa0035300:CDS | 30.0% |
| GGCCTAAAATTTCAATCTAT+TGG | - | chr1_1:63436982-63437001 | Msa0035300:intron | 30.0% | |
| ! | GGCCAATAGATTGAAATTTT+AGG | + | chr1_1:63436987-63437006 | None:intergenic | 30.0% |
| ! | ACTAAGAGAACTGGTTTATT+AGG | + | chr1_1:63437008-63437027 | None:intergenic | 30.0% |
| AACTGAATGTACCTAAAGAT+TGG | - | chr1_1:63437109-63437128 | Msa0035300:intron | 30.0% | |
| AATGTACCTAAAGATTGGAA+AGG | - | chr1_1:63437114-63437133 | Msa0035300:intron | 30.0% | |
| AGATAACCTTTCCAATCTTT+AGG | + | chr1_1:63437123-63437142 | None:intergenic | 30.0% | |
| ! | ACGATTGTGAATGTGTTTTA+TGG | + | chr1_1:63437169-63437188 | None:intergenic | 30.0% |
| TATATTCTATGGTCTCAGAA+AGG | + | chr1_1:63437192-63437211 | None:intergenic | 30.0% | |
| AAAATCAACATCAATTCGGA+TGG | - | chr1_1:63437245-63437264 | Msa0035300:intron | 30.0% | |
| GTTAATGTCGTTCAAATATG+TGG | - | chr1_1:63437271-63437290 | Msa0035300:intron | 30.0% | |
| TAAACACAAATTGTGGTCAA+TGG | + | chr1_1:63437429-63437448 | None:intergenic | 30.0% | |
| AATGAACACCTGAAAAATCA+TGG | - | chr1_1:63437455-63437474 | Msa0035300:intron | 30.0% | |
| GTGTGGTTAATTACATTTAG+CGG | - | chr1_1:63437477-63437496 | Msa0035300:intron | 30.0% | |
| ! | TTTAGCGGATGATTAATGAT+TGG | - | chr1_1:63437492-63437511 | Msa0035300:intron | 30.0% |
| !!! | AGATATACTTGGTGCTTTTA+GGG | - | chr1_1:63437693-63437712 | Msa0035300:intron | 30.0% |
| !!! | TTTAGGGCTATTTTTAGTGT+CGG | - | chr1_1:63437709-63437728 | Msa0035300:intron | 30.0% |
| CATTGATCATCAAATGATTG+AGG | + | chr1_1:63437839-63437858 | None:intergenic | 30.0% | |
| ! | CTCAATCATTTGATGATCAA+TGG | - | chr1_1:63437837-63437856 | Msa0035300:CDS | 30.0% |
| ! | CAATCATTTGATGATCAATG+GGG | - | chr1_1:63437839-63437858 | Msa0035300:CDS | 30.0% |
| CTGTTTACACATGTAGAATT+AGG | - | chr1_1:63437957-63437976 | Msa0035300:CDS | 30.0% | |
| ! | TATCACAATAATGGCCTTTT+GGG | + | chr1_1:63438047-63438066 | None:intergenic | 30.0% |
| ! | ATATCACAATAATGGCCTTT+TGG | + | chr1_1:63438048-63438067 | None:intergenic | 30.0% |
| GATTTACGACTTAAGACATT+TGG | - | chr1_1:63438154-63438173 | Msa0035300:five_prime_UTR | 30.0% | |
| TTTACGACTTAAGACATTTG+GGG | - | chr1_1:63438156-63438175 | Msa0035300:five_prime_UTR | 30.0% | |
| !!! | GGGCATTTTTTTTTAGCTTA+TGG | - | chr1_1:63438176-63438195 | Msa0035300:five_prime_UTR | 30.0% |
| ! | AGTTCGGTTCTTTTTCCAAT+CGG | + | chr1_1:63432859-63432878 | None:intergenic | 35.0% |
| !! | ACAACTAGGTTGAGATTTTC+GGG | + | chr1_1:63432975-63432994 | None:intergenic | 35.0% |
| AATCTCAACCTAGTTGTTCT+TGG | - | chr1_1:63432978-63432997 | Msa0035300:three_prime_UTR | 35.0% | |
| GTAGACAAAGAAACGGTTAT+AGG | + | chr1_1:63433059-63433078 | None:intergenic | 35.0% | |
