AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006470 MtrunA17_Chr1g0149651 95.216 439 10 4 1 431 1 436 0.0 851
Msa0006470 MtrunA17_Chr3g0137241 66.743 439 74 9 1 433 1 373 0.0 548
Msa0006470 MtrunA17_Chr2g0305101 82.331 266 43 2 168 430 90 354 4.72e-165 468
Msa0006470 MtrunA17_Chr4g0065241 82.213 253 43 2 168 418 66 318 1.04e-155 444
Msa0006470 MtrunA17_Chr5g0398181 70.566 265 72 2 173 431 28 292 1.20e-129 376
Msa0006470 MtrunA17_Chr1g0192791 35.600 250 130 8 173 415 20 245 3.89e-31 120
Msa0006470 MtrunA17_Chr2g0289201 31.148 244 143 3 173 415 118 337 3.39e-30 120
Msa0006470 MtrunA17_Chr5g0413201 34.553 246 134 5 173 415 73 294 8.39e-28 112
Msa0006470 MtrunA17_Chr1g0151961 33.333 246 138 6 173 415 120 342 1.90e-27 112
Msa0006470 MtrunA17_Chr5g0439391 31.429 245 134 5 175 415 49 263 5.49e-23 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006470 AT5G25220.2 65.306 441 121 9 1 431 1 419 0.0 527
Msa0006470 AT5G25220.1 65.227 440 121 9 1 430 1 418 0.0 525
Msa0006470 AT5G11060.1 74.622 331 58 5 107 430 71 382 3.53e-172 488
Msa0006470 AT4G32040.1 55.204 442 126 11 1 432 1 380 3.37e-152 437
Msa0006470 AT4G32040.2 55.329 441 125 11 1 431 1 379 6.02e-152 436
Msa0006470 AT1G62990.1 65.614 285 94 3 149 430 7 290 2.50e-131 380
Msa0006470 AT1G70510.1 35.433 254 133 9 166 415 63 289 6.70e-32 124
Msa0006470 AT1G70510.2 34.252 254 140 8 166 415 63 293 2.65e-30 119
Msa0006470 AT1G23380.1 35.458 251 123 8 173 415 86 305 4.67e-29 116
Msa0006470 AT4G08150.1 34.387 253 129 7 173 415 135 360 9.56e-28 114
Msa0006470 AT1G23380.2 35.178 253 123 9 173 415 86 307 3.20e-27 111
Msa0006470 AT1G62360.1 33.200 250 132 5 173 415 122 343 2.57e-26 109

Find 202 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATATGCTAAAACAAAT+TGG 0.156743 1_1:-9372404 Msa0006470:three_prime_UTR
TAGTATAATGCTACATAATT+AGG 0.212748 1_1:-9372431 Msa0006470:three_prime_UTR
GTGGTTTGGAGTTGGTTATT+AGG 0.252230 1_1:+9375975 None:intergenic
TTGTTCTTTAAATTGGTATT+TGG 0.257518 1_1:-9372239 Msa0006470:three_prime_UTR
ACGTACTAGGTAGCTATTAT+AGG 0.274941 1_1:+9376193 None:intergenic
ACCACCAAACGCAGAGTATT+TGG 0.277454 1_1:+9375458 None:intergenic
GTGTAATAACCACTAATCTT+AGG 0.277516 1_1:+9372983 None:intergenic
TCGGAATCAGGTTTGGAGTT+AGG 0.291079 1_1:+9375999 None:intergenic
TGGTTTGGAGTTGGTTATTA+GGG 0.296401 1_1:+9375976 None:intergenic
GGAAATGAAGATAAAATATT+GGG 0.297720 1_1:+9376367 None:intergenic
CTTGTCTTACACGCTCCATT+AGG 0.305466 1_1:+9373635 None:intergenic
AGGAAATGAAGATAAAATAT+TGG 0.312300 1_1:+9376366 None:intergenic
TTATACTAAAGCAGGCCTTC+AGG 0.312512 1_1:+9372446 None:intergenic
AAACCATTTGTACAACAAAT+TGG 0.312918 1_1:+9372199 None:intergenic
AGAAGGAAAGGGAGGGAAGA+AGG 0.318735 1_1:+9376481 None:intergenic
CCACTAATCTTAGGGGAGTT+TGG 0.319284 1_1:+9372992 None:intergenic
AACTAAAGCAAATTAATAAC+TGG 0.324917 1_1:-9373128 Msa0006470:CDS
ATCATCACACATCCTTTGTT+TGG 0.337911 1_1:-9376530 Msa0006470:five_prime_UTR
CACTGACGCCCTTCTTGTTA+AGG 0.338297 1_1:-9372963 Msa0006470:three_prime_UTR
CGGAATCAGGTTTGGAGTTA+GGG 0.345170 1_1:+9376000 None:intergenic
GTTAAACGTACTGTTGGATA+TGG 0.348322 1_1:+9373378 None:intergenic
TCAATCAAAGGAAGAGGAAT+TGG 0.349434 1_1:-9373101 Msa0006470:CDS
CAAACATACACACACTTGTT+TGG 0.350011 1_1:-9376148 Msa0006470:five_prime_UTR
GGGGAAGAGTGAGGTGGCGG+TGG 0.352138 1_1:-9375664 Msa0006470:CDS
GCAAGGTTGGTGCAGGAAAC+TGG 0.359590 1_1:-9373156 Msa0006470:CDS
TTAGTGAAGGTTATAGTAAA+GGG 0.362730 1_1:-9372898 Msa0006470:three_prime_UTR
GAAGGAAAGGGAGGGAAGAA+GGG 0.362993 1_1:+9376482 None:intergenic
TTTGGTGTTGTTGGTTTGGT+TGG 0.367389 1_1:+9376306 None:intergenic
CAATCCTTACAAAGCCTAAC+AGG 0.372024 1_1:-9374404 Msa0006470:intron
TTTGTTTGGTGTTGTTGGTT+TGG 0.374031 1_1:+9376302 None:intergenic
TCATTCTCTGTTGGTATAAG+AGG 0.376610 1_1:+9373664 None:intergenic
CAAAGAACTTGACCATTTCA+TGG 0.380421 1_1:-9375424 Msa0006470:intron
TGTAATAACCACTAATCTTA+GGG 0.381221 1_1:+9372984 None:intergenic
GGTGCGGATAACATGGGATT+TGG 0.387749 1_1:-9373688 Msa0006470:CDS
AGACGAGCTGGGAAACTTCC+TGG 0.389865 1_1:-9373450 Msa0006470:CDS
AAGAGTGAGGTGGCGGTGGA+TGG 0.389997 1_1:-9375660 Msa0006470:CDS
GGTACCTGTTAGGCTTTGTA+AGG 0.392039 1_1:+9374400 None:intergenic
ACGGAATGAGTTATTGTTGT+TGG 0.397407 1_1:+9376046 None:intergenic
AACTCCAAACCACACCTAAC+TGG 0.409860 1_1:-9375965 Msa0006470:CDS
TGGTTATTAGGGTCGGAATC+AGG 0.411326 1_1:+9375987 None:intergenic
GTGTCTGTGTCAATGCTTCA+TGG 0.412831 1_1:-9372722 Msa0006470:three_prime_UTR
GATGGAGACGGAGGAGGAGC+TGG 0.415977 1_1:-9375642 Msa0006470:CDS
CTTGTGAAAGATGTTGGTTT+TGG 0.416399 1_1:+9376099 None:intergenic
CAATGGAAGATGAAGAAGAA+GGG 0.419065 1_1:+9376436 None:intergenic
TTTATGTTTGTATAATATTG+AGG 0.421159 1_1:-9372332 Msa0006470:three_prime_UTR
TTGTCTTACACGCTCCATTA+GGG 0.421646 1_1:+9373636 None:intergenic
GTCTGACGATGAAGATGAAC+AGG 0.422271 1_1:-9373752 Msa0006470:CDS
TAATAAACATTCATCTTAAG+AGG 0.423129 1_1:-9372600 Msa0006470:three_prime_UTR
ATGAGTTATTGTTGTTGGTT+TGG 0.423383 1_1:+9376051 None:intergenic
TTGGTGTTGTTGGTTTGGTT+GGG 0.424232 1_1:+9376307 None:intergenic
GAGGAGCTGGATTGGTGAAC+TGG 0.424541 1_1:-9375629 Msa0006470:CDS
GAGTTAGGGTCGGGTGAGTC+TGG 0.425434 1_1:+9376014 None:intergenic
TGACACAACTTCTGTCCTTA+AGG 0.425689 1_1:-9373427 Msa0006470:CDS
TGAGCCAGTTAGGTGTGGTT+TGG 0.429844 1_1:+9375961 None:intergenic
