AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132500 MtrunA17_Chr1g0201761 97.229 433 10 1 1 433 1 431 0.0 869
Msa0132500 MtrunA17_Chr4g0010281 52.273 396 171 5 51 435 55 443 1.96e-140 419
Msa0132500 MtrunA17_Chr4g0010291 51.554 386 169 5 61 435 63 441 3.11e-136 408
Msa0132500 MtrunA17_Chr7g0248971 54.321 324 142 2 113 433 92 412 7.83e-119 362
Msa0132500 MtrunA17_Chr0c19g0493791 55.224 201 86 2 113 311 92 290 9.61e-69 223
Msa0132500 MtrunA17_Chr0c19g0493781 53.600 125 52 2 312 433 3 124 2.51e-38 143
Msa0132500 MtrunA17_Chr2g0320741 72.222 72 16 1 435 502 54 125 2.07e-23 105
Msa0132500 MtrunA17_Chr2g0320731 70.833 72 16 2 435 502 38 108 6.52e-22 100
Msa0132500 MtrunA17_Chr7g0224201 48.000 50 26 0 389 438 27 76 4.46e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132500 AT1G43620.7 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.1 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.3 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.5 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.2 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.6 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.4 64.286 434 138 7 1 433 1 418 0.0 553
Msa0132500 AT1G43620.8 80.417 240 47 0 194 433 7 246 8.45e-144 421
Msa0132500 AT3G07020.2 50.500 400 197 1 37 435 58 457 2.63e-138 414
Msa0132500 AT3G07020.1 50.500 400 197 1 37 435 58 457 3.06e-138 414
Msa0132500 AT3G07020.3 57.751 329 139 0 107 435 47 375 3.37e-138 411

Find 138 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACCGCCTCCTTTATATTT+TGG 0.131145 1_3:+63577096 Msa0132500:CDS
CTTGACCTTGATACTTGAAT+TGG 0.245771 1_3:+63571690 Msa0132500:five_prime_UTR
TTTCTCAAAGTGCTGGTTAT+TGG 0.284056 1_3:+63576267 Msa0132500:CDS
TGACCTTCAGCTGCTTTCTT+TGG 0.293929 1_3:-63575418 None:intergenic
TTCTCAAAGTGCTGGTTATT+GGG 0.310436 1_3:+63576268 Msa0132500:CDS
AGCCTGCACAGCACCTGATT+TGG 0.315404 1_3:+63575460 Msa0132500:CDS
TGGTGTAAATTTCTATCCTC+TGG 0.330664 1_3:+63574442 Msa0132500:CDS
CTGACAGTCTGTCCAATATT+AGG 0.347761 1_3:-63573425 None:intergenic
GGCTCTTTAGTTGATGTTGT+TGG 0.348548 1_3:+63577006 Msa0132500:CDS
TACATCTTGCTGAAGCCCTT+GGG 0.364963 1_3:+63575927 Msa0132500:CDS
AGGAATTGAATCAATCGTTT+AGG 0.369650 1_3:+63579873 Msa0132500:CDS
CTCCCAAATCCAAAATATAA+AGG 0.373017 1_3:-63577105 None:intergenic
TCGAAGGCATGACCTAATAT+TGG 0.373430 1_3:+63573413 Msa0132500:CDS
CATTGCATCACAGCTCCTAT+TGG 0.379859 1_3:+63573318 Msa0132500:CDS
TTATAGTTGGAAATTCAAAA+AGG 0.383463 1_3:+63571722 Msa0132500:five_prime_UTR
GGAATGCCGGTTTCCAAATC+AGG 0.384516 1_3:-63575473 None:intergenic
GATACTTGAATTGGGTTATG+AGG 0.386739 1_3:+63571699 Msa0132500:five_prime_UTR
TTGGGTTATGAGGTTATAGT+TGG 0.390425 1_3:+63571709 Msa0132500:five_prime_UTR
TGACGATTCACCTTCATCTA+AGG 0.393461 1_3:+63572141 Msa0132500:CDS
TTGTCCATACCACTTGGTTT+CGG 0.398350 1_3:-63576567 None:intergenic
AGAAGTAGTTGAAGATGAAA+AGG 0.401885 1_3:+63572048 Msa0132500:CDS
AAGAAGTAACTTCCGATGAT+TGG 0.403909 1_3:-63572174 None:intergenic
ATAGATATGGCAAGGAATAA+AGG 0.406136 1_3:+63575362 Msa0132500:intron
TTTGTTCTTTCTGAGGTTGT+TGG 0.414603 1_3:+63571863 Msa0132500:five_prime_UTR
TAGCATGACGGCGGCGGCGG+CGG 0.417607 1_3:+63579943 Msa0132500:CDS
GGCCATTGCGAAGAGACTTC+AGG 0.423276 1_3:+63573869 Msa0132500:CDS
AATGTTTACTTGCAGGAGTA+TGG 0.427510 1_3:+63574365 Msa0132500:intron
ATAAATCTAGCTGATTGTAT+TGG 0.432104 1_3:+63579676 Msa0132500:intron
TCAGAAAGCGTTGTTCAAAT+CGG 0.434898 1_3:+63579725 Msa0132500:CDS
CTACCGACTCTTCAAAAGAT+TGG 0.435951 1_3:-63573746 None:intergenic
ATTGCAAACCCTCCCGCATA+TGG 0.441124 1_3:+63575515 Msa0132500:CDS
GTACATCTTGCTGAAGCCCT+TGG 0.442502 1_3:+63575926 Msa0132500:CDS
TTGACCTTGATACTTGAATT+GGG 0.443305 1_3:+63571691 Msa0132500:five_prime_UTR
ATCTCATCTTCAGCTATTAG+TGG 0.443955 1_3:-63573354 None:intergenic
ATATGCATTTCCCCACCCTT+TGG 0.444072 1_3:+63576238 Msa0132500:CDS
GGGTTTCTCTCAGTTCCAAT+AGG 0.445007 1_3:-63573333 None:intergenic
AAGACATTTGTAAGGTCAGC+TGG 0.446615 1_3:+63574422 Msa0132500:CDS
TGATTGTGATGGGTTGTAAT+GGG 0.449292 1_3:+63572008 Msa0132500:exon
TGATTTGATTCAACAGAAGA+AGG 0.449504 1_3:+63579853 Msa0132500:CDS
TCATAGCATGACGGCGGCGG+CGG 0.449724 1_3:+63579940 Msa0132500:CDS
CTTTGTGTTTCAATGACTGT+TGG 0.451980 1_3:+63571771 Msa0132500:five_prime_UTR
GAACAAAACACAAAGTTCCT+TGG 0.452755 1_3:-63571847 None:intergenic
TAATTGTGGATCTACTGATA+TGG 0.454178 1_3:+63576412 Msa0132500:CDS
GCGCGTGTTTCTCAAAGTGC+TGG 0.467890 1_3:+63576260 Msa0132500:CDS
TTCCAAATCAGGTGCTGTGC+AGG 0.469128 1_3:-63575462 None:intergenic
ACAGCACCTGATTTGGAAAC+CGG 0.472297 1_3:+63575467 Msa0132500:CDS
ATCTAGCTGATTGTATTGGT+TGG 0.472952 1_3:+63579680 Msa0132500:intron
CTTCCCCTCTCCTTAGATGA+AGG 0.474030 1_3:-63572151 None:intergenic
CTAATTTCAAGACATTTGTA+AGG 0.475925 1_3:+63574414 Msa0132500:CDS
GTGATTGTGATGGGTTGTAA+TGG 0.478088 1_3:+63572007 Msa0132500:exon
CAAATTGTCATACTTGTGGT+TGG 0.479952 1_3:+63573819 Msa0132500:CDS
TTTGTGTTTCAATGACTGTT+GGG 0.487621 1_3:+63571772 Msa0132500:five_prime_UTR
CGGCATTCCCTTCACAGCTC+AGG 0.488148 1_3:+63575487 Msa0132500:CDS
AAATCAGGTGCTGTGCAGGC+TGG 0.495055 1_3:-63575458 None:intergenic
AGGAGTATGGTCATCGCGTT+AGG 0.502334 1_3:+63574378 Msa0132500:intron
CAATGACTGTTGGGTAGTAG+TGG 0.507124 1_3:+63571781 Msa0132500:five_prime_UTR
CTCTTCGCAATGGCCACAAA+AGG 0.507208 1_3:-63573861 None:intergenic
AATAAAGGTCTGATTCCGTC+TGG 0.507240 1_3:+63575377 Msa0132500:CDS
GCAGCTGTCTTATATAATTG+TGG 0.509774 1_3:+63576398 Msa0132500:intron
ATAACCCAATTCAAGTATCA+AGG 0.515858 1_3:-63571695 None:intergenic
CTGATTATTGTGATTGTGAT+GGG 0.520454 1_3:+63571998 Msa0132500:exon
AAGATGAGGACTCCACATAT+AGG 0.521439 1_3:-63576541 None:intergenic
GAAGTAGTTGAAGATGAAAA+GGG 0.523347 1_3:+63572049 Msa0132500:CDS
GAAACACGCGCCAAAGGGTG+GGG 0.525242 1_3:-63576248 None:intergenic
TTTAAATAATAGATATGGCA+AGG 0.525373 1_3:+63575354 Msa0132500:intron
TTTGAGAAACACGCGCCAAA+GGG 0.526660 1_3:-63576253 None:intergenic
GGTGTAAATTTCTATCCTCT+GGG 0.527341 1_3:+63574443 Msa0132500:CDS
AAATCATAGCATGACGGCGG+CGG 0.529982 1_3:+63579937 Msa0132500:CDS
TCTCATCTTCAGCTATTAGT+GGG 0.530855 1_3:-63573353 None:intergenic
ATTGAAACACAAAGAACGTT+CGG 0.531146 1_3:-63571762 None:intergenic
AATAATAGCCTGAGCTGTGA+AGG 0.532487 1_3:-63575495 None:intergenic
ATTTACCAACTGCCTATATG+TGG 0.534491 1_3:+63576529 Msa0132500:CDS
TTCTAATCACTCACCATATG+CGG 0.534904 1_3:-63575528 None:intergenic
GGGTGGTGATCCTCGAGTAT+TGG 0.539944 1_3:+63574463 Msa0132500:CDS
TACATGCTGAAGTATGCAAT+AGG 0.541098 1_3:-63576489 None:intergenic
GTTACAAATTGTCATACTTG+TGG 0.543374 1_3:+63573815 Msa0132500:CDS
CAGAAAAGAGAGGGCTTCGA+AGG 0.543506 1_3:+63573397 Msa0132500:CDS
ACAAATTAAACTCACGTCCA+TGG 0.545172 1_3:-63575977 None:intergenic
ATTGTGAAGAAGATGTGAAT+AGG 0.545573 1_3:-63575953 None:intergenic
TTCACCTTCATCTAAGGAGA+GGG 0.547895 1_3:+63572147 Msa0132500:CDS
AGAAACACGCGCCAAAGGGT+GGG 0.550349 1_3:-63576249 None:intergenic
