Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132530 | PNX91132.1 | 70.866 | 127 | 34 | 1 | 42 | 165 | 8 | 134 | 1.07e-55 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132530 | A0A2K3MK07 | 70.866 | 127 | 34 | 1 | 42 | 165 | 8 | 134 | 5.10e-56 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0132530 | Msa0132540 | 0.881995 | 1.509300e-70 | -8.615850e-47 |
| Msa0132530 | Msa0132550 | 0.838864 | 2.231684e-57 | -8.615850e-47 |
| Msa0132530 | Msa1223290 | 0.804522 | 2.074503e-49 | -8.615850e-47 |
| Msa0132530 | Msa1367250 | 0.806771 | 6.997666e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132530 | MtrunA17_Chr1g0157791 | 66.154 | 130 | 42 | 1 | 41 | 168 | 9 | 138 | 2.89e-55 | 185 |
| Msa0132530 | MtrunA17_Chr1g0157991 | 74.775 | 111 | 28 | 0 | 58 | 168 | 28 | 138 | 3.61e-54 | 182 |
| Msa0132530 | MtrunA17_Chr1g0158151 | 76.106 | 113 | 27 | 0 | 52 | 164 | 20 | 132 | 6.51e-53 | 178 |
| Msa0132530 | MtrunA17_Chr1g0158191 | 67.188 | 128 | 38 | 2 | 41 | 164 | 4 | 131 | 2.24e-52 | 177 |
| Msa0132530 | MtrunA17_Chr1g0157961 | 69.027 | 113 | 33 | 1 | 53 | 165 | 28 | 138 | 6.93e-52 | 167 |
| Msa0132530 | MtrunA17_Chr1g0158061 | 69.912 | 113 | 29 | 2 | 52 | 164 | 23 | 130 | 3.06e-47 | 155 |
| Msa0132530 | MtrunA17_Chr1g0158041 | 67.257 | 113 | 37 | 0 | 54 | 166 | 22 | 134 | 3.16e-47 | 163 |
| Msa0132530 | MtrunA17_Chr1g0158121 | 73.118 | 93 | 25 | 0 | 58 | 150 | 29 | 121 | 6.00e-46 | 147 |
| Msa0132530 | MtrunA17_Chr1g0157911 | 67.327 | 101 | 31 | 1 | 63 | 163 | 37 | 135 | 1.43e-40 | 144 |
| Msa0132530 | MtrunA17_Chr1g0158331 | 51.163 | 129 | 61 | 1 | 43 | 169 | 28 | 156 | 4.22e-38 | 133 |
| Msa0132530 | MtrunA17_Chr1g0157861 | 55.556 | 117 | 49 | 1 | 53 | 169 | 30 | 143 | 1.46e-36 | 133 |
| Msa0132530 | MtrunA17_Chr1g0157881 | 52.991 | 117 | 52 | 1 | 53 | 169 | 45 | 158 | 7.33e-36 | 131 |
| Msa0132530 | MtrunA17_Chr1g0158461 | 58.407 | 113 | 45 | 2 | 54 | 166 | 42 | 152 | 1.14e-35 | 126 |
| Msa0132530 | MtrunA17_Chr3g0088331 | 52.727 | 110 | 50 | 2 | 53 | 162 | 31 | 138 | 9.97e-35 | 122 |
| Msa0132530 | MtrunA17_Chr1g0158731 | 55.455 | 110 | 47 | 1 | 53 | 162 | 28 | 135 | 1.28e-34 | 123 |
| Msa0132530 | MtrunA17_Chr6g0467711 | 59.804 | 102 | 39 | 1 | 63 | 164 | 43 | 142 | 2.93e-33 | 124 |
| Msa0132530 | MtrunA17_Chr1g0158411 | 51.304 | 115 | 53 | 2 | 54 | 168 | 41 | 152 | 9.32e-33 | 122 |
| Msa0132530 | MtrunA17_Chr1g0158661 | 56.364 | 110 | 43 | 2 | 40 | 149 | 16 | 120 | 3.61e-32 | 120 |
| Msa0132530 | MtrunA17_Chr1g0158631 | 63.333 | 90 | 33 | 0 | 66 | 155 | 37 | 126 | 1.15e-30 | 116 |
| Msa0132530 | MtrunA17_Chr1g0158761 | 50.847 | 118 | 53 | 2 | 42 | 157 | 11 | 125 | 1.15e-30 | 116 |
| Msa0132530 | MtrunA17_Chr1g0158301 | 44.800 | 125 | 66 | 2 | 41 | 162 | 18 | 142 | 2.45e-25 | 101 |
| Msa0132530 | MtrunA17_Chr1g0158541 | 54.348 | 92 | 41 | 1 | 63 | 153 | 40 | 131 | 2.75e-25 | 101 |
| Msa0132530 | MtrunA17_Chr1g0160721 | 43.966 | 116 | 58 | 5 | 31 | 141 | 4 | 117 | 1.64e-17 | 79.0 |