CGATTACTTCACCGTGTTGA+CGG 0.433544 1_1:+9375763 None:intergenic
CTTAGTGAAGGTTATAGTAA+AGG 0.438469 1_1:-9372899 Msa0006470:three_prime_UTR
CGGTGTCGGAAGTTTGTTGA+AGG 0.438867 1_1:+9375826 None:intergenic
ACTATATGCTAAAACAAATT+GGG 0.439403 1_1:-9372403 Msa0006470:three_prime_UTR
GAGGTGGAAGGCGGAGATAA+TGG 0.444829 1_1:-9375598 Msa0006470:CDS
TATACTAAAGCAGGCCTTCA+GGG 0.448190 1_1:+9372447 None:intergenic
GTTGCCCCTGTACCTTCTCC+AGG 0.448447 1_1:+9373778 None:intergenic
AACATCGACGGTGATGGACT+TGG 0.449142 1_1:-9375687 Msa0006470:CDS
TGGTTTGGTCTGTGAAATGT+TGG 0.450755 1_1:+9376066 None:intergenic
TTGTTGCAATTGTTCTTTGA+AGG 0.451938 1_1:+9374478 None:intergenic
AGAGAATGAAAGGTCCCTAA+TGG 0.452095 1_1:-9373650 Msa0006470:CDS
ACATCGACGGTGATGGACTT+GGG 0.452431 1_1:-9375686 Msa0006470:CDS
ATTAGGGTCGGAATCAGGTT+TGG 0.452477 1_1:+9375992 None:intergenic
CCAAACTCCCCTAAGATTAG+TGG 0.452857 1_1:-9372992 Msa0006470:three_prime_UTR
CGGCACATGTGGCGTGTTTG+AGG 0.457717 1_1:-9375548 Msa0006470:CDS
TACTTGCTTCAGATTAGCAT+TGG 0.459631 1_1:+9372528 None:intergenic
AGTGTCGTTGGTAACGTTGT+TGG 0.460532 1_1:+9375878 None:intergenic
GATGTAATTTCAGTAAAGAA+AGG 0.461024 1_1:-9372633 Msa0006470:three_prime_UTR
TGGAAGCTGTAATGGCTTGT+TGG 0.463261 1_1:-9374436 Msa0006470:CDS
GTGATTGCCACCAAGCCTTA+AGG 0.468131 1_1:+9373412 None:intergenic
TTATGTTTGTATAATATTGA+GGG 0.468226 1_1:-9372331 Msa0006470:three_prime_UTR
TAATCTGAAGCAAGTACAAC+AGG 0.468598 1_1:-9372521 Msa0006470:three_prime_UTR
ATAGCGTTGTTGAGCCAGTT+AGG 0.469554 1_1:+9375951 None:intergenic
TTGGAGTTGGTTATTAGGGT+CGG 0.474556 1_1:+9375980 None:intergenic
AAATACTCTGCGTTTGGTGG+TGG 0.474689 1_1:-9375456 Msa0006470:CDS
CCATGCAATGGAAGCTGTAA+TGG 0.479971 1_1:-9374444 Msa0006470:CDS
AGGGACCTTTCATTCTCTGT+TGG 0.480001 1_1:+9373655 None:intergenic
GTTGTATGAACAGTTGTTGT+CGG 0.481534 1_1:-9375568 Msa0006470:CDS
GGAAGCTGTAATGGCTTGTT+GGG 0.483636 1_1:-9374435 Msa0006470:CDS
TACCATGGTATTGAACTTGA+AGG 0.485015 1_1:+9376220 None:intergenic
ATGTAATTTCAGTAAAGAAA+GGG 0.485825 1_1:-9372632 Msa0006470:three_prime_UTR
CCGTGCAAACCACCGGTCAA+TGG 0.487735 1_1:-9375806 Msa0006470:CDS
AGTTAGGTGTGGTTTGGAGT+TGG 0.488164 1_1:+9375967 None:intergenic
TAACTCGTGTTCTACTTCTC+CGG 0.488870 1_1:+9375725 None:intergenic
TTCAAGACAGTAGAGGTTGA+AGG 0.491189 1_1:+9373069 None:intergenic
TGATGGCGGTGCGGATAACA+TGG 0.492193 1_1:-9373695 Msa0006470:CDS
GCCAAATACTCTGCGTTTGG+TGG 0.493142 1_1:-9375459 Msa0006470:CDS
ATCAGGTTTGGAGTTAGGGT+CGG 0.495240 1_1:+9376004 None:intergenic
CTGGCAGATGGGGAGGTGGA+AGG 0.496148 1_1:-9375610 Msa0006470:CDS
TGTGGAGTAGAAAGAAGGAA+AGG 0.497010 1_1:+9376469 None:intergenic
ATTAGTATAATATAATCATA+AGG 0.498053 1_1:+9372269 None:intergenic
TCTTGAAGAGCAAACGCAAA+AGG 0.498087 1_1:-9373053 Msa0006470:CDS
ATCGACAACGTTACCATGGC+CGG 0.498375 1_1:-9375744 Msa0006470:CDS
CCACCGGTCAATGGCTTGCA+CGG 0.499073 1_1:-9375797 Msa0006470:CDS
CATTCTCTGTTGGTATAAGA+GGG 0.502060 1_1:+9373665 None:intergenic
GTGTTCTACTTCTCCGGCCA+TGG 0.502170 1_1:+9375731 None:intergenic
GCGGTGGATGGAGACGGAGG+AGG 0.505247 1_1:-9375648 Msa0006470:CDS
TCCGTTACCGTCAGTGTCGT+TGG 0.506455 1_1:+9375866 None:intergenic
AAGAAGGGGAGGGTAGAATG+TGG 0.507183 1_1:+9376451 None:intergenic
CAACTTCTGTCCTTAAGGCT+TGG 0.507609 1_1:-9373422 Msa0006470:CDS
GTTGTTGTTGTCGGTGTAGT+GGG 0.509535 1_1:+9375920 None:intergenic
CTTCTGTCCTTAAGGCTTGG+TGG 0.509687 1_1:-9373419 Msa0006470:CDS
AGACGGAGGAGGAGCTGGAT+TGG 0.510601 1_1:-9375637 Msa0006470:CDS
GTTTCACCTGGAGAAGGTAC+AGG 0.511536 1_1:-9373784 Msa0006470:CDS
AGATAAAGCAAGGTTGGTGC+AGG 0.511577 1_1:-9373163 Msa0006470:CDS
TGTGATTTCCTTAACAAGAA+GGG 0.511966 1_1:+9372955 None:intergenic
CCATTACAGCTTCCATTGCA+TGG 0.512486 1_1:+9374444 None:intergenic
ATGTGATTTCCTTAACAAGA+AGG 0.513302 1_1:+9372954 None:intergenic
ACCGGTGGTTTGCACGGTGT+CGG 0.514390 1_1:+9375812 None:intergenic
TAGAATGTGGAGTAGAAAGA+AGG 0.514663 1_1:+9376464 None:intergenic
ATGTAGCATTATACTAAAGC+AGG 0.515908 1_1:+9372438 None:intergenic
GTAACTCTTGTGAAAGATGT+TGG 0.517339 1_1:+9376093 None:intergenic
TCAGGTTTGGAGTTAGGGTC+GGG 0.519463 1_1:+9376005 None:intergenic
CATCGACGGTGATGGACTTG+GGG 0.520169 1_1:-9375685 Msa0006470:CDS
GTGGAGTAGAAAGAAGGAAA+GGG 0.524686 1_1:+9376470 None:intergenic
TGAACTGGCAGATGGGGAGG+TGG 0.525868 1_1:-9375614 Msa0006470:CDS
GAAAATTGTGGACATAAGAG+AGG 0.527462 1_1:-9373487 Msa0006470:CDS
ACACGAGTTAAGTAATATGA+AGG 0.529678 1_1:-9375712 Msa0006470:CDS
TGGATTGGTGAACTGGCAGA+TGG 0.530194 1_1:-9375622 Msa0006470:CDS
GTACCAACACTACAGATTGA+AGG 0.530230 1_1:-9372857 Msa0006470:three_prime_UTR
GTGGCCAAATACTCTGCGTT+TGG 0.531063 1_1:-9375462 Msa0006470:CDS
ATAACTGGTTTATCAATCAA+AGG 0.531319 1_1:-9373113 Msa0006470:CDS
TCATACATTATAGGGTTACA+AGG 0.531432 1_1:-9373511 Msa0006470:intron
TGTTGTTGTTGTCGGTGTAG+TGG 0.532560 1_1:+9375919 None:intergenic
GAGGTGGCGGTGGATGGAGA+CGG 0.532603 1_1:-9375654 Msa0006470:CDS
TGGTCTGTGAAATGTTGGAT+TGG 0.536978 1_1:+9376071 None:intergenic
GAGTAGAAAGAAGGAAAGGG+AGG 0.538292 1_1:+9376473 None:intergenic
GTGTTAGAGAACAACGTACT+AGG 0.538828 1_1:+9376180 None:intergenic
CCATTGACCGGTGGTTTGCA+CGG 0.539128 1_1:+9375806 None:intergenic
ATCGACGGTGATGGACTTGG+GGG 0.539928 1_1:-9375684 Msa0006470:CDS
GGAAGATGAAGAAGAAGGGG+AGG 0.540333 1_1:+9376440 None:intergenic
AAGAGCAGCATTCAAAGTAA+AGG 0.541009 1_1:-9372661 Msa0006470:three_prime_UTR
