Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132500 | sp|Q9XIG1|U80B1_ARATH | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132500 | G7IBZ1 | 97.229 | 433 | 10 | 1 | 1 | 433 | 1 | 431 | 0.0 | 869 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006470 | Msa0132500 | 0.802338 | 5.881698e-49 | -8.615850e-47 |
Msa0038270 | Msa0132500 | 0.875045 | 4.199240e-68 | -8.615850e-47 |
Msa0086120 | Msa0132500 | 0.824145 | 9.460123e-54 | -8.615850e-47 |
Msa0132500 | Msa1246040 | 0.810589 | 1.069502e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132500 | MtrunA17_Chr1g0201761 | 97.229 | 433 | 10 | 1 | 1 | 433 | 1 | 431 | 0.0 | 869 |
Msa0132500 | MtrunA17_Chr4g0010281 | 52.273 | 396 | 171 | 5 | 51 | 435 | 55 | 443 | 1.96e-140 | 419 |
Msa0132500 | MtrunA17_Chr4g0010291 | 51.554 | 386 | 169 | 5 | 61 | 435 | 63 | 441 | 3.11e-136 | 408 |
Msa0132500 | MtrunA17_Chr7g0248971 | 54.321 | 324 | 142 | 2 | 113 | 433 | 92 | 412 | 7.83e-119 | 362 |
Msa0132500 | MtrunA17_Chr0c19g0493791 | 55.224 | 201 | 86 | 2 | 113 | 311 | 92 | 290 | 9.61e-69 | 223 |
Msa0132500 | MtrunA17_Chr0c19g0493781 | 53.600 | 125 | 52 | 2 | 312 | 433 | 3 | 124 | 2.51e-38 | 143 |
Msa0132500 | MtrunA17_Chr2g0320741 | 72.222 | 72 | 16 | 1 | 435 | 502 | 54 | 125 | 2.07e-23 | 105 |
Msa0132500 | MtrunA17_Chr2g0320731 | 70.833 | 72 | 16 | 2 | 435 | 502 | 38 | 108 | 6.52e-22 | 100 |
Msa0132500 | MtrunA17_Chr7g0224201 | 48.000 | 50 | 26 | 0 | 389 | 438 | 27 | 76 | 4.46e-13 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132500 | AT1G43620.7 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.1 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.3 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.5 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.2 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.6 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.4 | 64.286 | 434 | 138 | 7 | 1 | 433 | 1 | 418 | 0.0 | 553 |
Msa0132500 | AT1G43620.8 | 80.417 | 240 | 47 | 0 | 194 | 433 | 7 | 246 | 8.45e-144 | 421 |
Msa0132500 | AT3G07020.2 | 50.500 | 400 | 197 | 1 | 37 | 435 | 58 | 457 | 2.63e-138 | 414 |
Msa0132500 | AT3G07020.1 | 50.500 | 400 | 197 | 1 | 37 | 435 | 58 | 457 | 3.06e-138 | 414 |
Msa0132500 | AT3G07020.3 | 57.751 | 329 | 139 | 0 | 107 | 435 | 47 | 375 | 3.37e-138 | 411 |
Find 138 sgRNAs with CRISPR-Local
Find 518 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGACCGCCTCCTTTATATTT+TGG | 0.131145 | 1_3:+63577096 | Msa0132500:CDS |
CTTGACCTTGATACTTGAAT+TGG | 0.245771 | 1_3:+63571690 | Msa0132500:five_prime_UTR |
TTTCTCAAAGTGCTGGTTAT+TGG | 0.284056 | 1_3:+63576267 | Msa0132500:CDS |
TGACCTTCAGCTGCTTTCTT+TGG | 0.293929 | 1_3:-63575418 | None:intergenic |
TTCTCAAAGTGCTGGTTATT+GGG | 0.310436 | 1_3:+63576268 | Msa0132500:CDS |
AGCCTGCACAGCACCTGATT+TGG | 0.315404 | 1_3:+63575460 | Msa0132500:CDS |
TGGTGTAAATTTCTATCCTC+TGG | 0.330664 | 1_3:+63574442 | Msa0132500:CDS |
CTGACAGTCTGTCCAATATT+AGG | 0.347761 | 1_3:-63573425 | None:intergenic |
GGCTCTTTAGTTGATGTTGT+TGG | 0.348548 | 1_3:+63577006 | Msa0132500:CDS |
TACATCTTGCTGAAGCCCTT+GGG | 0.364963 | 1_3:+63575927 | Msa0132500:CDS |
AGGAATTGAATCAATCGTTT+AGG | 0.369650 | 1_3:+63579873 | Msa0132500:CDS |
CTCCCAAATCCAAAATATAA+AGG | 0.373017 | 1_3:-63577105 | None:intergenic |
TCGAAGGCATGACCTAATAT+TGG | 0.373430 | 1_3:+63573413 | Msa0132500:CDS |
CATTGCATCACAGCTCCTAT+TGG | 0.379859 | 1_3:+63573318 | Msa0132500:CDS |
TTATAGTTGGAAATTCAAAA+AGG | 0.383463 | 1_3:+63571722 | Msa0132500:five_prime_UTR |
GGAATGCCGGTTTCCAAATC+AGG | 0.384516 | 1_3:-63575473 | None:intergenic |
GATACTTGAATTGGGTTATG+AGG | 0.386739 | 1_3:+63571699 | Msa0132500:five_prime_UTR |
TTGGGTTATGAGGTTATAGT+TGG | 0.390425 | 1_3:+63571709 | Msa0132500:five_prime_UTR |
TGACGATTCACCTTCATCTA+AGG | 0.393461 | 1_3:+63572141 | Msa0132500:CDS |
TTGTCCATACCACTTGGTTT+CGG | 0.398350 | 1_3:-63576567 | None:intergenic |
AGAAGTAGTTGAAGATGAAA+AGG | 0.401885 | 1_3:+63572048 | Msa0132500:CDS |
AAGAAGTAACTTCCGATGAT+TGG | 0.403909 | 1_3:-63572174 | None:intergenic |
ATAGATATGGCAAGGAATAA+AGG | 0.406136 | 1_3:+63575362 | Msa0132500:intron |
TTTGTTCTTTCTGAGGTTGT+TGG | 0.414603 | 1_3:+63571863 | Msa0132500:five_prime_UTR |
TAGCATGACGGCGGCGGCGG+CGG | 0.417607 | 1_3:+63579943 | Msa0132500:CDS |
GGCCATTGCGAAGAGACTTC+AGG | 0.423276 | 1_3:+63573869 | Msa0132500:CDS |
AATGTTTACTTGCAGGAGTA+TGG | 0.427510 | 1_3:+63574365 | Msa0132500:intron |
ATAAATCTAGCTGATTGTAT+TGG | 0.432104 | 1_3:+63579676 | Msa0132500:intron |
TCAGAAAGCGTTGTTCAAAT+CGG | 0.434898 | 1_3:+63579725 | Msa0132500:CDS |
CTACCGACTCTTCAAAAGAT+TGG | 0.435951 | 1_3:-63573746 | None:intergenic |
ATTGCAAACCCTCCCGCATA+TGG | 0.441124 | 1_3:+63575515 | Msa0132500:CDS |
GTACATCTTGCTGAAGCCCT+TGG | 0.442502 | 1_3:+63575926 | Msa0132500:CDS |
TTGACCTTGATACTTGAATT+GGG | 0.443305 | 1_3:+63571691 | Msa0132500:five_prime_UTR |
ATCTCATCTTCAGCTATTAG+TGG | 0.443955 | 1_3:-63573354 | None:intergenic |
ATATGCATTTCCCCACCCTT+TGG | 0.444072 | 1_3:+63576238 | Msa0132500:CDS |
GGGTTTCTCTCAGTTCCAAT+AGG | 0.445007 | 1_3:-63573333 | None:intergenic |
AAGACATTTGTAAGGTCAGC+TGG | 0.446615 | 1_3:+63574422 | Msa0132500:CDS |
TGATTGTGATGGGTTGTAAT+GGG | 0.449292 | 1_3:+63572008 | Msa0132500:exon |
TGATTTGATTCAACAGAAGA+AGG | 0.449504 | 1_3:+63579853 | Msa0132500:CDS |
TCATAGCATGACGGCGGCGG+CGG | 0.449724 | 1_3:+63579940 | Msa0132500:CDS |
CTTTGTGTTTCAATGACTGT+TGG | 0.451980 | 1_3:+63571771 | Msa0132500:five_prime_UTR |
GAACAAAACACAAAGTTCCT+TGG | 0.452755 | 1_3:-63571847 | None:intergenic |
TAATTGTGGATCTACTGATA+TGG | 0.454178 | 1_3:+63576412 | Msa0132500:CDS |
GCGCGTGTTTCTCAAAGTGC+TGG | 0.467890 | 1_3:+63576260 | Msa0132500:CDS |
TTCCAAATCAGGTGCTGTGC+AGG | 0.469128 | 1_3:-63575462 | None:intergenic |
ACAGCACCTGATTTGGAAAC+CGG | 0.472297 | 1_3:+63575467 | Msa0132500:CDS |
ATCTAGCTGATTGTATTGGT+TGG | 0.472952 | 1_3:+63579680 | Msa0132500:intron |
CTTCCCCTCTCCTTAGATGA+AGG | 0.474030 | 1_3:-63572151 | None:intergenic |
CTAATTTCAAGACATTTGTA+AGG | 0.475925 | 1_3:+63574414 | Msa0132500:CDS |
GTGATTGTGATGGGTTGTAA+TGG | 0.478088 | 1_3:+63572007 | Msa0132500:exon |
CAAATTGTCATACTTGTGGT+TGG | 0.479952 | 1_3:+63573819 | Msa0132500:CDS |
TTTGTGTTTCAATGACTGTT+GGG | 0.487621 | 1_3:+63571772 | Msa0132500:five_prime_UTR |
CGGCATTCCCTTCACAGCTC+AGG | 0.488148 | 1_3:+63575487 | Msa0132500:CDS |
AAATCAGGTGCTGTGCAGGC+TGG | 0.495055 | 1_3:-63575458 | None:intergenic |
AGGAGTATGGTCATCGCGTT+AGG | 0.502334 | 1_3:+63574378 | Msa0132500:intron |
CAATGACTGTTGGGTAGTAG+TGG | 0.507124 | 1_3:+63571781 | Msa0132500:five_prime_UTR |
CTCTTCGCAATGGCCACAAA+AGG | 0.507208 | 1_3:-63573861 | None:intergenic |
AATAAAGGTCTGATTCCGTC+TGG | 0.507240 | 1_3:+63575377 | Msa0132500:CDS |
GCAGCTGTCTTATATAATTG+TGG | 0.509774 | 1_3:+63576398 | Msa0132500:intron |
ATAACCCAATTCAAGTATCA+AGG | 0.515858 | 1_3:-63571695 | None:intergenic |
CTGATTATTGTGATTGTGAT+GGG | 0.520454 | 1_3:+63571998 | Msa0132500:exon |
AAGATGAGGACTCCACATAT+AGG | 0.521439 | 1_3:-63576541 | None:intergenic |
GAAGTAGTTGAAGATGAAAA+GGG | 0.523347 | 1_3:+63572049 | Msa0132500:CDS |
GAAACACGCGCCAAAGGGTG+GGG | 0.525242 | 1_3:-63576248 | None:intergenic |
TTTAAATAATAGATATGGCA+AGG | 0.525373 | 1_3:+63575354 | Msa0132500:intron |
TTTGAGAAACACGCGCCAAA+GGG | 0.526660 | 1_3:-63576253 | None:intergenic |
GGTGTAAATTTCTATCCTCT+GGG | 0.527341 | 1_3:+63574443 | Msa0132500:CDS |
AAATCATAGCATGACGGCGG+CGG | 0.529982 | 1_3:+63579937 | Msa0132500:CDS |
TCTCATCTTCAGCTATTAGT+GGG | 0.530855 | 1_3:-63573353 | None:intergenic |
ATTGAAACACAAAGAACGTT+CGG | 0.531146 | 1_3:-63571762 | None:intergenic |
AATAATAGCCTGAGCTGTGA+AGG | 0.532487 | 1_3:-63575495 | None:intergenic |