| ATTGAAGAGGAATACCAAAG+GGG | + | chr1_1:63433084-63433103 | None:intergenic | 35.0% | |
| GAATTGAAGAGGAATACCAA+AGG | + | chr1_1:63433086-63433105 | None:intergenic | 35.0% | |
| ATATAGACTATGGCCATGTT+TGG | - | chr1_1:63433240-63433259 | Msa0035300:intron | 35.0% | |
| ACAGTTTATGAACATGCCAT+AGG | - | chr1_1:63433413-63433432 | Msa0035300:intron | 35.0% | |
| ACAGCCTATAGGTTATATAC+AGG | + | chr1_1:63433468-63433487 | None:intergenic | 35.0% | |
| TAGCTTATGATACAGCCTAT+AGG | + | chr1_1:63433479-63433498 | None:intergenic | 35.0% | |
| ! | CTATAAGCTGTAAGGTATTC+TGG | - | chr1_1:63433593-63433612 | Msa0035300:intron | 35.0% |
| ! | TGTTTGGATCGACTTATTTC+AGG | + | chr1_1:63433706-63433725 | None:intergenic | 35.0% |
| TGAAATAAGTCGATCCAAAC+AGG | - | chr1_1:63433705-63433724 | Msa0035300:intron | 35.0% | |
| CTCAGCTTCTAACACAAAAT+TGG | + | chr1_1:63433956-63433975 | None:intergenic | 35.0% | |
| ! | CAATTTTGTGTTAGAAGCTG+AGG | - | chr1_1:63433954-63433973 | Msa0035300:intron | 35.0% |
| ACATAAAATCATCACCGCTA+GGG | + | chr1_1:63434008-63434027 | None:intergenic | 35.0% | |
| TTTATGTGCTCTTTGAGCAA+TGG | - | chr1_1:63434021-63434040 | Msa0035300:intron | 35.0% | |
| ! | AGCTTCTTTTCTAATAGCCA+TGG | - | chr1_1:63434056-63434075 | Msa0035300:CDS | 35.0% |
| ! | GCTTCTTTTCTAATAGCCAT+GGG | - | chr1_1:63434057-63434076 | Msa0035300:CDS | 35.0% |
| ! | TGTTCTTATTTCCTTGAGCT+AGG | - | chr1_1:63434286-63434305 | Msa0035300:intron | 35.0% |
| TATGTTATAAGCTTGCGGTT+TGG | - | chr1_1:63434642-63434661 | Msa0035300:intron | 35.0% | |
| ! | ATATTTTGCCTCGAGTTCTA+TGG | - | chr1_1:63434710-63434729 | Msa0035300:intron | 35.0% |
| AATCTAAACCATAGAACTCG+AGG | + | chr1_1:63434721-63434740 | None:intergenic | 35.0% | |
| TGTACCTAAAATCCATATCC+CGG | + | chr1_1:63435091-63435110 | None:intergenic | 35.0% | |
| TAGTCTAATTATTGCAGGCA+CGG | + | chr1_1:63435228-63435247 | None:intergenic | 35.0% | |
| TGCCTGCAATAATTAGACTA+AGG | - | chr1_1:63435228-63435247 | Msa0035300:intron | 35.0% | |
| CTCCTTAGTCTAATTATTGC+AGG | + | chr1_1:63435233-63435252 | None:intergenic | 35.0% | |
| AAATCTTCAGATCCTTCCAA+AGG | + | chr1_1:63435490-63435509 | None:intergenic | 35.0% | |
| !!! | TTATGTCGATTTTCCAAGGA+TGG | - | chr1_1:63435600-63435619 | Msa0035300:intron | 35.0% |
| GGAACCAAACCATTTCTATT+TGG | - | chr1_1:63435621-63435640 | Msa0035300:intron | 35.0% | |
| TAGAAAGTCTGCTTCAGTAA+TGG | - | chr1_1:63435840-63435859 | Msa0035300:CDS | 35.0% | |
| TTGTATTGCCAAAACTGTGA+AGG | - | chr1_1:63435976-63435995 | Msa0035300:intron | 35.0% | |
| TGTATTGCCAAAACTGTGAA+GGG | - | chr1_1:63435977-63435996 | Msa0035300:intron | 35.0% | |
| AGATATGACAAACATGGCAT+GGG | + | chr1_1:63436354-63436373 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATATGACAAACA+TGG | + | chr1_1:63436360-63436379 | None:intergenic | 35.0% |