CTTTGAGAAACACGCGCCAA+AGG 0.550897 1_3:-63576254 None:intergenic
ACTGATTATTGTGATTGTGA+TGG 0.554723 1_3:+63571997 Msa0132500:exon
GAGAAACACGCGCCAAAGGG+TGG 0.555092 1_3:-63576250 None:intergenic
ATACTTGTGGTTGGAACTAG+AGG 0.557305 1_3:+63573828 Msa0132500:CDS
TACAGAGTTGAGTTTGAGAA+CGG 0.560553 1_3:+63579776 Msa0132500:CDS
GGTGATCCTCGAGTATTGGC+AGG 0.560631 1_3:+63574467 Msa0132500:CDS
CTGAGCTGTGAAGGGAATGC+CGG 0.567875 1_3:-63575486 None:intergenic
TCTAATCACTCACCATATGC+GGG 0.570202 1_3:-63575527 None:intergenic
TTGTTGGTTACTGTTTCTTG+AGG 0.570659 1_3:+63577022 Msa0132500:CDS
CAGACTGTCAGAGGATGAGA+AGG 0.575642 1_3:+63573437 Msa0132500:CDS
ACATCTTCTTCACAATGCCA+TGG 0.575887 1_3:+63575960 Msa0132500:CDS
CTTGGTTTCGGAACAAGATG+AGG 0.576658 1_3:-63576555 None:intergenic
TCAATCGTTTAGGAAGAATG+AGG 0.577293 1_3:+63579883 Msa0132500:CDS
CTTTGGTTAGATATTTCAGT+CGG 0.578080 1_3:-63575401 None:intergenic
TTTGAAGAGTCGGTAGCGAG+CGG 0.585117 1_3:+63573753 Msa0132500:CDS
ATTCAAATAAATCAGTTCCA+CGG 0.594368 1_3:+63573793 Msa0132500:CDS
GGAGAGGGGAAGCCAATCAT+CGG 0.595295 1_3:+63572162 Msa0132500:CDS
CTGATATGGTGGGGAATGCG+AGG 0.599449 1_3:+63576426 Msa0132500:CDS
GATATTTCAGTCGGTCCAGA+CGG 0.599453 1_3:-63575392 None:intergenic
CAATCGTTTAGGAAGAATGA+GGG 0.599670 1_3:+63579884 Msa0132500:CDS
ACATCTTGCTGAAGCCCTTG+GGG 0.602070 1_3:+63575928 Msa0132500:CDS
TGCCTGAAGTCTCTTCGCAA+TGG 0.604421 1_3:-63573871 None:intergenic
TAACCAAAGAAAGCAGCTGA+AGG 0.605409 1_3:+63575415 Msa0132500:CDS
TTGTGGATCTACTGATATGG+TGG 0.606875 1_3:+63576415 Msa0132500:CDS
CAATTCAAGTATCAAGGTCA+AGG 0.607566 1_3:-63571689 None:intergenic
AATCCAAAATATAAAGGAGG+CGG 0.607992 1_3:-63577099 None:intergenic
GGGTGGGGAAATGCATATGT+TGG 0.608825 1_3:-63576233 None:intergenic
GATCAATGACAGAAAAGAGA+GGG 0.613379 1_3:+63573388 Msa0132500:CDS
ATAATAGCCTGAGCTGTGAA+GGG 0.613818 1_3:-63575494 None:intergenic
AATATTGGACAGACTGTCAG+AGG 0.625882 1_3:+63573428 Msa0132500:CDS
AGATGTGAATAGGCACCCCA+AGG 0.626183 1_3:-63575943 None:intergenic
GTTACTTCTTTGCCACACAA+AGG 0.626419 1_3:+63572187 Msa0132500:CDS
TGTGGATCTACTGATATGGT+GGG 0.628477 1_3:+63576416 Msa0132500:CDS
ATCACTCACCATATGCGGGA+GGG 0.634649 1_3:-63575523 None:intergenic
GGACTCCACATATAGGCAGT+TGG 0.634912 1_3:-63576534 None:intergenic
GATAAGTTAGTTAGTGTGAG+AGG 0.638386 1_3:+63572091 Msa0132500:CDS
TGAGTCAAACTATCAACCAC+GGG 0.640938 1_3:+63577047 Msa0132500:CDS
GCATACTTCAGCATGTATCG+TGG 0.647313 1_3:+63576495 Msa0132500:CDS
AATCACTCACCATATGCGGG+AGG 0.647697 1_3:-63575524 None:intergenic
GTAAATTTCTATCCTCTGGG+TGG 0.653398 1_3:+63574446 Msa0132500:CDS
ATTCACCTTCATCTAAGGAG+AGG 0.655648 1_3:+63572146 Msa0132500:CDS
AGTATGACAATTTGTAACCG+TGG 0.656264 1_3:-63573810 None:intergenic
CATCTTGTTCCGAAACCAAG+TGG 0.657325 1_3:+63576558 Msa0132500:CDS
AGATCAATGACAGAAAAGAG+AGG 0.660701 1_3:+63573387 Msa0132500:CDS
TTACATCCTGCCAATACTCG+AGG 0.661630 1_3:-63574473 None:intergenic
GATGTGAATAGGCACCCCAA+GGG 0.663373 1_3:-63575942 None:intergenic
AATGAGCACAAACCTTTGTG+TGG 0.663563 1_3:-63572199 None:intergenic
CCAAATCCAAAATATAAAGG+AGG 0.663826 1_3:-63577102 None:intergenic
CATTGGAGAAAATCCTCCCG+TGG 0.667741 1_3:-63577063 None:intergenic
ATGAGTCAAACTATCAACCA+CGG 0.669416 1_3:+63577046 Msa0132500:CDS
TCACCTTCATCTAAGGAGAG+GGG 0.681355 1_3:+63572148 Msa0132500:CDS
AGAACAAAATCATAGCATGA+CGG 0.684000 1_3:+63579931 Msa0132500:CDS
GTCAAACTATCAACCACGGG+AGG 0.710066 1_3:+63577050 Msa0132500:CDS
ACAAAATCATAGCATGACGG+CGG 0.727827 1_3:+63579934 Msa0132500:CDS
TATTCGTAGAATACTCATCG+AGG 0.734578 1_3:+63579826 Msa0132500:CDS
ACTCGAGGATCACCACCCAG+AGG 0.762040 1_3:-63574458 None:intergenic
GTGGATCTACTGATATGGTG+GGG 0.771351 1_3:+63576417 Msa0132500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAATAAATTATTAAA+AGG - chr1_3:63574505-63574524 None:intergenic 0.0%
!! TTAATAATTAATTTATATTT+CGG + chr1_3:63574525-63574544 Msa0132500:intron 0.0%
!! AGTTATTTAAATAATAGATA+TGG + chr1_3:63575349-63575368 Msa0132500:intron 10.0%
!!! TTTAATTATATTTTTGATTC+CGG + chr1_3:63575891-63575910 Msa0132500:intron 10.0%
!!! TACATTTTTTAAAAATTTAC+AGG + chr1_3:63576210-63576229 Msa0132500:intron 10.0%
!!! ATATTTTTATGAATAATTTC+TGG + chr1_3:63576332-63576351 Msa0132500:intron 10.0%
!! AAAAATTTACAGAAAAAAAA+AGG - chr1_3:63577199-63577218 None:intergenic 10.0%
!! AAAACAACAAAAATATAAAA+GGG + chr1_3:63578307-63578326 Msa0132500:intron 10.0%
!!! ATTTTTTGTTTTTGAAAACT+TGG + chr1_3:63572584-63572603 Msa0132500:intron 15.0%
!!! TATACTTTAAGAAAAAGAAA+AGG - chr1_3:63572881-63572900 None:intergenic 15.0%
!!! ATACATTTTGTTATATTCAA+TGG + chr1_3:63573972-63573991 Msa0132500:intron 15.0%
!!! TGTTTATGAATTTTACATTT+TGG + chr1_3:63574289-63574308 Msa0132500:intron 15.0%
!! TAATATTACTTAATTTCTCT+TGG + chr1_3:63574674-63574693 Msa0132500:intron 15.0%
!!! TTATTTGGAAGTTTTTATAA+GGG - chr1_3:63575062-63575081 None:intergenic 15.0%
!! ACATACTTAAAAACAAAAAT+AGG - chr1_3:63575239-63575258 None:intergenic 15.0%
!! TATATACAAAAAATTACACA+TGG + chr1_3:63575620-63575639 Msa0132500:intron 15.0%
!! ATATACAAAAAATTACACAT+GGG + chr1_3:63575621-63575640 Msa0132500:intron 15.0%
!! ATAATTAAAAATTATGTGCT+AGG - chr1_3:63575880-63575899 None:intergenic 15.0%
!! TAAAGATATAAAATCAATCA+TGG + chr1_3:63576909-63576928 Msa0132500:intron 15.0%
!! AAAGATATAAAATCAATCAT+GGG + chr1_3:63576910-63576929 Msa0132500:intron 15.0%
!! CAAAACAACAAAAATATAAA+AGG + chr1_3:63578306-63578325 Msa0132500:intron 15.0%
!! AAACAACAAAAATATAAAAG+GGG + chr1_3:63578308-63578327 Msa0132500:intron 15.0%
!! ATAAACTACAAATTAACTAA+CGG - chr1_3:63578468-63578487 None:intergenic 15.0%
!! ATGAATCTTTCATTATATTA+TGG + chr1_3:63578930-63578949 Msa0132500:intron 15.0%
!! TGAATCTTTCATTATATTAT+GGG + chr1_3:63578931-63578950 Msa0132500:intron 15.0%
!!! AAACTTTTGAGTTATAAAAT+CGG + chr1_3:63579749-63579768 Msa0132500:CDS 15.0%
!! TTATAGTTGGAAATTCAAAA+AGG + chr1_3:63571722-63571741 Msa0132500:five_prime_UTR 20.0%
!! CTATGCTATTATATACAATA+AGG - chr1_3:63572360-63572379 None:intergenic 20.0%
!! TAGATATGTCATAAGTATAT+AGG + chr1_3:63572523-63572542 Msa0132500:intron 20.0%
!! TCTTAAAGTATATTATACTC+TGG + chr1_3:63572889-63572908 Msa0132500:intron 20.0%
!! ACAAAAACTTCAACAAAATT+GGG - chr1_3:63572951-63572970 None:intergenic 20.0%
!! TTTGTCAACATAAATAGATT+TGG + chr1_3:63572966-63572985 Msa0132500:intron 20.0%
!! GGTTCTTTGTAAAAATAATT+AGG + chr1_3:63572987-63573006 Msa0132500:intron 20.0%
!!! GATATGTTATTTAGTACAAA+GGG + chr1_3:63573075-63573094 Msa0132500:intron 20.0%
!! AGAAATCAATCTCTTAATAA+AGG - chr1_3:63573258-63573277 None:intergenic 20.0%
!!! AGAGATTGATTTCTTATAAT+TGG + chr1_3:63573264-63573283 Msa0132500:intron 20.0%
!! TTCTTAAATTCTGTTCATAA+AGG + chr1_3:63573288-63573307 Msa0132500:intron 20.0%
!!! TTTTGTTCCTTAAATTAACA+CGG + chr1_3:63574031-63574050 Msa0132500:intron 20.0%
!!! ATAGCTTTATTTTTGTAAGT+TGG + chr1_3:63574159-63574178 Msa0132500:intron 20.0%
!!! TAGCTTTATTTTTGTAAGTT+GGG + chr1_3:63574160-63574179 Msa0132500:intron 20.0%