ATTTACCAACTGCCTATATG+TGG | 0.534491 | 1_3:+63576529 | Msa0132500:CDS |
TTCTAATCACTCACCATATG+CGG | 0.534904 | 1_3:-63575528 | None:intergenic |
GGGTGGTGATCCTCGAGTAT+TGG | 0.539944 | 1_3:+63574463 | Msa0132500:CDS |
TACATGCTGAAGTATGCAAT+AGG | 0.541098 | 1_3:-63576489 | None:intergenic |
GTTACAAATTGTCATACTTG+TGG | 0.543374 | 1_3:+63573815 | Msa0132500:CDS |
CAGAAAAGAGAGGGCTTCGA+AGG | 0.543506 | 1_3:+63573397 | Msa0132500:CDS |
ACAAATTAAACTCACGTCCA+TGG | 0.545172 | 1_3:-63575977 | None:intergenic |
ATTGTGAAGAAGATGTGAAT+AGG | 0.545573 | 1_3:-63575953 | None:intergenic |
TTCACCTTCATCTAAGGAGA+GGG | 0.547895 | 1_3:+63572147 | Msa0132500:CDS |
AGAAACACGCGCCAAAGGGT+GGG | 0.550349 | 1_3:-63576249 | None:intergenic |
CTTTGAGAAACACGCGCCAA+AGG | 0.550897 | 1_3:-63576254 | None:intergenic |
ACTGATTATTGTGATTGTGA+TGG | 0.554723 | 1_3:+63571997 | Msa0132500:exon |
GAGAAACACGCGCCAAAGGG+TGG | 0.555092 | 1_3:-63576250 | None:intergenic |
ATACTTGTGGTTGGAACTAG+AGG | 0.557305 | 1_3:+63573828 | Msa0132500:CDS |
TACAGAGTTGAGTTTGAGAA+CGG | 0.560553 | 1_3:+63579776 | Msa0132500:CDS |
GGTGATCCTCGAGTATTGGC+AGG | 0.560631 | 1_3:+63574467 | Msa0132500:CDS |
CTGAGCTGTGAAGGGAATGC+CGG | 0.567875 | 1_3:-63575486 | None:intergenic |
TCTAATCACTCACCATATGC+GGG | 0.570202 | 1_3:-63575527 | None:intergenic |
TTGTTGGTTACTGTTTCTTG+AGG | 0.570659 | 1_3:+63577022 | Msa0132500:CDS |
CAGACTGTCAGAGGATGAGA+AGG | 0.575642 | 1_3:+63573437 | Msa0132500:CDS |
ACATCTTCTTCACAATGCCA+TGG | 0.575887 | 1_3:+63575960 | Msa0132500:CDS |
CTTGGTTTCGGAACAAGATG+AGG | 0.576658 | 1_3:-63576555 | None:intergenic |
TCAATCGTTTAGGAAGAATG+AGG | 0.577293 | 1_3:+63579883 | Msa0132500:CDS |
CTTTGGTTAGATATTTCAGT+CGG | 0.578080 | 1_3:-63575401 | None:intergenic |
TTTGAAGAGTCGGTAGCGAG+CGG | 0.585117 | 1_3:+63573753 | Msa0132500:CDS |
ATTCAAATAAATCAGTTCCA+CGG | 0.594368 | 1_3:+63573793 | Msa0132500:CDS |
GGAGAGGGGAAGCCAATCAT+CGG | 0.595295 | 1_3:+63572162 | Msa0132500:CDS |
CTGATATGGTGGGGAATGCG+AGG | 0.599449 | 1_3:+63576426 | Msa0132500:CDS |
GATATTTCAGTCGGTCCAGA+CGG | 0.599453 | 1_3:-63575392 | None:intergenic |
CAATCGTTTAGGAAGAATGA+GGG | 0.599670 | 1_3:+63579884 | Msa0132500:CDS |
ACATCTTGCTGAAGCCCTTG+GGG | 0.602070 | 1_3:+63575928 | Msa0132500:CDS |
TGCCTGAAGTCTCTTCGCAA+TGG | 0.604421 | 1_3:-63573871 | None:intergenic |
TAACCAAAGAAAGCAGCTGA+AGG | 0.605409 | 1_3:+63575415 | Msa0132500:CDS |
TTGTGGATCTACTGATATGG+TGG | 0.606875 | 1_3:+63576415 | Msa0132500:CDS |
CAATTCAAGTATCAAGGTCA+AGG | 0.607566 | 1_3:-63571689 | None:intergenic |
AATCCAAAATATAAAGGAGG+CGG | 0.607992 | 1_3:-63577099 | None:intergenic |
GGGTGGGGAAATGCATATGT+TGG | 0.608825 | 1_3:-63576233 | None:intergenic |
GATCAATGACAGAAAAGAGA+GGG | 0.613379 | 1_3:+63573388 | Msa0132500:CDS |
ATAATAGCCTGAGCTGTGAA+GGG | 0.613818 | 1_3:-63575494 | None:intergenic |
AATATTGGACAGACTGTCAG+AGG | 0.625882 | 1_3:+63573428 | Msa0132500:CDS |
AGATGTGAATAGGCACCCCA+AGG | 0.626183 | 1_3:-63575943 | None:intergenic |
GTTACTTCTTTGCCACACAA+AGG | 0.626419 | 1_3:+63572187 | Msa0132500:CDS |
TGTGGATCTACTGATATGGT+GGG | 0.628477 | 1_3:+63576416 | Msa0132500:CDS |
ATCACTCACCATATGCGGGA+GGG | 0.634649 | 1_3:-63575523 | None:intergenic |
GGACTCCACATATAGGCAGT+TGG | 0.634912 | 1_3:-63576534 | None:intergenic |
GATAAGTTAGTTAGTGTGAG+AGG | 0.638386 | 1_3:+63572091 | Msa0132500:CDS |
TGAGTCAAACTATCAACCAC+GGG | 0.640938 | 1_3:+63577047 | Msa0132500:CDS |
GCATACTTCAGCATGTATCG+TGG | 0.647313 | 1_3:+63576495 | Msa0132500:CDS |
AATCACTCACCATATGCGGG+AGG | 0.647697 | 1_3:-63575524 | None:intergenic |
GTAAATTTCTATCCTCTGGG+TGG | 0.653398 | 1_3:+63574446 | Msa0132500:CDS |
ATTCACCTTCATCTAAGGAG+AGG | 0.655648 | 1_3:+63572146 | Msa0132500:CDS |
AGTATGACAATTTGTAACCG+TGG | 0.656264 | 1_3:-63573810 | None:intergenic |
CATCTTGTTCCGAAACCAAG+TGG | 0.657325 | 1_3:+63576558 | Msa0132500:CDS |
AGATCAATGACAGAAAAGAG+AGG | 0.660701 | 1_3:+63573387 | Msa0132500:CDS |
TTACATCCTGCCAATACTCG+AGG | 0.661630 | 1_3:-63574473 | None:intergenic |
GATGTGAATAGGCACCCCAA+GGG | 0.663373 | 1_3:-63575942 | None:intergenic |
AATGAGCACAAACCTTTGTG+TGG | 0.663563 | 1_3:-63572199 | None:intergenic |
CCAAATCCAAAATATAAAGG+AGG | 0.663826 | 1_3:-63577102 | None:intergenic |
CATTGGAGAAAATCCTCCCG+TGG | 0.667741 | 1_3:-63577063 | None:intergenic |
ATGAGTCAAACTATCAACCA+CGG | 0.669416 | 1_3:+63577046 | Msa0132500:CDS |
TCACCTTCATCTAAGGAGAG+GGG | 0.681355 | 1_3:+63572148 | Msa0132500:CDS |
AGAACAAAATCATAGCATGA+CGG | 0.684000 | 1_3:+63579931 | Msa0132500:CDS |
GTCAAACTATCAACCACGGG+AGG | 0.710066 | 1_3:+63577050 | Msa0132500:CDS |
ACAAAATCATAGCATGACGG+CGG | 0.727827 | 1_3:+63579934 | Msa0132500:CDS |
TATTCGTAGAATACTCATCG+AGG | 0.734578 | 1_3:+63579826 | Msa0132500:CDS |
ACTCGAGGATCACCACCCAG+AGG | 0.762040 | 1_3:-63574458 | None:intergenic |
GTGGATCTACTGATATGGTG+GGG | 0.771351 | 1_3:+63576417 | Msa0132500:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTAAATAAATTATTAAA+AGG | - | chr1_3:63574505-63574524 | None:intergenic | 0.0% |
!! | TTAATAATTAATTTATATTT+CGG | + | chr1_3:63574525-63574544 | Msa0132500:intron | 0.0% |
!! | AGTTATTTAAATAATAGATA+TGG | + | chr1_3:63575349-63575368 | Msa0132500:intron | 10.0% |
!!! | TTTAATTATATTTTTGATTC+CGG | + | chr1_3:63575891-63575910 | Msa0132500:intron | 10.0% |
!!! | TACATTTTTTAAAAATTTAC+AGG | + | chr1_3:63576210-63576229 | Msa0132500:intron | 10.0% |
!!! | ATATTTTTATGAATAATTTC+TGG | + | chr1_3:63576332-63576351 | Msa0132500:intron | 10.0% |
!! | AAAAATTTACAGAAAAAAAA+AGG | - | chr1_3:63577199-63577218 | None:intergenic | 10.0% |
!! | AAAACAACAAAAATATAAAA+GGG | + | chr1_3:63578307-63578326 | Msa0132500:intron | 10.0% |
!!! | ATTTTTTGTTTTTGAAAACT+TGG | + | chr1_3:63572584-63572603 | Msa0132500:intron | 15.0% |
!!! | TATACTTTAAGAAAAAGAAA+AGG | - | chr1_3:63572881-63572900 | None:intergenic | 15.0% |
!!! | ATACATTTTGTTATATTCAA+TGG | + | chr1_3:63573972-63573991 | Msa0132500:intron | 15.0% |
!!! | TGTTTATGAATTTTACATTT+TGG | + | chr1_3:63574289-63574308 | Msa0132500:intron | 15.0% |
!! | TAATATTACTTAATTTCTCT+TGG | + | chr1_3:63574674-63574693 | Msa0132500:intron | 15.0% |
!!! | TTATTTGGAAGTTTTTATAA+GGG | - | chr1_3:63575062-63575081 | None:intergenic | 15.0% |
!! | ACATACTTAAAAACAAAAAT+AGG | - | chr1_3:63575239-63575258 | None:intergenic | 15.0% |
!! | TATATACAAAAAATTACACA+TGG | + | chr1_3:63575620-63575639 | Msa0132500:intron | 15.0% |
!! | ATATACAAAAAATTACACAT+GGG | + | chr1_3:63575621-63575640 | Msa0132500:intron | 15.0% |
!! | ATAATTAAAAATTATGTGCT+AGG | - | chr1_3:63575880-63575899 | None:intergenic | 15.0% |
!! | TAAAGATATAAAATCAATCA+TGG | + | chr1_3:63576909-63576928 | Msa0132500:intron | 15.0% |
!! | AAAGATATAAAATCAATCAT+GGG | + | chr1_3:63576910-63576929 | Msa0132500:intron | 15.0% |
!! | CAAAACAACAAAAATATAAA+AGG | + | chr1_3:63578306-63578325 | Msa0132500:intron | 15.0% |
!! | AAACAACAAAAATATAAAAG+GGG | + | chr1_3:63578308-63578327 | Msa0132500:intron | 15.0% |
!! | ATAAACTACAAATTAACTAA+CGG | - | chr1_3:63578468-63578487 | None:intergenic | 15.0% |
!! | ATGAATCTTTCATTATATTA+TGG | + | chr1_3:63578930-63578949 | Msa0132500:intron | 15.0% |
!! | TGAATCTTTCATTATATTAT+GGG | + | chr1_3:63578931-63578950 | Msa0132500:intron | 15.0% |
!!! | AAACTTTTGAGTTATAAAAT+CGG | + | chr1_3:63579749-63579768 | Msa0132500:CDS | 15.0% |
!! | TTATAGTTGGAAATTCAAAA+AGG | + | chr1_3:63571722-63571741 | Msa0132500:five_prime_UTR | 20.0% |
!! | CTATGCTATTATATACAATA+AGG | - | chr1_3:63572360-63572379 | None:intergenic | 20.0% |
!! | TAGATATGTCATAAGTATAT+AGG | + | chr1_3:63572523-63572542 | Msa0132500:intron | 20.0% |
!! | TCTTAAAGTATATTATACTC+TGG | + | chr1_3:63572889-63572908 | Msa0132500:intron | 20.0% |