| ! | AGAACTAAGGCTTCTCTTTT+GGG | - | chr1_1:63436375-63436394 | Msa0035300:intron | 35.0% |
| TTGGGCTGTTCAATTTGATA+TGG | - | chr1_1:63436393-63436412 | Msa0035300:intron | 35.0% | |
| AGCTCAAGATTATACAAGCA+AGG | + | chr1_1:63436717-63436736 | None:intergenic | 35.0% | |
| GTGGATATTTACCTTTCACT+AGG | + | chr1_1:63436871-63436890 | None:intergenic | 35.0% | |
| TGAAAGGTAAATATCCACAC+TGG | - | chr1_1:63436873-63436892 | Msa0035300:CDS | 35.0% | |
| !! | TAATCAAAAAGGTACCAGTG+TGG | + | chr1_1:63436890-63436909 | None:intergenic | 35.0% |
| ! | CATTCATGAACACACTTTTG+GGG | - | chr1_1:63436918-63436937 | Msa0035300:CDS | 35.0% |
| TAAACCAGTTCTCTTAGTCT+TGG | - | chr1_1:63437010-63437029 | Msa0035300:intron | 35.0% | |
| TACTTACAACCTCAGTAGAA+TGG | - | chr1_1:63437070-63437089 | Msa0035300:intron | 35.0% | |
| ACTTACAACCTCAGTAGAAT+GGG | - | chr1_1:63437071-63437090 | Msa0035300:intron | 35.0% | |
| ! | ATTTTATCACGTGGAGATGA+CGG | + | chr1_1:63437395-63437414 | None:intergenic | 35.0% |
| ! | TAACCACACCATGATTTTTC+AGG | + | chr1_1:63437466-63437485 | None:intergenic | 35.0% |
| ! | ATGTGGTTAGTTACGTTTCA+TGG | + | chr1_1:63437545-63437564 | None:intergenic | 35.0% |
| ! | TGGTTGGTGCAATTTAAATG+TGG | + | chr1_1:63437562-63437581 | None:intergenic | 35.0% |
| TCGAAAACAATATGGATGGT+TGG | + | chr1_1:63437578-63437597 | None:intergenic | 35.0% | |
| !!! | CAGATATACTTGGTGCTTTT+AGG | - | chr1_1:63437692-63437711 | Msa0035300:intron | 35.0% |
| !! | CTCATCATTGGTTTAAACCT+TGG | + | chr1_1:63437812-63437831 | None:intergenic | 35.0% |
| ! | TCTATGTGTTGTTGTTCGAT+TGG | - | chr1_1:63437883-63437902 | Msa0035300:CDS | 35.0% |
| GTGGTATCAAAATTCAACTC+AGG | - | chr1_1:63437927-63437946 | Msa0035300:CDS | 35.0% | |
| ! | AAATTTGCAAGTTGAGCTTG+AGG | - | chr1_1:63438111-63438130 | Msa0035300:five_prime_UTR | 35.0% |
| TTGAGGCTGTTATGTAATCA+TGG | - | chr1_1:63438128-63438147 | Msa0035300:five_prime_UTR | 35.0% | |
| ! | GCAAGTTGTTTGTTGGATAG+TGG | + | chr1_1:63432727-63432746 | None:intergenic | 40.0% |
| AATGAGCGCAAGTTGTTTGT+TGG | + | chr1_1:63432734-63432753 | None:intergenic | 40.0% | |
| ! | TTGATTTTCAGTGACCCGAT+TGG | - | chr1_1:63432841-63432860 | Msa0035300:three_prime_UTR | 40.0% |
| ! | GTTCGGTTCTTTTTCCAATC+GGG | + | chr1_1:63432858-63432877 | None:intergenic | 40.0% |
| ATTTGGATGGAGAATGATGC+TGG | - | chr1_1:63432906-63432925 | Msa0035300:three_prime_UTR | 40.0% | |
| TCAACCTAGTTGTTCTTGGA+AGG | - | chr1_1:63432982-63433001 | Msa0035300:three_prime_UTR | 40.0% | |
| ! | GAGAAAATCTGAAGCAAAGC+AGG | + | chr1_1:63433029-63433048 | None:intergenic | 40.0% |
