Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176030 | XP_013469319.1 | 98.724 | 392 | 5 | 0 | 1 | 392 | 1 | 392 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176030 | sp|Q8GYE0|PHF1_ARATH | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 5.49e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176030 | A0A072VNK4 | 98.724 | 392 | 5 | 0 | 1 | 392 | 1 | 392 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa0176030 | 0.816141 | 6.442828e-52 | -8.615850e-47 |
| Msa0015090 | Msa0176030 | 0.827774 | 1.299034e-54 | -8.615850e-47 |
| Msa0035300 | Msa0176030 | 0.928642 | 2.163870e-92 | -8.615850e-47 |
| Msa0049750 | Msa0176030 | 0.817442 | 3.291238e-52 | -8.615850e-47 |
| Msa0061500 | Msa0176030 | 0.810450 | 1.145528e-50 | -8.615850e-47 |
| Msa0071250 | Msa0176030 | 0.804595 | 2.003057e-49 | -8.615850e-47 |
| Msa0092410 | Msa0176030 | 0.806561 | 7.747765e-50 | -8.615850e-47 |
| Msa0111080 | Msa0176030 | 0.809488 | 1.846096e-50 | -8.615850e-47 |
| Msa0117520 | Msa0176030 | 0.801598 | 8.349998e-49 | -8.615850e-47 |
| Msa0129350 | Msa0176030 | 0.941454 | 4.042949e-101 | -8.615850e-47 |
| Msa0135410 | Msa0176030 | 0.814697 | 1.349851e-51 | -8.615850e-47 |
| Msa0138020 | Msa0176030 | 0.815432 | 9.274801e-52 | -8.615850e-47 |
| Msa0152560 | Msa0176030 | 0.826260 | 2.990812e-54 | -8.615850e-47 |
| Msa0154920 | Msa0176030 | 0.823278 | 1.509586e-53 | -8.615850e-47 |
| Msa0176030 | Msa0187490 | 0.801469 | 8.872039e-49 | -8.615850e-47 |
| Msa0176030 | Msa0189610 | 0.807324 | 5.342619e-50 | -8.615850e-47 |
| Msa0176030 | Msa0202930 | 0.808138 | 3.588231e-50 | -8.615850e-47 |
| Msa0176030 | Msa0227360 | 0.800615 | 1.326098e-48 | -8.615850e-47 |
| Msa0176030 | Msa0240270 | 0.802437 | 5.613291e-49 | -8.615850e-47 |
| Msa0176030 | Msa0262370 | 0.820998 | 5.098718e-53 | -8.615850e-47 |
| Msa0176030 | Msa0269560 | 0.805016 | 1.636156e-49 | -8.615850e-47 |
| Msa0176030 | Msa0278580 | 0.815408 | 9.386384e-52 | -8.615850e-47 |
| Msa0176030 | Msa0284450 | 0.811338 | 7.358399e-51 | -8.615850e-47 |
| Msa0176030 | Msa0299660 | 0.808657 | 2.780955e-50 | -8.615850e-47 |
| Msa0176030 | Msa0302840 | 0.808129 | 3.603778e-50 | -8.615850e-47 |
| Msa0176030 | Msa0309270 | 0.813809 | 2.120861e-51 | -8.615850e-47 |
| Msa0176030 | Msa0317960 | 0.804114 | 2.523047e-49 | -8.615850e-47 |
| Msa0176030 | Msa0319290 | 0.813553 | 2.415393e-51 | -8.615850e-47 |
| Msa0176030 | Msa0347750 | 0.804620 | 1.978964e-49 | -8.615850e-47 |
| Msa0176030 | Msa0371950 | 0.825623 | 4.237176e-54 | -8.615850e-47 |
| Msa0176030 | Msa0376600 | 0.801605 | 8.320321e-49 | -8.615850e-47 |
| Msa0176030 | Msa0388730 | 0.821320 | 4.299771e-53 | -8.615850e-47 |
| Msa0176030 | Msa0403490 | 0.812511 | 4.086724e-51 | -8.615850e-47 |
| Msa0176030 | Msa0417330 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa0176030 | Msa0422180 | 0.802042 | 6.767138e-49 | -8.615850e-47 |
| Msa0176030 | Msa0448610 | 0.804982 | 1.663174e-49 | -8.615850e-47 |
| Msa0176030 | Msa0481280 | 0.807098 | 5.967283e-50 | -8.615850e-47 |
| Msa0176030 | Msa0482940 | 0.800913 | 1.153223e-48 | -8.615850e-47 |
| Msa0176030 | Msa0518170 | 0.817296 | 3.550166e-52 | -8.615850e-47 |
| Msa0176030 | Msa0566350 | 0.820958 | 5.208813e-53 | -8.615850e-47 |
| Msa0176030 | Msa0566750 | 0.817454 | 3.269810e-52 | -8.615850e-47 |
| Msa0176030 | Msa0665080 | 0.803583 | 3.253381e-49 | -8.615850e-47 |
| Msa0176030 | Msa0705990 | 0.831842 | 1.327015e-55 | -8.615850e-47 |
| Msa0176030 | Msa0742150 | 0.802285 | 6.031276e-49 | -8.615850e-47 |
| Msa0176030 | Msa0746970 | 0.952042 | 5.660431e-110 | -8.615850e-47 |
| Msa0176030 | Msa0749440 | 0.800420 | 1.453320e-48 | -8.615850e-47 |
| Msa0176030 | Msa0750850 | 0.818777 | 1.642276e-52 | -8.615850e-47 |
| Msa0176030 | Msa0763920 | 0.806469 | 8.101644e-50 | -8.615850e-47 |
| Msa0176030 | Msa0812950 | 0.837042 | 6.565354e-57 | -8.615850e-47 |
| Msa0176030 | Msa0844110 | 0.803695 | 3.083743e-49 | -8.615850e-47 |
| Msa0176030 | Msa0861470 | 0.806440 | 8.216414e-50 | -8.615850e-47 |
| Msa0176030 | Msa0861570 | 0.813915 | 2.009630e-51 | -8.615850e-47 |
| Msa0176030 | Msa0862280 | 0.800358 | 1.496509e-48 | -8.615850e-47 |
| Msa0176030 | Msa0877710 | 0.817646 | 2.960589e-52 | -8.615850e-47 |
| Msa0176030 | Msa0935770 | 0.801299 | 9.612740e-49 | -8.615850e-47 |
| Msa0176030 | Msa0972810 | 0.815710 | 8.042883e-52 | -8.615850e-47 |
| Msa0176030 | Msa0992600 | 0.806996 | 6.271421e-50 | -8.615850e-47 |
| Msa0176030 | Msa1071320 | 0.816622 | 5.029871e-52 | -8.615850e-47 |
| Msa0176030 | Msa1089460 | 0.800534 | 1.378050e-48 | -8.615850e-47 |
| Msa0176030 | Msa1107200 | 0.805374 | 1.377042e-49 | -8.615850e-47 |
| Msa0176030 | Msa1115280 | 0.802646 | 5.082913e-49 | -8.615850e-47 |
| Msa0176030 | Msa1138530 | 0.800301 | 1.537179e-48 | -8.615850e-47 |
| Msa0176030 | Msa1143020 | 0.800503 | 1.397738e-48 | -8.615850e-47 |
| Msa0176030 | Msa1144040 | 0.803628 | 3.183681e-49 | -8.615850e-47 |
| Msa0176030 | Msa1207310 | 0.815060 | 1.121682e-51 | -8.615850e-47 |
| Msa0176030 | Msa1208380 | 0.811789 | 5.871950e-51 | -8.615850e-47 |
| Msa0176030 | Msa1209190 | 0.803434 | 3.492582e-49 | -8.615850e-47 |
| Msa0176030 | Msa1209860 | 0.808110 | 3.637318e-50 | -8.615850e-47 |
| Msa0176030 | Msa1319130 | 0.808665 | 2.770637e-50 | -8.615850e-47 |
| Msa0176030 | Msa1355890 | 0.829207 | 5.855946e-55 | -8.615850e-47 |
| Msa0176030 | Msa1370590 | 0.800301 | 1.537179e-48 | -8.615850e-47 |
| Msa0176030 | Msa1371940 | 0.804667 | 1.935143e-49 | -8.615850e-47 |
| Msa0176030 | Msa1372280 | 0.806507 | 7.954322e-50 | -8.615850e-47 |
| Msa0176030 | Msa1384100 | 0.801085 | 1.063289e-48 | -8.615850e-47 |
| Msa0176030 | Msa1428780 | 0.806604 | 7.587264e-50 | -8.615850e-47 |
| Msa0176030 | Msa1430130 | 0.817354 | 3.444106e-52 | -8.615850e-47 |
| Msa0176030 | Msa1437730 | 0.801237 | 9.900382e-49 | -8.615850e-47 |
| Msa0176030 | Msa1438840 | 0.835776 | 1.378321e-56 | -8.615850e-47 |
| Msa0176030 | Msa1442790 | 0.818454 | 1.943517e-52 | -8.615850e-47 |
| Msa0176030 | Msa1444120 | 0.806057 | 9.893097e-50 | -8.615850e-47 |
| Msa0176030 | Msa1460750 | 0.816848 | 4.474281e-52 | -8.615850e-47 |