!! | ACAAAAACTTCAACAAAATT+GGG | - | chr1_3:63572951-63572970 | None:intergenic | 20.0% |
!! | TTTGTCAACATAAATAGATT+TGG | + | chr1_3:63572966-63572985 | Msa0132500:intron | 20.0% |
!! | GGTTCTTTGTAAAAATAATT+AGG | + | chr1_3:63572987-63573006 | Msa0132500:intron | 20.0% |
!!! | GATATGTTATTTAGTACAAA+GGG | + | chr1_3:63573075-63573094 | Msa0132500:intron | 20.0% |
!! | AGAAATCAATCTCTTAATAA+AGG | - | chr1_3:63573258-63573277 | None:intergenic | 20.0% |
!!! | AGAGATTGATTTCTTATAAT+TGG | + | chr1_3:63573264-63573283 | Msa0132500:intron | 20.0% |
!! | TTCTTAAATTCTGTTCATAA+AGG | + | chr1_3:63573288-63573307 | Msa0132500:intron | 20.0% |
!!! | TTTTGTTCCTTAAATTAACA+CGG | + | chr1_3:63574031-63574050 | Msa0132500:intron | 20.0% |
!!! | ATAGCTTTATTTTTGTAAGT+TGG | + | chr1_3:63574159-63574178 | Msa0132500:intron | 20.0% |
!!! | TAGCTTTATTTTTGTAAGTT+GGG | + | chr1_3:63574160-63574179 | Msa0132500:intron | 20.0% |
!!! | TTTTGAACCAAATTATTTGA+AGG | + | chr1_3:63574240-63574259 | Msa0132500:intron | 20.0% |
!! | TTTGAACCAAATTATTTGAA+GGG | + | chr1_3:63574241-63574260 | Msa0132500:intron | 20.0% |
!! | TTAAGTAATATTAAACACCA+TGG | - | chr1_3:63574667-63574686 | None:intergenic | 20.0% |
!! | ATGATTAACACTTGAAAATT+TGG | - | chr1_3:63574801-63574820 | None:intergenic | 20.0% |
!!! | AATTTTCAAGTGTTAATCAT+AGG | + | chr1_3:63574801-63574820 | Msa0132500:intron | 20.0% |
!!! | TGTTGAAGTATCTATTTATA+CGG | - | chr1_3:63574832-63574851 | None:intergenic | 20.0% |
!!! | GTTATTTGGAAGTTTTTATA+AGG | - | chr1_3:63575063-63575082 | None:intergenic | 20.0% |
!! | TTTAAGCATATATAATGAGT+TGG | - | chr1_3:63575314-63575333 | None:intergenic | 20.0% |
!! | TTTAAATAATAGATATGGCA+AGG | + | chr1_3:63575354-63575373 | Msa0132500:intron | 20.0% |
!! | TTTATTTGATCAAGTAAGAT+GGG | - | chr1_3:63575586-63575605 | None:intergenic | 20.0% |
!!! | TTTTATTTGATCAAGTAAGA+TGG | - | chr1_3:63575587-63575606 | None:intergenic | 20.0% |
!! | ATCAACTATAAAAGAACTAT+TGG | - | chr1_3:63575735-63575754 | None:intergenic | 20.0% |
!!! | TATAGTTGATTTTTCTTTCA+AGG | + | chr1_3:63575745-63575764 | Msa0132500:intron | 20.0% |
!!! | CGTTTGAAAAAGTATAATTA+AGG | - | chr1_3:63576623-63576642 | None:intergenic | 20.0% |
!!! | ATCATTCAAGTATTTGAAAT+AGG | + | chr1_3:63576655-63576674 | Msa0132500:intron | 20.0% |
!!! | TTGTGAGAATATAAAGTTTT+TGG | + | chr1_3:63576706-63576725 | Msa0132500:intron | 20.0% |
!!! | AATAACTTTGAAGATTAAAC+AGG | - | chr1_3:63576825-63576844 | None:intergenic | 20.0% |
!!! | AGAAAAAAAAAGGCATTAAT+AGG | - | chr1_3:63577189-63577208 | None:intergenic | 20.0% |
!!! | TTTCTGTAAATTTTTCTGTT+TGG | + | chr1_3:63577204-63577223 | Msa0132500:intron | 20.0% |
!!! | GATTCATTAGCTTAAATATA+GGG | - | chr1_3:63577289-63577308 | None:intergenic | 20.0% |
!!! | TGATTCATTAGCTTAAATAT+AGG | - | chr1_3:63577290-63577309 | None:intergenic | 20.0% |
!! | ATATTTAAGCTAATGAATCA+TGG | + | chr1_3:63577290-63577309 | Msa0132500:intron | 20.0% |
!!! | TTTTCACTTTTACATCTAAA+TGG | + | chr1_3:63577435-63577454 | Msa0132500:intron | 20.0% |
!! | ATAAATAGTACAAATGTACA+AGG | - | chr1_3:63577566-63577585 | None:intergenic | 20.0% |
!! | GCTGTTATCATAATATAAAT+AGG | + | chr1_3:63577596-63577615 | Msa0132500:intron | 20.0% |
!! | CAGAAGTAAACAAAAAATAA+AGG | + | chr1_3:63578392-63578411 | Msa0132500:intron | 20.0% |
!! | GAATCTTTCATTATATTATG+GGG | + | chr1_3:63578932-63578951 | Msa0132500:intron | 20.0% |
!! | TTTATATAATCTTGTGTTGT+TGG | - | chr1_3:63578963-63578982 | None:intergenic | 20.0% |
!! | ATCATTAATATACTCTTAAG+TGG | - | chr1_3:63578991-63579010 | None:intergenic | 20.0% |
!!! | ACTTAAGAGTATATTAATGA+TGG | + | chr1_3:63578990-63579009 | Msa0132500:intron | 20.0% |
!!! | TATTGATTCTTGTGTAAATT+TGG | - | chr1_3:63579272-63579291 | None:intergenic | 20.0% |
!! | AAAGTTGTGAGTTATAAAAT+CGG | - | chr1_3:63579563-63579582 | None:intergenic | 20.0% |
! | TTACCATATCCTATGAATTT+AGG | + | chr1_3:63572467-63572486 | Msa0132500:intron | 25.0% |
! | TTATTCCTTCCTAAATTCAT+AGG | - | chr1_3:63572479-63572498 | None:intergenic | 25.0% |
! | TAGGATCAATGTAAAGATTT+AGG | + | chr1_3:63572542-63572561 | Msa0132500:intron | 25.0% |
! | AGGATCAATGTAAAGATTTA+GGG | + | chr1_3:63572543-63572562 | Msa0132500:intron | 25.0% |
! | AAAGCAATGATAAAGCATAA+AGG | - | chr1_3:63572825-63572844 | None:intergenic | 25.0% |
! | GACAAAAACTTCAACAAAAT+TGG | - | chr1_3:63572952-63572971 | None:intergenic | 25.0% |
! | TGTAAAAATAATTAGGTGCA+TGG | + | chr1_3:63572994-63573013 | Msa0132500:intron | 25.0% |
! | GTAAAAATAATTAGGTGCAT+GGG | + | chr1_3:63572995-63573014 | Msa0132500:intron | 25.0% |
! | AACATATCCCAAAACAATAA+CGG | - | chr1_3:63573063-63573082 | None:intergenic | 25.0% |
!! | GGATATGTTATTTAGTACAA+AGG | + | chr1_3:63573074-63573093 | Msa0132500:intron | 25.0% |
! | GTATTGTCAATTGAAAATAG+TGG | - | chr1_3:63573160-63573179 | None:intergenic | 25.0% |
!! | CTATTTTCAATTGACAATAC+CGG | + | chr1_3:63573160-63573179 | Msa0132500:intron | 25.0% |
!! | TATTTTCAATTGACAATACC+GGG | + | chr1_3:63573161-63573180 | Msa0132500:intron | 25.0% |
! | AAATTCTGTTCATAAAGGTT+TGG | + | chr1_3:63573293-63573312 | Msa0132500:intron | 25.0% |
! | TAGTGAAGATACAAAAAGAT+GGG | + | chr1_3:63573667-63573686 | Msa0132500:CDS | 25.0% |
! | ATTCAAATAAATCAGTTCCA+CGG | + | chr1_3:63573793-63573812 | Msa0132500:CDS | 25.0% |
! | GTGTTAATTTAAGGAACAAA+AGG | - | chr1_3:63574032-63574051 | None:intergenic | 25.0% |
! | TTTGTTCCTTAAATTAACAC+GGG | + | chr1_3:63574032-63574051 | Msa0132500:intron | 25.0% |
!!! | AGCTTTATTTTTGTAAGTTG+GGG | + | chr1_3:63574161-63574180 | Msa0132500:intron | 25.0% |
! | TTAGTTCAAGTATGAAAGTA+TGG | - | chr1_3:63574341-63574360 | None:intergenic | 25.0% |
! | CTAATTTCAAGACATTTGTA+AGG | + | chr1_3:63574414-63574433 | Msa0132500:CDS | 25.0% |
! | AAGTTAAACAAAGTACAAGT+AGG | - | chr1_3:63574551-63574570 | None:intergenic | 25.0% |
! | ACCTGTTAAATTTAGTATTC+AGG | + | chr1_3:63574611-63574630 | Msa0132500:intron | 25.0% |
! | ACCTGAATACTAAATTTAAC+AGG | - | chr1_3:63574615-63574634 | None:intergenic | 25.0% |
!! | CATTTTATAGTAATAGCTTG+AGG | - | chr1_3:63574772-63574791 | None:intergenic | 25.0% |
! | TAAATAACCAATTGTAGTGT+AGG | + | chr1_3:63574979-63574998 | Msa0132500:intron | 25.0% |
! | AAATAACCAATTGTAGTGTA+GGG | + | chr1_3:63574980-63574999 | Msa0132500:intron | 25.0% |
!! | TAATGAGTTGGATAGAAAAT+GGG | - | chr1_3:63575302-63575321 | None:intergenic | 25.0% |
!! | ATAATGAGTTGGATAGAAAA+TGG | - | chr1_3:63575303-63575322 | None:intergenic | 25.0% |
!!! | ATTAGTTTTGCCATCTAAAA+AGG | - | chr1_3:63575682-63575701 | None:intergenic | 25.0% |
! | CTTTGCAATAAAAGAACAAT+TGG | - | chr1_3:63575779-63575798 | None:intergenic | 25.0% |
! | TGAAATATTGTTTCAGCAAA+AGG | - | chr1_3:63576299-63576318 | None:intergenic | 25.0% |
! | TACTACACTATATAGTTTAG+TGG | - | chr1_3:63576799-63576818 | None:intergenic | 25.0% |
! | GTTAAAAGTCATTATCCTTA+AGG | - | chr1_3:63576971-63576990 | None:intergenic | 25.0% |
!!! | TTTTAACTAATTTGCAGACT+GGG | + | chr1_3:63576984-63577003 | Msa0132500:intron | 25.0% |
!!! | TTTCTCCAATGGATTAAAAA+AGG | + | chr1_3:63577075-63577094 | Msa0132500:CDS | 25.0% |
!!! | CTCCTTTATATTTTGGATTT+GGG | + | chr1_3:63577103-63577122 | Msa0132500:CDS | 25.0% |
! | AACAAATACTGACACTATAA+TGG | - | chr1_3:63577248-63577267 | None:intergenic | 25.0% |
! | ATAAGTTGTTAAACCAAACA+GGG | - | chr1_3:63577622-63577641 | None:intergenic | 25.0% |
! | AATAAGTTGTTAAACCAAAC+AGG | - | chr1_3:63577623-63577642 | None:intergenic | 25.0% |
! | NNNNTTTGAGCTTATCTACT+GGG | - | chr1_3:63577858-63577877 | None:intergenic | 25.0% |
! | NNNNNTTTGAGCTTATCTAC+TGG | - | chr1_3:63577859-63577878 | None:intergenic | 25.0% |