| Msa0132530 | MtrunA17_Chr1g0160761 | 44.000 | 125 | 57 | 4 | 42 | 164 | 11 | 124 | 2.12e-17 | 78.6 |
| Msa0132530 | MtrunA17_Chr1g0160711 | 50.562 | 89 | 38 | 3 | 68 | 151 | 30 | 117 | 1.32e-16 | 76.3 |
| Msa0132530 | MtrunA17_Chr1g0160561 | 38.655 | 119 | 67 | 2 | 39 | 152 | 7 | 124 | 3.34e-16 | 75.1 |
| Msa0132530 | MtrunA17_Chr1g0160661 | 46.602 | 103 | 51 | 4 | 41 | 141 | 32 | 132 | 4.25e-16 | 74.7 |
| Msa0132530 | MtrunA17_Chr1g0160701 | 50.549 | 91 | 41 | 4 | 51 | 138 | 31 | 120 | 1.01e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTGTCTGCACAGTGTTT+TGG | 0.254899 | 1_3:-63610889 | None:intergenic |
| TGTGAAATTGTTGTAGTTGA+TGG | 0.329135 | 1_3:-63610980 | None:intergenic |
| GATTGAGACAAGAAATTGAT+AGG | 0.331850 | 1_3:-63611051 | None:intergenic |
| TGATCAGTAATTGCCTGGTA+TGG | 0.381633 | 1_3:-63611120 | None:intergenic |
| AAGCAGCACTACAACAAATA+AGG | 0.398795 | 1_3:+63610792 | Msa0132530:intron |
| TTGCTTGATTTGTGGTTGGA+TGG | 0.402298 | 1_3:-63609855 | None:intergenic |
| TGCTTGATTTGTGGTTGGAT+GGG | 0.430353 | 1_3:-63609854 | None:intergenic |
| CAAAACACTGTGCAGACAAC+AGG | 0.470377 | 1_3:+63610890 | Msa0132530:CDS |
| GATCAGTAATTGCCTGGTAT+GGG | 0.491521 | 1_3:-63611119 | None:intergenic |
| GTTTGTCCACCTTCATCTTG+TGG | 0.492043 | 1_3:+63610823 | Msa0132530:CDS |
| GAACACCAGGGTCTACCAAT+CGG | 0.502974 | 1_3:-63611005 | None:intergenic |
| TAGTGCTGCTTCAACCTTGG+TGG | 0.505393 | 1_3:-63610780 | None:intergenic |
| ATATTTGATCAGTAATTGCC+TGG | 0.508559 | 1_3:-63611125 | None:intergenic |
| GATTTGTGGTTGGATGGGGT+CGG | 0.513949 | 1_3:-63609849 | None:intergenic |
| GAGACAAGAAATTGATAGGA+GGG | 0.514952 | 1_3:-63611047 | None:intergenic |
| TGGTGGAATAAAAGAGAAAA+CGG | 0.523108 | 1_3:-63610763 | None:intergenic |
| GTGGTGGGTGAGAGTGATGC+TGG | 0.524128 | 1_3:+63610729 | Msa0132530:CDS |
| AGACAAGAAATTGATAGGAG+GGG | 0.530874 | 1_3:-63611046 | None:intergenic |
| GCTTGATTTGTGGTTGGATG+GGG | 0.534413 | 1_3:-63609853 | None:intergenic |
| TGAGACAAGAAATTGATAGG+AGG | 0.550933 | 1_3:-63611048 | None:intergenic |
| CAACAATTTCACAATCCGAT+TGG | 0.552117 | 1_3:+63610990 | Msa0132530:CDS |
| AATTGTTGTAGTTGATGGAC+TGG | 0.554290 | 1_3:-63610975 | None:intergenic |
| CACCCACCACATAGCAGCGA+AGG | 0.587131 | 1_3:-63610716 | None:intergenic |
| GTTTGTGTGAAAGATGTAGC+AGG | 0.588019 | 1_3:-63609827 | None:intergenic |
| ACAATCCGATTGGTAGACCC+TGG | 0.590513 | 1_3:+63611000 | Msa0132530:CDS |
| TAATTGCAATGACCCATACC+AGG | 0.599279 | 1_3:+63611107 | Msa0132530:CDS |
| AAAACACCTTCGCTGCTATG+TGG | 0.606178 | 1_3:+63610710 | Msa0132530:CDS |
| CACCTTCGCTGCTATGTGGT+GGG | 0.617110 | 1_3:+63610714 | Msa0132530:CDS |
| ACACCTTCGCTGCTATGTGG+TGG | 0.621752 | 1_3:+63610713 | Msa0132530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAAATATTATAAAAA+TGG | + | chr1_3:63610208-63610227 | Msa0132530:intron | 0.0% |
| !! | TTAATTAAATATTATAAAAA+TGG | + | chr1_3:63610208-63610227 | Msa0132530:intron | 0.0% |
| !!! | AAATGACAATATTTTAAAAA+TGG | + | chr1_3:63610276-63610295 | Msa0132530:intron | 10.0% |