CGACCGTGCAAGCCATTGAC+CGG 0.542113 1_1:+9375794 None:intergenic
GGAGGAAGATAAAGCAAGGT+TGG 0.544598 1_1:-9373169 Msa0006470:CDS
GATTGGTGAACTGGCAGATG+GGG 0.546447 1_1:-9375620 Msa0006470:CDS
TGGTGAACTGGCAGATGGGG+AGG 0.547939 1_1:-9375617 Msa0006470:CDS
ACAATGGAAGATGAAGAAGA+AGG 0.547992 1_1:+9376435 None:intergenic
TACTGTTGGATATGGCCACT+TGG 0.548498 1_1:+9373386 None:intergenic
AGAAGGGACGTTGTTGTGAT+CGG 0.549064 1_1:+9376498 None:intergenic
ATCCTCGGTAACTGATCCAC+CGG 0.551656 1_1:+9375516 None:intergenic
GTGTGATGATGTGTATAAAG+TGG 0.558161 1_1:+9376543 None:intergenic
GGATTGGTGAACTGGCAGAT+GGG 0.560565 1_1:-9375621 Msa0006470:CDS
TCCGACACCGTGCAAACCAC+CGG 0.562776 1_1:-9375813 Msa0006470:CDS
AAGGATAACATCGACGGTGA+TGG 0.564146 1_1:-9375693 Msa0006470:CDS
ACATGTTCGTGTCCATGCAA+TGG 0.568400 1_1:-9374456 Msa0006470:CDS
ATGTTTGTATAATATTGAGG+GGG 0.568452 1_1:-9372329 Msa0006470:three_prime_UTR
GTGGCGGTGGATGGAGACGG+AGG 0.571035 1_1:-9375651 Msa0006470:CDS
TTATACCAACAGAGAATGAA+AGG 0.571808 1_1:-9373660 Msa0006470:CDS
GGTTTATCAATCAAAGGAAG+AGG 0.572061 1_1:-9373107 Msa0006470:CDS
AATGGAAGATGAAGAAGAAG+GGG 0.572890 1_1:+9376437 None:intergenic
GCAGATGGGGAGGTGGAAGG+CGG 0.573467 1_1:-9375607 Msa0006470:CDS
TTCAGGAGGAAGATAAAGCA+AGG 0.577710 1_1:-9373173 Msa0006470:intron
TTTCACCTGGAGAAGGTACA+GGG 0.580246 1_1:-9373783 Msa0006470:CDS
ACCATGGTATTGAACTTGAA+GGG 0.581310 1_1:+9376221 None:intergenic
TATGTTTGTATAATATTGAG+GGG 0.583085 1_1:-9372330 Msa0006470:three_prime_UTR
AACGTTACCAACGACACTGA+CGG 0.584519 1_1:-9375873 Msa0006470:CDS
ACGCCTTCAATCTGTAGTGT+TGG 0.589859 1_1:+9372854 None:intergenic
GAAGATGAAGAAGAAGGGGA+GGG 0.590274 1_1:+9376441 None:intergenic
AGGACAGAAGTTGTGTCACC+AGG 0.595424 1_1:+9373432 None:intergenic
TGTTTGTATAATATTGAGGG+GGG 0.595517 1_1:-9372328 Msa0006470:three_prime_UTR
GCATGAACAGGAGTTTCACC+TGG 0.596871 1_1:-9373796 Msa0006470:intron
ACAGTTGTTGTCGGCACATG+TGG 0.599267 1_1:-9375559 Msa0006470:CDS
GAGAAAATATGACAAGACAA+TGG 0.604823 1_1:+9376419 None:intergenic
AGTAGAAAGAAGGAAAGGGA+GGG 0.605937 1_1:+9376474 None:intergenic
CCGTGCAAGCCATTGACCGG+TGG 0.606475 1_1:+9375797 None:intergenic
GTTGTTGAGCCAGTTAGGTG+TGG 0.606546 1_1:+9375956 None:intergenic
GCTAACTGTGCATCAATCCT+CGG 0.611908 1_1:+9375501 None:intergenic
TAGTGAAGGTTATAGTAAAG+GGG 0.612085 1_1:-9372897 Msa0006470:three_prime_UTR
GTGTCAAAACTAATCCCTGA+AGG 0.612852 1_1:-9372461 Msa0006470:three_prime_UTR
TTTGCTCTTCAAGACAGTAG+AGG 0.614890 1_1:+9373062 None:intergenic
AAACAAAGAAGTCTGTTGAG+AGG 0.615706 1_1:-9372686 Msa0006470:three_prime_UTR
GGGTTACAAGGAGAAAATTG+TGG 0.616009 1_1:-9373499 Msa0006470:CDS
GTGTTTGAGGATAGCAACGC+CGG 0.619072 1_1:-9375535 Msa0006470:CDS
CGGAAAATAAATCCAAACAA+AGG 0.619091 1_1:+9376518 None:intergenic
GGTATTTGGAATGTATGTAA+AGG 0.619348 1_1:-9372225 Msa0006470:three_prime_UTR
GTGAGTCTGGTAATATAGAA+CGG 0.620437 1_1:+9376027 None:intergenic
GCTATTATAGGTTTATACCA+TGG 0.623092 1_1:+9376205 None:intergenic
GAAATGAAGATAAAATATTG+GGG 0.623884 1_1:+9376368 None:intergenic
ACCAACGACACTGACGGTAA+CGG 0.624558 1_1:-9375867 Msa0006470:CDS
GTTAGCACAGTCACAGAATG+TGG 0.631347 1_1:-9375484 Msa0006470:CDS
ACAGGAGTTTCACCTGGAGA+AGG 0.631882 1_1:-9373790 Msa0006470:intron
TTACTTCACCGTGTTGACGG+TGG 0.635014 1_1:+9375766 None:intergenic
GACAACAACTGTTCATACAA+CGG 0.638324 1_1:+9375570 None:intergenic
ACCCTTCAAGTTCAATACCA+TGG 0.643322 1_1:-9376222 Msa0006470:five_prime_UTR
GATGGCGGTGCGGATAACAT+GGG 0.643909 1_1:-9373694 Msa0006470:CDS
AGTGACGCAAATCTGTTCGA+TGG 0.645362 1_1:-9373724 Msa0006470:CDS
TTTGAGGATAGCAACGCCGG+TGG 0.647198 1_1:-9375532 Msa0006470:CDS
GTAATAACCACTAATCTTAG+GGG 0.651167 1_1:+9372985 None:intergenic
TGACGATGATACGTAGACAC+TGG 0.656338 1_1:+9372750 None:intergenic
TCGATTCTCCACCGTCAACA+CGG 0.669076 1_1:-9375774 Msa0006470:CDS
AATATGAAGGATAACATCGA+CGG 0.669534 1_1:-9375699 Msa0006470:CDS
CGCCGGTGGATCAGTTACCG+AGG 0.669945 1_1:-9375518 Msa0006470:CDS
AGTAATCGACAACGTTACCA+TGG 0.672069 1_1:-9375748 Msa0006470:CDS
TCGACGGTGATGGACTTGGG+GGG 0.674235 1_1:-9375683 Msa0006470:CDS
AGCACAGTCACAGAATGTGG+TGG 0.693414 1_1:-9375481 Msa0006470:CDS
TGTCGGTGTAGTGGGTACGA+AGG 0.706118 1_1:+9375928 None:intergenic
GGTGGCAATCACATTCCAAG+TGG 0.712840 1_1:-9373401 Msa0006470:CDS
TTCACCTGGAGAAGGTACAG+GGG 0.738308 1_1:-9373782 Msa0006470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGTTTATTTTTTTTTTTT+TGG + chr1_1:9372375-9372394 None:intergenic 10.0%
!! TAATGTATGATTAAAATAAA+AGG + chr1_1:9375242-9375261 None:intergenic 10.0%
!!! TTATTTTAATCATACATTAT+AGG - chr1_1:9375243-9375262 Msa0006470:intron 10.0%
!!! TATTTTAATCATACATTATA+GGG - chr1_1:9375244-9375263 Msa0006470:intron 10.0%
!! TTAAGCAAAAATATAAATAA+CGG + chr1_1:9375551-9375570 None:intergenic 10.0%
!! ATTAGTATAATATAATCATA+AGG + chr1_1:9376497-9376516 None:intergenic 10.0%
!! AAATTAGTAATTAATCCAAA+AGG + chr1_1:9373509-9373528 None:intergenic 15.0%
!!! AAACTAGTACTTTTATATTT+AGG - chr1_1:9375738-9375757 Msa0006470:CDS 15.0%
!!! AACTAGTACTTTTATATTTA+GGG - chr1_1:9375739-9375758 Msa0006470:CDS 15.0%
!! TTTATGTTTGTATAATATTG+AGG - chr1_1:9376431-9376450 Msa0006470:five_prime_UTR 15.0%
!! TTATGTTTGTATAATATTGA+GGG - chr1_1:9376432-9376451 Msa0006470:five_prime_UTR 15.0%
!! GAAATGAAGATAAAATATTG+GGG + chr1_1:9372398-9372417 None:intergenic 20.0%
!! GGAAATGAAGATAAAATATT+GGG + chr1_1:9372399-9372418 None:intergenic 20.0%