!! | ATCTAGATCTTTTAGTAATG+TGG | + | chr1_3:63577992-63578011 | Msa0132500:intron | 25.0% |
! | TGGATATTGTTAAAGTTTGT+AGG | + | chr1_3:63578051-63578070 | Msa0132500:intron | 25.0% |
!! | AAAGTCACTTTATGTAGATT+AGG | - | chr1_3:63578128-63578147 | None:intergenic | 25.0% |
! | TATATGAAAATGAACCAGTA+TGG | + | chr1_3:63578217-63578236 | Msa0132500:intron | 25.0% |
!!! | ATTTTTGTTGTTTTGTGTGT+TGG | - | chr1_3:63578301-63578320 | None:intergenic | 25.0% |
! | AAATTAACTAACGGTAGTTT+GGG | - | chr1_3:63578459-63578478 | None:intergenic | 25.0% |
!!! | TTGAAAAGATTTTGAAAGGT+AGG | - | chr1_3:63578626-63578645 | None:intergenic | 25.0% |
!!! | AAAATTTGCTGAGGAAAATT+TGG | - | chr1_3:63578834-63578853 | None:intergenic | 25.0% |
!!! | ATCTACATAAAAATTTGCTG+AGG | - | chr1_3:63578843-63578862 | None:intergenic | 25.0% |
! | ATACTTGTAATTTATTGAGG+TGG | - | chr1_3:63579245-63579264 | None:intergenic | 25.0% |
! | CAGATACTTGTAATTTATTG+AGG | - | chr1_3:63579248-63579267 | None:intergenic | 25.0% |
! | TATCATCCAATCAATACAAT+CGG | + | chr1_3:63579623-63579642 | Msa0132500:intron | 25.0% |
! | CTAGATTTATGGATACAATT+TGG | + | chr1_3:63579646-63579665 | Msa0132500:intron | 25.0% |
! | AATACAATCAGCTAGATTTA+TGG | - | chr1_3:63579677-63579696 | None:intergenic | 25.0% |
! | ATAAATCTAGCTGATTGTAT+TGG | + | chr1_3:63579676-63579695 | Msa0132500:intron | 25.0% |
TTGACCTTGATACTTGAATT+GGG | + | chr1_3:63571691-63571710 | Msa0132500:five_prime_UTR | 30.0% | |
ATAACCCAATTCAAGTATCA+AGG | - | chr1_3:63571698-63571717 | None:intergenic | 30.0% | |
ATTGAAACACAAAGAACGTT+CGG | - | chr1_3:63571765-63571784 | None:intergenic | 30.0% | |
TTTGTGTTTCAATGACTGTT+GGG | + | chr1_3:63571772-63571791 | Msa0132500:five_prime_UTR | 30.0% | |
!! | TTTGTGTTTTGTTCTTTCTG+AGG | + | chr1_3:63571856-63571875 | Msa0132500:five_prime_UTR | 30.0% |
ACTGATTATTGTGATTGTGA+TGG | + | chr1_3:63571997-63572016 | Msa0132500:exon | 30.0% | |
CTGATTATTGTGATTGTGAT+GGG | + | chr1_3:63571998-63572017 | Msa0132500:exon | 30.0% | |
AGAAGTAGTTGAAGATGAAA+AGG | + | chr1_3:63572048-63572067 | Msa0132500:CDS | 30.0% | |
GAAGTAGTTGAAGATGAAAA+GGG | + | chr1_3:63572049-63572068 | Msa0132500:CDS | 30.0% | |
TGAAAAGGGTCTAAGAAAAA+TGG | + | chr1_3:63572063-63572082 | Msa0132500:CDS | 30.0% | |
CTTCCTAAATTCATAGGATA+TGG | - | chr1_3:63572473-63572492 | None:intergenic | 30.0% | |
CATATCCTATGAATTTAGGA+AGG | + | chr1_3:63572471-63572490 | Msa0132500:intron | 30.0% | |
GGATCAATGTAAAGATTTAG+GGG | + | chr1_3:63572544-63572563 | Msa0132500:intron | 30.0% | |
GATCAATGTAAAGATTTAGG+GGG | + | chr1_3:63572545-63572564 | Msa0132500:intron | 30.0% | |
!! | TTTTTGAAAACTTGGTATCC+AGG | + | chr1_3:63572592-63572611 | Msa0132500:intron | 30.0% |
!!! | TATACTCTGGATTGCTTTTT+AGG | + | chr1_3:63572902-63572921 | Msa0132500:intron | 30.0% |
! | TCAACAAAATTGGGCTTTTT+AGG | - | chr1_3:63572942-63572961 | None:intergenic | 30.0% |
! | GAACAAACCGTTATTGTTTT+GGG | + | chr1_3:63573053-63573072 | Msa0132500:intron | 30.0% |
TTGTCAAATAGTGACTATTG+CGG | + | chr1_3:63573098-63573117 | Msa0132500:intron | 30.0% | |
! | ATTTTCAATTGACAATACCG+GGG | + | chr1_3:63573162-63573181 | Msa0132500:intron | 30.0% |
ATCAATCTCTTAATAAAGGC+AGG | - | chr1_3:63573254-63573273 | None:intergenic | 30.0% | |
! | AAGCACAACCTTGAAATTTT+AGG | - | chr1_3:63573492-63573511 | None:intergenic | 30.0% |
! | CATCTTTTTGTATCTTCACT+AGG | - | chr1_3:63573668-63573687 | None:intergenic | 30.0% |
CTAGTGAAGATACAAAAAGA+TGG | + | chr1_3:63573666-63573685 | Msa0132500:CDS | 30.0% | |
GTTACAAATTGTCATACTTG+TGG | + | chr1_3:63573815-63573834 | Msa0132500:CDS | 30.0% | |
ACTGAGCTTGTAAATTAAAC+TGG | + | chr1_3:63574089-63574108 | Msa0132500:intron | 30.0% | |
CTGAGCTTGTAAATTAAACT+GGG | + | chr1_3:63574090-63574109 | Msa0132500:intron | 30.0% | |
AAACTGGGTTTCTAAATTTC+AGG | + | chr1_3:63574105-63574124 | Msa0132500:intron | 30.0% | |
AACTGGGTTTCTAAATTTCA+GGG | + | chr1_3:63574106-63574125 | Msa0132500:intron | 30.0% | |
ATTTCAGGGAAGACATATTA+TGG | + | chr1_3:63574120-63574139 | Msa0132500:intron | 30.0% | |
TTGCTTCCCTTCAAATAATT+TGG | - | chr1_3:63574250-63574269 | None:intergenic | 30.0% | |
TAATACCAATGTTTACTTGC+AGG | + | chr1_3:63574358-63574377 | Msa0132500:intron | 30.0% | |
GATATAAAGCAGCTAAAAGA+GGG | - | chr1_3:63574586-63574605 | None:intergenic | 30.0% | |
!! | CTCTTTTAGCTGCTTTATAT+CGG | + | chr1_3:63574585-63574604 | Msa0132500:intron | 30.0% |
GACTTACGACAAATTTGAAT+TGG | + | chr1_3:63574879-63574898 | Msa0132500:intron | 30.0% | |
CGACAAATTTGAATTGGATA+TGG | + | chr1_3:63574885-63574904 | Msa0132500:intron | 30.0% | |
!!! | AAGAGCTAATTGTTTTTGCT+TGG | - | chr1_3:63574930-63574949 | None:intergenic | 30.0% |
! | AAGCAAAAACAATTAGCTCT+TGG | + | chr1_3:63574929-63574948 | Msa0132500:intron | 30.0% |
TAAGGGATCATTATGTTTAG+AGG | - | chr1_3:63575045-63575064 | None:intergenic | 30.0% | |
! | AAGCTTTGGTTGTTGTTATT+TGG | - | chr1_3:63575077-63575096 | None:intergenic | 30.0% |
AATAACAACAACCAAAGCTT+AGG | + | chr1_3:63575077-63575096 | Msa0132500:intron | 30.0% | |
TTAGCTTAATCTTCAATGCA+AGG | - | chr1_3:63575206-63575225 | None:intergenic | 30.0% | |
ATAGATATGGCAAGGAATAA+AGG | + | chr1_3:63575362-63575381 | Msa0132500:intron | 30.0% | |
CTTTGGTTAGATATTTCAGT+CGG | - | chr1_3:63575404-63575423 | None:intergenic | 30.0% | |
AAAAATTACACATGGGTGAA+AGG | + | chr1_3:63575628-63575647 | Msa0132500:intron | 30.0% | |
! | TAATGTTTGCAAGTTTTCCA+AGG | + | chr1_3:63575852-63575871 | Msa0132500:intron | 30.0% |
ATTGTGAAGAAGATGTGAAT+AGG | - | chr1_3:63575956-63575975 | None:intergenic | 30.0% | |
TTATATAAGACAGCTGCAAA+TGG | - | chr1_3:63576395-63576414 | None:intergenic | 30.0% | |
TAATTGTGGATCTACTGATA+TGG | + | chr1_3:63576412-63576431 | Msa0132500:CDS | 30.0% | |
! | ATATTGTATGAAGCACCATA+AGG | + | chr1_3:63576853-63576872 | Msa0132500:intron | 30.0% |
TATCACCACAAATAACCTTA+TGG | - | chr1_3:63576871-63576890 | None:intergenic | 30.0% | |
CAACTTAAGCTTAGAAGAAT+TGG | + | chr1_3:63576944-63576963 | Msa0132500:intron | 30.0% | |
!! | CTTTTAACTAATTTGCAGAC+TGG | + | chr1_3:63576983-63577002 | Msa0132500:intron | 30.0% |
! | TTTAACTAATTTGCAGACTG+GGG | + | chr1_3:63576985-63577004 | Msa0132500:intron | 30.0% |
AATCCAAAATATAAAGGAGG+CGG | - | chr1_3:63577102-63577121 | None:intergenic | 30.0% | |
CCAAATCCAAAATATAAAGG+AGG | - | chr1_3:63577105-63577124 | None:intergenic | 30.0% | |
!! | CCTCCTTTATATTTTGGATT+TGG | + | chr1_3:63577102-63577121 | Msa0132500:CDS | 30.0% |
CTCCCAAATCCAAAATATAA+AGG | - | chr1_3:63577108-63577127 | None:intergenic | 30.0% | |
AAATACTGACACTATAATGG+TGG | - | chr1_3:63577245-63577264 | None:intergenic | 30.0% | |
TTTAAGCTAATGAATCATGG+TGG | + | chr1_3:63577293-63577312 | Msa0132500:intron | 30.0% | |
TTAAGCTAATGAATCATGGT+GGG | + | chr1_3:63577294-63577313 | Msa0132500:intron | 30.0% | |
CATATTTGTCATGTCTCTAA+TGG | - | chr1_3:63577353-63577372 | None:intergenic | 30.0% | |
TTACAATCCAAACATGTAGT+GGG | - | chr1_3:63577405-63577424 | None:intergenic | 30.0% | |
ATTACAATCCAAACATGTAG+TGG | - | chr1_3:63577406-63577425 | None:intergenic | 30.0% | |
!! | TGTTTTCATGTTCTAGACAA+GGG | - | chr1_3:63577499-63577518 | None:intergenic | 30.0% |
!! | ATGTTTTCATGTTCTAGACA+AGG | - | chr1_3:63577500-63577519 | None:intergenic | 30.0% |
TAATATAAATAGGCCCTGTT+TGG | + | chr1_3:63577606-63577625 | Msa0132500:intron | 30.0% | |
ACAACTTATTAAGCGCTTAT+AGG | + | chr1_3:63577633-63577652 | Msa0132500:intron | 30.0% | |
!!! | AAACACTTTTGAGACTGTTT+AGG | - | chr1_3:63577833-63577852 | None:intergenic | 30.0% |
!! | TCATTGCGATTTGTTGTATT+TGG | + | chr1_3:63578078-63578097 | Msa0132500:intron | 30.0% |
!! | CATTGCGATTTGTTGTATTT+GGG | + | chr1_3:63578079-63578098 | Msa0132500:intron | 30.0% |