| !! | ATAAAATTTAGAAATAAAGT+CGG | - | chr1_3:63610610-63610629 | None:intergenic | 10.0% |
| !!! | AAATGACAATATTTTAAAAA+TGG | + | chr1_3:63610276-63610295 | Msa0132530:intron | 10.0% |
| !! | ATAAAATTTAGAAATAAAGT+CGG | - | chr1_3:63610610-63610629 | None:intergenic | 10.0% |
| !!! | TTTATTTTATTTTATCCCTT+TGG | + | chr1_3:63610417-63610436 | Msa0132530:intron | 15.0% |
| !! | ATTATCATCGTAAAAATTAT+AGG | - | chr1_3:63611091-63611110 | None:intergenic | 15.0% |
| !!! | TTTATTTTATTTTATCCCTT+TGG | + | chr1_3:63610417-63610436 | Msa0132530:intron | 15.0% |
| !! | ATTATCATCGTAAAAATTAT+AGG | - | chr1_3:63611091-63611110 | None:intergenic | 15.0% |
| !! | ACTAAGTAGTATAAAACAAT+CGG | + | chr1_3:63610633-63610652 | Msa0132530:intron | 20.0% |
| !! | ACTAAGTAGTATAAAACAAT+CGG | + | chr1_3:63610633-63610652 | Msa0132530:intron | 20.0% |
| !!! | ATACTTTTTTGCTTGATTTG+TGG | - | chr1_3:63609866-63609885 | None:intergenic | 25.0% |
| ! | CTGCTTATCAAATAAACTAT+AGG | - | chr1_3:63609910-63609929 | None:intergenic | 25.0% |
| !!! | ATAAATGCGTTTTGAATAAG+GGG | - | chr1_3:63609951-63609970 | None:intergenic | 25.0% |
| !!! | GATAAATGCGTTTTGAATAA+GGG | - | chr1_3:63609952-63609971 | None:intergenic | 25.0% |
| !!! | AGATAAATGCGTTTTGAATA+AGG | - | chr1_3:63609953-63609972 | None:intergenic | 25.0% |
| ! | ATATAAAGTTGGATAGAGAT+AGG | + | chr1_3:63610080-63610099 | Msa0132530:intron | 25.0% |
| ! | TTTAAAAATGGCAGAATATC+AGG | + | chr1_3:63610288-63610307 | Msa0132530:intron | 25.0% |
| ! | AAATGTGACCGTTAAAATTT+GGG | - | chr1_3:63610542-63610561 | None:intergenic | 25.0% |
| ! | AAAATGTGACCGTTAAAATT+TGG | - | chr1_3:63610543-63610562 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATCTATCGACGA+TGG | + | chr1_3:63610560-63610579 | Msa0132530:intron | 25.0% |
| !!! | TTTTTTTATCTATCGACGAT+GGG | + | chr1_3:63610561-63610580 | Msa0132530:intron | 25.0% |
| !!! | AATTATGTTTTTGAACACCA+GGG | - | chr1_3:63611020-63611039 | None:intergenic | 25.0% |
| !!! | ATACTTTTTTGCTTGATTTG+TGG | - | chr1_3:63609866-63609885 | None:intergenic | 25.0% |
| ! | CTGCTTATCAAATAAACTAT+AGG | - | chr1_3:63609910-63609929 | None:intergenic | 25.0% |
| !!! | ATAAATGCGTTTTGAATAAG+GGG | - | chr1_3:63609951-63609970 | None:intergenic | 25.0% |
| !!! | GATAAATGCGTTTTGAATAA+GGG | - | chr1_3:63609952-63609971 | None:intergenic | 25.0% |
| !!! | AGATAAATGCGTTTTGAATA+AGG | - | chr1_3:63609953-63609972 | None:intergenic | 25.0% |
| ! | ATATAAAGTTGGATAGAGAT+AGG | + | chr1_3:63610080-63610099 | Msa0132530:intron | 25.0% |
| ! | TTTAAAAATGGCAGAATATC+AGG | + | chr1_3:63610288-63610307 | Msa0132530:intron | 25.0% |
| ! | AAATGTGACCGTTAAAATTT+GGG | - | chr1_3:63610542-63610561 | None:intergenic | 25.0% |
| ! | AAAATGTGACCGTTAAAATT+TGG | - | chr1_3:63610543-63610562 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATCTATCGACGA+TGG | + | chr1_3:63610560-63610579 | Msa0132530:intron | 25.0% |
| !!! | TTTTTTTATCTATCGACGAT+GGG | + | chr1_3:63610561-63610580 | Msa0132530:intron | 25.0% |