| Msa0176030 | Msa1462360 | 0.813511 | 2.466770e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176030 | MtrunA17_Chr1g0197641 | 98.724 | 392 | 5 | 0 | 1 | 392 | 1 | 392 | 0.0 | 800 |
| Msa0176030 | MtrunA17_Chr4g0043971 | 32.399 | 321 | 201 | 7 | 39 | 348 | 79 | 394 | 2.38e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176030 | AT3G52190.1 | 64.267 | 375 | 129 | 3 | 3 | 373 | 4 | 377 | 5.58e-180 | 506 |
| Msa0176030 | AT5G50650.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.55e-42 | 153 |
| Msa0176030 | AT5G50550.1 | 32.673 | 303 | 189 | 9 | 39 | 335 | 65 | 358 | 1.55e-42 | 153 |
| Msa0176030 | AT2G01470.1 | 32.993 | 294 | 183 | 8 | 41 | 327 | 76 | 362 | 3.56e-39 | 144 |
Find 134 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAAATTTCTGAGAATT+TGG | 0.127504 | 1_4:+62224292 | Msa0176030:five_prime_UTR |
| GCCTAGCATGCGCATAATTT+TGG | 0.182728 | 1_4:+62226443 | Msa0176030:CDS |
| ATGAGTTCATGGAACAAAAT+AGG | 0.220715 | 1_4:+62227204 | Msa0176030:CDS |
| GGAACCAAACCATTTCTATT+TGG | 0.223219 | 1_4:+62227023 | Msa0176030:CDS |
| CGGACAGATTTGTGTGCTTT+TGG | 0.240942 | 1_4:-62226471 | None:intergenic |
| TCGAGAACTCTGATTCGTTC+TGG | 0.241586 | 1_4:+62229155 | Msa0176030:CDS |
| AATCTCAACCTAGTTGTTCT+TGG | 0.269966 | 1_4:+62224381 | Msa0176030:CDS |
| CTCAGCTTCTAACACAAAAT+TGG | 0.284131 | 1_4:-62225356 | None:intergenic |
| ATATCACAATAATGGCCTTT+TGG | 0.288267 | 1_4:-62229447 | None:intergenic |
| AGATAACCTTTCCAATCTTT+AGG | 0.319043 | 1_4:-62228522 | None:intergenic |
| ACACAAATCTGTCCGGGATA+TGG | 0.322553 | 1_4:+62226479 | Msa0176030:CDS |
| GATTTACGACTTAAGACATT+TGG | 0.331779 | 1_4:+62229556 | Msa0176030:three_prime_UTR |
| CGAGAACTCTGATTCGTTCT+GGG | 0.331945 | 1_4:+62229156 | Msa0176030:CDS |
| GTAGACAAAGAAACGGTTAT+AGG | 0.338185 | 1_4:-62224459 | None:intergenic |
| CTGATGGTTCAGCGAGAATC+TGG | 0.344529 | 1_4:+62226799 | Msa0176030:CDS |
| GGATGGACACCTCAGAATTA+TGG | 0.345586 | 1_4:+62226416 | Msa0176030:intron |
| AAATGGTTTGGTTCCATCCT+TGG | 0.346387 | 1_4:-62227015 | None:intergenic |
| CTGTAGAGGGGTTAGTTCCT+TGG | 0.349847 | 1_4:-62226212 | None:intergenic |
| CTCATCATTGGTTTAAACCT+TGG | 0.350046 | 1_4:-62229211 | None:intergenic |
| CTCAGGGTCCGGTTACTTGC+GGG | 0.357610 | 1_4:+62224337 | Msa0176030:CDS |
| CTATTTGGCGCCGTTCAAAA+AGG | 0.360925 | 1_4:+62227038 | Msa0176030:CDS |
| TTCTTTGTCTACTTCCCCTT+TGG | 0.362793 | 1_4:+62224470 | Msa0176030:CDS |
| CTGTTTACACATGTAGAATT+AGG | 0.365054 | 1_4:+62229359 | Msa0176030:three_prime_UTR |
| CACTAAAAGTAATACATGTC+TGG | 0.366135 | 1_4:-62226246 | None:intergenic |
| ATTTACGACTTAAGACATTT+GGG | 0.366926 | 1_4:+62229557 | Msa0176030:three_prime_UTR |
| GACCCTCTCTCTTTCCTCTT+CGG | 0.369254 | 1_4:+62224157 | Msa0176030:five_prime_UTR |
| TCAATTACATATCACAATAA+TGG | 0.376203 | 1_4:-62229455 | None:intergenic |
| GATTGAGGGTCTCTCATCAT+TGG | 0.378056 | 1_4:-62229223 | None:intergenic |
| ATCCATGACCCGCAAGTAAC+CGG | 0.389128 | 1_4:-62224345 | None:intergenic |
| TGCAGATTGTTTGAGCTCTA+TGG | 0.390492 | 1_4:+62226163 | Msa0176030:intron |
| CTCAATCATTTGATGATCAA+TGG | 0.390908 | 1_4:+62229239 | Msa0176030:CDS |
| AATGAGCGCAAGTTGTTTGT+TGG | 0.392138 | 1_4:-62224134 | None:intergenic |
| TAAGTCTCTTACAGCGGTTT+GGG | 0.395510 | 1_4:+62227179 | Msa0176030:CDS |
| TTACTTGCGGGTCATGGATT+CGG | 0.400800 | 1_4:+62224349 | Msa0176030:CDS |
| ATAAGTCTCTTACAGCGGTT+TGG | 0.404946 | 1_4:+62227178 | Msa0176030:CDS |
| TGAGTTCATGGAACAAAATA+GGG | 0.405250 | 1_4:+62227205 | Msa0176030:CDS |
| TCAATCATTTGATGATCAAT+GGG | 0.405468 | 1_4:+62229240 | Msa0176030:CDS |
| AACTGAATGTACCTAAAGAT+TGG | 0.410490 | 1_4:+62228511 | Msa0176030:CDS |
| GGTTTAAACCTTGGTCTAGC+TGG | 0.411531 | 1_4:-62229202 | None:intergenic |
| TGAAATATGAATTCAAAGTT+CGG | 0.417229 | 1_4:-62224275 | None:intergenic |
| GGCGCCAAATAGAAATGGTT+TGG | 0.423691 | 1_4:-62227027 | None:intergenic |
| CGGTTTGGGATATGAGTTCA+TGG | 0.428050 | 1_4:+62227193 | Msa0176030:CDS |
| GTCCGGTTACTTGCGGGTCA+TGG | 0.431039 | 1_4:+62224343 | Msa0176030:CDS |
| GGTGTAGTCTCTTGCTATAA+TGG | 0.431141 | 1_4:-62228215 | None:intergenic |
| TGTAGAGGGGTTAGTTCCTT+GGG | 0.433022 | 1_4:-62226211 | None:intergenic |
| TGAACGGCGCCAAATAGAAA+TGG | 0.434674 | 1_4:-62227032 | None:intergenic |
| AGGACAAGAATTTCCACGCT+TGG | 0.440119 | 1_4:-62224409 | None:intergenic |
| GCAAGTTGTTTGTTGGATAG+TGG | 0.441867 | 1_4:-62224127 | None:intergenic |
| ACTTACAACCTCAGTAGAAT+GGG | 0.444696 | 1_4:+62228473 | Msa0176030:CDS |
| GAGAAAATCTGAAGCAAAGC+AGG | 0.450891 | 1_4:-62224429 | None:intergenic |
| TGCTGGATCACCTCAGGGTC+CGG | 0.464290 | 1_4:+62224326 | Msa0176030:CDS |
| CAAATTTCTGAGAATTTGGA+TGG | 0.465035 | 1_4:+62224296 | Msa0176030:exon |
| GGACAAGAATTTCCACGCTT+GGG | 0.465181 | 1_4:-62224408 | None:intergenic |
| TAGACAAAGAAACGGTTATA+GGG | 0.466115 | 1_4:-62224458 | None:intergenic |
| GAATGATGCTGGATCACCTC+AGG | 0.466193 | 1_4:+62224320 | Msa0176030:CDS |
| TACTTACAACCTCAGTAGAA+TGG | 0.468911 | 1_4:+62228472 | Msa0176030:CDS |
| GGGTGCACAGCAATAGCAAC+CGG | 0.474667 | 1_4:-62225388 | None:intergenic |
| CAAGGAACTAACCCCTCTAC+AGG | 0.483255 | 1_4:+62226213 | Msa0176030:CDS |
| TTCGTTCTGGGGATTTCCAA+TGG | 0.491126 | 1_4:+62229168 | Msa0176030:CDS |
| CTCAGTAGAATGGGGAGCAT+TGG | 0.494832 | 1_4:+62228482 | Msa0176030:CDS |
| CTAACCCCTCTACAGGGTAT+TGG | 0.495022 | 1_4:+62226220 | Msa0176030:CDS |
| ATATAGGTTCTTACAGAGAA+AGG | 0.496610 | 1_4:-62227287 | None:intergenic |
| CAAAAGCACACAAATCTGTC+CGG | 0.496650 | 1_4:+62226472 | Msa0176030:CDS |
| CATTGATCATCAAATGATTG+AGG | 0.497207 | 1_4:-62229238 | None:intergenic |
| GGATCTAAATTTGCTGCTGG+TGG | 0.498037 | 1_4:+62226274 | Msa0176030:CDS |
| CCTCAGGGTCCGGTTACTTG+CGG | 0.499353 | 1_4:+62224336 | Msa0176030:CDS |
| CGGTACAACTATCGCAACAT+TGG | 0.505371 | 1_4:+62228239 | Msa0176030:CDS |
| TCGTTCTGGGGATTTCCAAT+GGG | 0.509999 | 1_4:+62229169 | Msa0176030:CDS |
| CTAGCTTCAACTTCTACTGA+TGG | 0.515435 | 1_4:+62226783 | Msa0176030:CDS |
| GATGGATCTAAATTTGCTGC+TGG | 0.516767 | 1_4:+62226271 | Msa0176030:CDS |
| ATTGATCATCAAATGATTGA+GGG | 0.517917 | 1_4:-62229237 | None:intergenic |
| TGCAGAGTGGCAGATATACT+TGG | 0.519271 | 1_4:+62229084 | Msa0176030:intron |
| TCCAAAATTATGCGCATGCT+AGG | 0.524567 | 1_4:-62226444 | None:intergenic |
| ACTAAAAGTAATACATGTCT+GGG | 0.525288 | 1_4:-62226245 | None:intergenic |