| AGAAACGGTTATAGGGTCAA+AGG | + | chr1_1:63433051-63433070 | None:intergenic | 40.0% | |
| AGGGGAAGTAGACAAAGAAA+CGG | + | chr1_1:63433066-63433085 | None:intergenic | 40.0% | |
| TTCTTTGTCTACTTCCCCTT+TGG | - | chr1_1:63433067-63433086 | Msa0035300:CDS | 40.0% | |
| GAGATTATTAGGAGAGCCTA+TGG | + | chr1_1:63433432-63433451 | None:intergenic | 40.0% | |
| GGCTGTATCATAAGCTATTC+TGG | - | chr1_1:63433482-63433501 | Msa0035300:intron | 40.0% | |
| GCATATGCATCACTCTACAT+AGG | + | chr1_1:63433732-63433751 | None:intergenic | 40.0% | |
| TTCCTGAACAAGATTGTTGG+TGG | - | chr1_1:63433804-63433823 | Msa0035300:CDS | 40.0% | |
| TTCCACCAACAATCTTGTTC+AGG | + | chr1_1:63433809-63433828 | None:intergenic | 40.0% | |
| GGATCATGTAATTGGAAGTG+TGG | - | chr1_1:63433884-63433903 | Msa0035300:intron | 40.0% | |
| TTTGTGTTAGAAGCTGAGGA+AGG | - | chr1_1:63433958-63433977 | Msa0035300:intron | 40.0% | |
| CACATAAAATCATCACCGCT+AGG | + | chr1_1:63434009-63434028 | None:intergenic | 40.0% | |
| CTACTACTTTAAGTAACGGC+AGG | - | chr1_1:63434170-63434189 | Msa0035300:intron | 40.0% | |
| ATTTGGTACAACTGAGCATG+CGG | + | chr1_1:63434249-63434268 | None:intergenic | 40.0% | |
| GTAGATGACTGATAAGCTAG+CGG | - | chr1_1:63434354-63434373 | Msa0035300:intron | 40.0% | |
| TGCAGATTGTTTGAGCTCTA+TGG | - | chr1_1:63434760-63434779 | Msa0035300:intron | 40.0% | |
| AAACATGAAACTGTTGCCCA+AGG | - | chr1_1:63434792-63434811 | Msa0035300:intron | 40.0% | |
| !! | GATGGATCTAAATTTGCTGC+TGG | - | chr1_1:63434868-63434887 | Msa0035300:intron | 40.0% |
| !! | GATCTAAATTTGCTGCTGGT+GGG | - | chr1_1:63434872-63434891 | Msa0035300:intron | 40.0% |
| CTTCTGTCTTTAACACGTGT+AGG | - | chr1_1:63434992-63435011 | Msa0035300:intron | 40.0% | |
| TGTCTTTAACACGTGTAGGA+TGG | - | chr1_1:63434996-63435015 | Msa0035300:intron | 40.0% | |
| TCCAAAATTATGCGCATGCT+AGG | + | chr1_1:63435044-63435063 | None:intergenic | 40.0% | |
| ! | CAAAAGCACACAAATCTGTC+CGG | - | chr1_1:63435069-63435088 | Msa0035300:CDS | 40.0% |
| ! | AAAAGCACACAAATCTGTCC+GGG | - | chr1_1:63435070-63435089 | Msa0035300:CDS | 40.0% |
| CAATGTCATCAAGGTTTCAC+AGG | + | chr1_1:63435306-63435325 | None:intergenic | 40.0% | |
| GGTCAGTATCAATGTCATCA+AGG | + | chr1_1:63435315-63435334 | None:intergenic | 40.0% | |
| CTAGCTTCAACTTCTACTGA+TGG | - | chr1_1:63435380-63435399 | Msa0035300:intron | 40.0% | |
| AGAATCTGGAAGGTTGAAGA+CGG | - | chr1_1:63435410-63435429 | Msa0035300:intron | 40.0% | |
| !! | AAATGGTTTGGTTCCATCCT+TGG | + | chr1_1:63435616-63435635 | None:intergenic | 40.0% |
| ATAAGTCTCTTACAGCGGTT+TGG | - | chr1_1:63435776-63435795 | Msa0035300:intron | 40.0% | |
| TAAGTCTCTTACAGCGGTTT+GGG | - | chr1_1:63435777-63435796 | Msa0035300:intron | 40.0% | |