!! AGGAAATGAAGATAAAATAT+TGG + chr1_1:9372400-9372419 None:intergenic 20.0%
!!! TGTGATGTTTTTTTATTTGT+GGG + chr1_1:9372426-9372445 None:intergenic 20.0%
!!! TTGTGATGTTTTTTTATTTG+TGG + chr1_1:9372427-9372446 None:intergenic 20.0%
!!! GTTTCTTTTGTTAAGTTTTA+TGG - chr1_1:9372637-9372656 Msa0006470:three_prime_UTR 20.0%
!! AAAAAGAATATACCATGAAA+TGG + chr1_1:9373354-9373373 None:intergenic 20.0%
!! AAAAAGAACAATGAGATAAA+TGG + chr1_1:9373411-9373430 None:intergenic 20.0%
!!! AATAACAATTTTTCTGTTTG+TGG - chr1_1:9373476-9373495 Msa0006470:CDS 20.0%
!!! CTTATTATTACAGTTGTTTT+TGG - chr1_1:9373556-9373575 Msa0006470:intron 20.0%
!!! AATTGGTTTGTATTTTATGT+TGG - chr1_1:9373608-9373627 Msa0006470:intron 20.0%
!! AGTTGAACAGAATTAAAATT+TGG - chr1_1:9373631-9373650 Msa0006470:CDS 20.0%
!!! ATTAAAATTTGGTAGTTTTG+TGG - chr1_1:9373642-9373661 Msa0006470:CDS 20.0%
!!! ATGAAAATGCAATTTTGAAT+TGG - chr1_1:9373707-9373726 Msa0006470:CDS 20.0%
!!! TTGTGATTTCAATGTATTTT+TGG - chr1_1:9373745-9373764 Msa0006470:CDS 20.0%
!! TTTGAATTTATGAGAAATCA+TGG - chr1_1:9373807-9373826 Msa0006470:intron 20.0%
!! TTGAATTTATGAGAAATCAT+GGG - chr1_1:9373808-9373827 Msa0006470:intron 20.0%
!!! CTAGATTTTATTACCAAATA+AGG - chr1_1:9374060-9374079 Msa0006470:intron 20.0%
!!! GTAAAAGAAGACATTTTTTT+TGG + chr1_1:9374387-9374406 None:intergenic 20.0%
!!! ATCATTTTTACTTGTCAAAT+AGG + chr1_1:9374932-9374951 None:intergenic 20.0%
!! GGAATAGTTATTAAAAAGAA+GGG + chr1_1:9375205-9375224 None:intergenic 20.0%
!! AACTAAAGCAAATTAATAAC+TGG - chr1_1:9375635-9375654 Msa0006470:CDS 20.0%
!! ATGTAATTTCAGTAAAGAAA+GGG - chr1_1:9376131-9376150 Msa0006470:five_prime_UTR 20.0%
!! TAATAAACATTCATCTTAAG+AGG - chr1_1:9376163-9376182 Msa0006470:five_prime_UTR 20.0%
!! TAGTATAATGCTACATAATT+AGG - chr1_1:9376332-9376351 Msa0006470:five_prime_UTR 20.0%
!! TACTATATGCTAAAACAAAT+TGG - chr1_1:9376359-9376378 Msa0006470:five_prime_UTR 20.0%
!! ACTATATGCTAAAACAAATT+GGG - chr1_1:9376360-9376379 Msa0006470:five_prime_UTR 20.0%
!! TATGTTTGTATAATATTGAG+GGG - chr1_1:9376433-9376452 Msa0006470:five_prime_UTR 20.0%
!!! GTTGTTTTTGTTCTTTAAAT+TGG - chr1_1:9376517-9376536 Msa0006470:five_prime_UTR 20.0%
!! TTGTTCTTTAAATTGGTATT+TGG - chr1_1:9376524-9376543 Msa0006470:five_prime_UTR 20.0%
! ATAAATGGCAAAGAAATTTG+AGG + chr1_1:9373396-9373415 None:intergenic 25.0%
! TTGCTTGTAACAAAAATTTG+TGG + chr1_1:9373454-9373473 None:intergenic 25.0%
!!! CAGTTGTTTTTGGATTTTTA+TGG - chr1_1:9373566-9373585 Msa0006470:intron 25.0%
! ATGGAATCATGTGATAAATA+TGG - chr1_1:9373585-9373604 Msa0006470:intron 25.0%
! TCATGTGATAAATATGGAAT+TGG - chr1_1:9373591-9373610 Msa0006470:intron 25.0%
! TGAATTTATGAGAAATCATG+GGG - chr1_1:9373809-9373828 Msa0006470:intron 25.0%
!!! ATGAGATTTTTTTTGTACAG+AGG - chr1_1:9373911-9373930 Msa0006470:intron 25.0%
!!! TGAGATTTTTTTTGTACAGA+GGG - chr1_1:9373912-9373931 Msa0006470:intron 25.0%
! GTTTATTCAAAAACTGGAAA+GGG + chr1_1:9373954-9373973 None:intergenic 25.0%
! TGTTTATTCAAAAACTGGAA+AGG + chr1_1:9373955-9373974 None:intergenic 25.0%
! AAGTGTGTTTATTCAAAAAC+TGG + chr1_1:9373960-9373979 None:intergenic 25.0%
!! TTTAAAACAGAACTAAGAGA+AGG + chr1_1:9374012-9374031 None:intergenic 25.0%
!! TTTTATTACCAAATAAGGAG+CGG - chr1_1:9374065-9374084 Msa0006470:intron 25.0%
!!! GTTAATTACATTTTAGTCAC+TGG + chr1_1:9374145-9374164 None:intergenic 25.0%
!! ATGATGGAATGAAAATAACT+TGG - chr1_1:9374448-9374467 Msa0006470:CDS 25.0%
! AAAAGTGATTACAGAAAATG+TGG + chr1_1:9374475-9374494 None:intergenic 25.0%
!! TTTAGTAATTCTGTCTGTTT+TGG - chr1_1:9374530-9374549 Msa0006470:intron 25.0%
!!! GTGTTTGAAGAAAGTATTAA+AGG - chr1_1:9374622-9374641 Msa0006470:intron 25.0%
! TCCAATCAAACCTAAAAAAT+GGG + chr1_1:9374868-9374887 None:intergenic 25.0%
! GGGAATAGTTATTAAAAAGA+AGG + chr1_1:9375206-9375225 None:intergenic 25.0%
! TATATAGTTAAACGTACTGT+TGG + chr1_1:9375394-9375413 None:intergenic 25.0%
!! TAATGTATTATGTGCTTTTC+AGG - chr1_1:9375573-9375592 Msa0006470:CDS 25.0%
!! ATAACTGGTTTATCAATCAA+AGG - chr1_1:9375650-9375669 Msa0006470:CDS 25.0%
! TGTAATAACCACTAATCTTA+GGG + chr1_1:9375782-9375801 None:intergenic 25.0%
! TAAAAATAACAAAGCAAGAG+AGG + chr1_1:9375838-9375857 None:intergenic 25.0%
!!! TCTCTTGCTTTGTTATTTTT+AGG - chr1_1:9375837-9375856 Msa0006470:CDS 25.0%
!!! CTCTTGCTTTGTTATTTTTA+GGG - chr1_1:9375838-9375857 Msa0006470:CDS 25.0%
! TTAGTGAAGGTTATAGTAAA+GGG - chr1_1:9375865-9375884 Msa0006470:CDS 25.0%
! GATGTAATTTCAGTAAAGAA+AGG - chr1_1:9376130-9376149 Msa0006470:five_prime_UTR 25.0%
!!! TCTAGTGTTATTAGTCTTTT+TGG - chr1_1:9376186-9376205 Msa0006470:five_prime_UTR 25.0%
! ATGTTTGTATAATATTGAGG+GGG - chr1_1:9376434-9376453 Msa0006470:five_prime_UTR 25.0%
CGGAAAATAAATCCAAACAA+AGG + chr1_1:9372248-9372267 None:intergenic 30.0%
GAGAAAATATGACAAGACAA+TGG + chr1_1:9372347-9372366 None:intergenic 30.0%
!!! GTTTTTTTATTTGTGGGACT+AGG + chr1_1:9372420-9372439 None:intergenic 30.0%
!! TGTGTTTGTGATGTTTTGTT+TGG + chr1_1:9372478-9372497 None:intergenic 30.0%
GCTATTATAGGTTTATACCA+TGG + chr1_1:9372561-9372580 None:intergenic 30.0%
! ATGAGTTATTGTTGTTGGTT+TGG + chr1_1:9372715-9372734 None:intergenic 30.0%
! GTTATTGTTGTTGTTGTTGT+CGG + chr1_1:9372855-9372874 None:intergenic 30.0%
ACACGAGTTAAGTAATATGA+AGG - chr1_1:9373051-9373070 Msa0006470:CDS 30.0%
AATATGAAGGATAACATCGA+CGG - chr1_1:9373064-9373083 Msa0006470:CDS 30.0%