| AGAAGCTGAGGAAGGTGATC+CGG | 0.530482 | 1_4:+62225369 | Msa0176030:CDS |
| GAGAACTCTGATTCGTTCTG+GGG | 0.533273 | 1_4:+62229157 | Msa0176030:CDS |
| TGGATTTCTGTCCTAGTGAA+AGG | 0.533688 | 1_4:+62228259 | Msa0176030:CDS |
| TAATGGCCGTTAGCCACGAC+GGG | 0.539256 | 1_4:+62227259 | Msa0176030:CDS |
| TCAACCTAGTTGTTCTTGGA+AGG | 0.540778 | 1_4:+62224385 | Msa0176030:CDS |
| AGACGCGGTCACATATCTAC+TGG | 0.544878 | 1_4:-62229265 | None:intergenic |
| ATTTGGATGGAGAATGATGC+TGG | 0.544930 | 1_4:+62224309 | Msa0176030:exon |
| GGCTGTTATGTAATCATGGA+TGG | 0.547222 | 1_4:+62229534 | Msa0176030:three_prime_UTR |
| TGTACCTAAAATCCATATCC+CGG | 0.552105 | 1_4:-62226491 | None:intergenic |
| GATCTAAATTTGCTGCTGGT+GGG | 0.552966 | 1_4:+62226275 | Msa0176030:CDS |
| GTATTTCCCGTCGTGGCTAA+CGG | 0.556419 | 1_4:-62227265 | None:intergenic |
| TCTATGTGTTGTTGTTCGAT+TGG | 0.557849 | 1_4:+62229285 | Msa0176030:three_prime_UTR |
| TGGGCCTTCCAAGAACAACT+AGG | 0.569955 | 1_4:-62224389 | None:intergenic |
| TTGAGGCTGTTATGTAATCA+TGG | 0.570101 | 1_4:+62229530 | Msa0176030:three_prime_UTR |
| TAGAAAGTCTGCTTCAGTAA+TGG | 0.572648 | 1_4:+62227242 | Msa0176030:CDS |
| GGAACAAAATAGGGCACAAG+AGG | 0.574914 | 1_4:+62227214 | Msa0176030:CDS |
| AGAAACGGTTATAGGGTCAA+AGG | 0.575993 | 1_4:-62224451 | None:intergenic |
| GTGGTATCAAAATTCAACTC+AGG | 0.578946 | 1_4:+62229329 | Msa0176030:three_prime_UTR |
| AAAAGCACACAAATCTGTCC+GGG | 0.581294 | 1_4:+62226473 | Msa0176030:CDS |
| CACATAAAATCATCACCGCT+AGG | 0.583548 | 1_4:-62225409 | None:intergenic |
| GACCACTCTGTCTCGCAACT+CGG | 0.583764 | 1_4:+62226845 | Msa0176030:CDS |
| TAAATTTGCTGCTGGTGGGT+CGG | 0.586472 | 1_4:+62226279 | Msa0176030:CDS |
| GTGGATATTTACCTTTCACT+AGG | 0.590688 | 1_4:-62228270 | None:intergenic |
| ATCCGAAGAGGAAAGAGAGA+GGG | 0.593233 | 1_4:-62224159 | None:intergenic |
| GTAGTATCAGTAGCTGTAAG+TGG | 0.593314 | 1_4:+62229310 | Msa0176030:three_prime_UTR |
| GGGAACCAATACCCTGTAGA+GGG | 0.595092 | 1_4:-62226225 | None:intergenic |
| AAATTTGCAAGTTGAGCTTG+AGG | 0.604263 | 1_4:+62229513 | Msa0176030:three_prime_UTR |
| AGGGGATAAGTCTCTTACAG+CGG | 0.605985 | 1_4:+62227173 | Msa0176030:intron |
| TTTATGTGCTCTTTGAGCAA+TGG | 0.610268 | 1_4:+62225424 | Msa0176030:CDS |
| TTGCGAGACAGAGTGGTCAC+AGG | 0.610478 | 1_4:-62226840 | None:intergenic |
| AGGGGAAGTAGACAAAGAAA+CGG | 0.613448 | 1_4:-62224466 | None:intergenic |
| AATGTACCTAAAGATTGGAA+AGG | 0.615590 | 1_4:+62228516 | Msa0176030:CDS |
| ACATAAAATCATCACCGCTA+GGG | 0.616388 | 1_4:-62225408 | None:intergenic |
| TATCCGAAGAGGAAAGAGAG+AGG | 0.616703 | 1_4:-62224160 | None:intergenic |
| TTATATAGAAATATCCGAAG+AGG | 0.619452 | 1_4:-62224171 | None:intergenic |
| TGGGAACCAATACCCTGTAG+AGG | 0.620085 | 1_4:-62226226 | None:intergenic |
| TTTGTGTTAGAAGCTGAGGA+AGG | 0.624346 | 1_4:+62225361 | Msa0176030:CDS |
| GTAATGGCCGTTAGCCACGA+CGG | 0.633207 | 1_4:+62227258 | Msa0176030:CDS |
| TTTACGACTTAAGACATTTG+GGG | 0.637607 | 1_4:+62229558 | Msa0176030:three_prime_UTR |
| AGAATCTGGAAGGTTGAAGA+CGG | 0.646935 | 1_4:+62226813 | Msa0176030:CDS |
| GAGAAAGGTATTTCCCGTCG+TGG | 0.646943 | 1_4:-62227272 | None:intergenic |
| AAACATGAAACTGTTGCCCA+AGG | 0.647320 | 1_4:+62226195 | Msa0176030:CDS |
| GTTCTTGGAAGGCCCAAGCG+TGG | 0.648572 | 1_4:+62224396 | Msa0176030:CDS |
| AAAATCAACCAGCTAGACCA+AGG | 0.649835 | 1_4:+62229194 | Msa0176030:CDS |
| CAATGCTCCCCATTCTACTG+AGG | 0.662088 | 1_4:-62228481 | None:intergenic |
| TAGGCCACTCCATAATTCTG+AGG | 0.667952 | 1_4:-62226425 | None:intergenic |
| TGGTTCAGCGAGAATCTGGA+AGG | 0.668492 | 1_4:+62226803 | Msa0176030:CDS |
| TACCGAGTTGCGAGACAGAG+TGG | 0.677017 | 1_4:-62226847 | None:intergenic |
| AAGGAACTAACCCCTCTACA+GGG | 0.679695 | 1_4:+62226214 | Msa0176030:CDS |
| GACACCTCAGAATTATGGAG+TGG | 0.680012 | 1_4:+62226421 | Msa0176030:CDS |
| AATGATGCTGGATCACCTCA+GGG | 0.681405 | 1_4:+62224321 | Msa0176030:CDS |
| CCGCAAGTAACCGGACCCTG+AGG | 0.684658 | 1_4:-62224336 | None:intergenic |
| GGAACCAATACCCTGTAGAG+GGG | 0.704785 | 1_4:-62226224 | None:intergenic |
| GCTATTGCTGTGCACCCTAG+CGG | 0.708254 | 1_4:+62225394 | Msa0176030:CDS |
| CAATCATTTGATGATCAATG+GGG | 0.709097 | 1_4:+62229241 | Msa0176030:CDS |
| CTTACAACCTCAGTAGAATG+GGG | 0.712274 | 1_4:+62228474 | Msa0176030:CDS |
| ATTGAAGAGGAATACCAAAG+GGG | 0.723778 | 1_4:-62224484 | None:intergenic |
| ATGTTGCGATAGTTGTACCG+AGG | 0.735547 | 1_4:-62228236 | None:intergenic |
| CGAACAACAACACATAGACG+CGG | 0.749005 | 1_4:-62229280 | None:intergenic |
| TATAGCAAGAGACTACACCT+CGG | 0.778640 | 1_4:+62228219 | Msa0176030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATTAATTTTTATAT+TGG | - | chr1_4:62225858-62225877 | None:intergenic | 0.0% |
| !! | TTCTAAACTTAAAATAAAAA+GGG | - | chr1_4:62224580-62224599 | None:intergenic | 10.0% |
| !! | TTTCTAAACTTAAAATAAAA+AGG | - | chr1_4:62224581-62224600 | None:intergenic | 10.0% |
| !! | TATAAGTATTTATGCTATAA+GGG | - | chr1_4:62224687-62224706 | None:intergenic | 15.0% |
| !! | ATATAAGTATTTATGCTATA+AGG | - | chr1_4:62224688-62224707 | None:intergenic | 15.0% |
| !!! | TTTTTTCAAAAATGATATTG+AGG | + | chr1_4:62225896-62225915 | Msa0176030:intron | 15.0% |
| !!! | TTTTTCAAAAATGATATTGA+GGG | + | chr1_4:62225897-62225916 | Msa0176030:intron | 15.0% |
| !!! | AAAAGAAAATTTTGGATAAA+GGG | - | chr1_4:62226956-62226975 | None:intergenic | 15.0% |
| !!! | AAAAAGAAAATTTTGGATAA+AGG | - | chr1_4:62226957-62226976 | None:intergenic | 15.0% |
| !! | TTAAACATATTTAAGTCATT+TGG | + | chr1_4:62227336-62227355 | Msa0176030:intron | 15.0% |
| !!! | TTTATGTGAGTTTTTTAAAA+AGG | + | chr1_4:62227649-62227668 | Msa0176030:intron | 15.0% |
| !!! | ATTAGTCCAATTATTTTAAA+AGG | + | chr1_4:62228069-62228088 | Msa0176030:intron | 15.0% |
| !!! | AGTTTACCTTTTAAAATAAT+TGG | - | chr1_4:62228078-62228097 | None:intergenic | 15.0% |
| !! | ATGATTGATATTAATCAAAA+AGG | - | chr1_4:62228303-62228322 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGTTATATTCTA+TGG | - | chr1_4:62228605-62228624 | None:intergenic | 15.0% |
| !!! | TTAATTTTAAACACAAATTG+TGG | - | chr1_4:62228838-62228857 | None:intergenic | 15.0% |
| !! | TGAAATATGAATTCAAAGTT+CGG | - | chr1_4:62224278-62224297 | None:intergenic | 20.0% |