!!! TTTTGAACCAAATTATTTGA+AGG + chr1_3:63574240-63574259 Msa0132500:intron 20.0%
!! TTTGAACCAAATTATTTGAA+GGG + chr1_3:63574241-63574260 Msa0132500:intron 20.0%
!! TTAAGTAATATTAAACACCA+TGG - chr1_3:63574667-63574686 None:intergenic 20.0%
!! ATGATTAACACTTGAAAATT+TGG - chr1_3:63574801-63574820 None:intergenic 20.0%
!!! AATTTTCAAGTGTTAATCAT+AGG + chr1_3:63574801-63574820 Msa0132500:intron 20.0%
!!! TGTTGAAGTATCTATTTATA+CGG - chr1_3:63574832-63574851 None:intergenic 20.0%
!!! GTTATTTGGAAGTTTTTATA+AGG - chr1_3:63575063-63575082 None:intergenic 20.0%
!! TTTAAGCATATATAATGAGT+TGG - chr1_3:63575314-63575333 None:intergenic 20.0%
!! TTTAAATAATAGATATGGCA+AGG + chr1_3:63575354-63575373 Msa0132500:intron 20.0%
!! TTTATTTGATCAAGTAAGAT+GGG - chr1_3:63575586-63575605 None:intergenic 20.0%
!!! TTTTATTTGATCAAGTAAGA+TGG - chr1_3:63575587-63575606 None:intergenic 20.0%
!! ATCAACTATAAAAGAACTAT+TGG - chr1_3:63575735-63575754 None:intergenic 20.0%
!!! TATAGTTGATTTTTCTTTCA+AGG + chr1_3:63575745-63575764 Msa0132500:intron 20.0%
!!! CGTTTGAAAAAGTATAATTA+AGG - chr1_3:63576623-63576642 None:intergenic 20.0%
!!! ATCATTCAAGTATTTGAAAT+AGG + chr1_3:63576655-63576674 Msa0132500:intron 20.0%
!!! TTGTGAGAATATAAAGTTTT+TGG + chr1_3:63576706-63576725 Msa0132500:intron 20.0%
!!! AATAACTTTGAAGATTAAAC+AGG - chr1_3:63576825-63576844 None:intergenic 20.0%
!!! AGAAAAAAAAAGGCATTAAT+AGG - chr1_3:63577189-63577208 None:intergenic 20.0%
!!! TTTCTGTAAATTTTTCTGTT+TGG + chr1_3:63577204-63577223 Msa0132500:intron 20.0%
!!! GATTCATTAGCTTAAATATA+GGG - chr1_3:63577289-63577308 None:intergenic 20.0%
!!! TGATTCATTAGCTTAAATAT+AGG - chr1_3:63577290-63577309 None:intergenic 20.0%
!! ATATTTAAGCTAATGAATCA+TGG + chr1_3:63577290-63577309 Msa0132500:intron 20.0%
!!! TTTTCACTTTTACATCTAAA+TGG + chr1_3:63577435-63577454 Msa0132500:intron 20.0%
!! ATAAATAGTACAAATGTACA+AGG - chr1_3:63577566-63577585 None:intergenic 20.0%
!! GCTGTTATCATAATATAAAT+AGG + chr1_3:63577596-63577615 Msa0132500:intron 20.0%
!! CAGAAGTAAACAAAAAATAA+AGG + chr1_3:63578392-63578411 Msa0132500:intron 20.0%
!! GAATCTTTCATTATATTATG+GGG + chr1_3:63578932-63578951 Msa0132500:intron 20.0%
!! TTTATATAATCTTGTGTTGT+TGG - chr1_3:63578963-63578982 None:intergenic 20.0%
!! ATCATTAATATACTCTTAAG+TGG - chr1_3:63578991-63579010 None:intergenic 20.0%
!!! ACTTAAGAGTATATTAATGA+TGG + chr1_3:63578990-63579009 Msa0132500:intron 20.0%
!!! TATTGATTCTTGTGTAAATT+TGG - chr1_3:63579272-63579291 None:intergenic 20.0%
!! AAAGTTGTGAGTTATAAAAT+CGG - chr1_3:63579563-63579582 None:intergenic 20.0%
! TTACCATATCCTATGAATTT+AGG + chr1_3:63572467-63572486 Msa0132500:intron 25.0%
! TTATTCCTTCCTAAATTCAT+AGG - chr1_3:63572479-63572498 None:intergenic 25.0%
! TAGGATCAATGTAAAGATTT+AGG + chr1_3:63572542-63572561 Msa0132500:intron 25.0%
! AGGATCAATGTAAAGATTTA+GGG + chr1_3:63572543-63572562 Msa0132500:intron 25.0%
! AAAGCAATGATAAAGCATAA+AGG - chr1_3:63572825-63572844 None:intergenic 25.0%
! GACAAAAACTTCAACAAAAT+TGG - chr1_3:63572952-63572971 None:intergenic 25.0%
! TGTAAAAATAATTAGGTGCA+TGG + chr1_3:63572994-63573013 Msa0132500:intron 25.0%
! GTAAAAATAATTAGGTGCAT+GGG + chr1_3:63572995-63573014 Msa0132500:intron 25.0%
! AACATATCCCAAAACAATAA+CGG - chr1_3:63573063-63573082 None:intergenic 25.0%
!! GGATATGTTATTTAGTACAA+AGG + chr1_3:63573074-63573093 Msa0132500:intron 25.0%
! GTATTGTCAATTGAAAATAG+TGG - chr1_3:63573160-63573179 None:intergenic 25.0%
!! CTATTTTCAATTGACAATAC+CGG + chr1_3:63573160-63573179 Msa0132500:intron 25.0%
!! TATTTTCAATTGACAATACC+GGG + chr1_3:63573161-63573180 Msa0132500:intron 25.0%
! AAATTCTGTTCATAAAGGTT+TGG + chr1_3:63573293-63573312 Msa0132500:intron 25.0%
! TAGTGAAGATACAAAAAGAT+GGG + chr1_3:63573667-63573686 Msa0132500:CDS 25.0%
! ATTCAAATAAATCAGTTCCA+CGG + chr1_3:63573793-63573812 Msa0132500:CDS 25.0%
! GTGTTAATTTAAGGAACAAA+AGG - chr1_3:63574032-63574051 None:intergenic 25.0%
! TTTGTTCCTTAAATTAACAC+GGG + chr1_3:63574032-63574051 Msa0132500:intron 25.0%
!!! AGCTTTATTTTTGTAAGTTG+GGG + chr1_3:63574161-63574180 Msa0132500:intron 25.0%
! TTAGTTCAAGTATGAAAGTA+TGG - chr1_3:63574341-63574360 None:intergenic 25.0%
! CTAATTTCAAGACATTTGTA+AGG + chr1_3:63574414-63574433 Msa0132500:CDS 25.0%
! AAGTTAAACAAAGTACAAGT+AGG - chr1_3:63574551-63574570 None:intergenic 25.0%
! ACCTGTTAAATTTAGTATTC+AGG + chr1_3:63574611-63574630 Msa0132500:intron 25.0%
! ACCTGAATACTAAATTTAAC+AGG - chr1_3:63574615-63574634 None:intergenic 25.0%
!! CATTTTATAGTAATAGCTTG+AGG - chr1_3:63574772-63574791 None:intergenic 25.0%
! TAAATAACCAATTGTAGTGT+AGG + chr1_3:63574979-63574998 Msa0132500:intron 25.0%
! AAATAACCAATTGTAGTGTA+GGG + chr1_3:63574980-63574999 Msa0132500:intron 25.0%
!! TAATGAGTTGGATAGAAAAT+GGG - chr1_3:63575302-63575321 None:intergenic 25.0%
!! ATAATGAGTTGGATAGAAAA+TGG - chr1_3:63575303-63575322 None:intergenic 25.0%
!!! ATTAGTTTTGCCATCTAAAA+AGG - chr1_3:63575682-63575701 None:intergenic 25.0%
! CTTTGCAATAAAAGAACAAT+TGG - chr1_3:63575779-63575798 None:intergenic 25.0%
! TGAAATATTGTTTCAGCAAA+AGG - chr1_3:63576299-63576318 None:intergenic 25.0%
! TACTACACTATATAGTTTAG+TGG - chr1_3:63576799-63576818 None:intergenic 25.0%
! GTTAAAAGTCATTATCCTTA+AGG - chr1_3:63576971-63576990 None:intergenic 25.0%
!!! TTTTAACTAATTTGCAGACT+GGG + chr1_3:63576984-63577003 Msa0132500:intron 25.0%
!!! TTTCTCCAATGGATTAAAAA+AGG + chr1_3:63577075-63577094 Msa0132500:CDS 25.0%
!!! CTCCTTTATATTTTGGATTT+GGG + chr1_3:63577103-63577122 Msa0132500:CDS 25.0%
! AACAAATACTGACACTATAA+TGG - chr1_3:63577248-63577267 None:intergenic 25.0%
! ATAAGTTGTTAAACCAAACA+GGG - chr1_3:63577622-63577641 None:intergenic 25.0%
! AATAAGTTGTTAAACCAAAC+AGG - chr1_3:63577623-63577642 None:intergenic 25.0%
! NNNNTTTGAGCTTATCTACT+GGG - chr1_3:63577858-63577877 None:intergenic 25.0%
! NNNNNTTTGAGCTTATCTAC+TGG - chr1_3:63577859-63577878 None:intergenic 25.0%
!! ATCTAGATCTTTTAGTAATG+TGG + chr1_3:63577992-63578011 Msa0132500:intron 25.0%
! TGGATATTGTTAAAGTTTGT+AGG + chr1_3:63578051-63578070 Msa0132500:intron 25.0%
!! AAAGTCACTTTATGTAGATT+AGG - chr1_3:63578128-63578147 None:intergenic 25.0%
! TATATGAAAATGAACCAGTA+TGG + chr1_3:63578217-63578236 Msa0132500:intron 25.0%
!!! ATTTTTGTTGTTTTGTGTGT+TGG - chr1_3:63578301-63578320 None:intergenic 25.0%
! AAATTAACTAACGGTAGTTT+GGG - chr1_3:63578459-63578478 None:intergenic 25.0%
!!! TTGAAAAGATTTTGAAAGGT+AGG - chr1_3:63578626-63578645 None:intergenic 25.0%
!!! AAAATTTGCTGAGGAAAATT+TGG - chr1_3:63578834-63578853 None:intergenic 25.0%
!!! ATCTACATAAAAATTTGCTG+AGG - chr1_3:63578843-63578862 None:intergenic 25.0%
! ATACTTGTAATTTATTGAGG+TGG - chr1_3:63579245-63579264 None:intergenic 25.0%
! CAGATACTTGTAATTTATTG+AGG - chr1_3:63579248-63579267 None:intergenic 25.0%
! TATCATCCAATCAATACAAT+CGG + chr1_3:63579623-63579642 Msa0132500:intron 25.0%
! CTAGATTTATGGATACAATT+TGG + chr1_3:63579646-63579665 Msa0132500:intron 25.0%