| !!! | AATTATGTTTTTGAACACCA+GGG | - | chr1_3:63611020-63611039 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTTGATTTGTGGT+TGG | - | chr1_3:63609862-63609881 | None:intergenic | 30.0% |
| AAACGGAGTCAATATTTAAG+TGG | - | chr1_3:63610029-63610048 | None:intergenic | 30.0% | |
| !! | TAAATATTGACTCCGTTTGA+CGG | + | chr1_3:63610031-63610050 | Msa0132530:intron | 30.0% |
| GATAGAGATAGGATATGATA+AGG | + | chr1_3:63610091-63610110 | Msa0132530:intron | 30.0% | |
| GTAATTTCTATCCTGAGTAT+AGG | - | chr1_3:63610366-63610385 | None:intergenic | 30.0% | |
| ACTCAGGATAGAAATTACAA+AGG | + | chr1_3:63610368-63610387 | Msa0132530:intron | 30.0% | |
| AGAAATTACAAAGGAAAGTC+AGG | + | chr1_3:63610377-63610396 | Msa0132530:intron | 30.0% | |
| ATCAAACATGAGATTTAAGC+AGG | + | chr1_3:63610443-63610462 | Msa0132530:intron | 30.0% | |
| GAGATATTTAGTGTGTTTGA+TGG | - | chr1_3:63610507-63610526 | None:intergenic | 30.0% | |
| TGGTGGAATAAAAGAGAAAA+CGG | - | chr1_3:63610766-63610785 | None:intergenic | 30.0% | |
| ! | TTTTCTCTTTTATTCCACCA+AGG | + | chr1_3:63610766-63610785 | Msa0132530:CDS | 30.0% |
| ! | GATATTTTTCCACAAGATGA+AGG | - | chr1_3:63610835-63610854 | None:intergenic | 30.0% |
| !!! | GGTCATTTTTCAATCGAAAT+GGG | - | chr1_3:63610870-63610889 | None:intergenic | 30.0% |
| TGTGAAATTGTTGTAGTTGA+TGG | - | chr1_3:63610983-63611002 | None:intergenic | 30.0% | |
| !! | CAATTATGTTTTTGAACACC+AGG | - | chr1_3:63611021-63611040 | None:intergenic | 30.0% |
| GATTGAGACAAGAAATTGAT+AGG | - | chr1_3:63611054-63611073 | None:intergenic | 30.0% | |
| ATATTTGATCAGTAATTGCC+TGG | - | chr1_3:63611128-63611147 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTTGATTTGTGGT+TGG | - | chr1_3:63609862-63609881 | None:intergenic | 30.0% |
| AAACGGAGTCAATATTTAAG+TGG | - | chr1_3:63610029-63610048 | None:intergenic | 30.0% | |
| !! | TAAATATTGACTCCGTTTGA+CGG | + | chr1_3:63610031-63610050 | Msa0132530:intron | 30.0% |
| GATAGAGATAGGATATGATA+AGG | + | chr1_3:63610091-63610110 | Msa0132530:intron | 30.0% | |
| GTAATTTCTATCCTGAGTAT+AGG | - | chr1_3:63610366-63610385 | None:intergenic | 30.0% | |
| ACTCAGGATAGAAATTACAA+AGG | + | chr1_3:63610368-63610387 | Msa0132530:intron | 30.0% | |
| AGAAATTACAAAGGAAAGTC+AGG | + | chr1_3:63610377-63610396 | Msa0132530:intron | 30.0% | |
| ATCAAACATGAGATTTAAGC+AGG | + | chr1_3:63610443-63610462 | Msa0132530:intron | 30.0% | |
| GAGATATTTAGTGTGTTTGA+TGG | - | chr1_3:63610507-63610526 | None:intergenic | 30.0% | |
| TGGTGGAATAAAAGAGAAAA+CGG | - | chr1_3:63610766-63610785 | None:intergenic | 30.0% | |
| ! | TTTTCTCTTTTATTCCACCA+AGG | + | chr1_3:63610766-63610785 | Msa0132530:CDS | 30.0% |
| ! | GATATTTTTCCACAAGATGA+AGG | - | chr1_3:63610835-63610854 | None:intergenic | 30.0% |
| !!! | GGTCATTTTTCAATCGAAAT+GGG | - | chr1_3:63610870-63610889 | None:intergenic | 30.0% |
| TGTGAAATTGTTGTAGTTGA+TGG | - | chr1_3:63610983-63611002 | None:intergenic | 30.0% | |
| !! | CAATTATGTTTTTGAACACC+AGG | - | chr1_3:63611021-63611040 | None:intergenic | 30.0% |
