Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746970 | XP_013469319.1 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746970 | sp|Q8GYE0|PHF1_ARATH | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 2.39e-179 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746970 | A0A072VNK4 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035300 | Msa0746970 | 0.966408 | 7.011640e-126 | -8.615850e-47 |
| Msa0746970 | Msa0812950 | 0.807737 | 4.367661e-50 | -8.615850e-47 |
| Msa0129350 | Msa0746970 | 0.995992 | 3.643271e-222 | -8.615850e-47 |
| Msa0176030 | Msa0746970 | 0.952042 | 5.660431e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746970 | MtrunA17_Chr1g0197641 | 98.980 | 392 | 4 | 0 | 1 | 392 | 1 | 392 | 0.0 | 802 |
| Msa0746970 | MtrunA17_Chr4g0043971 | 32.424 | 330 | 205 | 8 | 30 | 348 | 72 | 394 | 1.44e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746970 | AT3G52190.1 | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 2.43e-180 | 507 |
| Msa0746970 | AT5G50650.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.83e-42 | 153 |
| Msa0746970 | AT5G50550.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.83e-42 | 153 |
| Msa0746970 | AT2G01470.1 | 33.673 | 294 | 181 | 9 | 41 | 327 | 76 | 362 | 3.75e-39 | 144 |
Find 133 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAAATTTCTGAGAATT+TGG | 0.127504 | 5_1:+70598812 | Msa0746970:five_prime_UTR |
| GCCTAGCATGCGCATAATTT+TGG | 0.182728 | 5_1:+70600963 | Msa0746970:CDS |
| ATGAGTTCATGGAACAAAAT+AGG | 0.220715 | 5_1:+70601725 | Msa0746970:CDS |
| GGAACCAAACCATTTCTATT+TGG | 0.223219 | 5_1:+70601544 | Msa0746970:CDS |
| CGGACAGATTTGTGTGCTTT+TGG | 0.240942 | 5_1:-70600991 | None:intergenic |
| TCGAGAACTCTGATTCGTTC+TGG | 0.241586 | 5_1:+70603676 | Msa0746970:CDS |
| AATCTCAACCTAGTTGTTCT+TGG | 0.269966 | 5_1:+70598901 | Msa0746970:CDS |
| CTCAGCTTCTAACACAAAAT+TGG | 0.284131 | 5_1:-70599876 | None:intergenic |
| ATATCACAATAATGGCCTTT+TGG | 0.288267 | 5_1:-70603968 | None:intergenic |
| AGATAACCTTTCCAATCTTT+AGG | 0.319043 | 5_1:-70603043 | None:intergenic |
| ACACAAATCTGTCCGGGATA+TGG | 0.322553 | 5_1:+70600999 | Msa0746970:CDS |
| GATTTACGACTTAAGACATT+TGG | 0.331779 | 5_1:+70604077 | Msa0746970:three_prime_UTR |
| CGAGAACTCTGATTCGTTCT+GGG | 0.331945 | 5_1:+70603677 | Msa0746970:CDS |
| GTAGACAAAGAAACGGTTAT+AGG | 0.338185 | 5_1:-70598979 | None:intergenic |
| CTGATGGTTCAGCGAGAATC+TGG | 0.344529 | 5_1:+70601319 | Msa0746970:CDS |
| GGATGGACACCTCAGAATTA+TGG | 0.345586 | 5_1:+70600936 | Msa0746970:intron |
| AAATGGTTTGGTTCCATCCT+TGG | 0.346387 | 5_1:-70601536 | None:intergenic |
| CTGTAGAGGGGTTAGTTCCT+TGG | 0.349847 | 5_1:-70600732 | None:intergenic |
| CTCATCATTGGTTTAAACCT+TGG | 0.350046 | 5_1:-70603732 | None:intergenic |
| CTCAGGGTCCGGTTACTTGC+GGG | 0.357610 | 5_1:+70598857 | Msa0746970:CDS |
| CTATTTGGCGCCGTTCAAAA+AGG | 0.360925 | 5_1:+70601559 | Msa0746970:CDS |
| TTCTTTGTCTACTTCCCCTT+TGG | 0.362793 | 5_1:+70598990 | Msa0746970:CDS |
| CTGTTTACACATGTAGAATT+AGG | 0.365054 | 5_1:+70603880 | Msa0746970:three_prime_UTR |
| CACTAAAAGTAATACATGTC+TGG | 0.366135 | 5_1:-70600766 | None:intergenic |
| ATTTACGACTTAAGACATTT+GGG | 0.366926 | 5_1:+70604078 | Msa0746970:three_prime_UTR |
| GACCCTCTCTCTTTCCTCTT+CGG | 0.369254 | 5_1:+70598677 | Msa0746970:five_prime_UTR |
| TCAATTACATATCACAATAA+TGG | 0.376203 | 5_1:-70603976 | None:intergenic |
| GATTGAGGGTCTCTCATCAT+TGG | 0.378056 | 5_1:-70603744 | None:intergenic |
| ATCCATGACCCGCAAGTAAC+CGG | 0.389128 | 5_1:-70598865 | None:intergenic |
| TGCAGATTGTTTGAGCTCTA+TGG | 0.390492 | 5_1:+70600683 | Msa0746970:intron |
| CTCAATCATTTGATGATCAA+TGG | 0.390908 | 5_1:+70603760 | Msa0746970:CDS |
| AATGAGCGCAAGTTGTTTGT+TGG | 0.392138 | 5_1:-70598654 | None:intergenic |
| TAAGTCTCTTACAGCGGTTT+GGG | 0.395510 | 5_1:+70601700 | Msa0746970:CDS |
| TTACTTGCGGGTCATGGATT+CGG | 0.400800 | 5_1:+70598869 | Msa0746970:CDS |
| ATAAGTCTCTTACAGCGGTT+TGG | 0.404946 | 5_1:+70601699 | Msa0746970:CDS |
| TGAGTTCATGGAACAAAATA+GGG | 0.405250 | 5_1:+70601726 | Msa0746970:CDS |
| TCAATCATTTGATGATCAAT+GGG | 0.405468 | 5_1:+70603761 | Msa0746970:CDS |
| AACTGAATGTACCTAAAGAT+TGG | 0.410490 | 5_1:+70603032 | Msa0746970:CDS |
| GGTTTAAACCTTGGTCTAGC+TGG | 0.411531 | 5_1:-70603723 | None:intergenic |
| TGAAATATGAATTCAAAGTT+CGG | 0.417229 | 5_1:-70598795 | None:intergenic |
| GGCGCCAAATAGAAATGGTT+TGG | 0.423691 | 5_1:-70601548 | None:intergenic |
| CGGTTTGGGATATGAGTTCA+TGG | 0.428050 | 5_1:+70601714 | Msa0746970:CDS |
| GTCCGGTTACTTGCGGGTCA+TGG | 0.431039 | 5_1:+70598863 | Msa0746970:CDS |
| GGTGTAGTCTCTTGCTATAA+TGG | 0.431141 | 5_1:-70602736 | None:intergenic |
| TGTAGAGGGGTTAGTTCCTT+GGG | 0.433022 | 5_1:-70600731 | None:intergenic |
| TGAACGGCGCCAAATAGAAA+TGG | 0.434674 | 5_1:-70601553 | None:intergenic |
| GCAAGTTGTTTGTTGGATAG+TGG | 0.441867 | 5_1:-70598647 | None:intergenic |
| ACTTACAACCTCAGTAGAAT+GGG | 0.444696 | 5_1:+70602994 | Msa0746970:CDS |
| GAGAAAATCTGAAGCAAAGC+AGG | 0.450891 | 5_1:-70598949 | None:intergenic |
| TGCTGGATCACCTCAGGGTC+CGG | 0.464290 | 5_1:+70598846 | Msa0746970:CDS |
| CAAATTTCTGAGAATTTGGA+TGG | 0.465035 | 5_1:+70598816 | Msa0746970:exon |
| TAGACAAAGAAACGGTTATA+GGG | 0.466115 | 5_1:-70598978 | None:intergenic |
| GAATGATGCTGGATCACCTC+AGG | 0.466193 | 5_1:+70598840 | Msa0746970:CDS |
| TACTTACAACCTCAGTAGAA+TGG | 0.468911 | 5_1:+70602993 | Msa0746970:CDS |
| GGGTGCACAGCAATAGCAAC+CGG | 0.474667 | 5_1:-70599908 | None:intergenic |