! AATACAATCAGCTAGATTTA+TGG - chr1_3:63579677-63579696 None:intergenic 25.0%
! ATAAATCTAGCTGATTGTAT+TGG + chr1_3:63579676-63579695 Msa0132500:intron 25.0%
TTGACCTTGATACTTGAATT+GGG + chr1_3:63571691-63571710 Msa0132500:five_prime_UTR 30.0%
ATAACCCAATTCAAGTATCA+AGG - chr1_3:63571698-63571717 None:intergenic 30.0%
ATTGAAACACAAAGAACGTT+CGG - chr1_3:63571765-63571784 None:intergenic 30.0%
TTTGTGTTTCAATGACTGTT+GGG + chr1_3:63571772-63571791 Msa0132500:five_prime_UTR 30.0%
!! TTTGTGTTTTGTTCTTTCTG+AGG + chr1_3:63571856-63571875 Msa0132500:five_prime_UTR 30.0%
ACTGATTATTGTGATTGTGA+TGG + chr1_3:63571997-63572016 Msa0132500:exon 30.0%
CTGATTATTGTGATTGTGAT+GGG + chr1_3:63571998-63572017 Msa0132500:exon 30.0%
AGAAGTAGTTGAAGATGAAA+AGG + chr1_3:63572048-63572067 Msa0132500:CDS 30.0%
GAAGTAGTTGAAGATGAAAA+GGG + chr1_3:63572049-63572068 Msa0132500:CDS 30.0%
TGAAAAGGGTCTAAGAAAAA+TGG + chr1_3:63572063-63572082 Msa0132500:CDS 30.0%
CTTCCTAAATTCATAGGATA+TGG - chr1_3:63572473-63572492 None:intergenic 30.0%
CATATCCTATGAATTTAGGA+AGG + chr1_3:63572471-63572490 Msa0132500:intron 30.0%
GGATCAATGTAAAGATTTAG+GGG + chr1_3:63572544-63572563 Msa0132500:intron 30.0%
GATCAATGTAAAGATTTAGG+GGG + chr1_3:63572545-63572564 Msa0132500:intron 30.0%
!! TTTTTGAAAACTTGGTATCC+AGG + chr1_3:63572592-63572611 Msa0132500:intron 30.0%
!!! TATACTCTGGATTGCTTTTT+AGG + chr1_3:63572902-63572921 Msa0132500:intron 30.0%
! TCAACAAAATTGGGCTTTTT+AGG - chr1_3:63572942-63572961 None:intergenic 30.0%
! GAACAAACCGTTATTGTTTT+GGG + chr1_3:63573053-63573072 Msa0132500:intron 30.0%
TTGTCAAATAGTGACTATTG+CGG + chr1_3:63573098-63573117 Msa0132500:intron 30.0%
! ATTTTCAATTGACAATACCG+GGG + chr1_3:63573162-63573181 Msa0132500:intron 30.0%
ATCAATCTCTTAATAAAGGC+AGG - chr1_3:63573254-63573273 None:intergenic 30.0%
! AAGCACAACCTTGAAATTTT+AGG - chr1_3:63573492-63573511 None:intergenic 30.0%
! CATCTTTTTGTATCTTCACT+AGG - chr1_3:63573668-63573687 None:intergenic 30.0%
CTAGTGAAGATACAAAAAGA+TGG + chr1_3:63573666-63573685 Msa0132500:CDS 30.0%
GTTACAAATTGTCATACTTG+TGG + chr1_3:63573815-63573834 Msa0132500:CDS 30.0%
ACTGAGCTTGTAAATTAAAC+TGG + chr1_3:63574089-63574108 Msa0132500:intron 30.0%
CTGAGCTTGTAAATTAAACT+GGG + chr1_3:63574090-63574109 Msa0132500:intron 30.0%
AAACTGGGTTTCTAAATTTC+AGG + chr1_3:63574105-63574124 Msa0132500:intron 30.0%
AACTGGGTTTCTAAATTTCA+GGG + chr1_3:63574106-63574125 Msa0132500:intron 30.0%
ATTTCAGGGAAGACATATTA+TGG + chr1_3:63574120-63574139 Msa0132500:intron 30.0%
TTGCTTCCCTTCAAATAATT+TGG - chr1_3:63574250-63574269 None:intergenic 30.0%
TAATACCAATGTTTACTTGC+AGG + chr1_3:63574358-63574377 Msa0132500:intron 30.0%
GATATAAAGCAGCTAAAAGA+GGG - chr1_3:63574586-63574605 None:intergenic 30.0%
!! CTCTTTTAGCTGCTTTATAT+CGG + chr1_3:63574585-63574604 Msa0132500:intron 30.0%
GACTTACGACAAATTTGAAT+TGG + chr1_3:63574879-63574898 Msa0132500:intron 30.0%
CGACAAATTTGAATTGGATA+TGG + chr1_3:63574885-63574904 Msa0132500:intron 30.0%
!!! AAGAGCTAATTGTTTTTGCT+TGG - chr1_3:63574930-63574949 None:intergenic 30.0%
! AAGCAAAAACAATTAGCTCT+TGG + chr1_3:63574929-63574948 Msa0132500:intron 30.0%
TAAGGGATCATTATGTTTAG+AGG - chr1_3:63575045-63575064 None:intergenic 30.0%
! AAGCTTTGGTTGTTGTTATT+TGG - chr1_3:63575077-63575096 None:intergenic 30.0%
AATAACAACAACCAAAGCTT+AGG + chr1_3:63575077-63575096 Msa0132500:intron 30.0%
TTAGCTTAATCTTCAATGCA+AGG - chr1_3:63575206-63575225 None:intergenic 30.0%
ATAGATATGGCAAGGAATAA+AGG + chr1_3:63575362-63575381 Msa0132500:intron 30.0%
CTTTGGTTAGATATTTCAGT+CGG - chr1_3:63575404-63575423 None:intergenic 30.0%
AAAAATTACACATGGGTGAA+AGG + chr1_3:63575628-63575647 Msa0132500:intron 30.0%
! TAATGTTTGCAAGTTTTCCA+AGG + chr1_3:63575852-63575871 Msa0132500:intron 30.0%
ATTGTGAAGAAGATGTGAAT+AGG - chr1_3:63575956-63575975 None:intergenic 30.0%
TTATATAAGACAGCTGCAAA+TGG - chr1_3:63576395-63576414 None:intergenic 30.0%
TAATTGTGGATCTACTGATA+TGG + chr1_3:63576412-63576431 Msa0132500:CDS 30.0%
! ATATTGTATGAAGCACCATA+AGG + chr1_3:63576853-63576872 Msa0132500:intron 30.0%
TATCACCACAAATAACCTTA+TGG - chr1_3:63576871-63576890 None:intergenic 30.0%
CAACTTAAGCTTAGAAGAAT+TGG + chr1_3:63576944-63576963 Msa0132500:intron 30.0%
!! CTTTTAACTAATTTGCAGAC+TGG + chr1_3:63576983-63577002 Msa0132500:intron 30.0%
! TTTAACTAATTTGCAGACTG+GGG + chr1_3:63576985-63577004 Msa0132500:intron 30.0%
AATCCAAAATATAAAGGAGG+CGG - chr1_3:63577102-63577121 None:intergenic 30.0%
CCAAATCCAAAATATAAAGG+AGG - chr1_3:63577105-63577124 None:intergenic 30.0%
!! CCTCCTTTATATTTTGGATT+TGG + chr1_3:63577102-63577121 Msa0132500:CDS 30.0%
CTCCCAAATCCAAAATATAA+AGG - chr1_3:63577108-63577127 None:intergenic 30.0%
AAATACTGACACTATAATGG+TGG - chr1_3:63577245-63577264 None:intergenic 30.0%
TTTAAGCTAATGAATCATGG+TGG + chr1_3:63577293-63577312 Msa0132500:intron 30.0%
TTAAGCTAATGAATCATGGT+GGG + chr1_3:63577294-63577313 Msa0132500:intron 30.0%
CATATTTGTCATGTCTCTAA+TGG - chr1_3:63577353-63577372 None:intergenic 30.0%
TTACAATCCAAACATGTAGT+GGG - chr1_3:63577405-63577424 None:intergenic 30.0%
ATTACAATCCAAACATGTAG+TGG - chr1_3:63577406-63577425 None:intergenic 30.0%
!! TGTTTTCATGTTCTAGACAA+GGG - chr1_3:63577499-63577518 None:intergenic 30.0%
!! ATGTTTTCATGTTCTAGACA+AGG - chr1_3:63577500-63577519 None:intergenic 30.0%
TAATATAAATAGGCCCTGTT+TGG + chr1_3:63577606-63577625 Msa0132500:intron 30.0%
ACAACTTATTAAGCGCTTAT+AGG + chr1_3:63577633-63577652 Msa0132500:intron 30.0%
!!! AAACACTTTTGAGACTGTTT+AGG - chr1_3:63577833-63577852 None:intergenic 30.0%
!! TCATTGCGATTTGTTGTATT+TGG + chr1_3:63578078-63578097 Msa0132500:intron 30.0%
!! CATTGCGATTTGTTGTATTT+GGG + chr1_3:63578079-63578098 Msa0132500:intron 30.0%
!!! TTTTTGGTGTTTTACCATAC+TGG - chr1_3:63578234-63578253 None:intergenic 30.0%
!!! TTTATGGGTGTTCGATTTTT+TGG - chr1_3:63578250-63578269 None:intergenic 30.0%
!! ATTTTTCTCAGGTGTTTTTG+TGG - chr1_3:63578372-63578391 None:intergenic 30.0%
! GTTTACTTCTGATTTTTCTC+AGG - chr1_3:63578383-63578402 None:intergenic 30.0%
CAAATTAACTAACGGTAGTT+TGG - chr1_3:63578460-63578479 None:intergenic 30.0%
AGATGAAGTTAACCTTACTT+AGG + chr1_3:63578527-63578546 Msa0132500:intron 30.0%
GATGAAGTTAACCTTACTTA+GGG + chr1_3:63578528-63578547 Msa0132500:intron 30.0%
! CCACTTGAAAAGATTTTGAA+AGG - chr1_3:63578630-63578649 None:intergenic 30.0%
!! CCTTTCAAAATCTTTTCAAG+TGG + chr1_3:63578627-63578646 Msa0132500:intron 30.0%
!!! TTCAAAATCTTTTCAAGTGG+AGG + chr1_3:63578630-63578649 Msa0132500:intron 30.0%
!!! TCAAAATCTTTTCAAGTGGA+GGG + chr1_3:63578631-63578650 Msa0132500:intron 30.0%
!! TAGTGAGTACTTGATAATGT+CGG + chr1_3:63578690-63578709 Msa0132500:intron 30.0%
TACATGTTAGGATCTTGATT+TGG + chr1_3:63578867-63578886 Msa0132500:intron 30.0%
!! TTGATTTGGAGATAGGTAAT+AGG + chr1_3:63578881-63578900 Msa0132500:intron 30.0%
CAATCATTTGGAAAAAGTGA+GGG - chr1_3:63579428-63579447 None:intergenic 30.0%
TCAATCATTTGGAAAAAGTG+AGG - chr1_3:63579429-63579448 None:intergenic 30.0%