| AAGTCATTTGGATAGCAAGG+TGG | - | chr1_1:63435946-63435965 | Msa0035300:intron | 40.0% | |
| ! | TTCTTCACCCTTCACAGTTT+TGG | + | chr1_1:63435987-63436006 | None:intergenic | 40.0% |
| GAGATATGACAAACATGGCA+TGG | + | chr1_1:63436355-63436374 | None:intergenic | 40.0% | |
| ! | CAGAACTAAGGCTTCTCTTT+TGG | - | chr1_1:63436374-63436393 | Msa0035300:intron | 40.0% |
| ! | GGTGTAGTCTCTTGCTATAA+TGG | + | chr1_1:63436816-63436835 | None:intergenic | 40.0% |
| TATAGCAAGAGACTACACCT+CGG | - | chr1_1:63436817-63436836 | Msa0035300:intron | 40.0% | |
| TGGATTTCTGTCCTAGTGAA+AGG | - | chr1_1:63436857-63436876 | Msa0035300:CDS | 40.0% | |
| ATAGCCAAGACTAAGAGAAC+TGG | + | chr1_1:63437017-63437036 | None:intergenic | 40.0% | |
| CTTACAACCTCAGTAGAATG+GGG | - | chr1_1:63437072-63437091 | Msa0035300:intron | 40.0% | |
| TCAACATCAATTCGGATGGA+TGG | - | chr1_1:63437249-63437268 | Msa0035300:intron | 40.0% | |
| GGTTAATTACGCTCAGTGAA+TGG | - | chr1_1:63437292-63437311 | Msa0035300:intron | 40.0% | |
| ACTGTCCATTGAACGTGATT+AGG | - | chr1_1:63437348-63437367 | Msa0035300:intron | 40.0% | |
| ACACCTGAAAAATCATGGTG+TGG | - | chr1_1:63437460-63437479 | Msa0035300:intron | 40.0% | |
| AGCGGATGATTAATGATTGG+TGG | - | chr1_1:63437495-63437514 | Msa0035300:intron | 40.0% | |
| ! | GGTTAGTTACGTTTCATGGA+TGG | + | chr1_1:63437541-63437560 | None:intergenic | 40.0% |
| !!! | GCTGGTTGATTTTTTCCCAT+TGG | + | chr1_1:63437785-63437804 | None:intergenic | 40.0% |
| AAAATCAACCAGCTAGACCA+AGG | - | chr1_1:63437792-63437811 | Msa0035300:intron | 40.0% | |
| GTAGTATCAGTAGCTGTAAG+TGG | - | chr1_1:63437908-63437927 | Msa0035300:CDS | 40.0% | |
| GGCTGTTATGTAATCATGGA+TGG | - | chr1_1:63438132-63438151 | Msa0035300:five_prime_UTR | 40.0% | |
| ATCCGAAGAGGAAAGAGAGA+GGG | + | chr1_1:63432759-63432778 | None:intergenic | 45.0% | |
| TATCCGAAGAGGAAAGAGAG+AGG | + | chr1_1:63432760-63432779 | None:intergenic | 45.0% | |
| AATGATGCTGGATCACCTCA+GGG | - | chr1_1:63432918-63432937 | Msa0035300:three_prime_UTR | 45.0% | |
| TTACTTGCGGGTCATGGATT+CGG | - | chr1_1:63432946-63432965 | Msa0035300:three_prime_UTR | 45.0% | |
| TGGACCTTCCAAGAACAACT+AGG | + | chr1_1:63432989-63433008 | None:intergenic | 45.0% | |
| AGGACAAGAATTTCCACGCT+TGG | + | chr1_1:63433009-63433028 | None:intergenic | 45.0% | |
| CACTCTACATAGGACCTGTT+TGG | + | chr1_1:63433722-63433741 | None:intergenic | 45.0% | |
| AGAGCAAGGTTTCAATCCCA+TGG | + | chr1_1:63434076-63434095 | None:intergenic | 45.0% | |
| TCATACACTCTCCTAGCTCA+AGG | + | chr1_1:63434300-63434319 | None:intergenic | 45.0% | |
| ! | ACTGATAAGCTAGCGGATAG+TGG | - | chr1_1:63434361-63434380 | Msa0035300:intron | 45.0% |
| !! | TGTAGAGGGGTTAGTTCCTT+GGG | + | chr1_1:63434811-63434830 | None:intergenic | 45.0% |