| CAAGGAACTAACCCCTCTAC+AGG | 0.483255 | 5_1:+70600733 | Msa0746970:CDS |
| TTCGTTCTGGGGATTTCCAA+TGG | 0.491126 | 5_1:+70603689 | Msa0746970:CDS |
| CTCAGTAGAATGGGGAGCAT+TGG | 0.494832 | 5_1:+70603003 | Msa0746970:CDS |
| CTAACCCCTCTACAGGGTAT+TGG | 0.495022 | 5_1:+70600740 | Msa0746970:CDS |
| ATATAGGTTCTTACAGAGAA+AGG | 0.496610 | 5_1:-70601808 | None:intergenic |
| CAAAAGCACACAAATCTGTC+CGG | 0.496650 | 5_1:+70600992 | Msa0746970:CDS |
| CATTGATCATCAAATGATTG+AGG | 0.497207 | 5_1:-70603759 | None:intergenic |
| GGATCTAAATTTGCTGCTGG+TGG | 0.498037 | 5_1:+70600794 | Msa0746970:CDS |
| CCTCAGGGTCCGGTTACTTG+CGG | 0.499353 | 5_1:+70598856 | Msa0746970:CDS |
| CGGTACAACTATCGCAACAT+TGG | 0.505371 | 5_1:+70602760 | Msa0746970:CDS |
| AGGACAAGAATTTCCACGCT+TGG | 0.506092 | 5_1:-70598929 | None:intergenic |
| TCGTTCTGGGGATTTCCAAT+GGG | 0.509999 | 5_1:+70603690 | Msa0746970:CDS |
| CTAGCTTCAACTTCTACTGA+TGG | 0.515435 | 5_1:+70601303 | Msa0746970:CDS |
| GATGGATCTAAATTTGCTGC+TGG | 0.516767 | 5_1:+70600791 | Msa0746970:CDS |
| ATTGATCATCAAATGATTGA+GGG | 0.517917 | 5_1:-70603758 | None:intergenic |
| TGCAGAGTGGCAGATATACT+TGG | 0.519271 | 5_1:+70603605 | Msa0746970:intron |
| TCCAAAATTATGCGCATGCT+AGG | 0.524567 | 5_1:-70600964 | None:intergenic |
| ACTAAAAGTAATACATGTCT+GGG | 0.525288 | 5_1:-70600765 | None:intergenic |
| AGAAGCTGAGGAAGGTGATC+CGG | 0.530482 | 5_1:+70599889 | Msa0746970:CDS |
| GAGAACTCTGATTCGTTCTG+GGG | 0.533273 | 5_1:+70603678 | Msa0746970:CDS |
| TGGATTTCTGTCCTAGTGAA+AGG | 0.533688 | 5_1:+70602780 | Msa0746970:CDS |
| TCAACCTAGTTGTTCTTGGA+AGG | 0.537175 | 5_1:+70598905 | Msa0746970:CDS |
| TAATGGCCGTTAGCCACGAC+GGG | 0.539256 | 5_1:+70601780 | Msa0746970:CDS |
| AGACGCGGTCACATATCTAC+TGG | 0.544878 | 5_1:-70603786 | None:intergenic |
| ATTTGGATGGAGAATGATGC+TGG | 0.544930 | 5_1:+70598829 | Msa0746970:exon |
| GGCTGTTATGTAATCATGGA+TGG | 0.547222 | 5_1:+70604055 | Msa0746970:three_prime_UTR |
| TGGACCTTCCAAGAACAACT+AGG | 0.547578 | 5_1:-70598909 | None:intergenic |
| TGTACCTAAAATCCATATCC+CGG | 0.552105 | 5_1:-70601011 | None:intergenic |
| GATCTAAATTTGCTGCTGGT+GGG | 0.552966 | 5_1:+70600795 | Msa0746970:CDS |
| GTATTTCCCGTCGTGGCTAA+CGG | 0.556419 | 5_1:-70601786 | None:intergenic |
| TCTATGTGTTGTTGTTCGAT+TGG | 0.557849 | 5_1:+70603806 | Msa0746970:three_prime_UTR |
| TTGAGGCTGTTATGTAATCA+TGG | 0.570101 | 5_1:+70604051 | Msa0746970:three_prime_UTR |
| TAGAAAGTCTGCTTCAGTAA+TGG | 0.572648 | 5_1:+70601763 | Msa0746970:CDS |
| GGAACAAAATAGGGCACAAG+AGG | 0.574914 | 5_1:+70601735 | Msa0746970:CDS |
| AGAAACGGTTATAGGGTCAA+AGG | 0.575993 | 5_1:-70598971 | None:intergenic |
| GTGGTATCAAAATTCAACTC+AGG | 0.578946 | 5_1:+70603850 | Msa0746970:three_prime_UTR |
| AAAAGCACACAAATCTGTCC+GGG | 0.581294 | 5_1:+70600993 | Msa0746970:CDS |
| CACATAAAATCATCACCGCT+AGG | 0.583548 | 5_1:-70599929 | None:intergenic |
| GACCACTCTGTCTCGCAACT+CGG | 0.583764 | 5_1:+70601365 | Msa0746970:CDS |
| TAAATTTGCTGCTGGTGGGT+CGG | 0.586472 | 5_1:+70600799 | Msa0746970:CDS |
| GTGGATATTTACCTTTCACT+AGG | 0.590688 | 5_1:-70602791 | None:intergenic |
| ATCCGAAGAGGAAAGAGAGA+GGG | 0.593233 | 5_1:-70598679 | None:intergenic |
| GTAGTATCAGTAGCTGTAAG+TGG | 0.593314 | 5_1:+70603831 | Msa0746970:three_prime_UTR |
| GGGAACCAATACCCTGTAGA+GGG | 0.595092 | 5_1:-70600745 | None:intergenic |
| AAATTTGCAAGTTGAGCTTG+AGG | 0.604263 | 5_1:+70604034 | Msa0746970:three_prime_UTR |
| AGGGGATAAGTCTCTTACAG+CGG | 0.605985 | 5_1:+70601694 | Msa0746970:intron |
| TTTATGTGCTCTTTGAGCAA+TGG | 0.610268 | 5_1:+70599944 | Msa0746970:CDS |
| TTGCGAGACAGAGTGGTCAC+AGG | 0.610478 | 5_1:-70601360 | None:intergenic |
| AGGGGAAGTAGACAAAGAAA+CGG | 0.613448 | 5_1:-70598986 | None:intergenic |
| AATGTACCTAAAGATTGGAA+AGG | 0.615590 | 5_1:+70603037 | Msa0746970:CDS |
| ACATAAAATCATCACCGCTA+GGG | 0.616388 | 5_1:-70599928 | None:intergenic |
| TATCCGAAGAGGAAAGAGAG+AGG | 0.616703 | 5_1:-70598680 | None:intergenic |
| TTATATAGAAATATCCGAAG+AGG | 0.619452 | 5_1:-70598691 | None:intergenic |
| TGGGAACCAATACCCTGTAG+AGG | 0.620085 | 5_1:-70600746 | None:intergenic |
| TTTGTGTTAGAAGCTGAGGA+AGG | 0.624346 | 5_1:+70599881 | Msa0746970:CDS |
| GTAATGGCCGTTAGCCACGA+CGG | 0.633207 | 5_1:+70601779 | Msa0746970:CDS |
| TTTACGACTTAAGACATTTG+GGG | 0.637607 | 5_1:+70604079 | Msa0746970:three_prime_UTR |
| AGAATCTGGAAGGTTGAAGA+CGG | 0.646935 | 5_1:+70601333 | Msa0746970:CDS |
| GAGAAAGGTATTTCCCGTCG+TGG | 0.646943 | 5_1:-70601793 | None:intergenic |
| AAACATGAAACTGTTGCCCA+AGG | 0.647320 | 5_1:+70600715 | Msa0746970:CDS |
| GTTCTTGGAAGGTCCAAGCG+TGG | 0.648572 | 5_1:+70598916 | Msa0746970:CDS |
| AAAATCAACCAGCTAGACCA+AGG | 0.649835 | 5_1:+70603715 | Msa0746970:CDS |
| CAATGCTCCCCATTCTACTG+AGG | 0.662088 | 5_1:-70603002 | None:intergenic |
| TAGGCCACTCCATAATTCTG+AGG | 0.667952 | 5_1:-70600945 | None:intergenic |
| TGGTTCAGCGAGAATCTGGA+AGG | 0.668492 | 5_1:+70601323 | Msa0746970:CDS |
| TACCGAGTTGCGAGACAGAG+TGG | 0.677017 | 5_1:-70601367 | None:intergenic |
| AAGGAACTAACCCCTCTACA+GGG | 0.679695 | 5_1:+70600734 | Msa0746970:CDS |
| GACACCTCAGAATTATGGAG+TGG | 0.680012 | 5_1:+70600941 | Msa0746970:CDS |
| AATGATGCTGGATCACCTCA+GGG | 0.681405 | 5_1:+70598841 | Msa0746970:CDS |
| CCGCAAGTAACCGGACCCTG+AGG | 0.684658 | 5_1:-70598856 | None:intergenic |
| GGAACCAATACCCTGTAGAG+GGG | 0.704785 | 5_1:-70600744 | None:intergenic |
| GCTATTGCTGTGCACCCTAG+CGG | 0.708254 | 5_1:+70599914 | Msa0746970:CDS |
| CAATCATTTGATGATCAATG+GGG | 0.709097 | 5_1:+70603762 | Msa0746970:CDS |