!!! | TTTTTGGTGTTTTACCATAC+TGG | - | chr1_3:63578234-63578253 | None:intergenic | 30.0% |
!!! | TTTATGGGTGTTCGATTTTT+TGG | - | chr1_3:63578250-63578269 | None:intergenic | 30.0% |
!! | ATTTTTCTCAGGTGTTTTTG+TGG | - | chr1_3:63578372-63578391 | None:intergenic | 30.0% |
! | GTTTACTTCTGATTTTTCTC+AGG | - | chr1_3:63578383-63578402 | None:intergenic | 30.0% |
CAAATTAACTAACGGTAGTT+TGG | - | chr1_3:63578460-63578479 | None:intergenic | 30.0% | |
AGATGAAGTTAACCTTACTT+AGG | + | chr1_3:63578527-63578546 | Msa0132500:intron | 30.0% | |
GATGAAGTTAACCTTACTTA+GGG | + | chr1_3:63578528-63578547 | Msa0132500:intron | 30.0% | |
! | CCACTTGAAAAGATTTTGAA+AGG | - | chr1_3:63578630-63578649 | None:intergenic | 30.0% |
!! | CCTTTCAAAATCTTTTCAAG+TGG | + | chr1_3:63578627-63578646 | Msa0132500:intron | 30.0% |
!!! | TTCAAAATCTTTTCAAGTGG+AGG | + | chr1_3:63578630-63578649 | Msa0132500:intron | 30.0% |
!!! | TCAAAATCTTTTCAAGTGGA+GGG | + | chr1_3:63578631-63578650 | Msa0132500:intron | 30.0% |
!! | TAGTGAGTACTTGATAATGT+CGG | + | chr1_3:63578690-63578709 | Msa0132500:intron | 30.0% |
TACATGTTAGGATCTTGATT+TGG | + | chr1_3:63578867-63578886 | Msa0132500:intron | 30.0% | |
!! | TTGATTTGGAGATAGGTAAT+AGG | + | chr1_3:63578881-63578900 | Msa0132500:intron | 30.0% |
CAATCATTTGGAAAAAGTGA+GGG | - | chr1_3:63579428-63579447 | None:intergenic | 30.0% | |
TCAATCATTTGGAAAAAGTG+AGG | - | chr1_3:63579429-63579448 | None:intergenic | 30.0% | |
! | AGTATTGCAATTTGATTCGA+CGG | - | chr1_3:63579466-63579485 | None:intergenic | 30.0% |
TATAGAGTCAAGTTTCAGAA+CGG | - | chr1_3:63579536-63579555 | None:intergenic | 30.0% | |
!! | TCAGAAAGTGTTGTTCAAAT+CGG | - | chr1_3:63579587-63579606 | None:intergenic | 30.0% |
AATACAATCGGCTAGATTTA+TGG | + | chr1_3:63579635-63579654 | Msa0132500:intron | 30.0% | |
TGATTTGATTCAACAGAAGA+AGG | + | chr1_3:63579853-63579872 | Msa0132500:CDS | 30.0% | |
AGGAATTGAATCAATCGTTT+AGG | + | chr1_3:63579873-63579892 | Msa0132500:CDS | 30.0% | |
AGAACAAAATCATAGCATGA+CGG | + | chr1_3:63579931-63579950 | Msa0132500:CDS | 30.0% | |
CTTGACCTTGATACTTGAAT+TGG | + | chr1_3:63571690-63571709 | Msa0132500:five_prime_UTR | 35.0% | |
GATACTTGAATTGGGTTATG+AGG | + | chr1_3:63571699-63571718 | Msa0132500:five_prime_UTR | 35.0% | |
TTGGGTTATGAGGTTATAGT+TGG | + | chr1_3:63571709-63571728 | Msa0132500:five_prime_UTR | 35.0% | |
CTTTGTGTTTCAATGACTGT+TGG | + | chr1_3:63571771-63571790 | Msa0132500:five_prime_UTR | 35.0% | |
! | GTTTTCAGAATCAGATTCCA+AGG | + | chr1_3:63571830-63571849 | Msa0132500:five_prime_UTR | 35.0% |
GAACAAAACACAAAGTTCCT+TGG | - | chr1_3:63571850-63571869 | None:intergenic | 35.0% | |
!! | TTTGTTCTTTCTGAGGTTGT+TGG | + | chr1_3:63571863-63571882 | Msa0132500:five_prime_UTR | 35.0% |
!! | TGATTGTGATGGGTTGTAAT+GGG | + | chr1_3:63572008-63572027 | Msa0132500:exon | 35.0% |
GATAAGTTAGTTAGTGTGAG+AGG | + | chr1_3:63572091-63572110 | Msa0132500:CDS | 35.0% | |
AAGAAGTAACTTCCGATGAT+TGG | - | chr1_3:63572177-63572196 | None:intergenic | 35.0% | |
ACACTAACACTAACATGTGT+TGG | - | chr1_3:63572255-63572274 | None:intergenic | 35.0% | |
! | TGTTTGTGTCGTTGTTTCAT+AGG | + | chr1_3:63572284-63572303 | Msa0132500:intron | 35.0% |
! | GTAGTCAACATATAGCTCTA+TGG | + | chr1_3:63572428-63572447 | Msa0132500:intron | 35.0% |
! | TATAGCTCTATGGAATCTTG+TGG | + | chr1_3:63572438-63572457 | Msa0132500:intron | 35.0% |
!! | CTAAGTCTCTGGCTTTAAAT+GGG | - | chr1_3:63572668-63572687 | None:intergenic | 35.0% |
! | GGTTTAATGGTGTTTGACTT+GGG | - | chr1_3:63572753-63572772 | None:intergenic | 35.0% |
TGGTTTAATGGTGTTTGACT+TGG | - | chr1_3:63572754-63572773 | None:intergenic | 35.0% | |
ACCATTAAACCAACCCAAAT+GGG | + | chr1_3:63572762-63572781 | Msa0132500:intron | 35.0% | |
AAATTGTAACCCATTTGGGT+TGG | - | chr1_3:63572774-63572793 | None:intergenic | 35.0% | |
GCACAAATTGTAACCCATTT+GGG | - | chr1_3:63572778-63572797 | None:intergenic | 35.0% | |
AGCACAAATTGTAACCCATT+TGG | - | chr1_3:63572779-63572798 | None:intergenic | 35.0% | |
ATGCTTTATCATTGCTTTGC+TGG | + | chr1_3:63572827-63572846 | Msa0132500:intron | 35.0% | |
TGCTTTATCATTGCTTTGCT+GGG | + | chr1_3:63572828-63572847 | Msa0132500:intron | 35.0% | |
!! | AAGAAAAGGCATTTCACAGA+AGG | - | chr1_3:63572867-63572886 | None:intergenic | 35.0% |
! | CGAACAAACCGTTATTGTTT+TGG | + | chr1_3:63573052-63573071 | Msa0132500:intron | 35.0% |
! | TTTTCAATTGACAATACCGG+GGG | + | chr1_3:63573163-63573182 | Msa0132500:intron | 35.0% |
TCTCATCTTCAGCTATTAGT+GGG | - | chr1_3:63573356-63573375 | None:intergenic | 35.0% | |
ATCTCATCTTCAGCTATTAG+TGG | - | chr1_3:63573357-63573376 | None:intergenic | 35.0% | |
AGATCAATGACAGAAAAGAG+AGG | + | chr1_3:63573387-63573406 | Msa0132500:CDS | 35.0% | |
GATCAATGACAGAAAAGAGA+GGG | + | chr1_3:63573388-63573407 | Msa0132500:CDS | 35.0% | |
TATGCAAGTTTCACTGTATG+TGG | + | chr1_3:63573462-63573481 | Msa0132500:intron | 35.0% | |
!! | GTTCCAATCTTTTGAAGAGT+CGG | + | chr1_3:63573743-63573762 | Msa0132500:CDS | 35.0% |
AGTATGACAATTTGTAACCG+TGG | - | chr1_3:63573813-63573832 | None:intergenic | 35.0% | |
CAAATTGTCATACTTGTGGT+TGG | + | chr1_3:63573819-63573838 | Msa0132500:CDS | 35.0% | |
CTGAAACCCGTGTTAATTTA+AGG | - | chr1_3:63574041-63574060 | None:intergenic | 35.0% | |
! | CTTTTCCTTATTGAGCTGAT+TGG | + | chr1_3:63574193-63574212 | Msa0132500:intron | 35.0% |
ATACTCCTGCAAGTAAACAT+TGG | - | chr1_3:63574366-63574385 | None:intergenic | 35.0% | |
AATGTTTACTTGCAGGAGTA+TGG | + | chr1_3:63574365-63574384 | Msa0132500:intron | 35.0% | |
TGGTGTAAATTTCTATCCTC+TGG | + | chr1_3:63574442-63574461 | Msa0132500:CDS | 35.0% | |
GGTGTAAATTTCTATCCTCT+GGG | + | chr1_3:63574443-63574462 | Msa0132500:CDS | 35.0% | |
CGATATAAAGCAGCTAAAAG+AGG | - | chr1_3:63574587-63574606 | None:intergenic | 35.0% | |
TAGAATGCAGTGTTATACCA+TGG | + | chr1_3:63574647-63574666 | Msa0132500:intron | 35.0% | |
!! | TCTCTTGGAGTTTTCTGAAA+AGG | + | chr1_3:63574689-63574708 | Msa0132500:intron | 35.0% |
TAATCTTCAATGCAAGGATC+AGG | - | chr1_3:63575200-63575219 | None:intergenic | 35.0% | |
GTTGGATAGAAAATGGGATA+TGG | - | chr1_3:63575296-63575315 | None:intergenic | 35.0% | |
TTCTAATCACTCACCATATG+CGG | - | chr1_3:63575531-63575550 | None:intergenic | 35.0% | |
TTTGATCAAGTAAGATGGGA+TGG | - | chr1_3:63575582-63575601 | None:intergenic | 35.0% | |
! | TTTTGCCATCTAAAAAGGCT+TGG | - | chr1_3:63575677-63575696 | None:intergenic | 35.0% |
ACAAATTAAACTCACGTCCA+TGG | - | chr1_3:63575980-63575999 | None:intergenic | 35.0% | |
!!! | TTTTTTACCATCCCCTTTCT+CGG | + | chr1_3:63576159-63576178 | Msa0132500:intron | 35.0% |
!!! | TTTTAAAAGGCACCGAGAAA+GGG | - | chr1_3:63576174-63576193 | None:intergenic | 35.0% |
!!! | TTTTTAAAAGGCACCGAGAA+AGG | - | chr1_3:63576175-63576194 | None:intergenic | 35.0% |
!! | TTTCTCAAAGTGCTGGTTAT+TGG | + | chr1_3:63576267-63576286 | Msa0132500:CDS | 35.0% |
!! | TTCTCAAAGTGCTGGTTATT+GGG | + | chr1_3:63576268-63576287 | Msa0132500:CDS | 35.0% |
!! | TAATTTCTGGCCTTCCTTAT+TGG | + | chr1_3:63576345-63576364 | Msa0132500:intron | 35.0% |
TGCAAATGGCAAGGAAATAT+TGG | - | chr1_3:63576381-63576400 | None:intergenic | 35.0% | |
GCAGCTGTCTTATATAATTG+TGG | + | chr1_3:63576398-63576417 | Msa0132500:intron | 35.0% | |
TACATGCTGAAGTATGCAAT+AGG | - | chr1_3:63576492-63576511 | None:intergenic | 35.0% | |
ATTTACCAACTGCCTATATG+TGG | + | chr1_3:63576529-63576548 | Msa0132500:CDS | 35.0% | |
AAGCACCATAAGGTTATTTG+TGG | + | chr1_3:63576863-63576882 | Msa0132500:intron | 35.0% | |
CTTAGAAGAATTGGTCCTTA+AGG | + | chr1_3:63576953-63576972 | Msa0132500:intron | 35.0% | |
! | TTGTTGGTTACTGTTTCTTG+AGG | + | chr1_3:63577022-63577041 | Msa0132500:CDS | 35.0% |
ATGAGTCAAACTATCAACCA+CGG | + | chr1_3:63577046-63577065 | Msa0132500:CDS | 35.0% | |