| GATTGAGACAAGAAATTGAT+AGG | - | chr1_3:63611054-63611073 | None:intergenic | 30.0% | |
| ATATTTGATCAGTAATTGCC+TGG | - | chr1_3:63611128-63611147 | None:intergenic | 30.0% | |
| !!! | TGAATAAGGGGTTTTTGGTA+AGG | - | chr1_3:63609939-63609958 | None:intergenic | 35.0% |
| !! | CGTTTTGAATAAGGGGTTTT+TGG | - | chr1_3:63609944-63609963 | None:intergenic | 35.0% |
| GGCAGGATATGATATAAAGT+TGG | + | chr1_3:63610069-63610088 | Msa0132530:intron | 35.0% | |
| AATGATCTTCTAATCCCATC+AGG | + | chr1_3:63610324-63610343 | Msa0132530:intron | 35.0% | |
| GGGTTAGAAATTATCCTGAT+GGG | - | chr1_3:63610341-63610360 | None:intergenic | 35.0% | |
| ! | TGGGTTAGAAATTATCCTGA+TGG | - | chr1_3:63610342-63610361 | None:intergenic | 35.0% |
| TTACAAAGGAAAGTCAGGAT+AGG | + | chr1_3:63610382-63610401 | Msa0132530:intron | 35.0% | |
| ! | TGTGTTTGATGGTCAAGATA+GGG | - | chr1_3:63610496-63610515 | None:intergenic | 35.0% |
| ! | CTCTCCTTCCCAAATTTTAA+CGG | + | chr1_3:63610531-63610550 | Msa0132530:intron | 35.0% |
| ! | TCCAAATTTTTGACCTTTGC+AGG | + | chr1_3:63610677-63610696 | Msa0132530:intron | 35.0% |
| !! | TTTTGATTGAAAGCCTGCAA+AGG | - | chr1_3:63610693-63610712 | None:intergenic | 35.0% |
| AAGCAGCACTACAACAAATA+AGG | + | chr1_3:63610792-63610811 | Msa0132530:intron | 35.0% | |
| ! | ATTTTTCCACAAGATGAAGG+TGG | - | chr1_3:63610832-63610851 | None:intergenic | 35.0% |
| !!! | GGGTCATTTTTCAATCGAAA+TGG | - | chr1_3:63610871-63610890 | None:intergenic | 35.0% |
| !! | AATTGTTGTAGTTGATGGAC+TGG | - | chr1_3:63610978-63610997 | None:intergenic | 35.0% |
| CAACAATTTCACAATCCGAT+TGG | + | chr1_3:63610990-63611009 | Msa0132530:CDS | 35.0% | |
| AGACAAGAAATTGATAGGAG+GGG | - | chr1_3:63611049-63611068 | None:intergenic | 35.0% | |
| GAGACAAGAAATTGATAGGA+GGG | - | chr1_3:63611050-63611069 | None:intergenic | 35.0% | |
| TGAGACAAGAAATTGATAGG+AGG | - | chr1_3:63611051-63611070 | None:intergenic | 35.0% | |
| !!! | TGAATAAGGGGTTTTTGGTA+AGG | - | chr1_3:63609939-63609958 | None:intergenic | 35.0% |
| !! | CGTTTTGAATAAGGGGTTTT+TGG | - | chr1_3:63609944-63609963 | None:intergenic | 35.0% |
| GGCAGGATATGATATAAAGT+TGG | + | chr1_3:63610069-63610088 | Msa0132530:intron | 35.0% | |
| AATGATCTTCTAATCCCATC+AGG | + | chr1_3:63610324-63610343 | Msa0132530:intron | 35.0% | |
| GGGTTAGAAATTATCCTGAT+GGG | - | chr1_3:63610341-63610360 | None:intergenic | 35.0% | |
| ! | TGGGTTAGAAATTATCCTGA+TGG | - | chr1_3:63610342-63610361 | None:intergenic | 35.0% |
| TTACAAAGGAAAGTCAGGAT+AGG | + | chr1_3:63610382-63610401 | Msa0132530:intron | 35.0% | |
| ! | TGTGTTTGATGGTCAAGATA+GGG | - | chr1_3:63610496-63610515 | None:intergenic | 35.0% |
| ! | CTCTCCTTCCCAAATTTTAA+CGG | + | chr1_3:63610531-63610550 | Msa0132530:intron | 35.0% |
| ! | TCCAAATTTTTGACCTTTGC+AGG | + | chr1_3:63610677-63610696 | Msa0132530:intron | 35.0% |
| !! | TTTTGATTGAAAGCCTGCAA+AGG | - | chr1_3:63610693-63610712 | None:intergenic | 35.0% |
| AAGCAGCACTACAACAAATA+AGG | + | chr1_3:63610792-63610811 | Msa0132530:intron | 35.0% | |