| CTTACAACCTCAGTAGAATG+GGG | 0.712274 | 5_1:+70602995 | Msa0746970:CDS |
| ATTGAAGAGGAATACCAAAG+GGG | 0.723778 | 5_1:-70599004 | None:intergenic |
| ATGTTGCGATAGTTGTACCG+AGG | 0.735547 | 5_1:-70602757 | None:intergenic |
| CGAACAACAACACATAGACG+CGG | 0.749005 | 5_1:-70603801 | None:intergenic |
| TATAGCAAGAGACTACACCT+CGG | 0.778640 | 5_1:+70602740 | Msa0746970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATTAATTTTTATAT+TGG | - | chr5_1:70600378-70600397 | None:intergenic | 0.0% |
| !! | TTCTAAACTTAAAATAAAAA+GGG | - | chr5_1:70599100-70599119 | None:intergenic | 10.0% |
| !! | TTTCTAAACTTAAAATAAAA+AGG | - | chr5_1:70599101-70599120 | None:intergenic | 10.0% |
| !! | TATAAGTATTTATGCTATAA+GGG | - | chr5_1:70599207-70599226 | None:intergenic | 15.0% |
| !! | ATATAAGTATTTATGCTATA+AGG | - | chr5_1:70599208-70599227 | None:intergenic | 15.0% |
| !!! | TTTTTTCAAAAATGATATTG+AGG | + | chr5_1:70600416-70600435 | Msa0746970:intron | 15.0% |
| !!! | TTTTTCAAAAATGATATTGA+GGG | + | chr5_1:70600417-70600436 | Msa0746970:intron | 15.0% |
| !!! | AAAAGAAAATTTTGGATAAA+GGG | - | chr5_1:70601477-70601496 | None:intergenic | 15.0% |
| !!! | AAAAAGAAAATTTTGGATAA+AGG | - | chr5_1:70601478-70601497 | None:intergenic | 15.0% |
| !! | TTAAACATATTTAAGTCATT+TGG | + | chr5_1:70601857-70601876 | Msa0746970:intron | 15.0% |
| !!! | TTTATGTGAGTTTTTTAAAA+AGG | + | chr5_1:70602170-70602189 | Msa0746970:intron | 15.0% |
| !!! | ATTAGTCCAATTATTTTAAA+AGG | + | chr5_1:70602590-70602609 | Msa0746970:intron | 15.0% |
| !!! | AGTTTACCTTTTAAAATAAT+TGG | - | chr5_1:70602599-70602618 | None:intergenic | 15.0% |
| !! | ATGATTGATATTAATCAAAA+AGG | - | chr5_1:70602824-70602843 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGTTATATTCTA+TGG | - | chr5_1:70603126-70603145 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAACACAAATTG+TGG | - | chr5_1:70603359-70603378 | None:intergenic | 15.0% |
| !! | TGAAATATGAATTCAAAGTT+CGG | - | chr5_1:70598798-70598817 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTTCTGAGAATT+TGG | + | chr5_1:70598812-70598831 | Msa0746970:five_prime_UTR | 20.0% |
| !! | AAACTATATGTATATGTATG+TGG | + | chr5_1:70599031-70599050 | Msa0746970:intron | 20.0% |
| !! | AACTATATGTATATGTATGT+GGG | + | chr5_1:70599032-70599051 | Msa0746970:intron | 20.0% |
| !!! | TAAACTTTTGTGAGATTATT+AGG | - | chr5_1:70599482-70599501 | None:intergenic | 20.0% |
| !!! | ATTGTCCTTTAAAAAGTTAA+AGG | - | chr5_1:70600143-70600162 | None:intergenic | 20.0% |
| !! | AAAAACTGTGCAAAAAAATT+TGG | - | chr5_1:70600189-70600208 | None:intergenic | 20.0% |
| !! | CAAATTGAATTTGAATTGTT+TGG | + | chr5_1:70600327-70600346 | Msa0746970:intron | 20.0% |
| !!! | ATTAGAATTTAGAATTCTAC+TGG | - | chr5_1:70601092-70601111 | None:intergenic | 20.0% |
| !!! | GGTATAGTCTTTTTTATTTA+AGG | + | chr5_1:70601386-70601405 | Msa0746970:intron | 20.0% |
| !!! | AAAGAAAATTTTGGATAAAG+GGG | - | chr5_1:70601476-70601495 | None:intergenic | 20.0% |
| !!! | AAGAGACAAAAAGAAAATTT+TGG | - | chr5_1:70601485-70601504 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTTGTCTCTTT+AGG | + | chr5_1:70601486-70601505 | Msa0746970:intron | 20.0% |
| !! | AAAACTATAATTGTAAGGAA+AGG | - | chr5_1:70602107-70602126 | None:intergenic | 20.0% |
| !!! | TTTCCTTACAATTATAGTTT+TGG | + | chr5_1:70602106-70602125 | Msa0746970:intron | 20.0% |
| !! | ATTCCAAAACTATAATTGTA+AGG | - | chr5_1:70602112-70602131 | None:intergenic | 20.0% |
| !!! | TAGTTTTGGAATTGTTTATA+AGG | + | chr5_1:70602120-70602139 | Msa0746970:intron | 20.0% |
| !!! | TTTTCATGAAATATTTGAGA+AGG | + | chr5_1:70602223-70602242 | Msa0746970:intron | 20.0% |
| !! | TTTCATGAAATATTTGAGAA+GGG | + | chr5_1:70602224-70602243 | Msa0746970:intron | 20.0% |
| !!! | CATAGTTTTGTAAATATTAG+TGG | + | chr5_1:70602543-70602562 | Msa0746970:intron | 20.0% |
| !! | TAAAAGTTTAAAAAATGCAG+TGG | + | chr5_1:70602884-70602903 | Msa0746970:intron | 20.0% |
| !!! | AGCTTTTATTATTTTATGCA+GGG | + | chr5_1:70602967-70602986 | Msa0746970:intron | 20.0% |
| !! | AACAAAAATCAACATCAATT+CGG | + | chr5_1:70603164-70603183 | Msa0746970:intron | 20.0% |
| !! | AACAAATTTCGAAAACAATA+TGG | - | chr5_1:70603509-70603528 | None:intergenic | 20.0% |
| !!! | AAATTTTCAGCAAAAAGAAA+AGG | - | chr5_1:70603943-70603962 | None:intergenic | 20.0% |
| !! | TCAATTACATATCACAATAA+TGG | - | chr5_1:70603979-70603998 | None:intergenic | 20.0% |
| ! | TTATATAGAAATATCCGAAG+AGG | - | chr5_1:70598694-70598713 | None:intergenic | 25.0% |
| ! | ATATAGTTTGAGAATTGAAG+AGG | - | chr5_1:70599020-70599039 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr5_1:70599179-70599198 | None:intergenic | 25.0% |
| ! | TAAGCATTTGTGAGATTATT+AGG | - | chr5_1:70599366-70599385 | None:intergenic | 25.0% |
| ! | TATTTAAGCTATAAGCTGTA+AGG | + | chr5_1:70599508-70599527 | Msa0746970:intron | 25.0% |
| ! | TAAACATTCGTGAGATTATT+AGG | - | chr5_1:70599593-70599612 | None:intergenic | 25.0% |
| !!! | TGGTTTTAATCTTGAGTTTT+TGG | + | chr5_1:70599786-70599805 | Msa0746970:intron | 25.0% |
| ! | ATTATTCATAAAAGAGAGCA+AGG | - | chr5_1:70600013-70600032 | None:intergenic | 25.0% |
| ! | AAAGCTACTACTTTAAGTAA+CGG | + | chr5_1:70600089-70600108 | Msa0746970:intron | 25.0% |
| !!! | CTGTTCCTTTAACTTTTTAA+AGG | + | chr5_1:70600135-70600154 | Msa0746970:intron | 25.0% |
| !! | GTGTATGACATAATAGTTTT+AGG | + | chr5_1:70600235-70600254 | Msa0746970:intron | 25.0% |
| ! | CTACTCTTAAGAAATAAGTA+CGG | - | chr5_1:70600606-70600625 | None:intergenic | 25.0% |