| !!! | ATTTCAAATTTCTGAGAATT+TGG | + | chr1_4:62224292-62224311 | Msa0176030:five_prime_UTR | 20.0% |
| !! | AAACTATATGTATATGTATG+TGG | + | chr1_4:62224511-62224530 | Msa0176030:intron | 20.0% |
| !! | AACTATATGTATATGTATGT+GGG | + | chr1_4:62224512-62224531 | Msa0176030:intron | 20.0% |
| !!! | TAAACTTTTGTGAGATTATT+AGG | - | chr1_4:62224962-62224981 | None:intergenic | 20.0% |
| !!! | ATTGTCCTTTAAAAAGTTAA+AGG | - | chr1_4:62225623-62225642 | None:intergenic | 20.0% |
| !! | AAAAACTGTGCAAAAAAATT+TGG | - | chr1_4:62225669-62225688 | None:intergenic | 20.0% |
| !! | CAAATTGAATTTGAATTGTT+TGG | + | chr1_4:62225807-62225826 | Msa0176030:intron | 20.0% |
| !!! | ATTAGAATTTAGAATTCTAC+TGG | - | chr1_4:62226572-62226591 | None:intergenic | 20.0% |
| !!! | GGTATAGTCTTTTTTATTTA+AGG | + | chr1_4:62226866-62226885 | Msa0176030:intron | 20.0% |
| !!! | AAAGAAAATTTTGGATAAAG+GGG | - | chr1_4:62226955-62226974 | None:intergenic | 20.0% |
| !!! | AAGAGACAAAAAGAAAATTT+TGG | - | chr1_4:62226964-62226983 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTTGTCTCTTT+AGG | + | chr1_4:62226965-62226984 | Msa0176030:intron | 20.0% |
| !! | AAAACTATAATTGTAAGGAA+AGG | - | chr1_4:62227586-62227605 | None:intergenic | 20.0% |
| !!! | TTTCCTTACAATTATAGTTT+TGG | + | chr1_4:62227585-62227604 | Msa0176030:intron | 20.0% |
| !! | ATTCCAAAACTATAATTGTA+AGG | - | chr1_4:62227591-62227610 | None:intergenic | 20.0% |
| !!! | TAGTTTTGGAATTGTTTATA+AGG | + | chr1_4:62227599-62227618 | Msa0176030:intron | 20.0% |
| !!! | TTTTCATGAAATATTTGAGA+AGG | + | chr1_4:62227702-62227721 | Msa0176030:intron | 20.0% |
| !! | TTTCATGAAATATTTGAGAA+GGG | + | chr1_4:62227703-62227722 | Msa0176030:intron | 20.0% |
| !!! | CATAGTTTTGTAAATATTAG+TGG | + | chr1_4:62228022-62228041 | Msa0176030:intron | 20.0% |
| !! | TAAAAGTTTAAAAAATGCAG+TGG | + | chr1_4:62228363-62228382 | Msa0176030:intron | 20.0% |
| !!! | AGCTTTTATTATTTTATGCA+GGG | + | chr1_4:62228446-62228465 | Msa0176030:intron | 20.0% |
| !! | AACAAAAATCAACATCAATT+CGG | + | chr1_4:62228643-62228662 | Msa0176030:intron | 20.0% |
| !! | AACAAATTTCGAAAACAATA+TGG | - | chr1_4:62228988-62229007 | None:intergenic | 20.0% |
| !!! | AAATTTTCAGCAAAAAGAAA+AGG | - | chr1_4:62229422-62229441 | None:intergenic | 20.0% |
| !! | TCAATTACATATCACAATAA+TGG | - | chr1_4:62229458-62229477 | None:intergenic | 20.0% |
| ! | TTATATAGAAATATCCGAAG+AGG | - | chr1_4:62224174-62224193 | None:intergenic | 25.0% |
| ! | ATATAGTTTGAGAATTGAAG+AGG | - | chr1_4:62224500-62224519 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_4:62224659-62224678 | None:intergenic | 25.0% |
| ! | TAAGCATTTGTGAGATTATT+AGG | - | chr1_4:62224846-62224865 | None:intergenic | 25.0% |
| ! | TATTTAAGCTATAAGCTGTA+AGG | + | chr1_4:62224988-62225007 | Msa0176030:intron | 25.0% |
| ! | TAAACATTCGTGAGATTATT+AGG | - | chr1_4:62225073-62225092 | None:intergenic | 25.0% |
| !!! | TGGTTTTAATCTTGAGTTTT+TGG | + | chr1_4:62225266-62225285 | Msa0176030:intron | 25.0% |
| ! | ATTATTCATAAAAGAGAGCA+AGG | - | chr1_4:62225493-62225512 | None:intergenic | 25.0% |
| ! | AAAGCTACTACTTTAAGTAA+CGG | + | chr1_4:62225569-62225588 | Msa0176030:intron | 25.0% |
| !!! | CTGTTCCTTTAACTTTTTAA+AGG | + | chr1_4:62225615-62225634 | Msa0176030:intron | 25.0% |
| !! | GTGTATGACATAATAGTTTT+AGG | + | chr1_4:62225715-62225734 | Msa0176030:intron | 25.0% |
| ! | CTACTCTTAAGAAATAAGTA+CGG | - | chr1_4:62226086-62226105 | None:intergenic | 25.0% |
| ! | ACTAAAAGTAATACATGTCT+GGG | - | chr1_4:62226248-62226267 | None:intergenic | 25.0% |
| !!! | TGTATTACTTTTAGTGTTGA+TGG | + | chr1_4:62226253-62226272 | Msa0176030:CDS | 25.0% |
| ! | ACAGCATAAAAACAATTTGT+TGG | - | chr1_4:62226323-62226342 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTAAGGACCTT+TGG | + | chr1_4:62226874-62226893 | Msa0176030:intron | 25.0% |
| ! | TAATCATGATTAAGTCATCT+AGG | + | chr1_4:62227425-62227444 | Msa0176030:intron | 25.0% |
| !!! | AAAATGATTTGGTAATCTCT+AGG | - | chr1_4:62227452-62227471 | None:intergenic | 25.0% |
| ! | TTGAGCAAAAGAAAATGATT+TGG | - | chr1_4:62227463-62227482 | None:intergenic | 25.0% |
| ! | AATTAGAAATGAGCATCATA+AGG | - | chr1_4:62227527-62227546 | None:intergenic | 25.0% |
| !!! | GAGAAAGTTATAGCTATTTT+AGG | + | chr1_4:62227679-62227698 | Msa0176030:intron | 25.0% |
| !! | TGGATTTGAACAAATACTTT+TGG | + | chr1_4:62227815-62227834 | Msa0176030:intron | 25.0% |
| !! | ATCAGATCTCTGTAATTTTA+GGG | + | chr1_4:62228140-62228159 | Msa0176030:intron | 25.0% |
| ! | GCATAAAATAATAAAAGCTC+AGG | - | chr1_4:62228445-62228464 | None:intergenic | 25.0% |
| !!! | GAGCTTTTATTATTTTATGC+AGG | + | chr1_4:62228445-62228464 | Msa0176030:intron | 25.0% |
| ! | AATGGTTAATGAATATGACA+TGG | + | chr1_4:62228712-62228731 | Msa0176030:intron | 25.0% |
| !!! | ATCATGTTTATTTTATCACG+TGG | - | chr1_4:62228806-62228825 | None:intergenic | 25.0% |
| ! | GATGGTTAATGAATATAACA+AGG | - | chr1_4:62228925-62228944 | None:intergenic | 25.0% |
| ! | AATTTCGAAAACAATATGGA+TGG | - | chr1_4:62228984-62229003 | None:intergenic | 25.0% |
| ! | ATTGATCATCAAATGATTGA+GGG | - | chr1_4:62229240-62229259 | None:intergenic | 25.0% |
| !! | TCAATCATTTGATGATCAAT+GGG | + | chr1_4:62229240-62229259 | Msa0176030:CDS | 25.0% |
| !! | CTGAAAATTTTAAACCCAAA+AGG | + | chr1_4:62229432-62229451 | Msa0176030:three_prime_UTR | 25.0% |
| ! | ATTTACGACTTAAGACATTT+GGG | + | chr1_4:62229557-62229576 | Msa0176030:three_prime_UTR | 25.0% |
| ! | CAAATTTCTGAGAATTTGGA+TGG | + | chr1_4:62224296-62224315 | Msa0176030:exon | 30.0% |
| !! | AACAACTAGGTTGAGATTTT+CGG | - | chr1_4:62224379-62224398 | None:intergenic | 30.0% |
| TAGACAAAGAAACGGTTATA+GGG | - | chr1_4:62224461-62224480 | None:intergenic | 30.0% | |
| AATTGAAGAGGAATACCAAA+GGG | - | chr1_4:62224488-62224507 | None:intergenic | 30.0% | |
| TTGCAGTTGTATATAGACTA+TGG | + | chr1_4:62224633-62224652 | Msa0176030:intron | 30.0% | |
| TATGCCTGTATATAACCTAT+AGG | + | chr1_4:62224864-62224883 | Msa0176030:intron | 30.0% | |
| TCACGAATGTTTATACAAGT+AGG | + | chr1_4:62225080-62225099 | Msa0176030:intron | 30.0% | |
| !! | TTATTTTGTGCATTCCCTTT+TGG | + | chr1_4:62225163-62225182 | Msa0176030:intron | 30.0% |
| TTTCTCAGCTAAAACCAAAA+GGG | - | chr1_4:62225180-62225199 | None:intergenic | 30.0% | |