!! | ATATTTTGGATTTGGGAGCA+TGG | + | chr1_3:63577110-63577129 | Msa0132500:CDS | 35.0% |
GACAAATATGATACCTCAGT+TGG | + | chr1_3:63577363-63577382 | Msa0132500:intron | 35.0% | |
AAAATACACTATGCCAACTG+AGG | - | chr1_3:63577379-63577398 | None:intergenic | 35.0% | |
!!! | TTTTTTGCCCACTACATGTT+TGG | + | chr1_3:63577395-63577414 | Msa0132500:intron | 35.0% |
!! | GTTTTCATGTTCTAGACAAG+GGG | - | chr1_3:63577498-63577517 | None:intergenic | 35.0% |
!!! | GCTGTTTTTATAAGCTATCC+TGG | + | chr1_3:63577743-63577762 | Msa0132500:intron | 35.0% |
!! | CTTATTTTCATAAGCTCTCC+AGG | - | chr1_3:63577764-63577783 | None:intergenic | 35.0% |
! | ATCTTTTAGTAATGTGGCAG+CGG | + | chr1_3:63577998-63578017 | Msa0132500:intron | 35.0% |
! | TGTTGTATCAGGAGCTTTAT+GGG | - | chr1_3:63578265-63578284 | None:intergenic | 35.0% |
TTGTTGTATCAGGAGCTTTA+TGG | - | chr1_3:63578266-63578285 | None:intergenic | 35.0% | |
!!! | GAGCTATTTTGTTTGGTGTT+AGG | - | chr1_3:63578420-63578439 | None:intergenic | 35.0% |
!! | GTCTTCTGAGCTATTTTGTT+TGG | - | chr1_3:63578427-63578446 | None:intergenic | 35.0% |
AACAAAATAGCTCAGAAGAC+TGG | + | chr1_3:63578427-63578446 | Msa0132500:intron | 35.0% | |
ACAAAATAGCTCAGAAGACT+GGG | + | chr1_3:63578428-63578447 | Msa0132500:intron | 35.0% | |
TTAGCAAGTTCCCTCTAATA+GGG | - | chr1_3:63578508-63578527 | None:intergenic | 35.0% | |
ACCTTACTTAGGGTAAAGTT+TGG | + | chr1_3:63578538-63578557 | Msa0132500:intron | 35.0% | |
TCCAAACTTTACCCTAAGTA+AGG | - | chr1_3:63578542-63578561 | None:intergenic | 35.0% | |
CATACACATGAGTTACTGTT+AGG | - | chr1_3:63578668-63578687 | None:intergenic | 35.0% | |
TGAAACAACATAATCACGTC+TGG | + | chr1_3:63578783-63578802 | Msa0132500:intron | 35.0% | |
ATGTAGATCCTGTACATGTT+AGG | + | chr1_3:63578855-63578874 | Msa0132500:intron | 35.0% | |
ATCAAGATCCTAACATGTAC+AGG | - | chr1_3:63578866-63578885 | None:intergenic | 35.0% | |
!! | TAGGATCTTGATTTGGAGAT+AGG | + | chr1_3:63578874-63578893 | Msa0132500:intron | 35.0% |
TGCAAGAGTTGCATTAAATC+TGG | - | chr1_3:63579107-63579126 | None:intergenic | 35.0% | |
GAGGAATTGTCAACAATGTT+AGG | - | chr1_3:63579182-63579201 | None:intergenic | 35.0% | |
!! | TTATTGAGGTGGTTTGCTAA+AGG | - | chr1_3:63579234-63579253 | None:intergenic | 35.0% |
AAGGAACTGGATCAATCATT+TGG | - | chr1_3:63579440-63579459 | None:intergenic | 35.0% | |
! | ATCTAGCCGATTGTATTGAT+TGG | - | chr1_3:63579632-63579651 | None:intergenic | 35.0% |
! | ATCTAGCTGATTGTATTGGT+TGG | + | chr1_3:63579680-63579699 | Msa0132500:intron | 35.0% |
!! | TCAGAAAGCGTTGTTCAAAT+CGG | + | chr1_3:63579725-63579744 | Msa0132500:CDS | 35.0% |
TACAGAGTTGAGTTTGAGAA+CGG | + | chr1_3:63579776-63579795 | Msa0132500:CDS | 35.0% | |
TATTCGTAGAATACTCATCG+AGG | + | chr1_3:63579826-63579845 | Msa0132500:CDS | 35.0% | |
TCAATCGTTTAGGAAGAATG+AGG | + | chr1_3:63579883-63579902 | Msa0132500:CDS | 35.0% | |
CAATCGTTTAGGAAGAATGA+GGG | + | chr1_3:63579884-63579903 | Msa0132500:CDS | 35.0% | |
!! | GTGATTGTGATGGGTTGTAA+TGG | + | chr1_3:63572007-63572026 | Msa0132500:exon | 40.0% |
TGACGATTCACCTTCATCTA+AGG | + | chr1_3:63572141-63572160 | Msa0132500:CDS | 40.0% | |
ATTCACCTTCATCTAAGGAG+AGG | + | chr1_3:63572146-63572165 | Msa0132500:CDS | 40.0% | |
TTCACCTTCATCTAAGGAGA+GGG | + | chr1_3:63572147-63572166 | Msa0132500:CDS | 40.0% | |
GTTACTTCTTTGCCACACAA+AGG | + | chr1_3:63572187-63572206 | Msa0132500:CDS | 40.0% | |
AATGAGCACAAACCTTTGTG+TGG | - | chr1_3:63572202-63572221 | None:intergenic | 40.0% | |
GTTAGTGTTAGTGTCGTATC+CGG | + | chr1_3:63572261-63572280 | Msa0132500:intron | 40.0% | |
TGAAACAACGACACAAACAC+CGG | - | chr1_3:63572283-63572302 | None:intergenic | 40.0% | |
! | AAATTAGTCGGTCTTTTGCC+TGG | - | chr1_3:63572613-63572632 | None:intergenic | 40.0% |
GCAAAAGACCGACTAATTTG+AGG | + | chr1_3:63572614-63572633 | Msa0132500:intron | 40.0% | |
ATTGGACGCCTCAAATTAGT+CGG | - | chr1_3:63572625-63572644 | None:intergenic | 40.0% | |
!! | GCTAAGTCTCTGGCTTTAAA+TGG | - | chr1_3:63572669-63572688 | None:intergenic | 40.0% |
CACCATTAAACCAACCCAAA+TGG | + | chr1_3:63572761-63572780 | Msa0132500:intron | 40.0% | |
!! | ACCCATTTGGGTTGGTTTAA+TGG | - | chr1_3:63572766-63572785 | None:intergenic | 40.0% |
ATAATTAGGTGCATGGGTGT+TGG | + | chr1_3:63573001-63573020 | Msa0132500:intron | 40.0% | |
AAATAGTGGCTATAGCGTAG+TGG | + | chr1_3:63573025-63573044 | Msa0132500:intron | 40.0% | |
TCAAATTCCACTACGCTACA+GGG | - | chr1_3:63573132-63573151 | None:intergenic | 40.0% | |
TTCAAATTCCACTACGCTAC+AGG | - | chr1_3:63573133-63573152 | None:intergenic | 40.0% | |
!! | CAAAAGCATTCAACCAAGGA+AGG | - | chr1_3:63573202-63573221 | None:intergenic | 40.0% |
! | CTTCCTTGGTTGAATGCTTT+TGG | + | chr1_3:63573200-63573219 | Msa0132500:intron | 40.0% |
!! | AGACCAAAAGCATTCAACCA+AGG | - | chr1_3:63573206-63573225 | None:intergenic | 40.0% |
GGTTAGAAACAATAGTCCAC+AGG | - | chr1_3:63573233-63573252 | None:intergenic | 40.0% | |
! | TCGAAGGCATGACCTAATAT+TGG | + | chr1_3:63573413-63573432 | Msa0132500:CDS | 40.0% |
CTGACAGTCTGTCCAATATT+AGG | - | chr1_3:63573428-63573447 | None:intergenic | 40.0% | |
AATATTGGACAGACTGTCAG+AGG | + | chr1_3:63573428-63573447 | Msa0132500:CDS | 40.0% | |
CAAGTTTCACTGTATGTGGA+TGG | + | chr1_3:63573466-63573485 | Msa0132500:intron | 40.0% | |
GTGGATGGCCTAAAATTTCA+AGG | + | chr1_3:63573481-63573500 | Msa0132500:intron | 40.0% | |
! | GGTTAGCAATCAGTTTTTGC+TGG | - | chr1_3:63573647-63573666 | None:intergenic | 40.0% |
!! | CTACCGACTCTTCAAAAGAT+TGG | - | chr1_3:63573749-63573768 | None:intergenic | 40.0% |
ATACTTGTGGTTGGAACTAG+AGG | + | chr1_3:63573828-63573847 | Msa0132500:CDS | 40.0% | |
GCTCAATAAGGAAAAGCCTA+GGG | - | chr1_3:63574189-63574208 | None:intergenic | 40.0% | |
AGCTCAATAAGGAAAAGCCT+AGG | - | chr1_3:63574190-63574209 | None:intergenic | 40.0% | |
AATCGCCAATCAGCTCAATA+AGG | - | chr1_3:63574201-63574220 | None:intergenic | 40.0% | |
AAGACATTTGTAAGGTCAGC+TGG | + | chr1_3:63574422-63574441 | Msa0132500:CDS | 40.0% | |
GTAAATTTCTATCCTCTGGG+TGG | + | chr1_3:63574446-63574465 | Msa0132500:CDS | 40.0% | |
GTAAGTCCATATGCAGTTCT+AGG | - | chr1_3:63574866-63574885 | None:intergenic | 40.0% | |
TCTTCACCCTACACTACAAT+TGG | - | chr1_3:63574989-63575008 | None:intergenic | 40.0% | |
AACAACAACCAAAGCTTAGG+TGG | + | chr1_3:63575080-63575099 | Msa0132500:intron | 40.0% | |
AATAAAGGTCTGATTCCGTC+TGG | + | chr1_3:63575377-63575396 | Msa0132500:CDS | 40.0% | |
TAACCAAAGAAAGCAGCTGA+AGG | + | chr1_3:63575415-63575434 | Msa0132500:CDS | 40.0% | |
ATAATAGCCTGAGCTGTGAA+GGG | - | chr1_3:63575497-63575516 | None:intergenic | 40.0% | |
AATAATAGCCTGAGCTGTGA+AGG | - | chr1_3:63575498-63575517 | None:intergenic | 40.0% | |
TCTAATCACTCACCATATGC+GGG | - | chr1_3:63575530-63575549 | None:intergenic | 40.0% | |
CCATGAATGTTGTGTTTACG+AGG | - | chr1_3:63575705-63575724 | None:intergenic | 40.0% | |
CCTCGTAAACACAACATTCA+TGG | + | chr1_3:63575702-63575721 | Msa0132500:intron | 40.0% | |
AAATTATGTGCTAGGAGCCT+TGG | - | chr1_3:63575872-63575891 | None:intergenic | 40.0% | |
ACATCTTCTTCACAATGCCA+TGG | + | chr1_3:63575960-63575979 | Msa0132500:CDS | 40.0% | |
!! | TTTAAAAGGCACCGAGAAAG+GGG | - | chr1_3:63576173-63576192 | None:intergenic | 40.0% |
AACAGGTTTGCCAATAAGGA+AGG | - | chr1_3:63576358-63576377 | None:intergenic | 40.0% | |
TTGGAACAGGTTTGCCAATA+AGG | - | chr1_3:63576362-63576381 | None:intergenic | 40.0% | |
TGGCAAGGAAATATTGGAAC+AGG | - | chr1_3:63576375-63576394 | None:intergenic | 40.0% | |
TTGTGGATCTACTGATATGG+TGG | + | chr1_3:63576415-63576434 | Msa0132500:CDS | 40.0% | |
TGTGGATCTACTGATATGGT+GGG | + | chr1_3:63576416-63576435 | Msa0132500:CDS | 40.0% | |
AAGATGAGGACTCCACATAT+AGG | - | chr1_3:63576544-63576563 | None:intergenic | 40.0% | |