| ! | ACTAAAAGTAATACATGTCT+GGG | - | chr5_1:70600768-70600787 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTAGTGTTGA+TGG | + | chr5_1:70600773-70600792 | Msa0746970:CDS | 25.0% |
| ! | ACAGCATAAAAACAATTTGT+TGG | - | chr5_1:70600843-70600862 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTAAGGACCTT+TGG | + | chr5_1:70601394-70601413 | Msa0746970:intron | 25.0% |
| ! | TAATCATGATTAAGTCATCT+AGG | + | chr5_1:70601946-70601965 | Msa0746970:intron | 25.0% |
| !!! | AAAATGATTTGGTAATCTCT+AGG | - | chr5_1:70601973-70601992 | None:intergenic | 25.0% |
| ! | TTGAGCAAAAGAAAATGATT+TGG | - | chr5_1:70601984-70602003 | None:intergenic | 25.0% |
| ! | AATTAGAAATGAGCATCATA+AGG | - | chr5_1:70602048-70602067 | None:intergenic | 25.0% |
| !!! | GAGAAAGTTATAGCTATTTT+AGG | + | chr5_1:70602200-70602219 | Msa0746970:intron | 25.0% |
| !! | TGGATTTGAACAAATACTTT+TGG | + | chr5_1:70602336-70602355 | Msa0746970:intron | 25.0% |
| !! | ATCAGATCTCTGTAATTTTA+GGG | + | chr5_1:70602661-70602680 | Msa0746970:intron | 25.0% |
| ! | GCATAAAATAATAAAAGCTC+AGG | - | chr5_1:70602966-70602985 | None:intergenic | 25.0% |
| !!! | GAGCTTTTATTATTTTATGC+AGG | + | chr5_1:70602966-70602985 | Msa0746970:intron | 25.0% |
| ! | AATGGTTAATGAATATGACA+TGG | + | chr5_1:70603233-70603252 | Msa0746970:intron | 25.0% |
| !!! | ATCATGTTTATTTTATCACG+TGG | - | chr5_1:70603327-70603346 | None:intergenic | 25.0% |
| ! | GATGGTTAATGAATATAACA+AGG | - | chr5_1:70603446-70603465 | None:intergenic | 25.0% |
| ! | AATTTCGAAAACAATATGGA+TGG | - | chr5_1:70603505-70603524 | None:intergenic | 25.0% |
| ! | ATTGATCATCAAATGATTGA+GGG | - | chr5_1:70603761-70603780 | None:intergenic | 25.0% |
| !! | TCAATCATTTGATGATCAAT+GGG | + | chr5_1:70603761-70603780 | Msa0746970:CDS | 25.0% |
| !! | CTGAAAATTTTAAACCCAAA+AGG | + | chr5_1:70603953-70603972 | Msa0746970:three_prime_UTR | 25.0% |
| ! | ATTTACGACTTAAGACATTT+GGG | + | chr5_1:70604078-70604097 | Msa0746970:three_prime_UTR | 25.0% |
| ! | CAAATTTCTGAGAATTTGGA+TGG | + | chr5_1:70598816-70598835 | Msa0746970:exon | 30.0% |
| !! | AACAACTAGGTTGAGATTTT+CGG | - | chr5_1:70598899-70598918 | None:intergenic | 30.0% |
| TAGACAAAGAAACGGTTATA+GGG | - | chr5_1:70598981-70599000 | None:intergenic | 30.0% | |
| AATTGAAGAGGAATACCAAA+GGG | - | chr5_1:70599008-70599027 | None:intergenic | 30.0% | |
| TTGCAGTTGTATATAGACTA+TGG | + | chr5_1:70599153-70599172 | Msa0746970:intron | 30.0% | |
| TATGCCTGTATATAACCTAT+AGG | + | chr5_1:70599384-70599403 | Msa0746970:intron | 30.0% | |
| TCACGAATGTTTATACAAGT+AGG | + | chr5_1:70599600-70599619 | Msa0746970:intron | 30.0% | |
| !! | TTATTTTGTGCATTCCCTTT+TGG | + | chr5_1:70599683-70599702 | Msa0746970:intron | 30.0% |
| TTTCTCAGCTAAAACCAAAA+GGG | - | chr5_1:70599700-70599719 | None:intergenic | 30.0% | |
| ATTTCTCAGCTAAAACCAAA+AGG | - | chr5_1:70599701-70599720 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGAACAAGATTGT+TGG | + | chr5_1:70599724-70599743 | Msa0746970:intron | 30.0% |
| !! | ATAATTCTGCTTTTGAAGAG+TGG | + | chr5_1:70599766-70599785 | Msa0746970:intron | 30.0% |
| !! | GAGTTTTTGGATCATGTAAT+TGG | + | chr5_1:70599799-70599818 | Msa0746970:intron | 30.0% |
| GTTAAAGGAACAGAAAATGT+TGG | - | chr5_1:70600128-70600147 | None:intergenic | 30.0% | |
| !!! | TAATAGTTTTAGGCTCAGTT+TGG | + | chr5_1:70600245-70600264 | Msa0746970:intron | 30.0% |
| TGAAGTAGAACTGTTAGTAA+CGG | - | chr5_1:70600531-70600550 | None:intergenic | 30.0% | |
| GCTTATATGTTATAAGCTTG+CGG | + | chr5_1:70600560-70600579 | Msa0746970:intron | 30.0% | |
| CACTAAAAGTAATACATGTC+TGG | - | chr5_1:70600769-70600788 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTTATGCTGTGTG+TGG | + | chr5_1:70600846-70600865 | Msa0746970:intron | 30.0% |
| AAGACAGAAGTAAAACATAC+AGG | - | chr5_1:70600905-70600924 | None:intergenic | 30.0% | |
| ! | AGATGAATGCATCTTTTAGA+AGG | - | chr5_1:70601063-70601082 | None:intergenic | 30.0% |
| TGACAAAACGAAAGACAATA+CGG | - | chr5_1:70601259-70601278 | None:intergenic | 30.0% | |
| TTTATTTAAGGACCTTTGGA+AGG | + | chr5_1:70601398-70601417 | Msa0746970:intron | 30.0% | |
| !!! | TGAATTATGTCGATTTTCCA+AGG | + | chr5_1:70601519-70601538 | Msa0746970:CDS | 30.0% |
| ! | GATACTCATACCTTTTTGAA+CGG | - | chr5_1:70601572-70601591 | None:intergenic | 30.0% |
| TCAAGTATGACCTTAATCAT+TGG | + | chr5_1:70601654-70601673 | Msa0746970:intron | 30.0% | |
| !! | ATTAGAGGTACCAATGATTA+AGG | - | chr5_1:70601667-70601686 | None:intergenic | 30.0% |
| !!! | TGGTACCTCTAATTTTGATT+AGG | + | chr5_1:70601674-70601693 | Msa0746970:intron | 30.0% |
| !!! | GGTACCTCTAATTTTGATTA+GGG | + | chr5_1:70601675-70601694 | Msa0746970:intron | 30.0% |
| !!! | GTACCTCTAATTTTGATTAG+GGG | + | chr5_1:70601676-70601695 | Msa0746970:intron | 30.0% |
| TATCCCCTAATCAAAATTAG+AGG | - | chr5_1:70601682-70601701 | None:intergenic | 30.0% | |
| ATGAGTTCATGGAACAAAAT+AGG | + | chr5_1:70601725-70601744 | Msa0746970:CDS | 30.0% | |
| TGAGTTCATGGAACAAAATA+GGG | + | chr5_1:70601726-70601745 | Msa0746970:CDS | 30.0% | |
| ATATAGGTTCTTACAGAGAA+AGG | - | chr5_1:70601811-70601830 | None:intergenic | 30.0% | |
| GATATGTGCAAGGTAAATAT+AGG | - | chr5_1:70601827-70601846 | None:intergenic | 30.0% | |
| CAAAACAATTGATATGTGCA+AGG | - | chr5_1:70601837-70601856 | None:intergenic | 30.0% | |
| TTTAAGTCATTTGGATAGCA+AGG | + | chr5_1:70601866-70601885 | Msa0746970:intron | 30.0% | |
| TTTGTCATATCTCAGAACTA+AGG | + | chr5_1:70602285-70602304 | Msa0746970:intron | 30.0% | |
| AGGATTTATGTTCGAATTGA+CGG | - | chr5_1:70602503-70602522 | None:intergenic | 30.0% | |