| AAGGAACTAACCCCTCTACA+GGG | - | chr1_1:63434811-63434830 | Msa0035300:intron | 45.0% | |
| !! | GGATCTAAATTTGCTGCTGG+TGG | - | chr1_1:63434871-63434890 | Msa0035300:intron | 45.0% |
| !! | TAAATTTGCTGCTGGTGGGT+CGG | - | chr1_1:63434876-63434895 | Msa0035300:intron | 45.0% |
| GGATGGACACCTCAGAATTA+TGG | - | chr1_1:63435013-63435032 | Msa0035300:CDS | 45.0% | |
| GACACCTCAGAATTATGGAG+TGG | - | chr1_1:63435018-63435037 | Msa0035300:CDS | 45.0% | |
| TAGGCCACTCCATAATTCTG+AGG | + | chr1_1:63435025-63435044 | None:intergenic | 45.0% | |
| ! | GCCTAGCATGCGCATAATTT+TGG | - | chr1_1:63435040-63435059 | Msa0035300:CDS | 45.0% |
| ! | CGGACAGATTTGTGTGCTTT+TGG | + | chr1_1:63435071-63435090 | None:intergenic | 45.0% |
| ACACAAATCTGTCCGGGATA+TGG | - | chr1_1:63435076-63435095 | Msa0035300:CDS | 45.0% | |
| ! | CTGTCCGGGATATGGATTTT+AGG | - | chr1_1:63435084-63435103 | Msa0035300:CDS | 45.0% |
| GGCGCCAAATAGAAATGGTT+TGG | + | chr1_1:63435628-63435647 | None:intergenic | 45.0% | |
| TGAACGGCGCCAAATAGAAA+TGG | + | chr1_1:63435633-63435652 | None:intergenic | 45.0% | |
| CTATTTGGCGCCGTTCAAAA+AGG | - | chr1_1:63435636-63435655 | Msa0035300:intron | 45.0% | |
| AGGGGATAAGTCTCTTACAG+CGG | - | chr1_1:63435771-63435790 | Msa0035300:intron | 45.0% | |
| ! | CGGTTTGGGATATGAGTTCA+TGG | - | chr1_1:63435791-63435810 | Msa0035300:intron | 45.0% |
| GGAACAAAATAGGGCACAAG+AGG | - | chr1_1:63435812-63435831 | Msa0035300:CDS | 45.0% | |
| ATGTTGCGATAGTTGTACCG+AGG | + | chr1_1:63436837-63436856 | None:intergenic | 45.0% | |
| CGGTACAACTATCGCAACAT+TGG | - | chr1_1:63436837-63436856 | Msa0035300:intron | 45.0% | |
| TATGGATGTGTGCGAGCATA+TGG | + | chr1_1:63437151-63437170 | None:intergenic | 45.0% | |
| TCGTGCCTAATCACGTTCAA+TGG | + | chr1_1:63437356-63437375 | None:intergenic | 45.0% | |
| ! | TCGAGAACTCTGATTCGTTC+TGG | - | chr1_1:63437753-63437772 | Msa0035300:intron | 45.0% |
| ! | CGAGAACTCTGATTCGTTCT+GGG | - | chr1_1:63437754-63437773 | Msa0035300:intron | 45.0% |
| ! | GAGAACTCTGATTCGTTCTG+GGG | - | chr1_1:63437755-63437774 | Msa0035300:intron | 45.0% |
| !! | TTCGTTCTGGGGATTTCCAA+TGG | - | chr1_1:63437766-63437785 | Msa0035300:intron | 45.0% |
| !! | TCGTTCTGGGGATTTCCAAT+GGG | - | chr1_1:63437767-63437786 | Msa0035300:intron | 45.0% |
| GGTTTAAACCTTGGTCTAGC+TGG | + | chr1_1:63437803-63437822 | None:intergenic | 45.0% | |
| GATTGAGGGTCTCTCATCAT+TGG | + | chr1_1:63437824-63437843 | None:intergenic | 45.0% | |
| CGAACAACAACACATAGACG+CGG | + | chr1_1:63437881-63437900 | None:intergenic | 45.0% | |
| !!! | AAATATCATATTTAATTTAA+TGG | - | chr1_1:63436487-63436506 | Msa0035300:intron | 5.0% |
| !!! | AATATCATATTTAATTTAAT+GGG | - | chr1_1:63436488-63436507 | Msa0035300:intron | 5.0% |