| ATTTCTCAGCTAAAACCAAA+AGG | - | chr1_4:62225181-62225200 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGAACAAGATTGT+TGG | + | chr1_4:62225204-62225223 | Msa0176030:intron | 30.0% |
| !! | ATAATTCTGCTTTTGAAGAG+TGG | + | chr1_4:62225246-62225265 | Msa0176030:intron | 30.0% |
| !! | GAGTTTTTGGATCATGTAAT+TGG | + | chr1_4:62225279-62225298 | Msa0176030:intron | 30.0% |
| GTTAAAGGAACAGAAAATGT+TGG | - | chr1_4:62225608-62225627 | None:intergenic | 30.0% | |
| !!! | TAATAGTTTTAGGCTCAGTT+TGG | + | chr1_4:62225725-62225744 | Msa0176030:intron | 30.0% |
| TGAAGTAGAACTGTTAGTAA+CGG | - | chr1_4:62226011-62226030 | None:intergenic | 30.0% | |
| GCTTATATGTTATAAGCTTG+CGG | + | chr1_4:62226040-62226059 | Msa0176030:intron | 30.0% | |
| CACTAAAAGTAATACATGTC+TGG | - | chr1_4:62226249-62226268 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTTATGCTGTGTG+TGG | + | chr1_4:62226326-62226345 | Msa0176030:intron | 30.0% |
| AAGACAGAAGTAAAACATAC+AGG | - | chr1_4:62226385-62226404 | None:intergenic | 30.0% | |
| ! | AGATGAATGCATCTTTTAGA+AGG | - | chr1_4:62226543-62226562 | None:intergenic | 30.0% |
| TGACAAAACGAAAGACAATA+CGG | - | chr1_4:62226739-62226758 | None:intergenic | 30.0% | |
| TTTATTTAAGGACCTTTGGA+AGG | + | chr1_4:62226878-62226897 | Msa0176030:intron | 30.0% | |
| !!! | TGAATTATGTCGATTTTCCA+AGG | + | chr1_4:62226998-62227017 | Msa0176030:CDS | 30.0% |
| ! | GATACTCATACCTTTTTGAA+CGG | - | chr1_4:62227051-62227070 | None:intergenic | 30.0% |
| TCAAGTATGACCTTAATCAT+TGG | + | chr1_4:62227133-62227152 | Msa0176030:intron | 30.0% | |
| !! | ATTAGAGGTACCAATGATTA+AGG | - | chr1_4:62227146-62227165 | None:intergenic | 30.0% |
| !!! | TGGTACCTCTAATTTTGATT+AGG | + | chr1_4:62227153-62227172 | Msa0176030:intron | 30.0% |
| !!! | GGTACCTCTAATTTTGATTA+GGG | + | chr1_4:62227154-62227173 | Msa0176030:intron | 30.0% |
| !!! | GTACCTCTAATTTTGATTAG+GGG | + | chr1_4:62227155-62227174 | Msa0176030:intron | 30.0% |
| TATCCCCTAATCAAAATTAG+AGG | - | chr1_4:62227161-62227180 | None:intergenic | 30.0% | |
| ATGAGTTCATGGAACAAAAT+AGG | + | chr1_4:62227204-62227223 | Msa0176030:CDS | 30.0% | |
| TGAGTTCATGGAACAAAATA+GGG | + | chr1_4:62227205-62227224 | Msa0176030:CDS | 30.0% | |
| ATATAGGTTCTTACAGAGAA+AGG | - | chr1_4:62227290-62227309 | None:intergenic | 30.0% | |
| GATATGTGCAAGGTAAATAT+AGG | - | chr1_4:62227306-62227325 | None:intergenic | 30.0% | |
| CAAAACAATTGATATGTGCA+AGG | - | chr1_4:62227316-62227335 | None:intergenic | 30.0% | |
| TTTAAGTCATTTGGATAGCA+AGG | + | chr1_4:62227345-62227364 | Msa0176030:intron | 30.0% | |
| TTTGTCATATCTCAGAACTA+AGG | + | chr1_4:62227764-62227783 | Msa0176030:intron | 30.0% | |
| AGGATTTATGTTCGAATTGA+CGG | - | chr1_4:62227982-62228001 | None:intergenic | 30.0% | |
| TTGACTATAACGATTCTGAA+AGG | - | chr1_4:62228002-62228021 | None:intergenic | 30.0% | |
| ! | CTAATTTTATCTGTGATGCA+CGG | - | chr1_4:62228054-62228073 | None:intergenic | 30.0% |
| ! | CATCAGATCTCTGTAATTTT+AGG | + | chr1_4:62228139-62228158 | Msa0176030:intron | 30.0% |
| !!! | AATTTTAGGGCAAGTAAAGA+TGG | + | chr1_4:62228153-62228172 | Msa0176030:intron | 30.0% |
| ! | ATCATTCATGAACACACTTT+TGG | + | chr1_4:62228318-62228337 | Msa0176030:intron | 30.0% |
| ! | TCATTCATGAACACACTTTT+GGG | + | chr1_4:62228319-62228338 | Msa0176030:intron | 30.0% |
| GGCCTAAAATTTCAATCTAT+TGG | + | chr1_4:62228384-62228403 | Msa0176030:intron | 30.0% | |
| ! | GGCCAATAGATTGAAATTTT+AGG | - | chr1_4:62228389-62228408 | None:intergenic | 30.0% |
| ! | ACTAAGAGAACTGGTTTATT+AGG | - | chr1_4:62228410-62228429 | None:intergenic | 30.0% |
| AACTGAATGTACCTAAAGAT+TGG | + | chr1_4:62228511-62228530 | Msa0176030:CDS | 30.0% | |
| AATGTACCTAAAGATTGGAA+AGG | + | chr1_4:62228516-62228535 | Msa0176030:CDS | 30.0% | |
| AGATAACCTTTCCAATCTTT+AGG | - | chr1_4:62228525-62228544 | None:intergenic | 30.0% | |
| ! | ACGATTGTGAATGTGTTTTA+TGG | - | chr1_4:62228571-62228590 | None:intergenic | 30.0% |
| TATATTCTATGGTCTCAGAA+AGG | - | chr1_4:62228594-62228613 | None:intergenic | 30.0% | |
| AAAATCAACATCAATTCGGA+TGG | + | chr1_4:62228647-62228666 | Msa0176030:intron | 30.0% | |
| GTTAATGTCGTTCAAATATG+TGG | + | chr1_4:62228673-62228692 | Msa0176030:intron | 30.0% | |
| TAAACACAAATTGTGGTCAA+TGG | - | chr1_4:62228831-62228850 | None:intergenic | 30.0% | |
| AATGAACACCTGAAAAATCA+TGG | + | chr1_4:62228857-62228876 | Msa0176030:intron | 30.0% | |
| GTGTGGTTAATTACATTTAG+CGG | + | chr1_4:62228879-62228898 | Msa0176030:intron | 30.0% | |
| ! | TTTAGCGGATGATTAATGAT+TGG | + | chr1_4:62228894-62228913 | Msa0176030:intron | 30.0% |
| !!! | AGATATACTTGGTGCTTTTA+GGG | + | chr1_4:62229095-62229114 | Msa0176030:CDS | 30.0% |
| !!! | TTTAGGGCTATTTTTAGTGT+CGG | + | chr1_4:62229111-62229130 | Msa0176030:CDS | 30.0% |
| CATTGATCATCAAATGATTG+AGG | - | chr1_4:62229241-62229260 | None:intergenic | 30.0% | |
| ! | CTCAATCATTTGATGATCAA+TGG | + | chr1_4:62229239-62229258 | Msa0176030:CDS | 30.0% |
| ! | CAATCATTTGATGATCAATG+GGG | + | chr1_4:62229241-62229260 | Msa0176030:CDS | 30.0% |
| CTGTTTACACATGTAGAATT+AGG | + | chr1_4:62229359-62229378 | Msa0176030:three_prime_UTR | 30.0% | |
| ! | TATCACAATAATGGCCTTTT+GGG | - | chr1_4:62229449-62229468 | None:intergenic | 30.0% |
| ! | ATATCACAATAATGGCCTTT+TGG | - | chr1_4:62229450-62229469 | None:intergenic | 30.0% |
| GATTTACGACTTAAGACATT+TGG | + | chr1_4:62229556-62229575 | Msa0176030:three_prime_UTR | 30.0% | |
| TTTACGACTTAAGACATTTG+GGG | + | chr1_4:62229558-62229577 | Msa0176030:three_prime_UTR | 30.0% | |
| !!! | GGGCATTTTTTTTTAGCTTA+TGG | + | chr1_4:62229578-62229597 | Msa0176030:three_prime_UTR | 30.0% |
| ! | AGTTCGGTTCTTTTTCCAAT+CGG | - | chr1_4:62224262-62224281 | None:intergenic | 35.0% |
| !! | ACAACTAGGTTGAGATTTTC+GGG | - | chr1_4:62224378-62224397 | None:intergenic | 35.0% |
| AATCTCAACCTAGTTGTTCT+TGG | + | chr1_4:62224381-62224400 | Msa0176030:CDS | 35.0% | |
| GTAGACAAAGAAACGGTTAT+AGG | - | chr1_4:62224462-62224481 | None:intergenic | 35.0% | |
| ATTGAAGAGGAATACCAAAG+GGG | - | chr1_4:62224487-62224506 | None:intergenic | 35.0% | |
| GAATTGAAGAGGAATACCAA+AGG | - | chr1_4:62224489-62224508 | None:intergenic | 35.0% | |
| ATATAGACTATGGCCATGTT+TGG | + | chr1_4:62224643-62224662 | Msa0176030:intron | 35.0% | |