| TTGACTATAACGATTCTGAA+AGG | - | chr5_1:70602523-70602542 | None:intergenic | 30.0% | |
| ! | CTAATTTTATCTGTGATGCA+CGG | - | chr5_1:70602575-70602594 | None:intergenic | 30.0% |
| ! | CATCAGATCTCTGTAATTTT+AGG | + | chr5_1:70602660-70602679 | Msa0746970:intron | 30.0% |
| !!! | AATTTTAGGGCAAGTAAAGA+TGG | + | chr5_1:70602674-70602693 | Msa0746970:intron | 30.0% |
| ! | ATCATTCATGAACACACTTT+TGG | + | chr5_1:70602839-70602858 | Msa0746970:intron | 30.0% |
| ! | TCATTCATGAACACACTTTT+GGG | + | chr5_1:70602840-70602859 | Msa0746970:intron | 30.0% |
| GGCCTAAAATTTCAATCTAT+TGG | + | chr5_1:70602905-70602924 | Msa0746970:intron | 30.0% | |
| ! | GGCCAATAGATTGAAATTTT+AGG | - | chr5_1:70602910-70602929 | None:intergenic | 30.0% |
| ! | ACTAAGAGAACTGGTTTATT+AGG | - | chr5_1:70602931-70602950 | None:intergenic | 30.0% |
| AACTGAATGTACCTAAAGAT+TGG | + | chr5_1:70603032-70603051 | Msa0746970:CDS | 30.0% | |
| AATGTACCTAAAGATTGGAA+AGG | + | chr5_1:70603037-70603056 | Msa0746970:CDS | 30.0% | |
| AGATAACCTTTCCAATCTTT+AGG | - | chr5_1:70603046-70603065 | None:intergenic | 30.0% | |
| ! | ACGATTGTGAATGTGTTTTA+TGG | - | chr5_1:70603092-70603111 | None:intergenic | 30.0% |
| TATATTCTATGGTCTCAGAA+AGG | - | chr5_1:70603115-70603134 | None:intergenic | 30.0% | |
| AAAATCAACATCAATTCGGA+TGG | + | chr5_1:70603168-70603187 | Msa0746970:intron | 30.0% | |
| GTTAATGTCGTTCAAATATG+TGG | + | chr5_1:70603194-70603213 | Msa0746970:intron | 30.0% | |
| TAAACACAAATTGTGGTCAA+TGG | - | chr5_1:70603352-70603371 | None:intergenic | 30.0% | |
| AATGAACACCTGAAAAATCA+TGG | + | chr5_1:70603378-70603397 | Msa0746970:intron | 30.0% | |
| GTGTGGTTAATTACATTTAG+CGG | + | chr5_1:70603400-70603419 | Msa0746970:intron | 30.0% | |
| ! | TTTAGCGGATGATTAATGAT+TGG | + | chr5_1:70603415-70603434 | Msa0746970:intron | 30.0% |
| !!! | AGATATACTTGGTGCTTTTA+GGG | + | chr5_1:70603616-70603635 | Msa0746970:CDS | 30.0% |
| !!! | TTTAGGGCTATTTTTAGTGT+CGG | + | chr5_1:70603632-70603651 | Msa0746970:CDS | 30.0% |
| CATTGATCATCAAATGATTG+AGG | - | chr5_1:70603762-70603781 | None:intergenic | 30.0% | |
| ! | CTCAATCATTTGATGATCAA+TGG | + | chr5_1:70603760-70603779 | Msa0746970:CDS | 30.0% |
| ! | CAATCATTTGATGATCAATG+GGG | + | chr5_1:70603762-70603781 | Msa0746970:CDS | 30.0% |
| CTGTTTACACATGTAGAATT+AGG | + | chr5_1:70603880-70603899 | Msa0746970:three_prime_UTR | 30.0% | |
| ! | TATCACAATAATGGCCTTTT+GGG | - | chr5_1:70603970-70603989 | None:intergenic | 30.0% |
| ! | ATATCACAATAATGGCCTTT+TGG | - | chr5_1:70603971-70603990 | None:intergenic | 30.0% |
| GATTTACGACTTAAGACATT+TGG | + | chr5_1:70604077-70604096 | Msa0746970:three_prime_UTR | 30.0% | |
| TTTACGACTTAAGACATTTG+GGG | + | chr5_1:70604079-70604098 | Msa0746970:three_prime_UTR | 30.0% | |
| !!! | GGGCATTTTTTTTTAGCTTA+TGG | + | chr5_1:70604099-70604118 | Msa0746970:three_prime_UTR | 30.0% |
| ! | AGTTCGGTTCTTTTTCCAAT+CGG | - | chr5_1:70598782-70598801 | None:intergenic | 35.0% |
| !! | ACAACTAGGTTGAGATTTTC+GGG | - | chr5_1:70598898-70598917 | None:intergenic | 35.0% |
| AATCTCAACCTAGTTGTTCT+TGG | + | chr5_1:70598901-70598920 | Msa0746970:CDS | 35.0% | |
| GTAGACAAAGAAACGGTTAT+AGG | - | chr5_1:70598982-70599001 | None:intergenic | 35.0% | |
| ATTGAAGAGGAATACCAAAG+GGG | - | chr5_1:70599007-70599026 | None:intergenic | 35.0% | |
| GAATTGAAGAGGAATACCAA+AGG | - | chr5_1:70599009-70599028 | None:intergenic | 35.0% | |
| ATATAGACTATGGCCATGTT+TGG | + | chr5_1:70599163-70599182 | Msa0746970:intron | 35.0% | |
| ACAGTTTATGAACATGCCAT+AGG | + | chr5_1:70599336-70599355 | Msa0746970:intron | 35.0% | |
| ACAGCCTATAGGTTATATAC+AGG | - | chr5_1:70599391-70599410 | None:intergenic | 35.0% | |
| TAGCTTATGATACAGCCTAT+AGG | - | chr5_1:70599402-70599421 | None:intergenic | 35.0% | |
| ! | CTATAAGCTGTAAGGTATTC+TGG | + | chr5_1:70599516-70599535 | Msa0746970:intron | 35.0% |
| ! | TGTTTGGATCGACTTATTTC+AGG | - | chr5_1:70599629-70599648 | None:intergenic | 35.0% |
| TGAAATAAGTCGATCCAAAC+AGG | + | chr5_1:70599628-70599647 | Msa0746970:intron | 35.0% | |
| CTCAGCTTCTAACACAAAAT+TGG | - | chr5_1:70599879-70599898 | None:intergenic | 35.0% | |
| ! | CAATTTTGTGTTAGAAGCTG+AGG | + | chr5_1:70599877-70599896 | Msa0746970:CDS | 35.0% |
| ACATAAAATCATCACCGCTA+GGG | - | chr5_1:70599931-70599950 | None:intergenic | 35.0% | |
| TTTATGTGCTCTTTGAGCAA+TGG | + | chr5_1:70599944-70599963 | Msa0746970:CDS | 35.0% | |
| ! | AGCTTCTTTTCTAATAGCCA+TGG | + | chr5_1:70599979-70599998 | Msa0746970:intron | 35.0% |
| ! | GCTTCTTTTCTAATAGCCAT+GGG | + | chr5_1:70599980-70599999 | Msa0746970:intron | 35.0% |
| ! | TGTTCTTATTTCCTTGAGCT+AGG | + | chr5_1:70600209-70600228 | Msa0746970:intron | 35.0% |
| TATGTTATAAGCTTGCGGTT+TGG | + | chr5_1:70600565-70600584 | Msa0746970:intron | 35.0% | |
| ! | ATATTTTGCCTCGAGTTCTA+TGG | + | chr5_1:70600633-70600652 | Msa0746970:intron | 35.0% |
| AATCTAAACCATAGAACTCG+AGG | - | chr5_1:70600644-70600663 | None:intergenic | 35.0% | |
| TGTACCTAAAATCCATATCC+CGG | - | chr5_1:70601014-70601033 | None:intergenic | 35.0% | |
| TAGTCTAATTATTGCAGGCA+CGG | - | chr5_1:70601151-70601170 | None:intergenic | 35.0% | |
| TGCCTGCAATAATTAGACTA+AGG | + | chr5_1:70601151-70601170 | Msa0746970:intron | 35.0% | |
| CTCCTTAGTCTAATTATTGC+AGG | - | chr5_1:70601156-70601175 | None:intergenic | 35.0% | |
| AAATCTTCAGATCCTTCCAA+AGG | - | chr5_1:70601413-70601432 | None:intergenic | 35.0% | |
| !!! | TTATGTCGATTTTCCAAGGA+TGG | + | chr5_1:70601523-70601542 | Msa0746970:CDS | 35.0% |