| GACCCTCTCTCTTTCCTCTT+CGG | - | chr1_1:63432754-63432773 | Msa0035300:three_prime_UTR | 50.0% | |
| GAATGATGCTGGATCACCTC+AGG | - | chr1_1:63432917-63432936 | Msa0035300:three_prime_UTR | 50.0% | |
| ATCCATGACCCGCAAGTAAC+CGG | + | chr1_1:63432945-63432964 | None:intergenic | 50.0% | |
| AGAAGCTGAGGAAGGTGATC+CGG | - | chr1_1:63433966-63433985 | Msa0035300:intron | 50.0% | |
| !! | CTGTAGAGGGGTTAGTTCCT+TGG | + | chr1_1:63434812-63434831 | None:intergenic | 50.0% |
| CAAGGAACTAACCCCTCTAC+AGG | - | chr1_1:63434810-63434829 | Msa0035300:intron | 50.0% | |
| CTAACCCCTCTACAGGGTAT+TGG | - | chr1_1:63434817-63434836 | Msa0035300:intron | 50.0% | |
| GGAACCAATACCCTGTAGAG+GGG | + | chr1_1:63434824-63434843 | None:intergenic | 50.0% | |
| GGGAACCAATACCCTGTAGA+GGG | + | chr1_1:63434825-63434844 | None:intergenic | 50.0% | |
| TGGGAACCAATACCCTGTAG+AGG | + | chr1_1:63434826-63434845 | None:intergenic | 50.0% | |
| CTGATGGTTCAGCGAGAATC+TGG | - | chr1_1:63435396-63435415 | Msa0035300:intron | 50.0% | |
| TGGTTCAGCGAGAATCTGGA+AGG | - | chr1_1:63435400-63435419 | Msa0035300:intron | 50.0% | |
| GTATTTCCCGTCGTGGCTAA+CGG | + | chr1_1:63435866-63435885 | None:intergenic | 50.0% | |
| !! | GAGAAAGGTATTTCCCGTCG+TGG | + | chr1_1:63435873-63435892 | None:intergenic | 50.0% |
| CAATGCTCCCCATTCTACTG+AGG | + | chr1_1:63437082-63437101 | None:intergenic | 50.0% | |
| ! | CTCAGTAGAATGGGGAGCAT+TGG | - | chr1_1:63437080-63437099 | Msa0035300:intron | 50.0% |
| AGACGCGGTCACATATCTAC+TGG | + | chr1_1:63437866-63437885 | None:intergenic | 50.0% | |
| GTTCTTGGAAGGTCCAAGCG+TGG | - | chr1_1:63432993-63433012 | Msa0035300:three_prime_UTR | 55.0% | |
| GGGTGCACAGCAATAGCAAC+CGG | + | chr1_1:63433988-63434007 | None:intergenic | 55.0% | |
| GCTATTGCTGTGCACCCTAG+CGG | - | chr1_1:63433991-63434010 | Msa0035300:intron | 55.0% | |
| TTGCGAGACAGAGTGGTCAC+AGG | + | chr1_1:63435440-63435459 | None:intergenic | 55.0% | |
| GACCACTCTGTCTCGCAACT+CGG | - | chr1_1:63435442-63435461 | Msa0035300:CDS | 55.0% | |
| TACCGAGTTGCGAGACAGAG+TGG | + | chr1_1:63435447-63435466 | None:intergenic | 55.0% | |
| GTAATGGCCGTTAGCCACGA+CGG | - | chr1_1:63435856-63435875 | Msa0035300:CDS | 55.0% | |
| TAATGGCCGTTAGCCACGAC+GGG | - | chr1_1:63435857-63435876 | Msa0035300:CDS | 55.0% | |
| TGCTGGATCACCTCAGGGTC+CGG | - | chr1_1:63432923-63432942 | Msa0035300:three_prime_UTR | 60.0% | |
| CCTCAGGGTCCGGTTACTTG+CGG | - | chr1_1:63432933-63432952 | Msa0035300:three_prime_UTR | 60.0% | |
| CTCAGGGTCCGGTTACTTGC+GGG | - | chr1_1:63432934-63432953 | Msa0035300:three_prime_UTR | 60.0% | |
| GTCCGGTTACTTGCGGGTCA+TGG | - | chr1_1:63432940-63432959 | Msa0035300:three_prime_UTR | 60.0% | |