| ACAGTTTATGAACATGCCAT+AGG | + | chr1_4:62224816-62224835 | Msa0176030:intron | 35.0% | |
| ACAGCCTATAGGTTATATAC+AGG | - | chr1_4:62224871-62224890 | None:intergenic | 35.0% | |
| TAGCTTATGATACAGCCTAT+AGG | - | chr1_4:62224882-62224901 | None:intergenic | 35.0% | |
| ! | CTATAAGCTGTAAGGTATTC+TGG | + | chr1_4:62224996-62225015 | Msa0176030:intron | 35.0% |
| ! | TGTTTGGATCGACTTATTTC+AGG | - | chr1_4:62225109-62225128 | None:intergenic | 35.0% |
| TGAAATAAGTCGATCCAAAC+AGG | + | chr1_4:62225108-62225127 | Msa0176030:intron | 35.0% | |
| CTCAGCTTCTAACACAAAAT+TGG | - | chr1_4:62225359-62225378 | None:intergenic | 35.0% | |
| ! | CAATTTTGTGTTAGAAGCTG+AGG | + | chr1_4:62225357-62225376 | Msa0176030:CDS | 35.0% |
| ACATAAAATCATCACCGCTA+GGG | - | chr1_4:62225411-62225430 | None:intergenic | 35.0% | |
| TTTATGTGCTCTTTGAGCAA+TGG | + | chr1_4:62225424-62225443 | Msa0176030:CDS | 35.0% | |
| ! | AGCTTCTTTTCTAATAGCCA+TGG | + | chr1_4:62225459-62225478 | Msa0176030:intron | 35.0% |
| ! | GCTTCTTTTCTAATAGCCAT+GGG | + | chr1_4:62225460-62225479 | Msa0176030:intron | 35.0% |
| ! | TGTTCTTATTTCCTTGAGCT+AGG | + | chr1_4:62225689-62225708 | Msa0176030:intron | 35.0% |
| TATGTTATAAGCTTGCGGTT+TGG | + | chr1_4:62226045-62226064 | Msa0176030:intron | 35.0% | |
| ! | ATATTTTGCCTCGAGTTCTA+TGG | + | chr1_4:62226113-62226132 | Msa0176030:intron | 35.0% |
| AATCTAAACCATAGAACTCG+AGG | - | chr1_4:62226124-62226143 | None:intergenic | 35.0% | |
| TGTACCTAAAATCCATATCC+CGG | - | chr1_4:62226494-62226513 | None:intergenic | 35.0% | |
| TAGTCTAATTATTGCAGGCA+CGG | - | chr1_4:62226631-62226650 | None:intergenic | 35.0% | |
| TGCCTGCAATAATTAGACTA+AGG | + | chr1_4:62226631-62226650 | Msa0176030:intron | 35.0% | |
| CTCCTTAGTCTAATTATTGC+AGG | - | chr1_4:62226636-62226655 | None:intergenic | 35.0% | |
| AAATCTTCAGATCCTTCCAA+AGG | - | chr1_4:62226893-62226912 | None:intergenic | 35.0% | |
| !!! | TTATGTCGATTTTCCAAGGA+TGG | + | chr1_4:62227002-62227021 | Msa0176030:CDS | 35.0% |
| GGAACCAAACCATTTCTATT+TGG | + | chr1_4:62227023-62227042 | Msa0176030:CDS | 35.0% | |
| TAGAAAGTCTGCTTCAGTAA+TGG | + | chr1_4:62227242-62227261 | Msa0176030:CDS | 35.0% | |
| TTGTATTGCCAAAACTGTGA+AGG | + | chr1_4:62227378-62227397 | Msa0176030:intron | 35.0% | |
| TGTATTGCCAAAACTGTGAA+GGG | + | chr1_4:62227379-62227398 | Msa0176030:intron | 35.0% | |
| AGATATGACAAACATGGCAT+GGG | - | chr1_4:62227756-62227775 | None:intergenic | 35.0% | |
| !! | GTTCTGAGATATGACAAACA+TGG | - | chr1_4:62227762-62227781 | None:intergenic | 35.0% |
| ! | AGAACTAAGGCTTCTCTTTT+GGG | + | chr1_4:62227777-62227796 | Msa0176030:intron | 35.0% |
| TTGGGCTGTTCAATTTGATA+TGG | + | chr1_4:62227795-62227814 | Msa0176030:intron | 35.0% | |
| AGCTCAAGATTATACAAGCA+AGG | - | chr1_4:62228119-62228138 | None:intergenic | 35.0% | |
| GTGGATATTTACCTTTCACT+AGG | - | chr1_4:62228273-62228292 | None:intergenic | 35.0% | |
| TGAAAGGTAAATATCCACAC+TGG | + | chr1_4:62228275-62228294 | Msa0176030:intron | 35.0% | |
| !! | TAATCAAAAAGGTACCAGTG+TGG | - | chr1_4:62228292-62228311 | None:intergenic | 35.0% |
| ! | CATTCATGAACACACTTTTG+GGG | + | chr1_4:62228320-62228339 | Msa0176030:intron | 35.0% |
| TAAACCAGTTCTCTTAGTCT+TGG | + | chr1_4:62228412-62228431 | Msa0176030:intron | 35.0% | |
| TACTTACAACCTCAGTAGAA+TGG | + | chr1_4:62228472-62228491 | Msa0176030:CDS | 35.0% | |
| ACTTACAACCTCAGTAGAAT+GGG | + | chr1_4:62228473-62228492 | Msa0176030:CDS | 35.0% | |
| ! | ATTTTATCACGTGGAGATGA+CGG | - | chr1_4:62228797-62228816 | None:intergenic | 35.0% |
| ! | TAACCACACCATGATTTTTC+AGG | - | chr1_4:62228868-62228887 | None:intergenic | 35.0% |
| ! | ATGTGGTTAGTTACGTTTCA+TGG | - | chr1_4:62228947-62228966 | None:intergenic | 35.0% |
| ! | TGGTTGGTGCAATTTAAATG+TGG | - | chr1_4:62228964-62228983 | None:intergenic | 35.0% |
| TCGAAAACAATATGGATGGT+TGG | - | chr1_4:62228980-62228999 | None:intergenic | 35.0% | |
| !!! | CAGATATACTTGGTGCTTTT+AGG | + | chr1_4:62229094-62229113 | Msa0176030:CDS | 35.0% |
| !! | CTCATCATTGGTTTAAACCT+TGG | - | chr1_4:62229214-62229233 | None:intergenic | 35.0% |
| ! | TCTATGTGTTGTTGTTCGAT+TGG | + | chr1_4:62229285-62229304 | Msa0176030:three_prime_UTR | 35.0% |
| GTGGTATCAAAATTCAACTC+AGG | + | chr1_4:62229329-62229348 | Msa0176030:three_prime_UTR | 35.0% | |
| ! | AAATTTGCAAGTTGAGCTTG+AGG | + | chr1_4:62229513-62229532 | Msa0176030:three_prime_UTR | 35.0% |
| TTGAGGCTGTTATGTAATCA+TGG | + | chr1_4:62229530-62229549 | Msa0176030:three_prime_UTR | 35.0% | |
| ! | GCAAGTTGTTTGTTGGATAG+TGG | - | chr1_4:62224130-62224149 | None:intergenic | 40.0% |
| AATGAGCGCAAGTTGTTTGT+TGG | - | chr1_4:62224137-62224156 | None:intergenic | 40.0% | |
| ! | TTGATTTTCAGTGACCCGAT+TGG | + | chr1_4:62224244-62224263 | Msa0176030:five_prime_UTR | 40.0% |
| ! | GTTCGGTTCTTTTTCCAATC+GGG | - | chr1_4:62224261-62224280 | None:intergenic | 40.0% |
| ATTTGGATGGAGAATGATGC+TGG | + | chr1_4:62224309-62224328 | Msa0176030:exon | 40.0% | |
| TCAACCTAGTTGTTCTTGGA+AGG | + | chr1_4:62224385-62224404 | Msa0176030:CDS | 40.0% | |
| ! | GAGAAAATCTGAAGCAAAGC+AGG | - | chr1_4:62224432-62224451 | None:intergenic | 40.0% |
| AGAAACGGTTATAGGGTCAA+AGG | - | chr1_4:62224454-62224473 | None:intergenic | 40.0% | |
| AGGGGAAGTAGACAAAGAAA+CGG | - | chr1_4:62224469-62224488 | None:intergenic | 40.0% | |
| TTCTTTGTCTACTTCCCCTT+TGG | + | chr1_4:62224470-62224489 | Msa0176030:CDS | 40.0% | |
| GAGATTATTAGGAGAGCCTA+TGG | - | chr1_4:62224835-62224854 | None:intergenic | 40.0% | |
| GGCTGTATCATAAGCTATTC+TGG | + | chr1_4:62224885-62224904 | Msa0176030:intron | 40.0% | |
| GCATATGCATCACTCTACAT+AGG | - | chr1_4:62225135-62225154 | None:intergenic | 40.0% | |
| TTCCTGAACAAGATTGTTGG+TGG | + | chr1_4:62225207-62225226 | Msa0176030:intron | 40.0% | |
| TTCCACCAACAATCTTGTTC+AGG | - | chr1_4:62225212-62225231 | None:intergenic | 40.0% | |
| GGATCATGTAATTGGAAGTG+TGG | + | chr1_4:62225287-62225306 | Msa0176030:intron | 40.0% | |
| TTTGTGTTAGAAGCTGAGGA+AGG | + | chr1_4:62225361-62225380 | Msa0176030:CDS | 40.0% | |
| CACATAAAATCATCACCGCT+AGG | - | chr1_4:62225412-62225431 | None:intergenic | 40.0% | |
| CTACTACTTTAAGTAACGGC+AGG | + | chr1_4:62225573-62225592 | Msa0176030:intron | 40.0% | |
| ATTTGGTACAACTGAGCATG+CGG | - | chr1_4:62225652-62225671 | None:intergenic | 40.0% | |