| GGAACCAAACCATTTCTATT+TGG | + | chr5_1:70601544-70601563 | Msa0746970:CDS | 35.0% | |
| TAGAAAGTCTGCTTCAGTAA+TGG | + | chr5_1:70601763-70601782 | Msa0746970:CDS | 35.0% | |
| TTGTATTGCCAAAACTGTGA+AGG | + | chr5_1:70601899-70601918 | Msa0746970:intron | 35.0% | |
| TGTATTGCCAAAACTGTGAA+GGG | + | chr5_1:70601900-70601919 | Msa0746970:intron | 35.0% | |
| AGATATGACAAACATGGCAT+GGG | - | chr5_1:70602277-70602296 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATATGACAAACA+TGG | - | chr5_1:70602283-70602302 | None:intergenic | 35.0% |
| ! | AGAACTAAGGCTTCTCTTTT+GGG | + | chr5_1:70602298-70602317 | Msa0746970:intron | 35.0% |
| TTGGGCTGTTCAATTTGATA+TGG | + | chr5_1:70602316-70602335 | Msa0746970:intron | 35.0% | |
| AGCTCAAGATTATACAAGCA+AGG | - | chr5_1:70602640-70602659 | None:intergenic | 35.0% | |
| GTGGATATTTACCTTTCACT+AGG | - | chr5_1:70602794-70602813 | None:intergenic | 35.0% | |
| TGAAAGGTAAATATCCACAC+TGG | + | chr5_1:70602796-70602815 | Msa0746970:intron | 35.0% | |
| !! | TAATCAAAAAGGTACCAGTG+TGG | - | chr5_1:70602813-70602832 | None:intergenic | 35.0% |
| ! | CATTCATGAACACACTTTTG+GGG | + | chr5_1:70602841-70602860 | Msa0746970:intron | 35.0% |
| TAAACCAGTTCTCTTAGTCT+TGG | + | chr5_1:70602933-70602952 | Msa0746970:intron | 35.0% | |
| TACTTACAACCTCAGTAGAA+TGG | + | chr5_1:70602993-70603012 | Msa0746970:CDS | 35.0% | |
| ACTTACAACCTCAGTAGAAT+GGG | + | chr5_1:70602994-70603013 | Msa0746970:CDS | 35.0% | |
| ! | ATTTTATCACGTGGAGATGA+CGG | - | chr5_1:70603318-70603337 | None:intergenic | 35.0% |
| ! | TAACCACACCATGATTTTTC+AGG | - | chr5_1:70603389-70603408 | None:intergenic | 35.0% |
| ! | ATGTGGTTAGTTACGTTTCA+TGG | - | chr5_1:70603468-70603487 | None:intergenic | 35.0% |
| ! | TGGTTGGTGCAATTTAAATG+TGG | - | chr5_1:70603485-70603504 | None:intergenic | 35.0% |
| TCGAAAACAATATGGATGGT+TGG | - | chr5_1:70603501-70603520 | None:intergenic | 35.0% | |
| !!! | CAGATATACTTGGTGCTTTT+AGG | + | chr5_1:70603615-70603634 | Msa0746970:CDS | 35.0% |
| !! | CTCATCATTGGTTTAAACCT+TGG | - | chr5_1:70603735-70603754 | None:intergenic | 35.0% |
| ! | TCTATGTGTTGTTGTTCGAT+TGG | + | chr5_1:70603806-70603825 | Msa0746970:three_prime_UTR | 35.0% |
| GTGGTATCAAAATTCAACTC+AGG | + | chr5_1:70603850-70603869 | Msa0746970:three_prime_UTR | 35.0% | |
| ! | AAATTTGCAAGTTGAGCTTG+AGG | + | chr5_1:70604034-70604053 | Msa0746970:three_prime_UTR | 35.0% |
| TTGAGGCTGTTATGTAATCA+TGG | + | chr5_1:70604051-70604070 | Msa0746970:three_prime_UTR | 35.0% | |
| ! | GCAAGTTGTTTGTTGGATAG+TGG | - | chr5_1:70598650-70598669 | None:intergenic | 40.0% |
| AATGAGCGCAAGTTGTTTGT+TGG | - | chr5_1:70598657-70598676 | None:intergenic | 40.0% | |
| ! | TTGATTTTCAGTGACCCGAT+TGG | + | chr5_1:70598764-70598783 | Msa0746970:five_prime_UTR | 40.0% |
| ! | GTTCGGTTCTTTTTCCAATC+GGG | - | chr5_1:70598781-70598800 | None:intergenic | 40.0% |
| ATTTGGATGGAGAATGATGC+TGG | + | chr5_1:70598829-70598848 | Msa0746970:exon | 40.0% | |
| TCAACCTAGTTGTTCTTGGA+AGG | + | chr5_1:70598905-70598924 | Msa0746970:CDS | 40.0% | |
| ! | GAGAAAATCTGAAGCAAAGC+AGG | - | chr5_1:70598952-70598971 | None:intergenic | 40.0% |
| AGAAACGGTTATAGGGTCAA+AGG | - | chr5_1:70598974-70598993 | None:intergenic | 40.0% | |
| AGGGGAAGTAGACAAAGAAA+CGG | - | chr5_1:70598989-70599008 | None:intergenic | 40.0% | |
| TTCTTTGTCTACTTCCCCTT+TGG | + | chr5_1:70598990-70599009 | Msa0746970:CDS | 40.0% | |
| GAGATTATTAGGAGAGCCTA+TGG | - | chr5_1:70599355-70599374 | None:intergenic | 40.0% | |
| GGCTGTATCATAAGCTATTC+TGG | + | chr5_1:70599405-70599424 | Msa0746970:intron | 40.0% | |
| GCATATGCATCACTCTACAT+AGG | - | chr5_1:70599655-70599674 | None:intergenic | 40.0% | |
| TTCCTGAACAAGATTGTTGG+TGG | + | chr5_1:70599727-70599746 | Msa0746970:intron | 40.0% | |
| TTCCACCAACAATCTTGTTC+AGG | - | chr5_1:70599732-70599751 | None:intergenic | 40.0% | |
| GGATCATGTAATTGGAAGTG+TGG | + | chr5_1:70599807-70599826 | Msa0746970:intron | 40.0% | |
| TTTGTGTTAGAAGCTGAGGA+AGG | + | chr5_1:70599881-70599900 | Msa0746970:CDS | 40.0% | |
| CACATAAAATCATCACCGCT+AGG | - | chr5_1:70599932-70599951 | None:intergenic | 40.0% | |
| CTACTACTTTAAGTAACGGC+AGG | + | chr5_1:70600093-70600112 | Msa0746970:intron | 40.0% | |
| ATTTGGTACAACTGAGCATG+CGG | - | chr5_1:70600172-70600191 | None:intergenic | 40.0% | |
| GTAGATGACTGATAAGCTAG+CGG | + | chr5_1:70600277-70600296 | Msa0746970:intron | 40.0% | |
| TGCAGATTGTTTGAGCTCTA+TGG | + | chr5_1:70600683-70600702 | Msa0746970:intron | 40.0% | |
| AAACATGAAACTGTTGCCCA+AGG | + | chr5_1:70600715-70600734 | Msa0746970:CDS | 40.0% | |
| !! | GATGGATCTAAATTTGCTGC+TGG | + | chr5_1:70600791-70600810 | Msa0746970:CDS | 40.0% |
| !! | GATCTAAATTTGCTGCTGGT+GGG | + | chr5_1:70600795-70600814 | Msa0746970:CDS | 40.0% |
| CTTCTGTCTTTAACACGTGT+AGG | + | chr5_1:70600915-70600934 | Msa0746970:intron | 40.0% | |
| TGTCTTTAACACGTGTAGGA+TGG | + | chr5_1:70600919-70600938 | Msa0746970:intron | 40.0% | |
| TCCAAAATTATGCGCATGCT+AGG | - | chr5_1:70600967-70600986 | None:intergenic | 40.0% | |
| ! | CAAAAGCACACAAATCTGTC+CGG | + | chr5_1:70600992-70601011 | Msa0746970:CDS | 40.0% |
| ! | AAAAGCACACAAATCTGTCC+GGG | + | chr5_1:70600993-70601012 | Msa0746970:CDS | 40.0% |
| CAATGTCATCAAGGTTTCAC+AGG | - | chr5_1:70601229-70601248 | None:intergenic | 40.0% | |
| GGTCAGTATCAATGTCATCA+AGG | - | chr5_1:70601238-70601257 | None:intergenic | 40.0% | |
| CTAGCTTCAACTTCTACTGA+TGG | + | chr5_1:70601303-70601322 | Msa0746970:CDS | 40.0% | |
| AGAATCTGGAAGGTTGAAGA+CGG | + | chr5_1:70601333-70601352 | Msa0746970:CDS | 40.0% | |