TTGTCCATACCACTTGGTTT+CGG | - | chr1_3:63576570-63576589 | None:intergenic | 40.0% | |
! | GGCTCTTTAGTTGATGTTGT+TGG | + | chr1_3:63577006-63577025 | Msa0132500:CDS | 40.0% |
TGAGTCAAACTATCAACCAC+GGG | + | chr1_3:63577047-63577066 | Msa0132500:CDS | 40.0% | |
!!! | GCGGTCCTTTTTTAATCCAT+TGG | - | chr1_3:63577083-63577102 | None:intergenic | 40.0% |
AATAAGCTGTAGCCAGCTTA+TGG | + | chr1_3:63577778-63577797 | Msa0132500:intron | 40.0% | |
CTTATGACATGTCCATAAGC+TGG | - | chr1_3:63577793-63577812 | None:intergenic | 40.0% | |
!! | AATTGGTCTTGCTCTGTGAT+TGG | + | chr1_3:63578031-63578050 | Msa0132500:intron | 40.0% |
TTGTATTTGGGTGATTGTCG+TGG | + | chr1_3:63578091-63578110 | Msa0132500:intron | 40.0% | |
TCCTGATACAACAACCACAT+AGG | + | chr1_3:63578272-63578291 | Msa0132500:intron | 40.0% | |
CCTGATACAACAACCACATA+GGG | + | chr1_3:63578273-63578292 | Msa0132500:intron | 40.0% | |
! | AGTGTTTTCTCTTCTCGCTA+GGG | - | chr1_3:63578341-63578360 | None:intergenic | 40.0% |
! | TAGTGTTTTCTCTTCTCGCT+AGG | - | chr1_3:63578342-63578361 | None:intergenic | 40.0% |
TTAACTAACGGTAGTTTGGG+TGG | - | chr1_3:63578456-63578475 | None:intergenic | 40.0% | |
! | AGATGAAGCATCCCTATTAG+AGG | + | chr1_3:63578494-63578513 | Msa0132500:intron | 40.0% |
! | GATGAAGCATCCCTATTAGA+GGG | + | chr1_3:63578495-63578514 | Msa0132500:intron | 40.0% |
CTTAGCAAGTTCCCTCTAAT+AGG | - | chr1_3:63578509-63578528 | None:intergenic | 40.0% | |
GAGGAGATGATAACCTCAAA+GGG | - | chr1_3:63578578-63578597 | None:intergenic | 40.0% | |
AGAGGAGATGATAACCTCAA+AGG | - | chr1_3:63578579-63578598 | None:intergenic | 40.0% | |
ATACTTGAGCAACTGTCAAG+AGG | - | chr1_3:63578597-63578616 | None:intergenic | 40.0% | |
TTGCTGAGGAAAATTTGGAC+TGG | - | chr1_3:63578829-63578848 | None:intergenic | 40.0% | |
GGAGATAGGTAATAGGAAGA+AGG | + | chr1_3:63578888-63578907 | Msa0132500:intron | 40.0% | |
TAGGAAGAAGGATGTTGATC+TGG | + | chr1_3:63578900-63578919 | Msa0132500:intron | 40.0% | |
ACAATTCCTCTACCATGCAT+GGG | + | chr1_3:63579192-63579211 | Msa0132500:intron | 40.0% | |
! | CAATTTGATTCGACGGAAGA+AGG | - | chr1_3:63579459-63579478 | None:intergenic | 40.0% |
!! | GTTTCAGAACGGTGTTTTTG+AGG | - | chr1_3:63579525-63579544 | None:intergenic | 40.0% |
!! | GTTTGAGAACGGTGTTTTTG+AGG | + | chr1_3:63579787-63579806 | Msa0132500:CDS | 40.0% |
ACAAAATCATAGCATGACGG+CGG | + | chr1_3:63579934-63579953 | Msa0132500:CDS | 40.0% | |
CAATGACTGTTGGGTAGTAG+TGG | + | chr1_3:63571781-63571800 | Msa0132500:five_prime_UTR | 45.0% | |
TCACCTTCATCTAAGGAGAG+GGG | + | chr1_3:63572148-63572167 | Msa0132500:CDS | 45.0% | |
!! | ATTTCAGTGGGCTAAGTCTC+TGG | - | chr1_3:63572679-63572698 | None:intergenic | 45.0% |
GAGACTTAGCCCACTGAAAT+TGG | + | chr1_3:63572679-63572698 | Msa0132500:intron | 45.0% | |
TGCATGCTTACATCCTTCCT+TGG | + | chr1_3:63573186-63573205 | Msa0132500:intron | 45.0% | |
!!! | TGCTTTTGGTCTTGTTCCTG+TGG | + | chr1_3:63573214-63573233 | Msa0132500:intron | 45.0% |
CATTGCATCACAGCTCCTAT+TGG | + | chr1_3:63573318-63573337 | Msa0132500:CDS | 45.0% | |
GGGTTTCTCTCAGTTCCAAT+AGG | - | chr1_3:63573336-63573355 | None:intergenic | 45.0% | |
! | AGGCGATGTACAACCTTTTG+TGG | + | chr1_3:63573848-63573867 | Msa0132500:CDS | 45.0% |
! | TTTGTAAGTTGGGGATCCCT+AGG | + | chr1_3:63574170-63574189 | Msa0132500:intron | 45.0% |
TTACATCCTGCCAATACTCG+AGG | - | chr1_3:63574476-63574495 | None:intergenic | 45.0% | |
!! | GAGTATTGGCAGGATGTAAG+AGG | + | chr1_3:63574477-63574496 | Msa0132500:intron | 45.0% |
TAAAGCAGCTAAAAGAGGGC+TGG | - | chr1_3:63574582-63574601 | None:intergenic | 45.0% | |
AACCAAAGCTTAGGTGGAGT+TGG | + | chr1_3:63575086-63575105 | Msa0132500:intron | 45.0% | |
AACCAACTCCACCTAAGCTT+TGG | - | chr1_3:63575091-63575110 | None:intergenic | 45.0% | |
GATATTTCAGTCGGTCCAGA+CGG | - | chr1_3:63575395-63575414 | None:intergenic | 45.0% | |
! | TGACCTTCAGCTGCTTTCTT+TGG | - | chr1_3:63575421-63575440 | None:intergenic | 45.0% |
!! | ACAGCACCTGATTTGGAAAC+CGG | + | chr1_3:63575467-63575486 | Msa0132500:CDS | 45.0% |
TGCCATCTAAAAAGGCTTGG+CGG | - | chr1_3:63575674-63575693 | None:intergenic | 45.0% | |
!! | TATTTTTGATTCCGGCCTGC+AGG | + | chr1_3:63575899-63575918 | Msa0132500:intron | 45.0% |
!! | ATTTTTGATTCCGGCCTGCA+GGG | + | chr1_3:63575900-63575919 | Msa0132500:intron | 45.0% |
TACATCTTGCTGAAGCCCTT+GGG | + | chr1_3:63575927-63575946 | Msa0132500:CDS | 45.0% | |
ATATGCATTTCCCCACCCTT+TGG | + | chr1_3:63576238-63576257 | Msa0132500:CDS | 45.0% | |
TTTGAGAAACACGCGCCAAA+GGG | - | chr1_3:63576256-63576275 | None:intergenic | 45.0% | |
TAAGACAGCTGCAAATGGCA+AGG | - | chr1_3:63576390-63576409 | None:intergenic | 45.0% | |
GTGGATCTACTGATATGGTG+GGG | + | chr1_3:63576417-63576436 | Msa0132500:CDS | 45.0% | |
GCATACTTCAGCATGTATCG+TGG | + | chr1_3:63576495-63576514 | Msa0132500:CDS | 45.0% | |
CTTGGTTTCGGAACAAGATG+AGG | - | chr1_3:63576558-63576577 | None:intergenic | 45.0% | |
CATCTTGTTCCGAAACCAAG+TGG | + | chr1_3:63576558-63576577 | Msa0132500:CDS | 45.0% | |
TGTTCCGAAACCAAGTGGTA+TGG | + | chr1_3:63576563-63576582 | Msa0132500:intron | 45.0% | |
GAAACCAAGTGGTATGGACA+AGG | + | chr1_3:63576569-63576588 | Msa0132500:intron | 45.0% | |
! | GGACCGCCTCCTTTATATTT+TGG | + | chr1_3:63577096-63577115 | Msa0132500:CDS | 45.0% |
CATAAGTAACGACCAACTCC+TGG | - | chr1_3:63577330-63577349 | None:intergenic | 45.0% | |
! | TTTTAGTAATGTGGCAGCGG+AGG | + | chr1_3:63578001-63578020 | Msa0132500:intron | 45.0% |
TGGGTGATTGTCGTGGATTT+CGG | + | chr1_3:63578098-63578117 | Msa0132500:intron | 45.0% | |
CCCTATGTGGTTGTTGTATC+AGG | - | chr1_3:63578276-63578295 | None:intergenic | 45.0% | |
AGACTTGTATGCTCCCTTTG+AGG | + | chr1_3:63578562-63578581 | Msa0132500:intron | 45.0% | |
GACAATTCCTCTACCATGCA+TGG | + | chr1_3:63579191-63579210 | Msa0132500:intron | 45.0% | |
!! | GAACGGTGTTTTTGAGGAGT+TGG | - | chr1_3:63579793-63579812 | None:intergenic | 45.0% |
!! | GAACGGTGTTTTTGAGGAGT+TGG | + | chr1_3:63579793-63579812 | Msa0132500:CDS | 45.0% |
!!! | GAAAAAATTATTTTTTTAAA+AGG | - | chr1_3:63576187-63576206 | None:intergenic | 5.0% |
!!! | TAGTTTTTTTTTATTTTTAA+TGG | + | chr1_3:63578185-63578204 | Msa0132500:intron | 5.0% |
CTTCCCCTCTCCTTAGATGA+AGG | - | chr1_3:63572154-63572173 | None:intergenic | 50.0% | |
CCAATCACACCTTCCACTTG+CGG | + | chr1_3:63572640-63572659 | Msa0132500:intron | 50.0% | |
CAATCACACCTTCCACTTGC+GGG | + | chr1_3:63572641-63572660 | Msa0132500:intron | 50.0% | |
AATCACACCTTCCACTTGCG+GGG | + | chr1_3:63572642-63572661 | Msa0132500:intron | 50.0% | |
! | ACCCTGGTGCCAATTTCAGT+GGG | - | chr1_3:63572691-63572710 | None:intergenic | 50.0% |
! | TACCCTGGTGCCAATTTCAG+TGG | - | chr1_3:63572692-63572711 | None:intergenic | 50.0% |
GGTCTCAGGTTTGATTACCC+TGG | - | chr1_3:63572707-63572726 | None:intergenic | 50.0% | |
CAAACCTGAGACCTTGAGAG+CGG | + | chr1_3:63572714-63572733 | Msa0132500:intron | 50.0% | |
!! | TGGTGTTTGACTTGGGACCT+TGG | - | chr1_3:63572746-63572765 | None:intergenic | 50.0% |
!! | GCATGGGTGTTGGCAAATAG+TGG | + | chr1_3:63573011-63573030 | Msa0132500:intron | 50.0% |
CAGAAAAGAGAGGGCTTCGA+AGG | + | chr1_3:63573397-63573416 | Msa0132500:CDS | 50.0% | |
CAGACTGTCAGAGGATGAGA+AGG | + | chr1_3:63573437-63573456 | Msa0132500:CDS | 50.0% | |
TTTGAAGAGTCGGTAGCGAG+CGG | + | chr1_3:63573753-63573772 | Msa0132500:CDS | 50.0% | |
CTCTTCGCAATGGCCACAAA+AGG | - | chr1_3:63573864-63573883 | None:intergenic | 50.0% | |
TGCCTGAAGTCTCTTCGCAA+TGG | - | chr1_3:63573874-63573893 | None:intergenic | 50.0% | |
! | AGGAGTATGGTCATCGCGTT+AGG | + | chr1_3:63574378-63574397 | Msa0132500:intron | 50.0% |
TGCCAGCCTAGAACTGCATA+TGG | + | chr1_3:63574857-63574876 | Msa0132500:intron | 50.0% | |