| GTAGATGACTGATAAGCTAG+CGG | + | chr1_4:62225757-62225776 | Msa0176030:intron | 40.0% | |
| TGCAGATTGTTTGAGCTCTA+TGG | + | chr1_4:62226163-62226182 | Msa0176030:intron | 40.0% | |
| AAACATGAAACTGTTGCCCA+AGG | + | chr1_4:62226195-62226214 | Msa0176030:CDS | 40.0% | |
| !! | GATGGATCTAAATTTGCTGC+TGG | + | chr1_4:62226271-62226290 | Msa0176030:CDS | 40.0% |
| !! | GATCTAAATTTGCTGCTGGT+GGG | + | chr1_4:62226275-62226294 | Msa0176030:CDS | 40.0% |
| CTTCTGTCTTTAACACGTGT+AGG | + | chr1_4:62226395-62226414 | Msa0176030:intron | 40.0% | |
| TGTCTTTAACACGTGTAGGA+TGG | + | chr1_4:62226399-62226418 | Msa0176030:intron | 40.0% | |
| TCCAAAATTATGCGCATGCT+AGG | - | chr1_4:62226447-62226466 | None:intergenic | 40.0% | |
| ! | CAAAAGCACACAAATCTGTC+CGG | + | chr1_4:62226472-62226491 | Msa0176030:CDS | 40.0% |
| ! | AAAAGCACACAAATCTGTCC+GGG | + | chr1_4:62226473-62226492 | Msa0176030:CDS | 40.0% |
| CAATGTCATCAAGGTTTCAC+AGG | - | chr1_4:62226709-62226728 | None:intergenic | 40.0% | |
| GGTCAGTATCAATGTCATCA+AGG | - | chr1_4:62226718-62226737 | None:intergenic | 40.0% | |
| CTAGCTTCAACTTCTACTGA+TGG | + | chr1_4:62226783-62226802 | Msa0176030:CDS | 40.0% | |
| AGAATCTGGAAGGTTGAAGA+CGG | + | chr1_4:62226813-62226832 | Msa0176030:CDS | 40.0% | |
| !! | AAATGGTTTGGTTCCATCCT+TGG | - | chr1_4:62227018-62227037 | None:intergenic | 40.0% |
| ATAAGTCTCTTACAGCGGTT+TGG | + | chr1_4:62227178-62227197 | Msa0176030:CDS | 40.0% | |
| TAAGTCTCTTACAGCGGTTT+GGG | + | chr1_4:62227179-62227198 | Msa0176030:CDS | 40.0% | |
| AAGTCATTTGGATAGCAAGG+TGG | + | chr1_4:62227348-62227367 | Msa0176030:intron | 40.0% | |
| ! | TTCTTCACCCTTCACAGTTT+TGG | - | chr1_4:62227389-62227408 | None:intergenic | 40.0% |
| GAGATATGACAAACATGGCA+TGG | - | chr1_4:62227757-62227776 | None:intergenic | 40.0% | |
| ! | CAGAACTAAGGCTTCTCTTT+TGG | + | chr1_4:62227776-62227795 | Msa0176030:intron | 40.0% |
| ! | GGTGTAGTCTCTTGCTATAA+TGG | - | chr1_4:62228218-62228237 | None:intergenic | 40.0% |
| TATAGCAAGAGACTACACCT+CGG | + | chr1_4:62228219-62228238 | Msa0176030:CDS | 40.0% | |
| TGGATTTCTGTCCTAGTGAA+AGG | + | chr1_4:62228259-62228278 | Msa0176030:CDS | 40.0% | |
| ATAGCCAAGACTAAGAGAAC+TGG | - | chr1_4:62228419-62228438 | None:intergenic | 40.0% | |
| CTTACAACCTCAGTAGAATG+GGG | + | chr1_4:62228474-62228493 | Msa0176030:CDS | 40.0% | |
| TCAACATCAATTCGGATGGA+TGG | + | chr1_4:62228651-62228670 | Msa0176030:intron | 40.0% | |
| GGTTAATTACGCTCAGTGAA+TGG | + | chr1_4:62228694-62228713 | Msa0176030:intron | 40.0% | |
| ACTGTCCATTGAACGTGATT+AGG | + | chr1_4:62228750-62228769 | Msa0176030:intron | 40.0% | |
| ACACCTGAAAAATCATGGTG+TGG | + | chr1_4:62228862-62228881 | Msa0176030:intron | 40.0% | |
| AGCGGATGATTAATGATTGG+TGG | + | chr1_4:62228897-62228916 | Msa0176030:intron | 40.0% | |
| ! | GGTTAGTTACGTTTCATGGA+TGG | - | chr1_4:62228943-62228962 | None:intergenic | 40.0% |
| !!! | GCTGGTTGATTTTTTCCCAT+TGG | - | chr1_4:62229187-62229206 | None:intergenic | 40.0% |
| AAAATCAACCAGCTAGACCA+AGG | + | chr1_4:62229194-62229213 | Msa0176030:CDS | 40.0% | |
| GTAGTATCAGTAGCTGTAAG+TGG | + | chr1_4:62229310-62229329 | Msa0176030:three_prime_UTR | 40.0% | |
| GGCTGTTATGTAATCATGGA+TGG | + | chr1_4:62229534-62229553 | Msa0176030:three_prime_UTR | 40.0% | |
| ATCCGAAGAGGAAAGAGAGA+GGG | - | chr1_4:62224162-62224181 | None:intergenic | 45.0% | |
| TATCCGAAGAGGAAAGAGAG+AGG | - | chr1_4:62224163-62224182 | None:intergenic | 45.0% | |
| AATGATGCTGGATCACCTCA+GGG | + | chr1_4:62224321-62224340 | Msa0176030:CDS | 45.0% | |
| TTACTTGCGGGTCATGGATT+CGG | + | chr1_4:62224349-62224368 | Msa0176030:CDS | 45.0% | |
| GGACAAGAATTTCCACGCTT+GGG | - | chr1_4:62224411-62224430 | None:intergenic | 45.0% | |
| AGGACAAGAATTTCCACGCT+TGG | - | chr1_4:62224412-62224431 | None:intergenic | 45.0% | |
| CACTCTACATAGGACCTGTT+TGG | - | chr1_4:62225125-62225144 | None:intergenic | 45.0% | |
| AGAGCAAGGTTTCAATCCCA+TGG | - | chr1_4:62225479-62225498 | None:intergenic | 45.0% | |
| TCATACACTCTCCTAGCTCA+AGG | - | chr1_4:62225703-62225722 | None:intergenic | 45.0% | |
| ! | ACTGATAAGCTAGCGGATAG+TGG | + | chr1_4:62225764-62225783 | Msa0176030:intron | 45.0% |
| !! | TGTAGAGGGGTTAGTTCCTT+GGG | - | chr1_4:62226214-62226233 | None:intergenic | 45.0% |
| AAGGAACTAACCCCTCTACA+GGG | + | chr1_4:62226214-62226233 | Msa0176030:CDS | 45.0% | |
| !! | GGATCTAAATTTGCTGCTGG+TGG | + | chr1_4:62226274-62226293 | Msa0176030:CDS | 45.0% |
| !! | TAAATTTGCTGCTGGTGGGT+CGG | + | chr1_4:62226279-62226298 | Msa0176030:CDS | 45.0% |
| GGATGGACACCTCAGAATTA+TGG | + | chr1_4:62226416-62226435 | Msa0176030:intron | 45.0% | |
| GACACCTCAGAATTATGGAG+TGG | + | chr1_4:62226421-62226440 | Msa0176030:CDS | 45.0% | |
| TAGGCCACTCCATAATTCTG+AGG | - | chr1_4:62226428-62226447 | None:intergenic | 45.0% | |
| ! | GCCTAGCATGCGCATAATTT+TGG | + | chr1_4:62226443-62226462 | Msa0176030:CDS | 45.0% |
| ! | CGGACAGATTTGTGTGCTTT+TGG | - | chr1_4:62226474-62226493 | None:intergenic | 45.0% |
| ACACAAATCTGTCCGGGATA+TGG | + | chr1_4:62226479-62226498 | Msa0176030:CDS | 45.0% | |
| ! | CTGTCCGGGATATGGATTTT+AGG | + | chr1_4:62226487-62226506 | Msa0176030:CDS | 45.0% |
| GGCGCCAAATAGAAATGGTT+TGG | - | chr1_4:62227030-62227049 | None:intergenic | 45.0% | |
| TGAACGGCGCCAAATAGAAA+TGG | - | chr1_4:62227035-62227054 | None:intergenic | 45.0% | |
| CTATTTGGCGCCGTTCAAAA+AGG | + | chr1_4:62227038-62227057 | Msa0176030:CDS | 45.0% | |
| AGGGGATAAGTCTCTTACAG+CGG | + | chr1_4:62227173-62227192 | Msa0176030:intron | 45.0% | |
| ! | CGGTTTGGGATATGAGTTCA+TGG | + | chr1_4:62227193-62227212 | Msa0176030:CDS | 45.0% |
| GGAACAAAATAGGGCACAAG+AGG | + | chr1_4:62227214-62227233 | Msa0176030:CDS | 45.0% | |
| ATGTTGCGATAGTTGTACCG+AGG | - | chr1_4:62228239-62228258 | None:intergenic | 45.0% | |
| CGGTACAACTATCGCAACAT+TGG | + | chr1_4:62228239-62228258 | Msa0176030:CDS | 45.0% | |
| TATGGATGTGTGCGAGCATA+TGG | - | chr1_4:62228553-62228572 | None:intergenic | 45.0% | |
| TCGTGCCTAATCACGTTCAA+TGG | - | chr1_4:62228758-62228777 | None:intergenic | 45.0% | |
| TGCAGAGTGGCAGATATACT+TGG | + | chr1_4:62229084-62229103 | Msa0176030:intron | 45.0% | |
| ! | TCGAGAACTCTGATTCGTTC+TGG | + | chr1_4:62229155-62229174 | Msa0176030:CDS | 45.0% |