| !! | AAATGGTTTGGTTCCATCCT+TGG | - | chr5_1:70601539-70601558 | None:intergenic | 40.0% |
| ATAAGTCTCTTACAGCGGTT+TGG | + | chr5_1:70601699-70601718 | Msa0746970:CDS | 40.0% | |
| TAAGTCTCTTACAGCGGTTT+GGG | + | chr5_1:70601700-70601719 | Msa0746970:CDS | 40.0% | |
| AAGTCATTTGGATAGCAAGG+TGG | + | chr5_1:70601869-70601888 | Msa0746970:intron | 40.0% | |
| ! | TTCTTCACCCTTCACAGTTT+TGG | - | chr5_1:70601910-70601929 | None:intergenic | 40.0% |
| GAGATATGACAAACATGGCA+TGG | - | chr5_1:70602278-70602297 | None:intergenic | 40.0% | |
| ! | CAGAACTAAGGCTTCTCTTT+TGG | + | chr5_1:70602297-70602316 | Msa0746970:intron | 40.0% |
| ! | GGTGTAGTCTCTTGCTATAA+TGG | - | chr5_1:70602739-70602758 | None:intergenic | 40.0% |
| TATAGCAAGAGACTACACCT+CGG | + | chr5_1:70602740-70602759 | Msa0746970:CDS | 40.0% | |
| TGGATTTCTGTCCTAGTGAA+AGG | + | chr5_1:70602780-70602799 | Msa0746970:CDS | 40.0% | |
| ATAGCCAAGACTAAGAGAAC+TGG | - | chr5_1:70602940-70602959 | None:intergenic | 40.0% | |
| CTTACAACCTCAGTAGAATG+GGG | + | chr5_1:70602995-70603014 | Msa0746970:CDS | 40.0% | |
| TCAACATCAATTCGGATGGA+TGG | + | chr5_1:70603172-70603191 | Msa0746970:intron | 40.0% | |
| GGTTAATTACGCTCAGTGAA+TGG | + | chr5_1:70603215-70603234 | Msa0746970:intron | 40.0% | |
| ACTGTCCATTGAACGTGATT+AGG | + | chr5_1:70603271-70603290 | Msa0746970:intron | 40.0% | |
| ACACCTGAAAAATCATGGTG+TGG | + | chr5_1:70603383-70603402 | Msa0746970:intron | 40.0% | |
| AGCGGATGATTAATGATTGG+TGG | + | chr5_1:70603418-70603437 | Msa0746970:intron | 40.0% | |
| ! | GGTTAGTTACGTTTCATGGA+TGG | - | chr5_1:70603464-70603483 | None:intergenic | 40.0% |
| !!! | GCTGGTTGATTTTTTCCCAT+TGG | - | chr5_1:70603708-70603727 | None:intergenic | 40.0% |
| AAAATCAACCAGCTAGACCA+AGG | + | chr5_1:70603715-70603734 | Msa0746970:CDS | 40.0% | |
| GTAGTATCAGTAGCTGTAAG+TGG | + | chr5_1:70603831-70603850 | Msa0746970:three_prime_UTR | 40.0% | |
| GGCTGTTATGTAATCATGGA+TGG | + | chr5_1:70604055-70604074 | Msa0746970:three_prime_UTR | 40.0% | |
| ATCCGAAGAGGAAAGAGAGA+GGG | - | chr5_1:70598682-70598701 | None:intergenic | 45.0% | |
| TATCCGAAGAGGAAAGAGAG+AGG | - | chr5_1:70598683-70598702 | None:intergenic | 45.0% | |
| AATGATGCTGGATCACCTCA+GGG | + | chr5_1:70598841-70598860 | Msa0746970:CDS | 45.0% | |
| TTACTTGCGGGTCATGGATT+CGG | + | chr5_1:70598869-70598888 | Msa0746970:CDS | 45.0% | |
| TGGACCTTCCAAGAACAACT+AGG | - | chr5_1:70598912-70598931 | None:intergenic | 45.0% | |
| AGGACAAGAATTTCCACGCT+TGG | - | chr5_1:70598932-70598951 | None:intergenic | 45.0% | |
| CACTCTACATAGGACCTGTT+TGG | - | chr5_1:70599645-70599664 | None:intergenic | 45.0% | |
| AGAGCAAGGTTTCAATCCCA+TGG | - | chr5_1:70599999-70600018 | None:intergenic | 45.0% | |
| TCATACACTCTCCTAGCTCA+AGG | - | chr5_1:70600223-70600242 | None:intergenic | 45.0% | |
| ! | ACTGATAAGCTAGCGGATAG+TGG | + | chr5_1:70600284-70600303 | Msa0746970:intron | 45.0% |
| !! | TGTAGAGGGGTTAGTTCCTT+GGG | - | chr5_1:70600734-70600753 | None:intergenic | 45.0% |
| AAGGAACTAACCCCTCTACA+GGG | + | chr5_1:70600734-70600753 | Msa0746970:CDS | 45.0% | |
| !! | GGATCTAAATTTGCTGCTGG+TGG | + | chr5_1:70600794-70600813 | Msa0746970:CDS | 45.0% |
| !! | TAAATTTGCTGCTGGTGGGT+CGG | + | chr5_1:70600799-70600818 | Msa0746970:CDS | 45.0% |
| GGATGGACACCTCAGAATTA+TGG | + | chr5_1:70600936-70600955 | Msa0746970:intron | 45.0% | |
| GACACCTCAGAATTATGGAG+TGG | + | chr5_1:70600941-70600960 | Msa0746970:CDS | 45.0% | |
| TAGGCCACTCCATAATTCTG+AGG | - | chr5_1:70600948-70600967 | None:intergenic | 45.0% | |
| ! | GCCTAGCATGCGCATAATTT+TGG | + | chr5_1:70600963-70600982 | Msa0746970:CDS | 45.0% |
| ! | CGGACAGATTTGTGTGCTTT+TGG | - | chr5_1:70600994-70601013 | None:intergenic | 45.0% |
| ACACAAATCTGTCCGGGATA+TGG | + | chr5_1:70600999-70601018 | Msa0746970:CDS | 45.0% | |
| ! | CTGTCCGGGATATGGATTTT+AGG | + | chr5_1:70601007-70601026 | Msa0746970:CDS | 45.0% |
| GGCGCCAAATAGAAATGGTT+TGG | - | chr5_1:70601551-70601570 | None:intergenic | 45.0% | |
| TGAACGGCGCCAAATAGAAA+TGG | - | chr5_1:70601556-70601575 | None:intergenic | 45.0% | |
| CTATTTGGCGCCGTTCAAAA+AGG | + | chr5_1:70601559-70601578 | Msa0746970:CDS | 45.0% | |
| AGGGGATAAGTCTCTTACAG+CGG | + | chr5_1:70601694-70601713 | Msa0746970:intron | 45.0% | |
| ! | CGGTTTGGGATATGAGTTCA+TGG | + | chr5_1:70601714-70601733 | Msa0746970:CDS | 45.0% |
| GGAACAAAATAGGGCACAAG+AGG | + | chr5_1:70601735-70601754 | Msa0746970:CDS | 45.0% | |
| ATGTTGCGATAGTTGTACCG+AGG | - | chr5_1:70602760-70602779 | None:intergenic | 45.0% | |
| CGGTACAACTATCGCAACAT+TGG | + | chr5_1:70602760-70602779 | Msa0746970:CDS | 45.0% | |
| TATGGATGTGTGCGAGCATA+TGG | - | chr5_1:70603074-70603093 | None:intergenic | 45.0% | |
| TCGTGCCTAATCACGTTCAA+TGG | - | chr5_1:70603279-70603298 | None:intergenic | 45.0% | |
| ! | TCGAGAACTCTGATTCGTTC+TGG | + | chr5_1:70603676-70603695 | Msa0746970:CDS | 45.0% |
| ! | CGAGAACTCTGATTCGTTCT+GGG | + | chr5_1:70603677-70603696 | Msa0746970:CDS | 45.0% |
| ! | GAGAACTCTGATTCGTTCTG+GGG | + | chr5_1:70603678-70603697 | Msa0746970:CDS | 45.0% |
| !! | TTCGTTCTGGGGATTTCCAA+TGG | + | chr5_1:70603689-70603708 | Msa0746970:CDS | 45.0% |
| !! | TCGTTCTGGGGATTTCCAAT+GGG | + | chr5_1:70603690-70603709 | Msa0746970:CDS | 45.0% |
| GGTTTAAACCTTGGTCTAGC+TGG | - | chr5_1:70603726-70603745 | None:intergenic | 45.0% | |
| GATTGAGGGTCTCTCATCAT+TGG | - | chr5_1:70603747-70603766 | None:intergenic | 45.0% | |
| CGAACAACAACACATAGACG+CGG | - | chr5_1:70603804-70603823 | None:intergenic | 45.0% | |