!! | GTCCATATGCAGTTCTAGGC+TGG | - | chr1_3:63574862-63574881 | None:intergenic | 50.0% |
! | TTCCAAATCAGGTGCTGTGC+AGG | - | chr1_3:63575465-63575484 | None:intergenic | 50.0% |
!! | GGAATGCCGGTTTCCAAATC+AGG | - | chr1_3:63575476-63575495 | None:intergenic | 50.0% |
ATTGCAAACCCTCCCGCATA+TGG | + | chr1_3:63575515-63575534 | Msa0132500:CDS | 50.0% | |
ATCACTCACCATATGCGGGA+GGG | - | chr1_3:63575526-63575545 | None:intergenic | 50.0% | |
AATCACTCACCATATGCGGG+AGG | - | chr1_3:63575527-63575546 | None:intergenic | 50.0% | |
GTACATCTTGCTGAAGCCCT+TGG | + | chr1_3:63575926-63575945 | Msa0132500:CDS | 50.0% | |
ACATCTTGCTGAAGCCCTTG+GGG | + | chr1_3:63575928-63575947 | Msa0132500:CDS | 50.0% | |
GATGTGAATAGGCACCCCAA+GGG | - | chr1_3:63575945-63575964 | None:intergenic | 50.0% | |
AGATGTGAATAGGCACCCCA+AGG | - | chr1_3:63575946-63575965 | None:intergenic | 50.0% | |
GGGTGGGGAAATGCATATGT+TGG | - | chr1_3:63576236-63576255 | None:intergenic | 50.0% | |
! | CTTTGAGAAACACGCGCCAA+AGG | - | chr1_3:63576257-63576276 | None:intergenic | 50.0% |
GGACTCCACATATAGGCAGT+TGG | - | chr1_3:63576537-63576556 | None:intergenic | 50.0% | |
GCATCCTTGTCCATACCACT+TGG | - | chr1_3:63576576-63576595 | None:intergenic | 50.0% | |
GTCAAACTATCAACCACGGG+AGG | + | chr1_3:63577050-63577069 | Msa0132500:CDS | 50.0% | |
CATTGGAGAAAATCCTCCCG+TGG | - | chr1_3:63577066-63577085 | None:intergenic | 50.0% | |
! | CACGGGAGGATTTTCTCCAA+TGG | + | chr1_3:63577064-63577083 | Msa0132500:CDS | 50.0% |
GCAGCGGAGGAACATCTAAT+TGG | + | chr1_3:63578014-63578033 | Msa0132500:intron | 50.0% | |
! | TTGTGTGTTGGTGCCCTATG+TGG | - | chr1_3:63578289-63578308 | None:intergenic | 50.0% |
ATGGATCCCATGCATGGTAG+AGG | - | chr1_3:63579201-63579220 | None:intergenic | 50.0% | |
TCTACCATGCATGGGATCCA+TGG | + | chr1_3:63579200-63579219 | Msa0132500:intron | 50.0% | |
GATTCGACGGAAGAAGGAAC+TGG | - | chr1_3:63579453-63579472 | None:intergenic | 50.0% | |
AAATCATAGCATGACGGCGG+CGG | + | chr1_3:63579937-63579956 | Msa0132500:CDS | 50.0% | |
GGAGAGGGGAAGCCAATCAT+CGG | + | chr1_3:63572162-63572181 | Msa0132500:CDS | 55.0% | |
! | CCGCAAGTGGAAGGTGTGAT+TGG | - | chr1_3:63572643-63572662 | None:intergenic | 55.0% |
CTTTAAATGGGCCCCGCAAG+TGG | - | chr1_3:63572656-63572675 | None:intergenic | 55.0% | |
AGCCCACTGAAATTGGCACC+AGG | + | chr1_3:63572686-63572705 | Msa0132500:intron | 55.0% | |
GCCCACTGAAATTGGCACCA+GGG | + | chr1_3:63572687-63572706 | Msa0132500:intron | 55.0% | |
! | CTTGGATTGTGCCGCTCTCA+AGG | - | chr1_3:63572728-63572747 | None:intergenic | 55.0% |
CTTGAGAGCGGCACAATCCA+AGG | + | chr1_3:63572726-63572745 | Msa0132500:intron | 55.0% | |
AGTGTAGCCCTGTAGCGTAG+TGG | + | chr1_3:63573122-63573141 | Msa0132500:intron | 55.0% | |
AGGATGTAAGCATGCACCCC+CGG | - | chr1_3:63573182-63573201 | None:intergenic | 55.0% | |
GGCCATTGCGAAGAGACTTC+AGG | + | chr1_3:63573869-63573888 | Msa0132500:CDS | 55.0% | |
GGGTGGTGATCCTCGAGTAT+TGG | + | chr1_3:63574463-63574482 | Msa0132500:CDS | 55.0% | |
!! | GGTGATCCTCGAGTATTGGC+AGG | + | chr1_3:63574467-63574486 | Msa0132500:CDS | 55.0% |
! | AAATCAGGTGCTGTGCAGGC+TGG | - | chr1_3:63575461-63575480 | None:intergenic | 55.0% |
AGCCTGCACAGCACCTGATT+TGG | + | chr1_3:63575460-63575479 | Msa0132500:CDS | 55.0% | |
CTGAGCTGTGAAGGGAATGC+CGG | - | chr1_3:63575489-63575508 | None:intergenic | 55.0% | |
! | CGCCGCCAAGCCTTTTTAGA+TGG | + | chr1_3:63575669-63575688 | Msa0132500:intron | 55.0% |
GCAAGATGTACATGCCCTGC+AGG | - | chr1_3:63575917-63575936 | None:intergenic | 55.0% | |
!! | AAAGGCACCGAGAAAGGGGA+TGG | - | chr1_3:63576169-63576188 | None:intergenic | 55.0% |
AGAAACACGCGCCAAAGGGT+GGG | - | chr1_3:63576252-63576271 | None:intergenic | 55.0% | |
GCGCGTGTTTCTCAAAGTGC+TGG | + | chr1_3:63576260-63576279 | Msa0132500:CDS | 55.0% | |
! | CTGATATGGTGGGGAATGCG+AGG | + | chr1_3:63576426-63576445 | Msa0132500:CDS | 55.0% |
! | ATGGTGGGATTTCGCATGCC+AGG | + | chr1_3:63577309-63577328 | Msa0132500:intron | 55.0% |
GGATTTCGCATGCCAGGAGT+TGG | + | chr1_3:63577315-63577334 | Msa0132500:intron | 55.0% | |
CTTGCCATGGATCCCATGCA+TGG | - | chr1_3:63579207-63579226 | None:intergenic | 55.0% | |
TGCTAAAGGCCAGCTTGCCA+TGG | - | chr1_3:63579220-63579239 | None:intergenic | 55.0% | |
AAATGGGCCCCGCAAGTGGA+AGG | - | chr1_3:63572652-63572671 | None:intergenic | 60.0% | |
! | TGTGCCGCTCTCAAGGTCTC+AGG | - | chr1_3:63572721-63572740 | None:intergenic | 60.0% |
ACTCGAGGATCACCACCCAG+AGG | - | chr1_3:63574461-63574480 | None:intergenic | 60.0% | |
CGGCATTCCCTTCACAGCTC+AGG | + | chr1_3:63575487-63575506 | Msa0132500:CDS | 60.0% | |
GATGTACATGCCCTGCAGGC+CGG | - | chr1_3:63575913-63575932 | None:intergenic | 60.0% | |
GAAACACGCGCCAAAGGGTG+GGG | - | chr1_3:63576251-63576270 | None:intergenic | 60.0% | |
GAGAAACACGCGCCAAAGGG+TGG | - | chr1_3:63576253-63576272 | None:intergenic | 60.0% | |
GCATGGGATCCATGGCAAGC+TGG | + | chr1_3:63579208-63579227 | Msa0132500:intron | 60.0% | |
TCATAGCATGACGGCGGCGG+CGG | + | chr1_3:63579940-63579959 | Msa0132500:CDS | 65.0% | |
TAGCATGACGGCGGCGGCGG+CGG | + | chr1_3:63579943-63579962 | Msa0132500:CDS | 75.0% | |
! | TGACGGCGGCGGCGGCGGTT+TGG | + | chr1_3:63579948-63579967 | Msa0132500:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 63571690 | 63579973 | 63571690 | ID=Msa0132500;Name=Msa0132500 |
chr1_3 | mRNA | 63571690 | 63579973 | 63571690 | ID=Msa0132500-mRNA-1;Parent=Msa0132500;Name=Msa0132500-mRNA-1;_AED=0.05;_eAED=0.10;_QI=326|0.88|0.8|1|0.88|0.9|10|0|528 |
chr1_3 | exon | 63571690 | 63572208 | 63571690 | ID=Msa0132500-mRNA-1:exon:21263;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63573310 | 63573458 | 63573310 | ID=Msa0132500-mRNA-1:exon:21264;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63573648 | 63573890 | 63573648 | ID=Msa0132500-mRNA-1:exon:21265;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63574380 | 63574491 | 63574380 | ID=Msa0132500-mRNA-1:exon:21266;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63575366 | 63575536 | 63575366 | ID=Msa0132500-mRNA-1:exon:21267;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63575921 | 63575984 | 63575921 | ID=Msa0132500-mRNA-1:exon:21268;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63576232 | 63576289 | 63576232 | ID=Msa0132500-mRNA-1:exon:21269;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63576402 | 63576579 | 63576402 | ID=Msa0132500-mRNA-1:exon:21270;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63577001 | 63577131 | 63577001 | ID=Msa0132500-mRNA-1:exon:21271;Parent=Msa0132500-mRNA-1 |
chr1_3 | exon | 63579686 | 63579973 | 63579686 | ID=Msa0132500-mRNA-1:exon:21272;Parent=Msa0132500-mRNA-1 |
chr1_3 | five_prime_UTR | 63571690 | 63572015 | 63571690 | ID=Msa0132500-mRNA-1:five_prime_utr;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63572016 | 63572208 | 63572016 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63573310 | 63573458 | 63573310 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63573648 | 63573890 | 63573648 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63574380 | 63574491 | 63574380 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63575366 | 63575536 | 63575366 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63575921 | 63575984 | 63575921 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63576232 | 63576289 | 63576232 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63576402 | 63576579 | 63576402 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63577001 | 63577131 | 63577001 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
chr1_3 | CDS | 63579686 | 63579973 | 63579686 | ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1 |
Gene Sequence |
Protein sequence |