| ! | CGAGAACTCTGATTCGTTCT+GGG | + | chr1_4:62229156-62229175 | Msa0176030:CDS | 45.0% |
| ! | GAGAACTCTGATTCGTTCTG+GGG | + | chr1_4:62229157-62229176 | Msa0176030:CDS | 45.0% |
| !! | TTCGTTCTGGGGATTTCCAA+TGG | + | chr1_4:62229168-62229187 | Msa0176030:CDS | 45.0% |
| !! | TCGTTCTGGGGATTTCCAAT+GGG | + | chr1_4:62229169-62229188 | Msa0176030:CDS | 45.0% |
| GGTTTAAACCTTGGTCTAGC+TGG | - | chr1_4:62229205-62229224 | None:intergenic | 45.0% | |
| GATTGAGGGTCTCTCATCAT+TGG | - | chr1_4:62229226-62229245 | None:intergenic | 45.0% | |
| CGAACAACAACACATAGACG+CGG | - | chr1_4:62229283-62229302 | None:intergenic | 45.0% | |
| !!! | AAATATCATATTTAATTTAA+TGG | + | chr1_4:62227889-62227908 | Msa0176030:intron | 5.0% |
| !!! | AATATCATATTTAATTTAAT+GGG | + | chr1_4:62227890-62227909 | Msa0176030:intron | 5.0% |
| GACCCTCTCTCTTTCCTCTT+CGG | + | chr1_4:62224157-62224176 | Msa0176030:five_prime_UTR | 50.0% | |
| GAATGATGCTGGATCACCTC+AGG | + | chr1_4:62224320-62224339 | Msa0176030:CDS | 50.0% | |
| ATCCATGACCCGCAAGTAAC+CGG | - | chr1_4:62224348-62224367 | None:intergenic | 50.0% | |
| TGGGCCTTCCAAGAACAACT+AGG | - | chr1_4:62224392-62224411 | None:intergenic | 50.0% | |
| AGAAGCTGAGGAAGGTGATC+CGG | + | chr1_4:62225369-62225388 | Msa0176030:CDS | 50.0% | |
| !! | CTGTAGAGGGGTTAGTTCCT+TGG | - | chr1_4:62226215-62226234 | None:intergenic | 50.0% |
| CAAGGAACTAACCCCTCTAC+AGG | + | chr1_4:62226213-62226232 | Msa0176030:CDS | 50.0% | |
| CTAACCCCTCTACAGGGTAT+TGG | + | chr1_4:62226220-62226239 | Msa0176030:CDS | 50.0% | |
| GGAACCAATACCCTGTAGAG+GGG | - | chr1_4:62226227-62226246 | None:intergenic | 50.0% | |
| GGGAACCAATACCCTGTAGA+GGG | - | chr1_4:62226228-62226247 | None:intergenic | 50.0% | |
| TGGGAACCAATACCCTGTAG+AGG | - | chr1_4:62226229-62226248 | None:intergenic | 50.0% | |
| CTGATGGTTCAGCGAGAATC+TGG | + | chr1_4:62226799-62226818 | Msa0176030:CDS | 50.0% | |
| TGGTTCAGCGAGAATCTGGA+AGG | + | chr1_4:62226803-62226822 | Msa0176030:CDS | 50.0% | |
| GTATTTCCCGTCGTGGCTAA+CGG | - | chr1_4:62227268-62227287 | None:intergenic | 50.0% | |
| !! | GAGAAAGGTATTTCCCGTCG+TGG | - | chr1_4:62227275-62227294 | None:intergenic | 50.0% |
| CAATGCTCCCCATTCTACTG+AGG | - | chr1_4:62228484-62228503 | None:intergenic | 50.0% | |
| ! | CTCAGTAGAATGGGGAGCAT+TGG | + | chr1_4:62228482-62228501 | Msa0176030:CDS | 50.0% |
| AGACGCGGTCACATATCTAC+TGG | - | chr1_4:62229268-62229287 | None:intergenic | 50.0% | |
| GGGTGCACAGCAATAGCAAC+CGG | - | chr1_4:62225391-62225410 | None:intergenic | 55.0% | |
| GCTATTGCTGTGCACCCTAG+CGG | + | chr1_4:62225394-62225413 | Msa0176030:CDS | 55.0% | |
| TTGCGAGACAGAGTGGTCAC+AGG | - | chr1_4:62226843-62226862 | None:intergenic | 55.0% | |
| GACCACTCTGTCTCGCAACT+CGG | + | chr1_4:62226845-62226864 | Msa0176030:CDS | 55.0% | |
| TACCGAGTTGCGAGACAGAG+TGG | - | chr1_4:62226850-62226869 | None:intergenic | 55.0% | |
| GTAATGGCCGTTAGCCACGA+CGG | + | chr1_4:62227258-62227277 | Msa0176030:CDS | 55.0% | |
| TAATGGCCGTTAGCCACGAC+GGG | + | chr1_4:62227259-62227278 | Msa0176030:CDS | 55.0% | |
| TGCTGGATCACCTCAGGGTC+CGG | + | chr1_4:62224326-62224345 | Msa0176030:CDS | 60.0% | |
| CCTCAGGGTCCGGTTACTTG+CGG | + | chr1_4:62224336-62224355 | Msa0176030:CDS | 60.0% | |
| CTCAGGGTCCGGTTACTTGC+GGG | + | chr1_4:62224337-62224356 | Msa0176030:CDS | 60.0% | |
| GTCCGGTTACTTGCGGGTCA+TGG | + | chr1_4:62224343-62224362 | Msa0176030:CDS | 60.0% | |
| GTTCTTGGAAGGCCCAAGCG+TGG | + | chr1_4:62224396-62224415 | Msa0176030:CDS | 60.0% | |
| CCGCAAGTAACCGGACCCTG+AGG | - | chr1_4:62224339-62224358 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62224084 | 62229621 | 62224084 | ID=Msa0176030;Name=Msa0176030 |
| chr1_4 | mRNA | 62224084 | 62229621 | 62224084 | ID=Msa0176030-mRNA-1;Parent=Msa0176030;Name=Msa0176030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=231|1|1|1|1|1|10|342|392 |
| chr1_4 | exon | 62224084 | 62224491 | 62224084 | ID=Msa0176030-mRNA-1:exon:19960;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62225355 | 62225455 | 62225355 | ID=Msa0176030-mRNA-1:exon:19961;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62226168 | 62226300 | 62226168 | ID=Msa0176030-mRNA-1:exon:19962;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62226417 | 62226508 | 62226417 | ID=Msa0176030-mRNA-1:exon:19963;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62226767 | 62226866 | 62226767 | ID=Msa0176030-mRNA-1:exon:19964;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62226987 | 62227059 | 62226987 | ID=Msa0176030-mRNA-1:exon:19965;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62227175 | 62227295 | 62227175 | ID=Msa0176030-mRNA-1:exon:19966;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62228161 | 62228280 | 62228161 | ID=Msa0176030-mRNA-1:exon:19967;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62228467 | 62228537 | 62228467 | ID=Msa0176030-mRNA-1:exon:19968;Parent=Msa0176030-mRNA-1 |
| chr1_4 | exon | 62229089 | 62229621 | 62229089 | ID=Msa0176030-mRNA-1:exon:19969;Parent=Msa0176030-mRNA-1 |
| chr1_4 | five_prime_UTR | 62224084 | 62224314 | 62224084 | ID=Msa0176030-mRNA-1:five_prime_utr;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62224315 | 62224491 | 62224315 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62225355 | 62225455 | 62225355 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62226168 | 62226300 | 62226168 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62226417 | 62226508 | 62226417 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62226767 | 62226866 | 62226767 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62226987 | 62227059 | 62226987 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62227175 | 62227295 | 62227175 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62228161 | 62228280 | 62228161 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62228467 | 62228537 | 62228467 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | CDS | 62229089 | 62229279 | 62229089 | ID=Msa0176030-mRNA-1:cds;Parent=Msa0176030-mRNA-1 |
| chr1_4 | three_prime_UTR | 62229280 | 62229621 | 62229280 | ID=Msa0176030-mRNA-1:three_prime_utr;Parent=Msa0176030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