| ! | ATTTTTCCACAAGATGAAGG+TGG | - | chr1_3:63610832-63610851 | None:intergenic | 35.0% |
| !!! | GGGTCATTTTTCAATCGAAA+TGG | - | chr1_3:63610871-63610890 | None:intergenic | 35.0% |
| !! | AATTGTTGTAGTTGATGGAC+TGG | - | chr1_3:63610978-63610997 | None:intergenic | 35.0% |
| CAACAATTTCACAATCCGAT+TGG | + | chr1_3:63610990-63611009 | Msa0132530:CDS | 35.0% | |
| AGACAAGAAATTGATAGGAG+GGG | - | chr1_3:63611049-63611068 | None:intergenic | 35.0% | |
| GAGACAAGAAATTGATAGGA+GGG | - | chr1_3:63611050-63611069 | None:intergenic | 35.0% | |
| TGAGACAAGAAATTGATAGG+AGG | - | chr1_3:63611051-63611070 | None:intergenic | 35.0% | |
| GTTTGTGTGAAAGATGTAGC+AGG | - | chr1_3:63609830-63609849 | None:intergenic | 40.0% | |
| !! | TGCTTGATTTGTGGTTGGAT+GGG | - | chr1_3:63609857-63609876 | None:intergenic | 40.0% |
| !! | TTGCTTGATTTGTGGTTGGA+TGG | - | chr1_3:63609858-63609877 | None:intergenic | 40.0% |
| !!! | TAAGGGGTTTTTGGTAAGGT+TGG | - | chr1_3:63609935-63609954 | None:intergenic | 40.0% |
| TTCTATCCTGAGTATAGGCT+GGG | - | chr1_3:63610361-63610380 | None:intergenic | 40.0% | |
| TTTCTATCCTGAGTATAGGC+TGG | - | chr1_3:63610362-63610381 | None:intergenic | 40.0% | |
| AAGGAAAGTCAGGATAGGAT+AGG | + | chr1_3:63610387-63610406 | Msa0132530:intron | 40.0% | |
| GTCAGGATAGGATAGGAAAA+TGG | + | chr1_3:63610394-63610413 | Msa0132530:intron | 40.0% | |
| CTCATGTTTGATGCACCAAA+GGG | - | chr1_3:63610435-63610454 | None:intergenic | 40.0% | |
| TCTCATGTTTGATGCACCAA+AGG | - | chr1_3:63610436-63610455 | None:intergenic | 40.0% | |
| ! | GTGTGTTTGATGGTCAAGAT+AGG | - | chr1_3:63610497-63610516 | None:intergenic | 40.0% |
| GTGACCGTTAAAATTTGGGA+AGG | - | chr1_3:63610538-63610557 | None:intergenic | 40.0% | |
| TATCGACGATGGGTGATTTA+GGG | + | chr1_3:63610571-63610590 | Msa0132530:intron | 40.0% | |
| GCCTGCAAAGGTCAAAAATT+TGG | - | chr1_3:63610681-63610700 | None:intergenic | 40.0% | |
| ! | TGTTGTCTGCACAGTGTTTT+GGG | - | chr1_3:63610891-63610910 | None:intergenic | 40.0% |
| TAATTGCAATGACCCATACC+AGG | + | chr1_3:63611107-63611126 | Msa0132530:CDS | 40.0% | |
| GATCAGTAATTGCCTGGTAT+GGG | - | chr1_3:63611122-63611141 | None:intergenic | 40.0% | |
| TGATCAGTAATTGCCTGGTA+TGG | - | chr1_3:63611123-63611142 | None:intergenic | 40.0% | |
| GTTTGTGTGAAAGATGTAGC+AGG | - | chr1_3:63609830-63609849 | None:intergenic | 40.0% | |
| !! | TGCTTGATTTGTGGTTGGAT+GGG | - | chr1_3:63609857-63609876 | None:intergenic | 40.0% |
| !! | TTGCTTGATTTGTGGTTGGA+TGG | - | chr1_3:63609858-63609877 | None:intergenic | 40.0% |
| !!! | TAAGGGGTTTTTGGTAAGGT+TGG | - | chr1_3:63609935-63609954 | None:intergenic | 40.0% |
| TTCTATCCTGAGTATAGGCT+GGG | - | chr1_3:63610361-63610380 | None:intergenic | 40.0% | |
| TTTCTATCCTGAGTATAGGC+TGG | - | chr1_3:63610362-63610381 | None:intergenic | 40.0% | |
| AAGGAAAGTCAGGATAGGAT+AGG | + | chr1_3:63610387-63610406 | Msa0132530:intron | 40.0% | |
| GTCAGGATAGGATAGGAAAA+TGG | + | chr1_3:63610394-63610413 | Msa0132530:intron | 40.0% | |