! AGTATTGCAATTTGATTCGA+CGG - chr1_3:63579466-63579485 None:intergenic 30.0%
TATAGAGTCAAGTTTCAGAA+CGG - chr1_3:63579536-63579555 None:intergenic 30.0%
!! TCAGAAAGTGTTGTTCAAAT+CGG - chr1_3:63579587-63579606 None:intergenic 30.0%
AATACAATCGGCTAGATTTA+TGG + chr1_3:63579635-63579654 Msa0132500:intron 30.0%
TGATTTGATTCAACAGAAGA+AGG + chr1_3:63579853-63579872 Msa0132500:CDS 30.0%
AGGAATTGAATCAATCGTTT+AGG + chr1_3:63579873-63579892 Msa0132500:CDS 30.0%
AGAACAAAATCATAGCATGA+CGG + chr1_3:63579931-63579950 Msa0132500:CDS 30.0%
CTTGACCTTGATACTTGAAT+TGG + chr1_3:63571690-63571709 Msa0132500:five_prime_UTR 35.0%
GATACTTGAATTGGGTTATG+AGG + chr1_3:63571699-63571718 Msa0132500:five_prime_UTR 35.0%
TTGGGTTATGAGGTTATAGT+TGG + chr1_3:63571709-63571728 Msa0132500:five_prime_UTR 35.0%
CTTTGTGTTTCAATGACTGT+TGG + chr1_3:63571771-63571790 Msa0132500:five_prime_UTR 35.0%
! GTTTTCAGAATCAGATTCCA+AGG + chr1_3:63571830-63571849 Msa0132500:five_prime_UTR 35.0%
GAACAAAACACAAAGTTCCT+TGG - chr1_3:63571850-63571869 None:intergenic 35.0%
!! TTTGTTCTTTCTGAGGTTGT+TGG + chr1_3:63571863-63571882 Msa0132500:five_prime_UTR 35.0%
!! TGATTGTGATGGGTTGTAAT+GGG + chr1_3:63572008-63572027 Msa0132500:exon 35.0%
GATAAGTTAGTTAGTGTGAG+AGG + chr1_3:63572091-63572110 Msa0132500:CDS 35.0%
AAGAAGTAACTTCCGATGAT+TGG - chr1_3:63572177-63572196 None:intergenic 35.0%
ACACTAACACTAACATGTGT+TGG - chr1_3:63572255-63572274 None:intergenic 35.0%
! TGTTTGTGTCGTTGTTTCAT+AGG + chr1_3:63572284-63572303 Msa0132500:intron 35.0%
! GTAGTCAACATATAGCTCTA+TGG + chr1_3:63572428-63572447 Msa0132500:intron 35.0%
! TATAGCTCTATGGAATCTTG+TGG + chr1_3:63572438-63572457 Msa0132500:intron 35.0%
!! CTAAGTCTCTGGCTTTAAAT+GGG - chr1_3:63572668-63572687 None:intergenic 35.0%
! GGTTTAATGGTGTTTGACTT+GGG - chr1_3:63572753-63572772 None:intergenic 35.0%
TGGTTTAATGGTGTTTGACT+TGG - chr1_3:63572754-63572773 None:intergenic 35.0%
ACCATTAAACCAACCCAAAT+GGG + chr1_3:63572762-63572781 Msa0132500:intron 35.0%
AAATTGTAACCCATTTGGGT+TGG - chr1_3:63572774-63572793 None:intergenic 35.0%
GCACAAATTGTAACCCATTT+GGG - chr1_3:63572778-63572797 None:intergenic 35.0%
AGCACAAATTGTAACCCATT+TGG - chr1_3:63572779-63572798 None:intergenic 35.0%
ATGCTTTATCATTGCTTTGC+TGG + chr1_3:63572827-63572846 Msa0132500:intron 35.0%
TGCTTTATCATTGCTTTGCT+GGG + chr1_3:63572828-63572847 Msa0132500:intron 35.0%
!! AAGAAAAGGCATTTCACAGA+AGG - chr1_3:63572867-63572886 None:intergenic 35.0%
! CGAACAAACCGTTATTGTTT+TGG + chr1_3:63573052-63573071 Msa0132500:intron 35.0%
! TTTTCAATTGACAATACCGG+GGG + chr1_3:63573163-63573182 Msa0132500:intron 35.0%
TCTCATCTTCAGCTATTAGT+GGG - chr1_3:63573356-63573375 None:intergenic 35.0%
ATCTCATCTTCAGCTATTAG+TGG - chr1_3:63573357-63573376 None:intergenic 35.0%
AGATCAATGACAGAAAAGAG+AGG + chr1_3:63573387-63573406 Msa0132500:CDS 35.0%
GATCAATGACAGAAAAGAGA+GGG + chr1_3:63573388-63573407 Msa0132500:CDS 35.0%
TATGCAAGTTTCACTGTATG+TGG + chr1_3:63573462-63573481 Msa0132500:intron 35.0%
!! GTTCCAATCTTTTGAAGAGT+CGG + chr1_3:63573743-63573762 Msa0132500:CDS 35.0%
AGTATGACAATTTGTAACCG+TGG - chr1_3:63573813-63573832 None:intergenic 35.0%
CAAATTGTCATACTTGTGGT+TGG + chr1_3:63573819-63573838 Msa0132500:CDS 35.0%
CTGAAACCCGTGTTAATTTA+AGG - chr1_3:63574041-63574060 None:intergenic 35.0%
! CTTTTCCTTATTGAGCTGAT+TGG + chr1_3:63574193-63574212 Msa0132500:intron 35.0%
ATACTCCTGCAAGTAAACAT+TGG - chr1_3:63574366-63574385 None:intergenic 35.0%
AATGTTTACTTGCAGGAGTA+TGG + chr1_3:63574365-63574384 Msa0132500:intron 35.0%
TGGTGTAAATTTCTATCCTC+TGG + chr1_3:63574442-63574461 Msa0132500:CDS 35.0%
GGTGTAAATTTCTATCCTCT+GGG + chr1_3:63574443-63574462 Msa0132500:CDS 35.0%
CGATATAAAGCAGCTAAAAG+AGG - chr1_3:63574587-63574606 None:intergenic 35.0%
TAGAATGCAGTGTTATACCA+TGG + chr1_3:63574647-63574666 Msa0132500:intron 35.0%
!! TCTCTTGGAGTTTTCTGAAA+AGG + chr1_3:63574689-63574708 Msa0132500:intron 35.0%
TAATCTTCAATGCAAGGATC+AGG - chr1_3:63575200-63575219 None:intergenic 35.0%
GTTGGATAGAAAATGGGATA+TGG - chr1_3:63575296-63575315 None:intergenic 35.0%
TTCTAATCACTCACCATATG+CGG - chr1_3:63575531-63575550 None:intergenic 35.0%
TTTGATCAAGTAAGATGGGA+TGG - chr1_3:63575582-63575601 None:intergenic 35.0%
! TTTTGCCATCTAAAAAGGCT+TGG - chr1_3:63575677-63575696 None:intergenic 35.0%
ACAAATTAAACTCACGTCCA+TGG - chr1_3:63575980-63575999 None:intergenic 35.0%
!!! TTTTTTACCATCCCCTTTCT+CGG + chr1_3:63576159-63576178 Msa0132500:intron 35.0%
!!! TTTTAAAAGGCACCGAGAAA+GGG - chr1_3:63576174-63576193 None:intergenic 35.0%
!!! TTTTTAAAAGGCACCGAGAA+AGG - chr1_3:63576175-63576194 None:intergenic 35.0%
!! TTTCTCAAAGTGCTGGTTAT+TGG + chr1_3:63576267-63576286 Msa0132500:CDS 35.0%
!! TTCTCAAAGTGCTGGTTATT+GGG + chr1_3:63576268-63576287 Msa0132500:CDS 35.0%
!! TAATTTCTGGCCTTCCTTAT+TGG + chr1_3:63576345-63576364 Msa0132500:intron 35.0%
TGCAAATGGCAAGGAAATAT+TGG - chr1_3:63576381-63576400 None:intergenic 35.0%
GCAGCTGTCTTATATAATTG+TGG + chr1_3:63576398-63576417 Msa0132500:intron 35.0%
TACATGCTGAAGTATGCAAT+AGG - chr1_3:63576492-63576511 None:intergenic 35.0%
ATTTACCAACTGCCTATATG+TGG + chr1_3:63576529-63576548 Msa0132500:CDS 35.0%
AAGCACCATAAGGTTATTTG+TGG + chr1_3:63576863-63576882 Msa0132500:intron 35.0%
CTTAGAAGAATTGGTCCTTA+AGG + chr1_3:63576953-63576972 Msa0132500:intron 35.0%
! TTGTTGGTTACTGTTTCTTG+AGG + chr1_3:63577022-63577041 Msa0132500:CDS 35.0%
ATGAGTCAAACTATCAACCA+CGG + chr1_3:63577046-63577065 Msa0132500:CDS 35.0%
!! ATATTTTGGATTTGGGAGCA+TGG + chr1_3:63577110-63577129 Msa0132500:CDS 35.0%
GACAAATATGATACCTCAGT+TGG + chr1_3:63577363-63577382 Msa0132500:intron 35.0%
AAAATACACTATGCCAACTG+AGG - chr1_3:63577379-63577398 None:intergenic 35.0%
!!! TTTTTTGCCCACTACATGTT+TGG + chr1_3:63577395-63577414 Msa0132500:intron 35.0%
!! GTTTTCATGTTCTAGACAAG+GGG - chr1_3:63577498-63577517 None:intergenic 35.0%
!!! GCTGTTTTTATAAGCTATCC+TGG + chr1_3:63577743-63577762 Msa0132500:intron 35.0%
!! CTTATTTTCATAAGCTCTCC+AGG - chr1_3:63577764-63577783 None:intergenic 35.0%
! ATCTTTTAGTAATGTGGCAG+CGG + chr1_3:63577998-63578017 Msa0132500:intron 35.0%
! TGTTGTATCAGGAGCTTTAT+GGG - chr1_3:63578265-63578284 None:intergenic 35.0%
TTGTTGTATCAGGAGCTTTA+TGG - chr1_3:63578266-63578285 None:intergenic 35.0%
!!! GAGCTATTTTGTTTGGTGTT+AGG - chr1_3:63578420-63578439 None:intergenic 35.0%
!! GTCTTCTGAGCTATTTTGTT+TGG - chr1_3:63578427-63578446 None:intergenic 35.0%
AACAAAATAGCTCAGAAGAC+TGG + chr1_3:63578427-63578446 Msa0132500:intron 35.0%
ACAAAATAGCTCAGAAGACT+GGG + chr1_3:63578428-63578447 Msa0132500:intron 35.0%
TTAGCAAGTTCCCTCTAATA+GGG - chr1_3:63578508-63578527 None:intergenic 35.0%
ACCTTACTTAGGGTAAAGTT+TGG + chr1_3:63578538-63578557 Msa0132500:intron 35.0%
TCCAAACTTTACCCTAAGTA+AGG - chr1_3:63578542-63578561 None:intergenic 35.0%
CATACACATGAGTTACTGTT+AGG - chr1_3:63578668-63578687 None:intergenic 35.0%
TGAAACAACATAATCACGTC+TGG + chr1_3:63578783-63578802 Msa0132500:intron 35.0%