!!! AATTTGGTAGTTTTGTGGTA+TGG - chr1_1:9373647-9373666 Msa0006470:CDS 30.0%
! AAATGCAATTTTGAATTGGC+TGG - chr1_1:9373711-9373730 Msa0006470:CDS 30.0%
!!! AATTTTGAATTGGCTGGTTT+TGG - chr1_1:9373717-9373736 Msa0006470:CDS 30.0%
!!! ATTTTGAATTGGCTGGTTTT+GGG - chr1_1:9373718-9373737 Msa0006470:CDS 30.0%
GAATTTATGAGAAATCATGG+GGG - chr1_1:9373810-9373829 Msa0006470:intron 30.0%
!!! GAGATTTTTTTTGTACAGAG+GGG - chr1_1:9373913-9373932 Msa0006470:intron 30.0%
!!! GGTGTACTTTTGATTTAGAA+TGG - chr1_1:9374086-9374105 Msa0006470:intron 30.0%
TTGTTGCAATTGTTCTTTGA+AGG + chr1_1:9374288-9374307 None:intergenic 30.0%
!!! CATTTTTTTTGGTACCTGTT+AGG + chr1_1:9374376-9374395 None:intergenic 30.0%
!! TAAAGCTTTGTTGCATATGA+TGG - chr1_1:9374432-9374451 Msa0006470:CDS 30.0%
TAATCAGGGGAACATAATAT+AGG + chr1_1:9374500-9374519 None:intergenic 30.0%
TAAAAGCAGCAACATAATCA+GGG + chr1_1:9374514-9374533 None:intergenic 30.0%
TGTTAGCTAATTGAACAGTT+GGG + chr1_1:9374698-9374717 None:intergenic 30.0%
ATGTTAGCTAATTGAACAGT+TGG + chr1_1:9374699-9374718 None:intergenic 30.0%
! TGACCTACTTTGAAAATCTT+AGG - chr1_1:9374813-9374832 Msa0006470:intron 30.0%
GTCCAATCAAACCTAAAAAA+TGG + chr1_1:9374869-9374888 None:intergenic 30.0%
! GTTTGATTGGACCTTTTTAA+AGG - chr1_1:9374877-9374896 Msa0006470:intron 30.0%
AAATATACTTCAGCCTTCAT+CGG + chr1_1:9374904-9374923 None:intergenic 30.0%
TTATACCAACAGAGAATGAA+AGG - chr1_1:9375103-9375122 Msa0006470:intron 30.0%
AGCATGAATTGAAACATGTA+AGG - chr1_1:9375157-9375176 Msa0006470:intron 30.0%
GCATGAATTGAAACATGTAA+GGG - chr1_1:9375158-9375177 Msa0006470:intron 30.0%
TAAAAGGAGATGAATCATGT+GGG + chr1_1:9375226-9375245 None:intergenic 30.0%
ATAAAAGGAGATGAATCATG+TGG + chr1_1:9375227-9375246 None:intergenic 30.0%
TCATACATTATAGGGTTACA+AGG - chr1_1:9375252-9375271 Msa0006470:intron 30.0%
GTAATAACCACTAATCTTAG+GGG + chr1_1:9375781-9375800 None:intergenic 30.0%
GTGTAATAACCACTAATCTT+AGG + chr1_1:9375783-9375802 None:intergenic 30.0%
TGTGATTTCCTTAACAAGAA+GGG + chr1_1:9375811-9375830 None:intergenic 30.0%
ATGTGATTTCCTTAACAAGA+AGG + chr1_1:9375812-9375831 None:intergenic 30.0%
CTTAGTGAAGGTTATAGTAA+AGG - chr1_1:9375864-9375883 Msa0006470:CDS 30.0%
TAGTGAAGGTTATAGTAAAG+GGG - chr1_1:9375866-9375885 Msa0006470:CDS 30.0%
ATGTAGCATTATACTAAAGC+AGG + chr1_1:9376328-9376347 None:intergenic 30.0%
TGTTTGTATAATATTGAGGG+GGG - chr1_1:9376435-9376454 Msa0006470:five_prime_UTR 30.0%
! GGTATTTGGAATGTATGTAA+AGG - chr1_1:9376538-9376557 Msa0006470:five_prime_UTR 30.0%
! GTGTGATGATGTGTATAAAG+TGG + chr1_1:9372223-9372242 None:intergenic 35.0%
ATCATCACACATCCTTTGTT+TGG - chr1_1:9372233-9372252 Msa0006470:three_prime_UTR 35.0%
TAGAATGTGGAGTAGAAAGA+AGG + chr1_1:9372302-9372321 None:intergenic 35.0%
AATGGAAGATGAAGAAGAAG+GGG + chr1_1:9372329-9372348 None:intergenic 35.0%
CAATGGAAGATGAAGAAGAA+GGG + chr1_1:9372330-9372349 None:intergenic 35.0%
ACAATGGAAGATGAAGAAGA+AGG + chr1_1:9372331-9372350 None:intergenic 35.0%
!! TTTGTTTGGTGTTGTTGGTT+TGG + chr1_1:9372464-9372483 None:intergenic 35.0%
!!! GATGTTTTGTTTGGTGTTGT+TGG + chr1_1:9372469-9372488 None:intergenic 35.0%
! ACCATGGTATTGAACTTGAA+GGG + chr1_1:9372545-9372564 None:intergenic 35.0%
! TACCATGGTATTGAACTTGA+AGG + chr1_1:9372546-9372565 None:intergenic 35.0%
ACGTACTAGGTAGCTATTAT+AGG + chr1_1:9372573-9372592 None:intergenic 35.0%
CAAACATACACACACTTGTT+TGG - chr1_1:9372615-9372634 Msa0006470:three_prime_UTR 35.0%
!!! CTTGTGAAAGATGTTGGTTT+TGG + chr1_1:9372667-9372686 None:intergenic 35.0%
GTAACTCTTGTGAAAGATGT+TGG + chr1_1:9372673-9372692 None:intergenic 35.0%
ACGGAATGAGTTATTGTTGT+TGG + chr1_1:9372720-9372739 None:intergenic 35.0%
GTGAGTCTGGTAATATAGAA+CGG + chr1_1:9372739-9372758 None:intergenic 35.0%
! TGGTTTGGAGTTGGTTATTA+GGG + chr1_1:9372790-9372809 None:intergenic 35.0%
GACAACAACTGTTCATACAA+CGG + chr1_1:9373196-9373215 None:intergenic 35.0%
GTTGTATGAACAGTTGTTGT+CGG - chr1_1:9373195-9373214 Msa0006470:intron 35.0%
CAAAGAACTTGACCATTTCA+TGG - chr1_1:9373339-9373358 Msa0006470:intron 35.0%
!!! GTTTGTGGTTTTAGTCCTTT+TGG - chr1_1:9373491-9373510 Msa0006470:CDS 35.0%
! TTTTTGGATGATTGCTCAAG+TGG - chr1_1:9373761-9373780 Msa0006470:CDS 35.0%
! TTTTGGATGATTGCTCAAGT+GGG - chr1_1:9373762-9373781 Msa0006470:CDS 35.0%
AAAAGCAGCAACATAATCAG+GGG + chr1_1:9374513-9374532 None:intergenic 35.0%
CTAAAAGCAGCAACATAATC+AGG + chr1_1:9374515-9374534 None:intergenic 35.0%
GTCTCTTGTAAGACTATACA+AGG - chr1_1:9374552-9374571 Msa0006470:intron 35.0%
GTTAGCTAATTGAACAGTTG+GGG + chr1_1:9374697-9374716 None:intergenic 35.0%
ATCTTCCAAGAATACAAGCA+GGG - chr1_1:9374751-9374770 Msa0006470:intron 35.0%
! AGGCCTAAGATTTTCAAAGT+AGG + chr1_1:9374819-9374838 None:intergenic 35.0%
ATGGGCCTATAAGAGATAAT+AGG + chr1_1:9374850-9374869 None:intergenic 35.0%
!!! CTCTTATAGGCCCATTTTTT+AGG - chr1_1:9374855-9374874 Msa0006470:intron 35.0%
!!! GCCCATTTTTTAGGTTTGAT+TGG - chr1_1:9374864-9374883 Msa0006470:intron 35.0%
CATTCTCTGTTGGTATAAGA+GGG + chr1_1:9375101-9375120 None:intergenic 35.0%
TCATTCTCTGTTGGTATAAG+AGG + chr1_1:9375102-9375121 None:intergenic 35.0%
GAAAATTGTGGACATAAGAG+AGG - chr1_1:9375276-9375295 Msa0006470:intron 35.0%
GTTAAACGTACTGTTGGATA+TGG + chr1_1:9375388-9375407 None:intergenic 35.0%
!! TGTATTATGTGCTTTTCAGG+AGG - chr1_1:9375576-9375595 Msa0006470:CDS 35.0%
GGTTTATCAATCAAAGGAAG+AGG - chr1_1:9375656-9375675 Msa0006470:CDS 35.0%