| CTCATGTTTGATGCACCAAA+GGG | - | chr1_3:63610435-63610454 | None:intergenic | 40.0% | |
| TCTCATGTTTGATGCACCAA+AGG | - | chr1_3:63610436-63610455 | None:intergenic | 40.0% | |
| ! | GTGTGTTTGATGGTCAAGAT+AGG | - | chr1_3:63610497-63610516 | None:intergenic | 40.0% |
| GTGACCGTTAAAATTTGGGA+AGG | - | chr1_3:63610538-63610557 | None:intergenic | 40.0% | |
| TATCGACGATGGGTGATTTA+GGG | + | chr1_3:63610571-63610590 | Msa0132530:intron | 40.0% | |
| GCCTGCAAAGGTCAAAAATT+TGG | - | chr1_3:63610681-63610700 | None:intergenic | 40.0% | |
| ! | TGTTGTCTGCACAGTGTTTT+GGG | - | chr1_3:63610891-63610910 | None:intergenic | 40.0% |
| TAATTGCAATGACCCATACC+AGG | + | chr1_3:63611107-63611126 | Msa0132530:CDS | 40.0% | |
| GATCAGTAATTGCCTGGTAT+GGG | - | chr1_3:63611122-63611141 | None:intergenic | 40.0% | |
| TGATCAGTAATTGCCTGGTA+TGG | - | chr1_3:63611123-63611142 | None:intergenic | 40.0% | |
| !! | GCTTGATTTGTGGTTGGATG+GGG | - | chr1_3:63609856-63609875 | None:intergenic | 45.0% |
| ATCCTATCCTGACCGTCAAA+CGG | - | chr1_3:63610046-63610065 | None:intergenic | 45.0% | |
| TTCTAACCCAGCCTATACTC+AGG | + | chr1_3:63610352-63610371 | Msa0132530:intron | 45.0% | |
| CTATCGACGATGGGTGATTT+AGG | + | chr1_3:63610570-63610589 | Msa0132530:intron | 45.0% | |
| AAAACACCTTCGCTGCTATG+TGG | + | chr1_3:63610710-63610729 | Msa0132530:CDS | 45.0% | |
| !! | TTGTAGTGCTGCTTCAACCT+TGG | - | chr1_3:63610786-63610805 | None:intergenic | 45.0% |
| GTTTGTCCACCTTCATCTTG+TGG | + | chr1_3:63610823-63610842 | Msa0132530:CDS | 45.0% | |
| ! | CTGTTGTCTGCACAGTGTTT+TGG | - | chr1_3:63610892-63610911 | None:intergenic | 45.0% |
| CAAAACACTGTGCAGACAAC+AGG | + | chr1_3:63610890-63610909 | Msa0132530:CDS | 45.0% | |
| !! | GCTTGATTTGTGGTTGGATG+GGG | - | chr1_3:63609856-63609875 | None:intergenic | 45.0% |
| ATCCTATCCTGACCGTCAAA+CGG | - | chr1_3:63610046-63610065 | None:intergenic | 45.0% | |
| TTCTAACCCAGCCTATACTC+AGG | + | chr1_3:63610352-63610371 | Msa0132530:intron | 45.0% | |
| CTATCGACGATGGGTGATTT+AGG | + | chr1_3:63610570-63610589 | Msa0132530:intron | 45.0% | |
| AAAACACCTTCGCTGCTATG+TGG | + | chr1_3:63610710-63610729 | Msa0132530:CDS | 45.0% | |
| !! | TTGTAGTGCTGCTTCAACCT+TGG | - | chr1_3:63610786-63610805 | None:intergenic | 45.0% |
| GTTTGTCCACCTTCATCTTG+TGG | + | chr1_3:63610823-63610842 | Msa0132530:CDS | 45.0% | |
| ! | CTGTTGTCTGCACAGTGTTT+TGG | - | chr1_3:63610892-63610911 | None:intergenic | 45.0% |
| CAAAACACTGTGCAGACAAC+AGG | + | chr1_3:63610890-63610909 | Msa0132530:CDS | 45.0% | |
| GATTTGTGGTTGGATGGGGT+CGG | - | chr1_3:63609852-63609871 | None:intergenic | 50.0% | |
| ! | ATTGACTCCGTTTGACGGTC+AGG | + | chr1_3:63610036-63610055 | Msa0132530:intron | 50.0% |
| TGACGGTCAGGATAGGATAG+AGG | + | chr1_3:63610048-63610067 | Msa0132530:intron | 50.0% | |
| GCGCGCATCAAACACATGAT+AGG | - | chr1_3:63610134-63610153 | None:intergenic | 50.0% | |
| GATGGTCAAGATAGGGAGAC+AGG | - | chr1_3:63610489-63610508 | None:intergenic | 50.0% | |