ATGTAGATCCTGTACATGTT+AGG + chr1_3:63578855-63578874 Msa0132500:intron 35.0%
ATCAAGATCCTAACATGTAC+AGG - chr1_3:63578866-63578885 None:intergenic 35.0%
!! TAGGATCTTGATTTGGAGAT+AGG + chr1_3:63578874-63578893 Msa0132500:intron 35.0%
TGCAAGAGTTGCATTAAATC+TGG - chr1_3:63579107-63579126 None:intergenic 35.0%
GAGGAATTGTCAACAATGTT+AGG - chr1_3:63579182-63579201 None:intergenic 35.0%
!! TTATTGAGGTGGTTTGCTAA+AGG - chr1_3:63579234-63579253 None:intergenic 35.0%
AAGGAACTGGATCAATCATT+TGG - chr1_3:63579440-63579459 None:intergenic 35.0%
! ATCTAGCCGATTGTATTGAT+TGG - chr1_3:63579632-63579651 None:intergenic 35.0%
! ATCTAGCTGATTGTATTGGT+TGG + chr1_3:63579680-63579699 Msa0132500:intron 35.0%
!! TCAGAAAGCGTTGTTCAAAT+CGG + chr1_3:63579725-63579744 Msa0132500:CDS 35.0%
TACAGAGTTGAGTTTGAGAA+CGG + chr1_3:63579776-63579795 Msa0132500:CDS 35.0%
TATTCGTAGAATACTCATCG+AGG + chr1_3:63579826-63579845 Msa0132500:CDS 35.0%
TCAATCGTTTAGGAAGAATG+AGG + chr1_3:63579883-63579902 Msa0132500:CDS 35.0%
CAATCGTTTAGGAAGAATGA+GGG + chr1_3:63579884-63579903 Msa0132500:CDS 35.0%
!! GTGATTGTGATGGGTTGTAA+TGG + chr1_3:63572007-63572026 Msa0132500:exon 40.0%
TGACGATTCACCTTCATCTA+AGG + chr1_3:63572141-63572160 Msa0132500:CDS 40.0%
ATTCACCTTCATCTAAGGAG+AGG + chr1_3:63572146-63572165 Msa0132500:CDS 40.0%
TTCACCTTCATCTAAGGAGA+GGG + chr1_3:63572147-63572166 Msa0132500:CDS 40.0%
GTTACTTCTTTGCCACACAA+AGG + chr1_3:63572187-63572206 Msa0132500:CDS 40.0%
AATGAGCACAAACCTTTGTG+TGG - chr1_3:63572202-63572221 None:intergenic 40.0%
GTTAGTGTTAGTGTCGTATC+CGG + chr1_3:63572261-63572280 Msa0132500:intron 40.0%
TGAAACAACGACACAAACAC+CGG - chr1_3:63572283-63572302 None:intergenic 40.0%
! AAATTAGTCGGTCTTTTGCC+TGG - chr1_3:63572613-63572632 None:intergenic 40.0%
GCAAAAGACCGACTAATTTG+AGG + chr1_3:63572614-63572633 Msa0132500:intron 40.0%
ATTGGACGCCTCAAATTAGT+CGG - chr1_3:63572625-63572644 None:intergenic 40.0%
!! GCTAAGTCTCTGGCTTTAAA+TGG - chr1_3:63572669-63572688 None:intergenic 40.0%
CACCATTAAACCAACCCAAA+TGG + chr1_3:63572761-63572780 Msa0132500:intron 40.0%
!! ACCCATTTGGGTTGGTTTAA+TGG - chr1_3:63572766-63572785 None:intergenic 40.0%
ATAATTAGGTGCATGGGTGT+TGG + chr1_3:63573001-63573020 Msa0132500:intron 40.0%
AAATAGTGGCTATAGCGTAG+TGG + chr1_3:63573025-63573044 Msa0132500:intron 40.0%
TCAAATTCCACTACGCTACA+GGG - chr1_3:63573132-63573151 None:intergenic 40.0%
TTCAAATTCCACTACGCTAC+AGG - chr1_3:63573133-63573152 None:intergenic 40.0%
!! CAAAAGCATTCAACCAAGGA+AGG - chr1_3:63573202-63573221 None:intergenic 40.0%
! CTTCCTTGGTTGAATGCTTT+TGG + chr1_3:63573200-63573219 Msa0132500:intron 40.0%
!! AGACCAAAAGCATTCAACCA+AGG - chr1_3:63573206-63573225 None:intergenic 40.0%
GGTTAGAAACAATAGTCCAC+AGG - chr1_3:63573233-63573252 None:intergenic 40.0%
! TCGAAGGCATGACCTAATAT+TGG + chr1_3:63573413-63573432 Msa0132500:CDS 40.0%
CTGACAGTCTGTCCAATATT+AGG - chr1_3:63573428-63573447 None:intergenic 40.0%
AATATTGGACAGACTGTCAG+AGG + chr1_3:63573428-63573447 Msa0132500:CDS 40.0%
CAAGTTTCACTGTATGTGGA+TGG + chr1_3:63573466-63573485 Msa0132500:intron 40.0%
GTGGATGGCCTAAAATTTCA+AGG + chr1_3:63573481-63573500 Msa0132500:intron 40.0%
! GGTTAGCAATCAGTTTTTGC+TGG - chr1_3:63573647-63573666 None:intergenic 40.0%
!! CTACCGACTCTTCAAAAGAT+TGG - chr1_3:63573749-63573768 None:intergenic 40.0%
ATACTTGTGGTTGGAACTAG+AGG + chr1_3:63573828-63573847 Msa0132500:CDS 40.0%
GCTCAATAAGGAAAAGCCTA+GGG - chr1_3:63574189-63574208 None:intergenic 40.0%
AGCTCAATAAGGAAAAGCCT+AGG - chr1_3:63574190-63574209 None:intergenic 40.0%
AATCGCCAATCAGCTCAATA+AGG - chr1_3:63574201-63574220 None:intergenic 40.0%
AAGACATTTGTAAGGTCAGC+TGG + chr1_3:63574422-63574441 Msa0132500:CDS 40.0%
GTAAATTTCTATCCTCTGGG+TGG + chr1_3:63574446-63574465 Msa0132500:CDS 40.0%
GTAAGTCCATATGCAGTTCT+AGG - chr1_3:63574866-63574885 None:intergenic 40.0%
TCTTCACCCTACACTACAAT+TGG - chr1_3:63574989-63575008 None:intergenic 40.0%
AACAACAACCAAAGCTTAGG+TGG + chr1_3:63575080-63575099 Msa0132500:intron 40.0%
AATAAAGGTCTGATTCCGTC+TGG + chr1_3:63575377-63575396 Msa0132500:CDS 40.0%
TAACCAAAGAAAGCAGCTGA+AGG + chr1_3:63575415-63575434 Msa0132500:CDS 40.0%
ATAATAGCCTGAGCTGTGAA+GGG - chr1_3:63575497-63575516 None:intergenic 40.0%
AATAATAGCCTGAGCTGTGA+AGG - chr1_3:63575498-63575517 None:intergenic 40.0%
TCTAATCACTCACCATATGC+GGG - chr1_3:63575530-63575549 None:intergenic 40.0%
CCATGAATGTTGTGTTTACG+AGG - chr1_3:63575705-63575724 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG + chr1_3:63575702-63575721 Msa0132500:intron 40.0%
AAATTATGTGCTAGGAGCCT+TGG - chr1_3:63575872-63575891 None:intergenic 40.0%
ACATCTTCTTCACAATGCCA+TGG + chr1_3:63575960-63575979 Msa0132500:CDS 40.0%
!! TTTAAAAGGCACCGAGAAAG+GGG - chr1_3:63576173-63576192 None:intergenic 40.0%
AACAGGTTTGCCAATAAGGA+AGG - chr1_3:63576358-63576377 None:intergenic 40.0%
TTGGAACAGGTTTGCCAATA+AGG - chr1_3:63576362-63576381 None:intergenic 40.0%
TGGCAAGGAAATATTGGAAC+AGG - chr1_3:63576375-63576394 None:intergenic 40.0%
TTGTGGATCTACTGATATGG+TGG + chr1_3:63576415-63576434 Msa0132500:CDS 40.0%
TGTGGATCTACTGATATGGT+GGG + chr1_3:63576416-63576435 Msa0132500:CDS 40.0%
AAGATGAGGACTCCACATAT+AGG - chr1_3:63576544-63576563 None:intergenic 40.0%
TTGTCCATACCACTTGGTTT+CGG - chr1_3:63576570-63576589 None:intergenic 40.0%
! GGCTCTTTAGTTGATGTTGT+TGG + chr1_3:63577006-63577025 Msa0132500:CDS 40.0%
TGAGTCAAACTATCAACCAC+GGG + chr1_3:63577047-63577066 Msa0132500:CDS 40.0%
!!! GCGGTCCTTTTTTAATCCAT+TGG - chr1_3:63577083-63577102 None:intergenic 40.0%
AATAAGCTGTAGCCAGCTTA+TGG + chr1_3:63577778-63577797 Msa0132500:intron 40.0%
CTTATGACATGTCCATAAGC+TGG - chr1_3:63577793-63577812 None:intergenic 40.0%
!! AATTGGTCTTGCTCTGTGAT+TGG + chr1_3:63578031-63578050 Msa0132500:intron 40.0%
TTGTATTTGGGTGATTGTCG+TGG + chr1_3:63578091-63578110 Msa0132500:intron 40.0%
TCCTGATACAACAACCACAT+AGG + chr1_3:63578272-63578291 Msa0132500:intron 40.0%
CCTGATACAACAACCACATA+GGG + chr1_3:63578273-63578292 Msa0132500:intron 40.0%
! AGTGTTTTCTCTTCTCGCTA+GGG - chr1_3:63578341-63578360 None:intergenic 40.0%
! TAGTGTTTTCTCTTCTCGCT+AGG - chr1_3:63578342-63578361 None:intergenic 40.0%
TTAACTAACGGTAGTTTGGG+TGG - chr1_3:63578456-63578475 None:intergenic 40.0%
! AGATGAAGCATCCCTATTAG+AGG + chr1_3:63578494-63578513 Msa0132500:intron 40.0%
! GATGAAGCATCCCTATTAGA+GGG + chr1_3:63578495-63578514 Msa0132500:intron 40.0%
CTTAGCAAGTTCCCTCTAAT+AGG - chr1_3:63578509-63578528 None:intergenic 40.0%
GAGGAGATGATAACCTCAAA+GGG - chr1_3:63578578-63578597 None:intergenic 40.0%
AGAGGAGATGATAACCTCAA+AGG - chr1_3:63578579-63578598 None:intergenic 40.0%
ATACTTGAGCAACTGTCAAG+AGG - chr1_3:63578597-63578616 None:intergenic 40.0%
TTGCTGAGGAAAATTTGGAC+TGG - chr1_3:63578829-63578848 None:intergenic 40.0%
GGAGATAGGTAATAGGAAGA+AGG + chr1_3:63578888-63578907 Msa0132500:intron 40.0%
TAGGAAGAAGGATGTTGATC+TGG + chr1_3:63578900-63578919 Msa0132500:intron 40.0%
ACAATTCCTCTACCATGCAT+GGG + chr1_3:63579192-63579211 Msa0132500:intron 40.0%