TCAATCAAAGGAAGAGGAAT+TGG - chr1_1:9375662-9375681 Msa0006470:CDS 35.0%
!! TTTTTAGGGAGACTTAGTGA+AGG - chr1_1:9375852-9375871 Msa0006470:CDS 35.0%
AAACAAAGAAGTCTGTTGAG+AGG - chr1_1:9376077-9376096 Msa0006470:CDS 35.0%
AAGAGCAGCATTCAAAGTAA+AGG - chr1_1:9376102-9376121 Msa0006470:CDS 35.0%
TACTTGCTTCAGATTAGCAT+TGG + chr1_1:9376238-9376257 None:intergenic 35.0%
! TAATCTGAAGCAAGTACAAC+AGG - chr1_1:9376242-9376261 Msa0006470:five_prime_UTR 35.0%
! TATAATATTGAGGGGGGTAT+AGG - chr1_1:9376441-9376460 Msa0006470:five_prime_UTR 35.0%
AGTAGAAAGAAGGAAAGGGA+GGG + chr1_1:9372292-9372311 None:intergenic 40.0%
GTGGAGTAGAAAGAAGGAAA+GGG + chr1_1:9372296-9372315 None:intergenic 40.0%
TGTGGAGTAGAAAGAAGGAA+AGG + chr1_1:9372297-9372316 None:intergenic 40.0%
!! TTGGTGTTGTTGGTTTGGTT+GGG + chr1_1:9372459-9372478 None:intergenic 40.0%
!! TTTGGTGTTGTTGGTTTGGT+TGG + chr1_1:9372460-9372479 None:intergenic 40.0%
! ACCCTTCAAGTTCAATACCA+TGG - chr1_1:9372541-9372560 Msa0006470:three_prime_UTR 40.0%
GTGTTAGAGAACAACGTACT+AGG + chr1_1:9372586-9372605 None:intergenic 40.0%
TGGTCTGTGAAATGTTGGAT+TGG + chr1_1:9372695-9372714 None:intergenic 40.0%
!! TGGTTTGGTCTGTGAAATGT+TGG + chr1_1:9372700-9372719 None:intergenic 40.0%
! TTGGAGTTGGTTATTAGGGT+CGG + chr1_1:9372786-9372805 None:intergenic 40.0%
! GTGGTTTGGAGTTGGTTATT+AGG + chr1_1:9372791-9372810 None:intergenic 40.0%
AGTAATCGACAACGTTACCA+TGG - chr1_1:9373015-9373034 Msa0006470:three_prime_UTR 40.0%
TAACTCGTGTTCTACTTCTC+CGG + chr1_1:9373041-9373060 None:intergenic 40.0%
GAATGGATACTTGATGTGCA+GGG - chr1_1:9373784-9373803 Msa0006470:CDS 40.0%
TTTATGAGAAATCATGGGGG+TGG - chr1_1:9373813-9373832 Msa0006470:intron 40.0%
AAAGTACACCGCTCCTTATT+TGG + chr1_1:9374076-9374095 None:intergenic 40.0%
CAATCCTTACAAAGCCTAAC+AGG - chr1_1:9374359-9374378 Msa0006470:intron 40.0%
TTGCAAAGTTGCAATGCATG+TGG + chr1_1:9374578-9374597 None:intergenic 40.0%
CATCTTCCAAGAATACAAGC+AGG - chr1_1:9374750-9374769 Msa0006470:intron 40.0%
TCTTCCAAGAATACAAGCAG+GGG - chr1_1:9374752-9374771 Msa0006470:intron 40.0%
! GCTGGCCTATTATCTCTTAT+AGG - chr1_1:9374842-9374861 Msa0006470:intron 40.0%
! CCTTCATCGGACCTTTAAAA+AGG + chr1_1:9374891-9374910 None:intergenic 40.0%
!! CCTTTTTAAAGGTCCGATGA+AGG - chr1_1:9374888-9374907 Msa0006470:intron 40.0%
!!! CTGTTCGATGGTAGTTTTGA+TGG - chr1_1:9375051-9375070 Msa0006470:intron 40.0%
!!! TTCGATGGTAGTTTTGATGG+CGG - chr1_1:9375054-9375073 Msa0006470:intron 40.0%
AGAGAATGAAAGGTCCCTAA+TGG - chr1_1:9375113-9375132 Msa0006470:intron 40.0%
TTGTCTTACACGCTCCATTA+GGG + chr1_1:9375130-9375149 None:intergenic 40.0%
GGGTTACAAGGAGAAAATTG+TGG - chr1_1:9375264-9375283 Msa0006470:intron 40.0%
TGACACAACTTCTGTCCTTA+AGG - chr1_1:9375336-9375355 Msa0006470:intron 40.0%
! CACATGGACTAATGTGCATT+GGG + chr1_1:9375498-9375517 None:intergenic 40.0%
! ACACATGGACTAATGTGCAT+TGG + chr1_1:9375499-9375518 None:intergenic 40.0%
ATGCACATTAGTCCATGTGT+TGG - chr1_1:9375499-9375518 Msa0006470:CDS 40.0%
TTCAGGAGGAAGATAAAGCA+AGG - chr1_1:9375590-9375609 Msa0006470:CDS 40.0%
TTCAAGACAGTAGAGGTTGA+AGG + chr1_1:9375697-9375716 None:intergenic 40.0%
TTTGCTCTTCAAGACAGTAG+AGG + chr1_1:9375704-9375723 None:intergenic 40.0%
TCTTGAAGAGCAAACGCAAA+AGG - chr1_1:9375710-9375729 Msa0006470:CDS 40.0%
GTACCAACACTACAGATTGA+AGG - chr1_1:9375906-9375925 Msa0006470:CDS 40.0%
GTGTCAAAACTAATCCCTGA+AGG - chr1_1:9376302-9376321 Msa0006470:five_prime_UTR 40.0%
TATACTAAAGCAGGCCTTCA+GGG + chr1_1:9376319-9376338 None:intergenic 40.0%
TTATACTAAAGCAGGCCTTC+AGG + chr1_1:9376320-9376339 None:intergenic 40.0%
AGAAGGGACGTTGTTGTGAT+CGG + chr1_1:9372268-9372287 None:intergenic 45.0%
GAGTAGAAAGAAGGAAAGGG+AGG + chr1_1:9372293-9372312 None:intergenic 45.0%
GAAGATGAAGAAGAAGGGGA+GGG + chr1_1:9372325-9372344 None:intergenic 45.0%
! ATCAGGTTTGGAGTTAGGGT+CGG + chr1_1:9372762-9372781 None:intergenic 45.0%
! CGGAATCAGGTTTGGAGTTA+GGG + chr1_1:9372766-9372785 None:intergenic 45.0%
! TCGGAATCAGGTTTGGAGTT+AGG + chr1_1:9372767-9372786 None:intergenic 45.0%
ATTAGGGTCGGAATCAGGTT+TGG + chr1_1:9372774-9372793 None:intergenic 45.0%
TGGTTATTAGGGTCGGAATC+AGG + chr1_1:9372779-9372798 None:intergenic 45.0%
! AGTTAGGTGTGGTTTGGAGT+TGG + chr1_1:9372799-9372818 None:intergenic 45.0%
AACTCCAAACCACACCTAAC+TGG - chr1_1:9372798-9372817 Msa0006470:three_prime_UTR 45.0%
ATAGCGTTGTTGAGCCAGTT+AGG + chr1_1:9372815-9372834 None:intergenic 45.0%
! GTTGTTGTTGTCGGTGTAGT+GGG + chr1_1:9372846-9372865 None:intergenic 45.0%
! TGTTGTTGTTGTCGGTGTAG+TGG + chr1_1:9372847-9372866 None:intergenic 45.0%
!! AGTGTCGTTGGTAACGTTGT+TGG + chr1_1:9372888-9372907 None:intergenic 45.0%
AACGTTACCAACGACACTGA+CGG - chr1_1:9372890-9372909 Msa0006470:three_prime_UTR 45.0%
CGATTACTTCACCGTGTTGA+CGG + chr1_1:9373003-9373022 None:intergenic 45.0%
AAGGATAACATCGACGGTGA+TGG - chr1_1:9373070-9373089 Msa0006470:CDS 45.0%
GCTAACTGTGCATCAATCCT+CGG + chr1_1:9373265-9373284 None:intergenic 45.0%
GTTAGCACAGTCACAGAATG+TGG - chr1_1:9373279-9373298 Msa0006470:intron 45.0%
! ACCACCAAACGCAGAGTATT+TGG + chr1_1:9373308-9373327 None:intergenic 45.0%
! AAATACTCTGCGTTTGGTGG+TGG - chr1_1:9373307-9373326 Msa0006470:intron 45.0%
GATGATTGCTCAAGTGGGAA+TGG - chr1_1:9373767-9373786 Msa0006470:CDS 45.0%
GGAATGGATACTTGATGTGC+AGG - chr1_1:9373783-9373802 Msa0006470:CDS 45.0%
GTGTGACTGCAACATCAAGA+AGG + chr1_1:9374246-9374265 None:intergenic 45.0%