| !! | TAGTGCTGCTTCAACCTTGG+TGG | - | chr1_3:63610783-63610802 | None:intergenic | 50.0% |
| ACAATCCGATTGGTAGACCC+TGG | + | chr1_3:63611000-63611019 | Msa0132530:CDS | 50.0% | |
| GAACACCAGGGTCTACCAAT+CGG | - | chr1_3:63611008-63611027 | None:intergenic | 50.0% | |
| GATTTGTGGTTGGATGGGGT+CGG | - | chr1_3:63609852-63609871 | None:intergenic | 50.0% | |
| ! | ATTGACTCCGTTTGACGGTC+AGG | + | chr1_3:63610036-63610055 | Msa0132530:intron | 50.0% |
| TGACGGTCAGGATAGGATAG+AGG | + | chr1_3:63610048-63610067 | Msa0132530:intron | 50.0% | |
| GCGCGCATCAAACACATGAT+AGG | - | chr1_3:63610134-63610153 | None:intergenic | 50.0% | |
| GATGGTCAAGATAGGGAGAC+AGG | - | chr1_3:63610489-63610508 | None:intergenic | 50.0% | |
| !! | TAGTGCTGCTTCAACCTTGG+TGG | - | chr1_3:63610783-63610802 | None:intergenic | 50.0% |
| ACAATCCGATTGGTAGACCC+TGG | + | chr1_3:63611000-63611019 | Msa0132530:CDS | 50.0% | |
| GAACACCAGGGTCTACCAAT+CGG | - | chr1_3:63611008-63611027 | None:intergenic | 50.0% | |
| CTCCGTTTGACGGTCAGGAT+AGG | + | chr1_3:63610041-63610060 | Msa0132530:intron | 55.0% | |
| GGTCAGGATAGGATAGAGGC+AGG | + | chr1_3:63610052-63610071 | Msa0132530:intron | 55.0% | |
| ACACCTTCGCTGCTATGTGG+TGG | + | chr1_3:63610713-63610732 | Msa0132530:CDS | 55.0% | |
| CACCTTCGCTGCTATGTGGT+GGG | + | chr1_3:63610714-63610733 | Msa0132530:CDS | 55.0% | |
| CTCCGTTTGACGGTCAGGAT+AGG | + | chr1_3:63610041-63610060 | Msa0132530:intron | 55.0% | |
| GGTCAGGATAGGATAGAGGC+AGG | + | chr1_3:63610052-63610071 | Msa0132530:intron | 55.0% | |
| ACACCTTCGCTGCTATGTGG+TGG | + | chr1_3:63610713-63610732 | Msa0132530:CDS | 55.0% | |
| CACCTTCGCTGCTATGTGGT+GGG | + | chr1_3:63610714-63610733 | Msa0132530:CDS | 55.0% | |
| CACCCACCACATAGCAGCGA+AGG | - | chr1_3:63610719-63610738 | None:intergenic | 60.0% | |
| !! | GTGGTGGGTGAGAGTGATGC+TGG | + | chr1_3:63610729-63610748 | Msa0132530:CDS | 60.0% |
| CACCCACCACATAGCAGCGA+AGG | - | chr1_3:63610719-63610738 | None:intergenic | 60.0% | |
| !! | GTGGTGGGTGAGAGTGATGC+TGG | + | chr1_3:63610729-63610748 | Msa0132530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 63609816 | 63611149 | 63609816 | ID=Msa0132530;Name=Msa0132530 |
| chr1_3 | mRNA | 63609816 | 63611149 | 63609816 | ID=Msa0132530-mRNA-1;Parent=Msa0132530;Name=Msa0132530-mRNA-1;_AED=0.51;_eAED=0.61;_QI=0|0|0|0.66|0|0|3|0|169 |
| chr1_3 | exon | 63609816 | 63609881 | 63609816 | ID=Msa0132530-mRNA-1:exon:21320;Parent=Msa0132530-mRNA-1 |
| chr1_3 | exon | 63610699 | 63610787 | 63610699 | ID=Msa0132530-mRNA-1:exon:21321;Parent=Msa0132530-mRNA-1 |
| chr1_3 | exon | 63610795 | 63611149 | 63610795 | ID=Msa0132530-mRNA-1:exon:21322;Parent=Msa0132530-mRNA-1 |
| chr1_3 | CDS | 63609816 | 63609881 | 63609816 | ID=Msa0132530-mRNA-1:cds;Parent=Msa0132530-mRNA-1 |
| chr1_3 | CDS | 63610699 | 63610787 | 63610699 | ID=Msa0132530-mRNA-1:cds;Parent=Msa0132530-mRNA-1 |
| chr1_3 | CDS | 63610795 | 63611149 | 63610795 | ID=Msa0132530-mRNA-1:cds;Parent=Msa0132530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