! CAATTTGATTCGACGGAAGA+AGG - chr1_3:63579459-63579478 None:intergenic 40.0%
!! GTTTCAGAACGGTGTTTTTG+AGG - chr1_3:63579525-63579544 None:intergenic 40.0%
!! GTTTGAGAACGGTGTTTTTG+AGG + chr1_3:63579787-63579806 Msa0132500:CDS 40.0%
ACAAAATCATAGCATGACGG+CGG + chr1_3:63579934-63579953 Msa0132500:CDS 40.0%
CAATGACTGTTGGGTAGTAG+TGG + chr1_3:63571781-63571800 Msa0132500:five_prime_UTR 45.0%
TCACCTTCATCTAAGGAGAG+GGG + chr1_3:63572148-63572167 Msa0132500:CDS 45.0%
!! ATTTCAGTGGGCTAAGTCTC+TGG - chr1_3:63572679-63572698 None:intergenic 45.0%
GAGACTTAGCCCACTGAAAT+TGG + chr1_3:63572679-63572698 Msa0132500:intron 45.0%
TGCATGCTTACATCCTTCCT+TGG + chr1_3:63573186-63573205 Msa0132500:intron 45.0%
!!! TGCTTTTGGTCTTGTTCCTG+TGG + chr1_3:63573214-63573233 Msa0132500:intron 45.0%
CATTGCATCACAGCTCCTAT+TGG + chr1_3:63573318-63573337 Msa0132500:CDS 45.0%
GGGTTTCTCTCAGTTCCAAT+AGG - chr1_3:63573336-63573355 None:intergenic 45.0%
! AGGCGATGTACAACCTTTTG+TGG + chr1_3:63573848-63573867 Msa0132500:CDS 45.0%
! TTTGTAAGTTGGGGATCCCT+AGG + chr1_3:63574170-63574189 Msa0132500:intron 45.0%
TTACATCCTGCCAATACTCG+AGG - chr1_3:63574476-63574495 None:intergenic 45.0%
!! GAGTATTGGCAGGATGTAAG+AGG + chr1_3:63574477-63574496 Msa0132500:intron 45.0%
TAAAGCAGCTAAAAGAGGGC+TGG - chr1_3:63574582-63574601 None:intergenic 45.0%
AACCAAAGCTTAGGTGGAGT+TGG + chr1_3:63575086-63575105 Msa0132500:intron 45.0%
AACCAACTCCACCTAAGCTT+TGG - chr1_3:63575091-63575110 None:intergenic 45.0%
GATATTTCAGTCGGTCCAGA+CGG - chr1_3:63575395-63575414 None:intergenic 45.0%
! TGACCTTCAGCTGCTTTCTT+TGG - chr1_3:63575421-63575440 None:intergenic 45.0%
!! ACAGCACCTGATTTGGAAAC+CGG + chr1_3:63575467-63575486 Msa0132500:CDS 45.0%
TGCCATCTAAAAAGGCTTGG+CGG - chr1_3:63575674-63575693 None:intergenic 45.0%
!! TATTTTTGATTCCGGCCTGC+AGG + chr1_3:63575899-63575918 Msa0132500:intron 45.0%
!! ATTTTTGATTCCGGCCTGCA+GGG + chr1_3:63575900-63575919 Msa0132500:intron 45.0%
TACATCTTGCTGAAGCCCTT+GGG + chr1_3:63575927-63575946 Msa0132500:CDS 45.0%
ATATGCATTTCCCCACCCTT+TGG + chr1_3:63576238-63576257 Msa0132500:CDS 45.0%
TTTGAGAAACACGCGCCAAA+GGG - chr1_3:63576256-63576275 None:intergenic 45.0%
TAAGACAGCTGCAAATGGCA+AGG - chr1_3:63576390-63576409 None:intergenic 45.0%
GTGGATCTACTGATATGGTG+GGG + chr1_3:63576417-63576436 Msa0132500:CDS 45.0%
GCATACTTCAGCATGTATCG+TGG + chr1_3:63576495-63576514 Msa0132500:CDS 45.0%
CTTGGTTTCGGAACAAGATG+AGG - chr1_3:63576558-63576577 None:intergenic 45.0%
CATCTTGTTCCGAAACCAAG+TGG + chr1_3:63576558-63576577 Msa0132500:CDS 45.0%
TGTTCCGAAACCAAGTGGTA+TGG + chr1_3:63576563-63576582 Msa0132500:intron 45.0%
GAAACCAAGTGGTATGGACA+AGG + chr1_3:63576569-63576588 Msa0132500:intron 45.0%
! GGACCGCCTCCTTTATATTT+TGG + chr1_3:63577096-63577115 Msa0132500:CDS 45.0%
CATAAGTAACGACCAACTCC+TGG - chr1_3:63577330-63577349 None:intergenic 45.0%
! TTTTAGTAATGTGGCAGCGG+AGG + chr1_3:63578001-63578020 Msa0132500:intron 45.0%
TGGGTGATTGTCGTGGATTT+CGG + chr1_3:63578098-63578117 Msa0132500:intron 45.0%
CCCTATGTGGTTGTTGTATC+AGG - chr1_3:63578276-63578295 None:intergenic 45.0%
AGACTTGTATGCTCCCTTTG+AGG + chr1_3:63578562-63578581 Msa0132500:intron 45.0%
GACAATTCCTCTACCATGCA+TGG + chr1_3:63579191-63579210 Msa0132500:intron 45.0%
!! GAACGGTGTTTTTGAGGAGT+TGG - chr1_3:63579793-63579812 None:intergenic 45.0%
!! GAACGGTGTTTTTGAGGAGT+TGG + chr1_3:63579793-63579812 Msa0132500:CDS 45.0%
!!! GAAAAAATTATTTTTTTAAA+AGG - chr1_3:63576187-63576206 None:intergenic 5.0%
!!! TAGTTTTTTTTTATTTTTAA+TGG + chr1_3:63578185-63578204 Msa0132500:intron 5.0%
CTTCCCCTCTCCTTAGATGA+AGG - chr1_3:63572154-63572173 None:intergenic 50.0%
CCAATCACACCTTCCACTTG+CGG + chr1_3:63572640-63572659 Msa0132500:intron 50.0%
CAATCACACCTTCCACTTGC+GGG + chr1_3:63572641-63572660 Msa0132500:intron 50.0%
AATCACACCTTCCACTTGCG+GGG + chr1_3:63572642-63572661 Msa0132500:intron 50.0%
! ACCCTGGTGCCAATTTCAGT+GGG - chr1_3:63572691-63572710 None:intergenic 50.0%
! TACCCTGGTGCCAATTTCAG+TGG - chr1_3:63572692-63572711 None:intergenic 50.0%
GGTCTCAGGTTTGATTACCC+TGG - chr1_3:63572707-63572726 None:intergenic 50.0%
CAAACCTGAGACCTTGAGAG+CGG + chr1_3:63572714-63572733 Msa0132500:intron 50.0%
!! TGGTGTTTGACTTGGGACCT+TGG - chr1_3:63572746-63572765 None:intergenic 50.0%
!! GCATGGGTGTTGGCAAATAG+TGG + chr1_3:63573011-63573030 Msa0132500:intron 50.0%
CAGAAAAGAGAGGGCTTCGA+AGG + chr1_3:63573397-63573416 Msa0132500:CDS 50.0%
CAGACTGTCAGAGGATGAGA+AGG + chr1_3:63573437-63573456 Msa0132500:CDS 50.0%
TTTGAAGAGTCGGTAGCGAG+CGG + chr1_3:63573753-63573772 Msa0132500:CDS 50.0%
CTCTTCGCAATGGCCACAAA+AGG - chr1_3:63573864-63573883 None:intergenic 50.0%
TGCCTGAAGTCTCTTCGCAA+TGG - chr1_3:63573874-63573893 None:intergenic 50.0%
! AGGAGTATGGTCATCGCGTT+AGG + chr1_3:63574378-63574397 Msa0132500:intron 50.0%
TGCCAGCCTAGAACTGCATA+TGG + chr1_3:63574857-63574876 Msa0132500:intron 50.0%
!! GTCCATATGCAGTTCTAGGC+TGG - chr1_3:63574862-63574881 None:intergenic 50.0%
! TTCCAAATCAGGTGCTGTGC+AGG - chr1_3:63575465-63575484 None:intergenic 50.0%
!! GGAATGCCGGTTTCCAAATC+AGG - chr1_3:63575476-63575495 None:intergenic 50.0%
ATTGCAAACCCTCCCGCATA+TGG + chr1_3:63575515-63575534 Msa0132500:CDS 50.0%
ATCACTCACCATATGCGGGA+GGG - chr1_3:63575526-63575545 None:intergenic 50.0%
AATCACTCACCATATGCGGG+AGG - chr1_3:63575527-63575546 None:intergenic 50.0%
GTACATCTTGCTGAAGCCCT+TGG + chr1_3:63575926-63575945 Msa0132500:CDS 50.0%
ACATCTTGCTGAAGCCCTTG+GGG + chr1_3:63575928-63575947 Msa0132500:CDS 50.0%
GATGTGAATAGGCACCCCAA+GGG - chr1_3:63575945-63575964 None:intergenic 50.0%
AGATGTGAATAGGCACCCCA+AGG - chr1_3:63575946-63575965 None:intergenic 50.0%
GGGTGGGGAAATGCATATGT+TGG - chr1_3:63576236-63576255 None:intergenic 50.0%
! CTTTGAGAAACACGCGCCAA+AGG - chr1_3:63576257-63576276 None:intergenic 50.0%
GGACTCCACATATAGGCAGT+TGG - chr1_3:63576537-63576556 None:intergenic 50.0%
GCATCCTTGTCCATACCACT+TGG - chr1_3:63576576-63576595 None:intergenic 50.0%
GTCAAACTATCAACCACGGG+AGG + chr1_3:63577050-63577069 Msa0132500:CDS 50.0%
CATTGGAGAAAATCCTCCCG+TGG - chr1_3:63577066-63577085 None:intergenic 50.0%
! CACGGGAGGATTTTCTCCAA+TGG + chr1_3:63577064-63577083 Msa0132500:CDS 50.0%
GCAGCGGAGGAACATCTAAT+TGG + chr1_3:63578014-63578033 Msa0132500:intron 50.0%
! TTGTGTGTTGGTGCCCTATG+TGG - chr1_3:63578289-63578308 None:intergenic 50.0%
ATGGATCCCATGCATGGTAG+AGG - chr1_3:63579201-63579220 None:intergenic 50.0%
TCTACCATGCATGGGATCCA+TGG + chr1_3:63579200-63579219 Msa0132500:intron 50.0%
GATTCGACGGAAGAAGGAAC+TGG - chr1_3:63579453-63579472 None:intergenic 50.0%
AAATCATAGCATGACGGCGG+CGG + chr1_3:63579937-63579956 Msa0132500:CDS 50.0%
GGAGAGGGGAAGCCAATCAT+CGG + chr1_3:63572162-63572181 Msa0132500:CDS 55.0%
! CCGCAAGTGGAAGGTGTGAT+TGG - chr1_3:63572643-63572662 None:intergenic 55.0%
CTTTAAATGGGCCCCGCAAG+TGG - chr1_3:63572656-63572675 None:intergenic 55.0%
AGCCCACTGAAATTGGCACC+AGG + chr1_3:63572686-63572705 Msa0132500:intron 55.0%