| CCGCAAGTAACCGGACCCTG+AGG | + | chr1_1:63432936-63432955 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 63432685 | 63438219 | 63432685 | ID=Msa0035300;Name=Msa0035300 |
| chr1_1 | mRNA | 63432685 | 63438219 | 63432685 | ID=Msa0035300-mRNA-1;Parent=Msa0035300;Name=Msa0035300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=227|1|1|1|1|1|10|342|392 |
| chr1_1 | exon | 63432685 | 63433217 | 63432685 | ID=Msa0035300-mRNA-1:exon:20184;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63433769 | 63433839 | 63433769 | ID=Msa0035300-mRNA-1:exon:20183;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63434026 | 63434145 | 63434026 | ID=Msa0035300-mRNA-1:exon:20182;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63435011 | 63435131 | 63435011 | ID=Msa0035300-mRNA-1:exon:20181;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63435247 | 63435319 | 63435247 | ID=Msa0035300-mRNA-1:exon:20180;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63435441 | 63435540 | 63435441 | ID=Msa0035300-mRNA-1:exon:20179;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63435799 | 63435890 | 63435799 | ID=Msa0035300-mRNA-1:exon:20178;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63436007 | 63436139 | 63436007 | ID=Msa0035300-mRNA-1:exon:20177;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63436852 | 63436952 | 63436852 | ID=Msa0035300-mRNA-1:exon:20176;Parent=Msa0035300-mRNA-1 |
| chr1_1 | exon | 63437816 | 63438219 | 63437816 | ID=Msa0035300-mRNA-1:exon:20175;Parent=Msa0035300-mRNA-1 |
| chr1_1 | five_prime_UTR | 63437993 | 63438219 | 63437993 | ID=Msa0035300-mRNA-1:five_prime_utr;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63437816 | 63437992 | 63437816 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63436852 | 63436952 | 63436852 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63436007 | 63436139 | 63436007 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63435799 | 63435890 | 63435799 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63435441 | 63435540 | 63435441 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63435247 | 63435319 | 63435247 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63435011 | 63435131 | 63435011 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63434026 | 63434145 | 63434026 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63433769 | 63433839 | 63433769 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | CDS | 63433027 | 63433217 | 63433027 | ID=Msa0035300-mRNA-1:cds;Parent=Msa0035300-mRNA-1 |
| chr1_1 | three_prime_UTR | 63432685 | 63433026 | 63432685 | ID=Msa0035300-mRNA-1:three_prime_utr;Parent=Msa0035300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