ACATGTTCGTGTCCATGCAA+TGG - chr1_1:9374307-9374326 Msa0006470:intron 45.0%
CCATTACAGCTTCCATTGCA+TGG + chr1_1:9374322-9374341 None:intergenic 45.0%
CCATGCAATGGAAGCTGTAA+TGG - chr1_1:9374319-9374338 Msa0006470:intron 45.0%
! TGGAAGCTGTAATGGCTTGT+TGG - chr1_1:9374327-9374346 Msa0006470:intron 45.0%
!! GGAAGCTGTAATGGCTTGTT+GGG - chr1_1:9374328-9374347 Msa0006470:intron 45.0%
! GGTACCTGTTAGGCTTTGTA+AGG + chr1_1:9374366-9374385 None:intergenic 45.0%
! AGACTAGACAAGGCTTTGTG+AGG - chr1_1:9374782-9374801 Msa0006470:intron 45.0%
GAAAATCTTAGGCCTGAAGC+TGG - chr1_1:9374824-9374843 Msa0006470:intron 45.0%
AGAGATAATAGGCCAGCTTC+AGG + chr1_1:9374839-9374858 None:intergenic 45.0%
TTTCTCATCGCTGCATGAAC+AGG - chr1_1:9374955-9374974 Msa0006470:intron 45.0%
! TTTCACCTGGAGAAGGTACA+GGG - chr1_1:9374980-9374999 Msa0006470:intron 45.0%
GTCTGACGATGAAGATGAAC+AGG - chr1_1:9375011-9375030 Msa0006470:intron 45.0%
AGTGACGCAAATCTGTTCGA+TGG - chr1_1:9375039-9375058 Msa0006470:intron 45.0%
AGGGACCTTTCATTCTCTGT+TGG + chr1_1:9375111-9375130 None:intergenic 45.0%
CTTGTCTTACACGCTCCATT+AGG + chr1_1:9375131-9375150 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG - chr1_1:9375301-9375320 Msa0006470:intron 45.0%
! TTTTACGCAAGAGACGAGCT+GGG - chr1_1:9375302-9375321 Msa0006470:intron 45.0%
CAACTTCTGTCCTTAAGGCT+TGG - chr1_1:9375341-9375360 Msa0006470:intron 45.0%
TACTGTTGGATATGGCCACT+TGG + chr1_1:9375380-9375399 None:intergenic 45.0%
CTTTCTGTGATGCCAACACA+TGG + chr1_1:9375514-9375533 None:intergenic 45.0%
GGAGGAAGATAAAGCAAGGT+TGG - chr1_1:9375594-9375613 Msa0006470:CDS 45.0%
!! AGATAAAGCAAGGTTGGTGC+AGG - chr1_1:9375600-9375619 Msa0006470:CDS 45.0%
CCACTAATCTTAGGGGAGTT+TGG + chr1_1:9375774-9375793 None:intergenic 45.0%
CCAAACTCCCCTAAGATTAG+TGG - chr1_1:9375771-9375790 Msa0006470:CDS 45.0%
ACGCCTTCAATCTGTAGTGT+TGG + chr1_1:9375912-9375931 None:intergenic 45.0%
TGACGATGATACGTAGACAC+TGG + chr1_1:9376016-9376035 None:intergenic 45.0%
GTGTCTGTGTCAATGCTTCA+TGG - chr1_1:9376041-9376060 Msa0006470:CDS 45.0%
GAAGGAAAGGGAGGGAAGAA+GGG + chr1_1:9372284-9372303 None:intergenic 50.0%
AGAAGGAAAGGGAGGGAAGA+AGG + chr1_1:9372285-9372304 None:intergenic 50.0%
AAGAAGGGGAGGGTAGAATG+TGG + chr1_1:9372315-9372334 None:intergenic 50.0%
GGAAGATGAAGAAGAAGGGG+AGG + chr1_1:9372326-9372345 None:intergenic 50.0%
! TCAGGTTTGGAGTTAGGGTC+GGG + chr1_1:9372761-9372780 None:intergenic 50.0%
TGAGCCAGTTAGGTGTGGTT+TGG + chr1_1:9372805-9372824 None:intergenic 50.0%
GTTGTTGAGCCAGTTAGGTG+TGG + chr1_1:9372810-9372829 None:intergenic 50.0%
ACCAACGACACTGACGGTAA+CGG - chr1_1:9372896-9372915 Msa0006470:three_prime_UTR 50.0%
!! CGGTGTCGGAAGTTTGTTGA+AGG + chr1_1:9372940-9372959 None:intergenic 50.0%
TCGATTCTCCACCGTCAACA+CGG - chr1_1:9372989-9373008 Msa0006470:three_prime_UTR 50.0%
! TTACTTCACCGTGTTGACGG+TGG + chr1_1:9373000-9373019 None:intergenic 50.0%
ATCGACAACGTTACCATGGC+CGG - chr1_1:9373019-9373038 Msa0006470:three_prime_UTR 50.0%
!! AACATCGACGGTGATGGACT+TGG - chr1_1:9373076-9373095 Msa0006470:CDS 50.0%
!! ACATCGACGGTGATGGACTT+GGG - chr1_1:9373077-9373096 Msa0006470:CDS 50.0%
!! TGGATTGGTGAACTGGCAGA+TGG - chr1_1:9373141-9373160 Msa0006470:CDS 50.0%
! GGATTGGTGAACTGGCAGAT+GGG - chr1_1:9373142-9373161 Msa0006470:CDS 50.0%
GATTGGTGAACTGGCAGATG+GGG - chr1_1:9373143-9373162 Msa0006470:CDS 50.0%
ACAGTTGTTGTCGGCACATG+TGG - chr1_1:9373204-9373223 Msa0006470:intron 50.0%
GTGTTTGAGGATAGCAACGC+CGG - chr1_1:9373228-9373247 Msa0006470:intron 50.0%
ATCCTCGGTAACTGATCCAC+CGG + chr1_1:9373250-9373269 None:intergenic 50.0%
AGCACAGTCACAGAATGTGG+TGG - chr1_1:9373282-9373301 Msa0006470:intron 50.0%
GTGGCCAAATACTCTGCGTT+TGG - chr1_1:9373301-9373320 Msa0006470:intron 50.0%
GCCAAATACTCTGCGTTTGG+TGG - chr1_1:9373304-9373323 Msa0006470:intron 50.0%
ATGAGAAATCATGGGGGTGG+AGG - chr1_1:9373816-9373835 Msa0006470:intron 50.0%
TGAGAAATCATGGGGGTGGA+GGG - chr1_1:9373817-9373836 Msa0006470:intron 50.0%
GGGCAGGATTAGACTAGACA+AGG - chr1_1:9374772-9374791 Msa0006470:intron 50.0%
GCATGAACAGGAGTTTCACC+TGG - chr1_1:9374967-9374986 Msa0006470:intron 50.0%
ACAGGAGTTTCACCTGGAGA+AGG - chr1_1:9374973-9374992 Msa0006470:intron 50.0%
! GTTTCACCTGGAGAAGGTAC+AGG - chr1_1:9374979-9374998 Msa0006470:intron 50.0%
! TTCACCTGGAGAAGGTACAG+GGG - chr1_1:9374981-9375000 Msa0006470:intron 50.0%
!!! TGGTAGTTTTGATGGCGGTG+CGG - chr1_1:9375059-9375078 Msa0006470:intron 50.0%
GGTGCGGATAACATGGGATT+TGG - chr1_1:9375075-9375094 Msa0006470:intron 50.0%
AGGACAGAAGTTGTGTCACC+AGG + chr1_1:9375334-9375353 None:intergenic 50.0%
CTTCTGTCCTTAAGGCTTGG+TGG - chr1_1:9375344-9375363 Msa0006470:intron 50.0%
GTGATTGCCACCAAGCCTTA+AGG + chr1_1:9375354-9375373 None:intergenic 50.0%
GGTGGCAATCACATTCCAAG+TGG - chr1_1:9375362-9375381 Msa0006470:intron 50.0%
CACTGACGCCCTTCTTGTTA+AGG - chr1_1:9375800-9375819 Msa0006470:CDS 50.0%
!! TGTCGGTGTAGTGGGTACGA+AGG + chr1_1:9372838-9372857 None:intergenic 55.0%
TCCGTTACCGTCAGTGTCGT+TGG + chr1_1:9372900-9372919 None:intergenic 55.0%
! CCATTGACCGGTGGTTTGCA+CGG + chr1_1:9372960-9372979 None:intergenic 55.0%
GTGTTCTACTTCTCCGGCCA+TGG + chr1_1:9373035-9373054 None:intergenic 55.0%
!! CATCGACGGTGATGGACTTG+GGG - chr1_1:9373078-9373097 Msa0006470:CDS 55.0%
!! ATCGACGGTGATGGACTTGG+GGG - chr1_1:9373079-9373098 Msa0006470:CDS 55.0%
!! GAGGAGCTGGATTGGTGAAC+TGG - chr1_1:9373134-9373153 Msa0006470:CDS 55.0%