GCCCACTGAAATTGGCACCA+GGG + chr1_3:63572687-63572706 Msa0132500:intron 55.0%
! CTTGGATTGTGCCGCTCTCA+AGG - chr1_3:63572728-63572747 None:intergenic 55.0%
CTTGAGAGCGGCACAATCCA+AGG + chr1_3:63572726-63572745 Msa0132500:intron 55.0%
AGTGTAGCCCTGTAGCGTAG+TGG + chr1_3:63573122-63573141 Msa0132500:intron 55.0%
AGGATGTAAGCATGCACCCC+CGG - chr1_3:63573182-63573201 None:intergenic 55.0%
GGCCATTGCGAAGAGACTTC+AGG + chr1_3:63573869-63573888 Msa0132500:CDS 55.0%
GGGTGGTGATCCTCGAGTAT+TGG + chr1_3:63574463-63574482 Msa0132500:CDS 55.0%
!! GGTGATCCTCGAGTATTGGC+AGG + chr1_3:63574467-63574486 Msa0132500:CDS 55.0%
! AAATCAGGTGCTGTGCAGGC+TGG - chr1_3:63575461-63575480 None:intergenic 55.0%
AGCCTGCACAGCACCTGATT+TGG + chr1_3:63575460-63575479 Msa0132500:CDS 55.0%
CTGAGCTGTGAAGGGAATGC+CGG - chr1_3:63575489-63575508 None:intergenic 55.0%
! CGCCGCCAAGCCTTTTTAGA+TGG + chr1_3:63575669-63575688 Msa0132500:intron 55.0%
GCAAGATGTACATGCCCTGC+AGG - chr1_3:63575917-63575936 None:intergenic 55.0%
!! AAAGGCACCGAGAAAGGGGA+TGG - chr1_3:63576169-63576188 None:intergenic 55.0%
AGAAACACGCGCCAAAGGGT+GGG - chr1_3:63576252-63576271 None:intergenic 55.0%
GCGCGTGTTTCTCAAAGTGC+TGG + chr1_3:63576260-63576279 Msa0132500:CDS 55.0%
! CTGATATGGTGGGGAATGCG+AGG + chr1_3:63576426-63576445 Msa0132500:CDS 55.0%
! ATGGTGGGATTTCGCATGCC+AGG + chr1_3:63577309-63577328 Msa0132500:intron 55.0%
GGATTTCGCATGCCAGGAGT+TGG + chr1_3:63577315-63577334 Msa0132500:intron 55.0%
CTTGCCATGGATCCCATGCA+TGG - chr1_3:63579207-63579226 None:intergenic 55.0%
TGCTAAAGGCCAGCTTGCCA+TGG - chr1_3:63579220-63579239 None:intergenic 55.0%
AAATGGGCCCCGCAAGTGGA+AGG - chr1_3:63572652-63572671 None:intergenic 60.0%
! TGTGCCGCTCTCAAGGTCTC+AGG - chr1_3:63572721-63572740 None:intergenic 60.0%
ACTCGAGGATCACCACCCAG+AGG - chr1_3:63574461-63574480 None:intergenic 60.0%
CGGCATTCCCTTCACAGCTC+AGG + chr1_3:63575487-63575506 Msa0132500:CDS 60.0%
GATGTACATGCCCTGCAGGC+CGG - chr1_3:63575913-63575932 None:intergenic 60.0%
GAAACACGCGCCAAAGGGTG+GGG - chr1_3:63576251-63576270 None:intergenic 60.0%
GAGAAACACGCGCCAAAGGG+TGG - chr1_3:63576253-63576272 None:intergenic 60.0%
GCATGGGATCCATGGCAAGC+TGG + chr1_3:63579208-63579227 Msa0132500:intron 60.0%
TCATAGCATGACGGCGGCGG+CGG + chr1_3:63579940-63579959 Msa0132500:CDS 65.0%
TAGCATGACGGCGGCGGCGG+CGG + chr1_3:63579943-63579962 Msa0132500:CDS 75.0%
! TGACGGCGGCGGCGGCGGTT+TGG + chr1_3:63579948-63579967 Msa0132500:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63571690 63579973 63571690 ID=Msa0132500;Name=Msa0132500
chr1_3 mRNA 63571690 63579973 63571690 ID=Msa0132500-mRNA-1;Parent=Msa0132500;Name=Msa0132500-mRNA-1;_AED=0.05;_eAED=0.10;_QI=326|0.88|0.8|1|0.88|0.9|10|0|528
chr1_3 exon 63571690 63572208 63571690 ID=Msa0132500-mRNA-1:exon:21263;Parent=Msa0132500-mRNA-1
chr1_3 exon 63573310 63573458 63573310 ID=Msa0132500-mRNA-1:exon:21264;Parent=Msa0132500-mRNA-1
chr1_3 exon 63573648 63573890 63573648 ID=Msa0132500-mRNA-1:exon:21265;Parent=Msa0132500-mRNA-1
chr1_3 exon 63574380 63574491 63574380 ID=Msa0132500-mRNA-1:exon:21266;Parent=Msa0132500-mRNA-1
chr1_3 exon 63575366 63575536 63575366 ID=Msa0132500-mRNA-1:exon:21267;Parent=Msa0132500-mRNA-1
chr1_3 exon 63575921 63575984 63575921 ID=Msa0132500-mRNA-1:exon:21268;Parent=Msa0132500-mRNA-1
chr1_3 exon 63576232 63576289 63576232 ID=Msa0132500-mRNA-1:exon:21269;Parent=Msa0132500-mRNA-1
chr1_3 exon 63576402 63576579 63576402 ID=Msa0132500-mRNA-1:exon:21270;Parent=Msa0132500-mRNA-1
chr1_3 exon 63577001 63577131 63577001 ID=Msa0132500-mRNA-1:exon:21271;Parent=Msa0132500-mRNA-1
chr1_3 exon 63579686 63579973 63579686 ID=Msa0132500-mRNA-1:exon:21272;Parent=Msa0132500-mRNA-1
chr1_3 five_prime_UTR 63571690 63572015 63571690 ID=Msa0132500-mRNA-1:five_prime_utr;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63572016 63572208 63572016 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63573310 63573458 63573310 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63573648 63573890 63573648 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63574380 63574491 63574380 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63575366 63575536 63575366 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63575921 63575984 63575921 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63576232 63576289 63576232 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63576402 63576579 63576402 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63577001 63577131 63577001 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
chr1_3 CDS 63579686 63579973 63579686 ID=Msa0132500-mRNA-1:cds;Parent=Msa0132500-mRNA-1
Gene Sequence

>Msa0132500

ATGGGTTGTAATGGGATTGAACATTTGTGCAAAGAAGTAGTTGAAGATGAAAAGGGTCTAAGAAAAATGGATGATGATAAGTTAGTTAGTGTGAGAGGTGAAAGTGAAATTATGTCTCGAGAAGATGACGATTCACCTTCATCTAAGGAGAGGGGAAGCCAATCATCGGAAGTTACTTCTTTGCCACACAAAGGTTTGGAACATTGCATCACAGCTCCTATTGGAACTGAGAGAAACCCACTAATAGCTGAAGATGAGATTATGATTTCTAGATCAATGACAGAAAAGAGAGGGCTTCGAAGGCATGACCTAATATTGGACAGACTGTCAGAGGATGAGAAGCAAAAACTGATTGCTAACCTAGTGAAGATACAAAAAGATGGGACTGTTCAAGTTGATATAGAAACAAGTGCTTCAGTTGCTTCAGAGTTGTTAGAGTTCCAATCTTTTGAAGAGTCGGTAGCGAGCGGAAATTTGATTATTTCTGATTCAAATAAATCAGTTCCACGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGATGTACAACCTTTTGTGGCCATTGCGAAGAGACTTCAGGAGTATGGTCATCGCGTTAGGCTAGCAACTCATGCTAATTTCAAGACATTTGTAAGGTCAGCTGGTGTAAATTTCTATCCTCTGGGTGGTGATCCTCGAGTATTGGCAGGATATATGGCAAGGAATAAAGGTCTGATTCCGTCTGGACCGACTGAAATATCTAACCAAAGAAAGCAGCTGAAGGTCATTATCGATTCTCTTCTTCCAGCCTGCACAGCACCTGATTTGGAAACCGGCATTCCCTTCACAGCTCAGGCTATTATTGCAAACCCTCCCGCATATGGGCATGTACATCTTGCTGAAGCCCTTGGGGTGCCTATTCACATCTTCTTCACAATGCCATGGACGCCAACATATGCATTTCCCCACCCTTTGGCGCGTGTTTCTCAAAGTGCTGGTTATTGGCTGTCTTATATAATTGTGGATCTACTGATATGGTGGGGAATGCGAGGAATCATTAATGATTTCAGAAAAAGAACGTTGAAGCTTGCTCCTATTGCATACTTCAGCATGTATCGTGGATCAATATCTCATTTACCAACTGCCTATATGTGGAGTCCTCATCTTGTTCCGAAACCAAGTGACTGGGGCTCTTTAGTTGATGTTGTTGGTTACTGTTTCTTGAGGCATGAGTCAAACTATCAACCACGGGAGGATTTTCTCCAATGGATTAAAAAAGGACCGCCTCCTTTATATTTTGGATTTGGGAGCATGCTGATTGTATTGGTTGGACGACACATTTTGAAAGAGTTTTCAGAAAGCGTTGTTCAAATCGGAAAACTTTTGAGTTATAAAATCGGTTTATACAGAGTTGAGTTTGAGAACGGTGTTTTTGAGGAGTTGGATAGTAGTGTTATTCGTAGAATACTCATCGAGGATTGTGATTTGATTCAACAGAAGAAGGAATTGAATCAATCGTTTAGGAAGAATGAGGGAGAGAATGAGAGAATCGATTTCTTAGAACAAAATCATAGCATGACGGCGGCGGCGGCGGTTTGGTAG

Protein sequence

>Msa0132500

MGCNGIEHLCKEVVEDEKGLRKMDDDKLVSVRGESEIMSREDDDSPSSKERGSQSSEVTSLPHKGLEHCITAPIGTERNPLIAEDEIMISRSMTEKRGLRRHDLILDRLSEDEKQKLIANLVKIQKDGTVQVDIETSASVASELLEFQSFEESVASGNLIISDSNKSVPRLQIVILVVGTRGDVQPFVAIAKRLQEYGHRVRLATHANFKTFVRSAGVNFYPLGGDPRVLAGYMARNKGLIPSGPTEISNQRKQLKVIIDSLLPACTAPDLETGIPFTAQAIIANPPAYGHVHLAEALGVPIHIFFTMPWTPTYAFPHPLARVSQSAGYWLSYIIVDLLIWWGMRGIINDFRKRTLKLAPIAYFSMYRGSISHLPTAYMWSPHLVPKPSDWGSLVDVVGYCFLRHESNYQPREDFLQWIKKGPPPLYFGFGSMLIVLVGRHILKEFSESVVQIGKLLSYKIGLYRVEFENGVFEELDSSVIRRILIEDCDLIQQKKELNQSFRKNEGENERIDFLEQNHSMTAAAAVW*