| !!! | AAATATCATATTTAATTTAA+TGG | + | chr5_1:70602410-70602429 | Msa0746970:intron | 5.0% |
| !!! | AATATCATATTTAATTTAAT+GGG | + | chr5_1:70602411-70602430 | Msa0746970:intron | 5.0% |
| GACCCTCTCTCTTTCCTCTT+CGG | + | chr5_1:70598677-70598696 | Msa0746970:five_prime_UTR | 50.0% | |
| GAATGATGCTGGATCACCTC+AGG | + | chr5_1:70598840-70598859 | Msa0746970:CDS | 50.0% | |
| ATCCATGACCCGCAAGTAAC+CGG | - | chr5_1:70598868-70598887 | None:intergenic | 50.0% | |
| AGAAGCTGAGGAAGGTGATC+CGG | + | chr5_1:70599889-70599908 | Msa0746970:CDS | 50.0% | |
| !! | CTGTAGAGGGGTTAGTTCCT+TGG | - | chr5_1:70600735-70600754 | None:intergenic | 50.0% |
| CAAGGAACTAACCCCTCTAC+AGG | + | chr5_1:70600733-70600752 | Msa0746970:CDS | 50.0% | |
| CTAACCCCTCTACAGGGTAT+TGG | + | chr5_1:70600740-70600759 | Msa0746970:CDS | 50.0% | |
| GGAACCAATACCCTGTAGAG+GGG | - | chr5_1:70600747-70600766 | None:intergenic | 50.0% | |
| GGGAACCAATACCCTGTAGA+GGG | - | chr5_1:70600748-70600767 | None:intergenic | 50.0% | |
| TGGGAACCAATACCCTGTAG+AGG | - | chr5_1:70600749-70600768 | None:intergenic | 50.0% | |
| CTGATGGTTCAGCGAGAATC+TGG | + | chr5_1:70601319-70601338 | Msa0746970:CDS | 50.0% | |
| TGGTTCAGCGAGAATCTGGA+AGG | + | chr5_1:70601323-70601342 | Msa0746970:CDS | 50.0% | |
| GTATTTCCCGTCGTGGCTAA+CGG | - | chr5_1:70601789-70601808 | None:intergenic | 50.0% | |
| !! | GAGAAAGGTATTTCCCGTCG+TGG | - | chr5_1:70601796-70601815 | None:intergenic | 50.0% |
| CAATGCTCCCCATTCTACTG+AGG | - | chr5_1:70603005-70603024 | None:intergenic | 50.0% | |
| ! | CTCAGTAGAATGGGGAGCAT+TGG | + | chr5_1:70603003-70603022 | Msa0746970:CDS | 50.0% |
| AGACGCGGTCACATATCTAC+TGG | - | chr5_1:70603789-70603808 | None:intergenic | 50.0% | |
| GTTCTTGGAAGGTCCAAGCG+TGG | + | chr5_1:70598916-70598935 | Msa0746970:CDS | 55.0% | |
| GGGTGCACAGCAATAGCAAC+CGG | - | chr5_1:70599911-70599930 | None:intergenic | 55.0% | |
| GCTATTGCTGTGCACCCTAG+CGG | + | chr5_1:70599914-70599933 | Msa0746970:CDS | 55.0% | |
| TTGCGAGACAGAGTGGTCAC+AGG | - | chr5_1:70601363-70601382 | None:intergenic | 55.0% | |
| GACCACTCTGTCTCGCAACT+CGG | + | chr5_1:70601365-70601384 | Msa0746970:CDS | 55.0% | |
| TACCGAGTTGCGAGACAGAG+TGG | - | chr5_1:70601370-70601389 | None:intergenic | 55.0% | |
| GTAATGGCCGTTAGCCACGA+CGG | + | chr5_1:70601779-70601798 | Msa0746970:CDS | 55.0% | |
| TAATGGCCGTTAGCCACGAC+GGG | + | chr5_1:70601780-70601799 | Msa0746970:CDS | 55.0% | |
| TGCTGGATCACCTCAGGGTC+CGG | + | chr5_1:70598846-70598865 | Msa0746970:CDS | 60.0% | |
| CCTCAGGGTCCGGTTACTTG+CGG | + | chr5_1:70598856-70598875 | Msa0746970:CDS | 60.0% | |
| CTCAGGGTCCGGTTACTTGC+GGG | + | chr5_1:70598857-70598876 | Msa0746970:CDS | 60.0% | |
| GTCCGGTTACTTGCGGGTCA+TGG | + | chr5_1:70598863-70598882 | Msa0746970:CDS | 60.0% | |
| CCGCAAGTAACCGGACCCTG+AGG | - | chr5_1:70598859-70598878 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 70598608 | 70604142 | 70598608 | ID=Msa0746970;Name=Msa0746970 |
| chr5_1 | mRNA | 70598608 | 70604142 | 70598608 | ID=Msa0746970-mRNA-1;Parent=Msa0746970;Name=Msa0746970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=227|1|1|1|1|1|10|342|392 |
| chr5_1 | exon | 70598608 | 70599011 | 70598608 | ID=Msa0746970-mRNA-1:exon:20774;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70599875 | 70599975 | 70599875 | ID=Msa0746970-mRNA-1:exon:20775;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70600688 | 70600820 | 70600688 | ID=Msa0746970-mRNA-1:exon:20776;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70600937 | 70601028 | 70600937 | ID=Msa0746970-mRNA-1:exon:20777;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70601287 | 70601386 | 70601287 | ID=Msa0746970-mRNA-1:exon:20778;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70601508 | 70601580 | 70601508 | ID=Msa0746970-mRNA-1:exon:20779;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70601696 | 70601816 | 70601696 | ID=Msa0746970-mRNA-1:exon:20780;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70602682 | 70602801 | 70602682 | ID=Msa0746970-mRNA-1:exon:20781;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70602988 | 70603058 | 70602988 | ID=Msa0746970-mRNA-1:exon:20782;Parent=Msa0746970-mRNA-1 |
| chr5_1 | exon | 70603610 | 70604142 | 70603610 | ID=Msa0746970-mRNA-1:exon:20783;Parent=Msa0746970-mRNA-1 |
| chr5_1 | five_prime_UTR | 70598608 | 70598834 | 70598608 | ID=Msa0746970-mRNA-1:five_prime_utr;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70598835 | 70599011 | 70598835 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70599875 | 70599975 | 70599875 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70600688 | 70600820 | 70600688 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70600937 | 70601028 | 70600937 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70601287 | 70601386 | 70601287 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70601508 | 70601580 | 70601508 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70601696 | 70601816 | 70601696 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70602682 | 70602801 | 70602682 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70602988 | 70603058 | 70602988 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | CDS | 70603610 | 70603800 | 70603610 | ID=Msa0746970-mRNA-1:cds;Parent=Msa0746970-mRNA-1 |
| chr5_1 | three_prime_UTR | 70603801 | 70604142 | 70603801 | ID=Msa0746970-mRNA-1:three_prime_utr;Parent=Msa0746970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