GAGGTGGAAGGCGGAGATAA+TGG - chr1_1:9373165-9373184 Msa0006470:CDS 55.0%
TTTGAGGATAGCAACGCCGG+TGG - chr1_1:9373231-9373250 Msa0006470:intron 55.0%
CCTGCCCCTGCTTGTATTCT+TGG + chr1_1:9374759-9374778 None:intergenic 55.0%
CCAAGAATACAAGCAGGGGC+AGG - chr1_1:9374756-9374775 Msa0006470:intron 55.0%
!! TGATGGCGGTGCGGATAACA+TGG - chr1_1:9375068-9375087 Msa0006470:intron 55.0%
! GATGGCGGTGCGGATAACAT+GGG - chr1_1:9375069-9375088 Msa0006470:intron 55.0%
AGACGAGCTGGGAAACTTCC+TGG - chr1_1:9375313-9375332 Msa0006470:intron 55.0%
!! GCAAGGTTGGTGCAGGAAAC+TGG - chr1_1:9375607-9375626 Msa0006470:CDS 55.0%
GAGTTAGGGTCGGGTGAGTC+TGG + chr1_1:9372752-9372771 None:intergenic 60.0%
TCCGACACCGTGCAAACCAC+CGG - chr1_1:9372950-9372969 Msa0006470:three_prime_UTR 60.0%
! ACCGGTGGTTTGCACGGTGT+CGG + chr1_1:9372954-9372973 None:intergenic 60.0%
CCGTGCAAACCACCGGTCAA+TGG - chr1_1:9372957-9372976 Msa0006470:three_prime_UTR 60.0%
! CCACCGGTCAATGGCTTGCA+CGG - chr1_1:9372966-9372985 Msa0006470:three_prime_UTR 60.0%
CGACCGTGCAAGCCATTGAC+CGG + chr1_1:9372972-9372991 None:intergenic 60.0%
!! TCGACGGTGATGGACTTGGG+GGG - chr1_1:9373080-9373099 Msa0006470:CDS 60.0%
TGGACTTGGGGGGAAGAGTG+AGG - chr1_1:9373090-9373109 Msa0006470:CDS 60.0%
ACTTGGGGGGAAGAGTGAGG+TGG - chr1_1:9373093-9373112 Msa0006470:CDS 60.0%
! AAGAGTGAGGTGGCGGTGGA+TGG - chr1_1:9373103-9373122 Msa0006470:CDS 60.0%
AGACGGAGGAGGAGCTGGAT+TGG - chr1_1:9373126-9373145 Msa0006470:CDS 60.0%
TGGTGAACTGGCAGATGGGG+AGG - chr1_1:9373146-9373165 Msa0006470:CDS 60.0%
TGAACTGGCAGATGGGGAGG+TGG - chr1_1:9373149-9373168 Msa0006470:CDS 60.0%
CGGCACATGTGGCGTGTTTG+AGG - chr1_1:9373215-9373234 Msa0006470:intron 60.0%
GTTGCCCCTGTACCTTCTCC+AGG + chr1_1:9374988-9375007 None:intergenic 60.0%
CCGTGCAAGCCATTGACCGG+TGG + chr1_1:9372969-9372988 None:intergenic 65.0%
TGGGGGGAAGAGTGAGGTGG+CGG - chr1_1:9373096-9373115 Msa0006470:CDS 65.0%
! GAGGTGGCGGTGGATGGAGA+CGG - chr1_1:9373109-9373128 Msa0006470:CDS 65.0%
GATGGAGACGGAGGAGGAGC+TGG - chr1_1:9373121-9373140 Msa0006470:CDS 65.0%
CTGGCAGATGGGGAGGTGGA+AGG - chr1_1:9373153-9373172 Msa0006470:CDS 65.0%
GCAGATGGGGAGGTGGAAGG+CGG - chr1_1:9373156-9373175 Msa0006470:CDS 65.0%
CGCCGGTGGATCAGTTACCG+AGG - chr1_1:9373245-9373264 Msa0006470:intron 65.0%
! GGGGAAGAGTGAGGTGGCGG+TGG - chr1_1:9373099-9373118 Msa0006470:CDS 70.0%
GTGGCGGTGGATGGAGACGG+AGG - chr1_1:9373112-9373131 Msa0006470:CDS 70.0%
GCGGTGGATGGAGACGGAGG+AGG - chr1_1:9373115-9373134 Msa0006470:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9372208 9376577 9372208 ID=Msa0006470;Name=Msa0006470
chr1_1 mRNA 9372208 9376577 9372208 ID=Msa0006470-mRNA-1;Parent=Msa0006470;Name=Msa0006470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=448|1|1|1|1|1|5|833|434
chr1_1 exon 9372208 9373190 9372208 ID=Msa0006470-mRNA-1:exon:3314;Parent=Msa0006470-mRNA-1
chr1_1 exon 9373389 9373520 9373389 ID=Msa0006470-mRNA-1:exon:3313;Parent=Msa0006470-mRNA-1
chr1_1 exon 9373612 9373808 9373612 ID=Msa0006470-mRNA-1:exon:3312;Parent=Msa0006470-mRNA-1
chr1_1 exon 9374405 9374525 9374405 ID=Msa0006470-mRNA-1:exon:3311;Parent=Msa0006470-mRNA-1
chr1_1 exon 9375425 9376577 9375425 ID=Msa0006470-mRNA-1:exon:3310;Parent=Msa0006470-mRNA-1
chr1_1 five_prime_UTR 9376130 9376577 9376130 ID=Msa0006470-mRNA-1:five_prime_utr;Parent=Msa0006470-mRNA-1
chr1_1 CDS 9375425 9376129 9375425 ID=Msa0006470-mRNA-1:cds;Parent=Msa0006470-mRNA-1
chr1_1 CDS 9374405 9374525 9374405 ID=Msa0006470-mRNA-1:cds;Parent=Msa0006470-mRNA-1
chr1_1 CDS 9373612 9373808 9373612 ID=Msa0006470-mRNA-1:cds;Parent=Msa0006470-mRNA-1
chr1_1 CDS 9373389 9373520 9373389 ID=Msa0006470-mRNA-1:cds;Parent=Msa0006470-mRNA-1
chr1_1 CDS 9373041 9373190 9373041 ID=Msa0006470-mRNA-1:cds;Parent=Msa0006470-mRNA-1
chr1_1 three_prime_UTR 9372208 9373040 9372208 ID=Msa0006470-mRNA-1:three_prime_utr;Parent=Msa0006470-mRNA-1
Gene Sequence

>Msa0006470

ATGGCTTACCAAAACCAACATCTTTCACAAGAGTTACCAATCCAACATTTCACAGACCAAACCAACAACAATAACTCATTCCGTTCTATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAATAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCTATCCTTCGTACCCACTACACCGACAACAACAACAACAATAACAACGACGTTACCAACAACGTTACCAACGACACTGACGGTAACGGAGCTTCTAATTTTCTAAACCTTCAACAAACTTCCGACACCGTGCAAACCACCGGTCAATGGCTTGCACGGTCGATTCTCCACCGTCAACACGGTGAAGTAATCGACAACGTTACCATGGCCGGAGAAGTAGAACACGAGTTAAGTAATATGAAGGATAACATCGACGGTGATGGACTTGGGGGGAAGAGTGAGGTGGCGGTGGATGGAGACGGAGGAGGAGCTGGATTGGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATAATGGCACATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACGCCGGTGGATCAGTTACCGAGGATTGATGCACAGTTAGCACAGTCACAGAATGTGGTGGCCAAATACTCTGCGTTTGGTGGTGGAGTAGATGACAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGCCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGACGATGAAGATGAACAGGTAGATAGTGACGCAAATCTGTTCGATGGTAGTTTTGATGGCGGTGCGGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCCCTAATGGAGCGTGTAAGACAAGAGCTTAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACCTCTACTGTCTTGAAGAGCAAACGCAAAAGGTCTCAAAACTAG
Protein sequence

>Msa0006470

MAYQNQHLSQELPIQHFTDQTNNNNSFRSILPDSPDPNSKPDSDPNNQLQTTPNWLNNAILRTHYTDNNNNNNNDVTNNVTNDTDGNGASNFLNLQQTSDTVQTTGQWLARSILHRQHGEVIDNVTMAGEVEHELSNMKDNIDGDGLGGKSEVAVDGDGGGAGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGGGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN*