Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132550 | A0A072VFH7 | 64.789 | 71 | 24 | 1 | 5 | 75 | 7 | 76 | 2.33e-21 | 95.9 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0132530 | Msa0132550 | 0.838864 | 2.231684e-57 | -8.615850e-47 |
Msa0132540 | Msa0132550 | 0.860188 | 2.458436e-63 | -8.615850e-47 |
Msa0132550 | Msa0410170 | 0.820948 | 5.235502e-53 | -8.615850e-47 |
Msa0132550 | Msa0500680 | 0.836353 | 9.836976e-57 | -8.615850e-47 |
Msa0132550 | Msa0887620 | 0.855920 | 4.564437e-62 | -8.615850e-47 |
Msa0132550 | Msa1015930 | 0.839208 | 1.818122e-57 | -8.615850e-47 |
Msa0132550 | Msa1223290 | 0.858790 | 6.468844e-63 | -8.615850e-47 |
Msa0132550 | Msa1263840 | 0.821947 | 3.079646e-53 | -8.615850e-47 |
Msa0132550 | Msa1263880 | 0.802967 | 4.362440e-49 | -8.615850e-47 |
Msa0132550 | Msa1348270 | 0.813246 | 2.819953e-51 | -8.615850e-47 |
Msa0132550 | Msa1367250 | 0.862228 | 5.880266e-64 | -8.615850e-47 |
Msa0132550 | Msa1420460 | 0.819757 | 9.820073e-53 | -8.615850e-47 |
Msa0132550 | Msa1430360 | 0.880944 | 3.613924e-70 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0132550 | MtrunA17_Chr1g0158131 | 71.667 | 60 | 16 | 1 | 16 | 75 | 116 | 174 | 2.15e-22 | 88.2 |
Msa0132550 | MtrunA17_Chr1g0158191 | 66.129 | 62 | 20 | 1 | 14 | 75 | 302 | 362 | 3.24e-22 | 88.2 |
Msa0132550 | MtrunA17_Chr1g0158041 | 66.667 | 60 | 19 | 1 | 16 | 75 | 304 | 362 | 8.71e-21 | 84.0 |
Msa0132550 | MtrunA17_Chr1g0157811 | 60.000 | 60 | 23 | 1 | 16 | 75 | 112 | 170 | 5.41e-18 | 76.3 |
Msa0132550 | MtrunA17_Chr1g0157951 | 53.333 | 60 | 25 | 1 | 16 | 75 | 95 | 151 | 7.73e-17 | 72.8 |
Msa0132550 | MtrunA17_Chr1g0158151 | 56.452 | 62 | 25 | 2 | 14 | 75 | 297 | 356 | 1.89e-16 | 71.6 |
Msa0132550 | MtrunA17_Chr1g0158091 | 71.429 | 42 | 12 | 0 | 34 | 75 | 2 | 43 | 2.66e-16 | 71.2 |
Msa0132550 | MtrunA17_Chr1g0157791 | 56.667 | 60 | 25 | 1 | 16 | 75 | 299 | 357 | 1.07e-15 | 69.7 |
Msa0132550 | MtrunA17_Chr1g0157991 | 55.000 | 60 | 26 | 1 | 16 | 75 | 306 | 364 | 4.83e-15 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 10 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGTTGGTACAACATTAC+AGG | 0.294836 | 1_3:+63615759 | Msa0132550:CDS |
GGACTCGTTGAAGTAATAAA+AGG | 0.335079 | 1_3:+63615780 | Msa0132550:CDS |
TGGCAGTTAGACTTCTGTTT+GGG | 0.353241 | 1_3:+63615883 | Msa0132550:CDS |
TTGGCAGTTAGACTTCTGTT+TGG | 0.364954 | 1_3:+63615882 | Msa0132550:CDS |
AGTATCTATATTTATCTTGT+TGG | 0.396890 | 1_3:+63615745 | Msa0132550:intron |
TTCATTCTATGACGTAGGCT+TGG | 0.479652 | 1_3:+63615830 | Msa0132550:CDS |
TATGACGTAGGCTTGGCAAT+AGG | 0.494487 | 1_3:+63615837 | Msa0132550:CDS |
TCGCACTATTGATATACAGA+TGG | 0.587433 | 1_3:+63615919 | Msa0132550:CDS |
TAAAAGGACAAATTAACTCA+AGG | 0.588599 | 1_3:+63615796 | Msa0132550:CDS |
GTTTATTCATTCTATGACGT+AGG | 0.589542 | 1_3:+63615825 | Msa0132550:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTTATTTGTGTTATAA+TGG | - | chr1_3:63615596-63615615 | None:intergenic | 10.0% |
!!! | CTTTTTTTTATGAAATAAAA+AGG | - | chr1_3:63615656-63615675 | None:intergenic | 10.0% |
!!! | TATTTTTATTTGTGTTATAA+TGG | - | chr1_3:63615596-63615615 | None:intergenic | 10.0% |
!!! | CTTTTTTTTATGAAATAAAA+AGG | - | chr1_3:63615656-63615675 | None:intergenic | 10.0% |
!!! | TTATCTTTTCATATTCTTTT+AGG | + | chr1_3:63614854-63614873 | Msa0132550:intron | 15.0% |
!! | AAGAAATATGAAAAAAAACA+TGG | + | chr1_3:63615353-63615372 | Msa0132550:intron | 15.0% |
!!! | AATTTGAACATATTTTATCA+AGG | - | chr1_3:63615718-63615737 | None:intergenic | 15.0% |
!! | TGATAAAATATGTTCAAATT+TGG | + | chr1_3:63615718-63615737 | Msa0132550:intron | 15.0% |
!!! | TTATCTTTTCATATTCTTTT+AGG | + | chr1_3:63614854-63614873 | Msa0132550:intron | 15.0% |
!! | AAGAAATATGAAAAAAAACA+TGG | + | chr1_3:63615353-63615372 | Msa0132550:intron | 15.0% |
!!! | AATTTGAACATATTTTATCA+AGG | - | chr1_3:63615718-63615737 | None:intergenic | 15.0% |
!! | TGATAAAATATGTTCAAATT+TGG | + | chr1_3:63615718-63615737 | Msa0132550:intron | 15.0% |
!! | CAACGAAAATAATTATTGTT+AGG | + | chr1_3:63615160-63615179 | Msa0132550:intron | 20.0% |
!! | TTCAACAATATCTTTATTGT+TGG | - | chr1_3:63615200-63615219 | None:intergenic | 20.0% |
!!! | ACACAATACCTTTATTTTTA+TGG | - | chr1_3:63615379-63615398 | None:intergenic | 20.0% |
!!! | AAAGTGGAATTTTTTTTAGT+GGG | + | chr1_3:63615478-63615497 | Msa0132550:intron | 20.0% |
!!! | ACATATTTTATCAAGGTTTA+AGG | - | chr1_3:63615711-63615730 | None:intergenic | 20.0% |
!! | AGTATCTATATTTATCTTGT+TGG | + | chr1_3:63615745-63615764 | Msa0132550:intron | 20.0% |
!! | CAACGAAAATAATTATTGTT+AGG | + | chr1_3:63615160-63615179 | Msa0132550:intron | 20.0% |
!! | TTCAACAATATCTTTATTGT+TGG | - | chr1_3:63615200-63615219 | None:intergenic | 20.0% |
!!! | ACACAATACCTTTATTTTTA+TGG | - | chr1_3:63615379-63615398 | None:intergenic | 20.0% |
!!! | AAAGTGGAATTTTTTTTAGT+GGG | + | chr1_3:63615478-63615497 | Msa0132550:intron | 20.0% |
!!! | ACATATTTTATCAAGGTTTA+AGG | - | chr1_3:63615711-63615730 | None:intergenic | 20.0% |
!! | AGTATCTATATTTATCTTGT+TGG | + | chr1_3:63615745-63615764 | Msa0132550:intron | 20.0% |
! | TTAAAGATCACTAAGTAAAG+AGG | + | chr1_3:63614668-63614687 | Msa0132550:intron | 25.0% |
!! | GGAATTATATAAGCTTTTAG+CGG | - | chr1_3:63615018-63615037 | None:intergenic | 25.0% |
!!! | ATCAGCAACAATTAATTTGT+TGG | - | chr1_3:63615280-63615299 | None:intergenic | 25.0% |
! | AAACATGGCCATAAAAATAA+AGG | + | chr1_3:63615368-63615387 | Msa0132550:intron | 25.0% |
!!! | CAAAGTGGAATTTTTTTTAG+TGG | + | chr1_3:63615477-63615496 | Msa0132550:intron | 25.0% |
! | ATAATATGCTAACTAATCCA+CGG | - | chr1_3:63615509-63615528 | None:intergenic | 25.0% |
!!! | TGGATTAGTTAGCATATTAT+TGG | + | chr1_3:63615509-63615528 | Msa0132550:intron | 25.0% |
! | GAAATAAAAAGGATGAAGAA+TGG | - | chr1_3:63615645-63615664 | None:intergenic | 25.0% |
! | TAAAAGGACAAATTAACTCA+AGG | + | chr1_3:63615796-63615815 | Msa0132550:CDS | 25.0% |
!! | TTACATTCTACCATCATTTT+TGG | + | chr1_3:63615863-63615882 | Msa0132550:CDS | 25.0% |
! | TTAAAGATCACTAAGTAAAG+AGG | + | chr1_3:63614668-63614687 | Msa0132550:intron | 25.0% |
!! | GGAATTATATAAGCTTTTAG+CGG | - | chr1_3:63615018-63615037 | None:intergenic | 25.0% |
!!! | ATCAGCAACAATTAATTTGT+TGG | - | chr1_3:63615280-63615299 | None:intergenic | 25.0% |
! | AAACATGGCCATAAAAATAA+AGG | + | chr1_3:63615368-63615387 | Msa0132550:intron | 25.0% |
!!! | CAAAGTGGAATTTTTTTTAG+TGG | + | chr1_3:63615477-63615496 | Msa0132550:intron | 25.0% |
! | ATAATATGCTAACTAATCCA+CGG | - | chr1_3:63615509-63615528 | None:intergenic | 25.0% |
!!! | TGGATTAGTTAGCATATTAT+TGG | + | chr1_3:63615509-63615528 | Msa0132550:intron | 25.0% |
! | GAAATAAAAAGGATGAAGAA+TGG | - | chr1_3:63615645-63615664 | None:intergenic | 25.0% |
! | TAAAAGGACAAATTAACTCA+AGG | + | chr1_3:63615796-63615815 | Msa0132550:CDS | 25.0% |
!! | TTACATTCTACCATCATTTT+TGG | + | chr1_3:63615863-63615882 | Msa0132550:CDS | 25.0% |
! | TAACTAACTTGCAAGTTTGT+AGG | - | chr1_3:63614726-63614745 | None:intergenic | 30.0% |
ACAATATCAACTTTGCTAGT+AGG | + | chr1_3:63614800-63614819 | Msa0132550:intron | 30.0% | |
CAATATCAACTTTGCTAGTA+GGG | + | chr1_3:63614801-63614820 | Msa0132550:intron | 30.0% | |
ATCAACGTAACTTATTGTTG+GGG | - | chr1_3:63615119-63615138 | None:intergenic | 30.0% | |
CATCAACGTAACTTATTGTT+GGG | - | chr1_3:63615120-63615139 | None:intergenic | 30.0% | |
TATTTCTTGTAGTGTCACAT+CGG | + | chr1_3:63615322-63615341 | Msa0132550:intron | 30.0% | |
GAATTTCTTGCACAAATAGT+AGG | + | chr1_3:63615403-63615422 | Msa0132550:intron | 30.0% | |
CAATGATTACAGAAACTGAA+TGG | - | chr1_3:63615455-63615474 | None:intergenic | 30.0% | |
TCTGTAATCATTGATCAAAG+TGG | + | chr1_3:63615462-63615481 | Msa0132550:intron | 30.0% | |
AAACGATACAAGATTTAACG+TGG | - | chr1_3:63615538-63615557 | None:intergenic | 30.0% | |
GTTTATTCATTCTATGACGT+AGG | + | chr1_3:63615825-63615844 | Msa0132550:CDS | 30.0% | |
! | TAACTAACTTGCAAGTTTGT+AGG | - | chr1_3:63614726-63614745 | None:intergenic | 30.0% |
ACAATATCAACTTTGCTAGT+AGG | + | chr1_3:63614800-63614819 | Msa0132550:intron | 30.0% | |
CAATATCAACTTTGCTAGTA+GGG | + | chr1_3:63614801-63614820 | Msa0132550:intron | 30.0% | |
ATCAACGTAACTTATTGTTG+GGG | - | chr1_3:63615119-63615138 | None:intergenic | 30.0% | |
CATCAACGTAACTTATTGTT+GGG | - | chr1_3:63615120-63615139 | None:intergenic | 30.0% | |
TATTTCTTGTAGTGTCACAT+CGG | + | chr1_3:63615322-63615341 | Msa0132550:intron | 30.0% | |
GAATTTCTTGCACAAATAGT+AGG | + | chr1_3:63615403-63615422 | Msa0132550:intron | 30.0% | |
CAATGATTACAGAAACTGAA+TGG | - | chr1_3:63615455-63615474 | None:intergenic | 30.0% | |
TCTGTAATCATTGATCAAAG+TGG | + | chr1_3:63615462-63615481 | Msa0132550:intron | 30.0% | |
AAACGATACAAGATTTAACG+TGG | - | chr1_3:63615538-63615557 | None:intergenic | 30.0% | |
GTTTATTCATTCTATGACGT+AGG | + | chr1_3:63615825-63615844 | Msa0132550:CDS | 30.0% | |
! | ACTCAGGATATCAAGTTGTA+AGG | - | chr1_3:63614752-63614771 | None:intergenic | 35.0% |
GCAACAACATAACATCTGAT+GGG | - | chr1_3:63615039-63615058 | None:intergenic | 35.0% | |
TGCAACAACATAACATCTGA+TGG | - | chr1_3:63615040-63615059 | None:intergenic | 35.0% | |
ATTATTCCCGACGAAAAATG+AGG | + | chr1_3:63615070-63615089 | Msa0132550:intron | 35.0% | |
! | TTGGGGATACTATGTTCTTT+TGG | - | chr1_3:63615102-63615121 | None:intergenic | 35.0% |
GCATCAACGTAACTTATTGT+TGG | - | chr1_3:63615121-63615140 | None:intergenic | 35.0% | |
CAACAATTTATTGAAGTCGC+TGG | - | chr1_3:63615240-63615259 | None:intergenic | 35.0% | |
ATTTCTTGTAGTGTCACATC+GGG | + | chr1_3:63615323-63615342 | Msa0132550:intron | 35.0% | |
!! | ATAGTAGGTTTTGCTATAGC+TGG | + | chr1_3:63615418-63615437 | Msa0132550:intron | 35.0% |
TTACAGAAACTGAATGGTAG+AGG | - | chr1_3:63615449-63615468 | None:intergenic | 35.0% | |
TCTTGTTGGTACAACATTAC+AGG | + | chr1_3:63615759-63615778 | Msa0132550:CDS | 35.0% | |
GGACTCGTTGAAGTAATAAA+AGG | + | chr1_3:63615780-63615799 | Msa0132550:CDS | 35.0% | |
AGTCTAACTGCCAAAAATGA+TGG | - | chr1_3:63615876-63615895 | None:intergenic | 35.0% | |
TCGCACTATTGATATACAGA+TGG | + | chr1_3:63615919-63615938 | Msa0132550:CDS | 35.0% | |
! | ACTCAGGATATCAAGTTGTA+AGG | - | chr1_3:63614752-63614771 | None:intergenic | 35.0% |
GCAACAACATAACATCTGAT+GGG | - | chr1_3:63615039-63615058 | None:intergenic | 35.0% | |
TGCAACAACATAACATCTGA+TGG | - | chr1_3:63615040-63615059 | None:intergenic | 35.0% | |
ATTATTCCCGACGAAAAATG+AGG | + | chr1_3:63615070-63615089 | Msa0132550:intron | 35.0% | |
! | TTGGGGATACTATGTTCTTT+TGG | - | chr1_3:63615102-63615121 | None:intergenic | 35.0% |
GCATCAACGTAACTTATTGT+TGG | - | chr1_3:63615121-63615140 | None:intergenic | 35.0% | |
CAACAATTTATTGAAGTCGC+TGG | - | chr1_3:63615240-63615259 | None:intergenic | 35.0% | |
ATTTCTTGTAGTGTCACATC+GGG | + | chr1_3:63615323-63615342 | Msa0132550:intron | 35.0% | |
!! | ATAGTAGGTTTTGCTATAGC+TGG | + | chr1_3:63615418-63615437 | Msa0132550:intron | 35.0% |
TTACAGAAACTGAATGGTAG+AGG | - | chr1_3:63615449-63615468 | None:intergenic | 35.0% | |
TCTTGTTGGTACAACATTAC+AGG | + | chr1_3:63615759-63615778 | Msa0132550:CDS | 35.0% | |
GGACTCGTTGAAGTAATAAA+AGG | + | chr1_3:63615780-63615799 | Msa0132550:CDS | 35.0% | |
AGTCTAACTGCCAAAAATGA+TGG | - | chr1_3:63615876-63615895 | None:intergenic | 35.0% | |
TCGCACTATTGATATACAGA+TGG | + | chr1_3:63615919-63615938 | Msa0132550:CDS | 35.0% | |
ACTTGCAAGTTTGTAGGACT+AGG | - | chr1_3:63614720-63614739 | None:intergenic | 40.0% | |
CTTCGTCTAGATTCAAACTC+AGG | - | chr1_3:63614768-63614787 | None:intergenic | 40.0% | |
CTGAGTTTGAATCTAGACGA+AGG | + | chr1_3:63614766-63614785 | Msa0132550:intron | 40.0% | |
TCAACTTTGCTAGTAGGGTT+AGG | + | chr1_3:63614806-63614825 | Msa0132550:intron | 40.0% | |
!!! | TTTTTTAGTGGGTATGTCCG+TGG | + | chr1_3:63615489-63615508 | Msa0132550:intron | 40.0% |
TTCATTCTATGACGTAGGCT+TGG | + | chr1_3:63615830-63615849 | Msa0132550:CDS | 40.0% | |
TTGGCAGTTAGACTTCTGTT+TGG | + | chr1_3:63615882-63615901 | Msa0132550:CDS | 40.0% | |
TGGCAGTTAGACTTCTGTTT+GGG | + | chr1_3:63615883-63615902 | Msa0132550:CDS | 40.0% | |
ACAGATGGCGAAAAAGACAT+TGG | + | chr1_3:63615934-63615953 | Msa0132550:CDS | 40.0% | |
ACTTGCAAGTTTGTAGGACT+AGG | - | chr1_3:63614720-63614739 | None:intergenic | 40.0% | |
CTTCGTCTAGATTCAAACTC+AGG | - | chr1_3:63614768-63614787 | None:intergenic | 40.0% | |
CTGAGTTTGAATCTAGACGA+AGG | + | chr1_3:63614766-63614785 | Msa0132550:intron | 40.0% | |
TCAACTTTGCTAGTAGGGTT+AGG | + | chr1_3:63614806-63614825 | Msa0132550:intron | 40.0% | |
!!! | TTTTTTAGTGGGTATGTCCG+TGG | + | chr1_3:63615489-63615508 | Msa0132550:intron | 40.0% |
TTCATTCTATGACGTAGGCT+TGG | + | chr1_3:63615830-63615849 | Msa0132550:CDS | 40.0% | |
TTGGCAGTTAGACTTCTGTT+TGG | + | chr1_3:63615882-63615901 | Msa0132550:CDS | 40.0% | |
TGGCAGTTAGACTTCTGTTT+GGG | + | chr1_3:63615883-63615902 | Msa0132550:CDS | 40.0% | |
ACAGATGGCGAAAAAGACAT+TGG | + | chr1_3:63615934-63615953 | Msa0132550:CDS | 40.0% | |
GCAGCGACAAGTTATGTTGT+TGG | + | chr1_3:63614956-63614975 | Msa0132550:intron | 45.0% | |
CGGCAATATTGTGAAATCGC+TGG | - | chr1_3:63614998-63615017 | None:intergenic | 45.0% | |
!! | CAGCAACCTCATTTTTCGTC+GGG | - | chr1_3:63615079-63615098 | None:intergenic | 45.0% |
!! | GCAGCAACCTCATTTTTCGT+CGG | - | chr1_3:63615080-63615099 | None:intergenic | 45.0% |
TATGACGTAGGCTTGGCAAT+AGG | + | chr1_3:63615837-63615856 | Msa0132550:CDS | 45.0% | |
GCAGCGACAAGTTATGTTGT+TGG | + | chr1_3:63614956-63614975 | Msa0132550:intron | 45.0% | |
CGGCAATATTGTGAAATCGC+TGG | - | chr1_3:63614998-63615017 | None:intergenic | 45.0% | |
!! | CAGCAACCTCATTTTTCGTC+GGG | - | chr1_3:63615079-63615098 | None:intergenic | 45.0% |
!! | GCAGCAACCTCATTTTTCGT+CGG | - | chr1_3:63615080-63615099 | None:intergenic | 45.0% |
TATGACGTAGGCTTGGCAAT+AGG | + | chr1_3:63615837-63615856 | Msa0132550:CDS | 45.0% | |
!!! | TTTATATTATTTTTTTTGAA+AGG | - | chr1_3:63614933-63614952 | None:intergenic | 5.0% |
!!! | TTTATATTATTTTTTTTGAA+AGG | - | chr1_3:63614933-63614952 | None:intergenic | 5.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 63614660 | 63615959 | 63614660 | ID=Msa0132550;Name=Msa0132550 |
chr1_3 | mRNA | 63614660 | 63615959 | 63614660 | ID=Msa0132550-mRNA-1;Parent=Msa0132550;Name=Msa0132550-mRNA-1;_AED=0.50;_eAED=0.54;_QI=0|0|0|0.33|0|0|3|0|75 |
chr1_3 | exon | 63614660 | 63614665 | 63614660 | ID=Msa0132550-mRNA-1:exon:21325;Parent=Msa0132550-mRNA-1 |
chr1_3 | exon | 63614960 | 63614965 | 63614960 | ID=Msa0132550-mRNA-1:exon:21326;Parent=Msa0132550-mRNA-1 |
chr1_3 | exon | 63615747 | 63615959 | 63615747 | ID=Msa0132550-mRNA-1:exon:21327;Parent=Msa0132550-mRNA-1 |
chr1_3 | CDS | 63614660 | 63614665 | 63614660 | ID=Msa0132550-mRNA-1:cds;Parent=Msa0132550-mRNA-1 |
chr1_3 | CDS | 63614960 | 63614965 | 63614960 | ID=Msa0132550-mRNA-1:cds;Parent=Msa0132550-mRNA-1 |
chr1_3 | CDS | 63615747 | 63615959 | 63615747 | ID=Msa0132550-mRNA-1:cds;Parent=Msa0132550-mRNA-1 |
Gene Sequence |
Protein sequence |