Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136250 | XP_039685930.1 | 93.036 | 718 | 47 | 3 | 1 | 718 | 1 | 715 | 0.0 | 1292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136250 | A0A072VPU0 | 93.036 | 718 | 47 | 3 | 1 | 718 | 1 | 715 | 0.0 | 1292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089880 | Msa0136250 | 0.986610 | 2.291500e-167 | -8.615850e-47 |
| Msa0094780 | Msa0136250 | 0.817275 | 3.588050e-52 | -8.615850e-47 |
| Msa0136250 | Msa0225860 | 0.805887 | 1.074513e-49 | -8.615850e-47 |
| Msa0136250 | Msa0271880 | 0.806006 | 1.014332e-49 | -8.615850e-47 |
| Msa0136250 | Msa0310850 | 0.800039 | 1.737346e-48 | -8.615850e-47 |
| Msa0136250 | Msa0521020 | 0.800408 | 1.461759e-48 | -8.615850e-47 |
| Msa0136250 | Msa1192570 | 0.813345 | 2.682403e-51 | -8.615850e-47 |
| Msa0136250 | Msa1208950 | 0.801366 | 9.314387e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136250 | MtrunA17_Chr1g0207541 | 93.036 | 718 | 47 | 3 | 1 | 718 | 1 | 715 | 0.0 | 1292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136250 | AT1G49870.1 | 43.505 | 816 | 304 | 24 | 28 | 710 | 32 | 823 | 1.47e-166 | 500 |
| Msa0136250 | AT1G49870.2 | 43.467 | 796 | 298 | 23 | 48 | 710 | 9 | 785 | 1.82e-164 | 493 |
Find 162 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGACTTGAGTTCACTCTTT+TGG | 0.147983 | 1_3:+68085202 | None:intergenic |
| CGAAAATGATAATGTATTAT+TGG | 0.216712 | 1_3:+68086694 | None:intergenic |
| AGATGGGTTGGAGAAGATTT+TGG | 0.222969 | 1_3:-68084413 | Msa0136250:CDS |
| TCTATTTGACAATGCTTCTT+TGG | 0.229577 | 1_3:+68085486 | None:intergenic |
| ATAGAGACACCCTCTATTAT+TGG | 0.243317 | 1_3:-68085468 | Msa0136250:CDS |
| TTTGTTGATAACAAGGAATT+TGG | 0.250470 | 1_3:-68083680 | Msa0136250:three_prime_UTR |
| ACCTGATTTGGGAAGTATTC+TGG | 0.265806 | 1_3:-68084725 | Msa0136250:CDS |
| AGCAGAAGCTCAACTATTAA+TGG | 0.274480 | 1_3:-68085583 | Msa0136250:CDS |
| ATCAGAGTGCATACCTGATT+TGG | 0.276092 | 1_3:-68084737 | Msa0136250:CDS |
| GCAACTATAGTTGCAACTTA+TGG | 0.282964 | 1_3:-68085036 | Msa0136250:CDS |
| TTGCGCGGAAACCAGTTAAT+AGG | 0.308760 | 1_3:+68086088 | None:intergenic |
| CTTGGAGACATTAGGCTTCA+TGG | 0.316164 | 1_3:+68083976 | None:intergenic |
| CATAGGAATGAAACTAAATT+AGG | 0.316719 | 1_3:-68084796 | Msa0136250:CDS |
| AATAAATTGACGAAGGAATT+AGG | 0.317425 | 1_3:-68086181 | Msa0136250:CDS |
| GTAAAACTTCTCCTATTAAC+TGG | 0.318045 | 1_3:-68086099 | Msa0136250:CDS |
| TGAGAGTTTGGATAAAGTTT+TGG | 0.321510 | 1_3:-68084278 | Msa0136250:CDS |
| TAGGGTTACCTTTCCGATCT+TGG | 0.327646 | 1_3:+68086546 | None:intergenic |
| TGATGACTTTCATCTGTATC+AGG | 0.330426 | 1_3:+68085282 | None:intergenic |
| AAGAGTATTGAGGGAGAAAA+TGG | 0.331424 | 1_3:-68085868 | Msa0136250:CDS |
| GAGGAAAATTAAGATGCTTC+AGG | 0.332559 | 1_3:-68086044 | Msa0136250:intron |
| AACAACATTTACACATTCAA+TGG | 0.333707 | 1_3:+68083655 | None:intergenic |
| GAGAGAGTTGGAAGAGGCCT+GGG | 0.345934 | 1_3:-68084020 | Msa0136250:CDS |
| CTTGCTGGAAAATTAATTGC+TGG | 0.359085 | 1_3:+68084967 | None:intergenic |
| CTAATTTAGTTTCATTCCTA+TGG | 0.359167 | 1_3:+68084797 | None:intergenic |
| ACCTCGCGGCGCGTAAAATT+CGG | 0.362205 | 1_3:+68085778 | None:intergenic |
| AACTTCGCCCCATTCATTCC+CGG | 0.377250 | 1_3:+68084216 | None:intergenic |
| TTCTTGCTTTCTAGGCTGCC+TGG | 0.377702 | 1_3:-68083787 | Msa0136250:intron |
| CTTCATTTGTCTCCTCCAAC+TGG | 0.380965 | 1_3:+68084173 | None:intergenic |
| CTGCTTTGGTGGAGGCATCT+TGG | 0.382132 | 1_3:-68085803 | Msa0136250:CDS |
| TGGTGGTCTGGACCAAGTTT+TGG | 0.384713 | 1_3:-68084143 | Msa0136250:CDS |
| TCTCTTTCCAATCTATGTGC+TGG | 0.386049 | 1_3:+68084385 | None:intergenic |
| GGTAAAGCCAGCACATAGAT+TGG | 0.389122 | 1_3:-68084392 | Msa0136250:CDS |
| AATGACGACATTCTTCTTGC+TGG | 0.390183 | 1_3:+68084952 | None:intergenic |
| TCTCCTCCAACTGGTTATTT+CGG | 0.390573 | 1_3:+68084182 | None:intergenic |
| GGAGGCTCGAAGAGCTGCTT+TGG | 0.392310 | 1_3:-68085817 | Msa0136250:CDS |
| TCTCATATTCAGGAAGTAGA+TGG | 0.396955 | 1_3:-68085942 | Msa0136250:intron |
| CTGTGGCTCGCCGCAAGGCA+AGG | 0.400658 | 1_3:-68084045 | Msa0136250:CDS |
| AAAAGTTATCGTCACAAATC+AGG | 0.404328 | 1_3:-68086135 | Msa0136250:CDS |
| ACAATGCTTCTTTGGACAAT+CGG | 0.405172 | 1_3:+68085494 | None:intergenic |
| AGCAAGAAGAATGTCGTCAT+TGG | 0.406742 | 1_3:-68084950 | Msa0136250:CDS |
| TGGAAAATTAATTGCTGGAT+TGG | 0.407077 | 1_3:+68084972 | None:intergenic |
| AACCTTGTCTTGTTCAAGCT+TGG | 0.407936 | 1_3:+68083958 | None:intergenic |
| GAGGTAGGAGAACGAGGAAG+AGG | 0.408997 | 1_3:+68086580 | None:intergenic |
| AATTCATCTTTACTAAATGA+AGG | 0.411210 | 1_3:+68085336 | None:intergenic |
| CGAAGATGAACTTTCTTCTC+TGG | 0.411329 | 1_3:-68085058 | Msa0136250:CDS |
| TGTTCAAGCTTGGAGACATT+AGG | 0.412725 | 1_3:+68083968 | None:intergenic |
| GATTCCAAGATATCATTTCC+AGG | 0.413402 | 1_3:-68085171 | Msa0136250:CDS |
| TTGAGCTTCTGCTTCATCAC+TGG | 0.417482 | 1_3:+68085593 | None:intergenic |
| ACCAGAATACTTCCCAAATC+AGG | 0.421631 | 1_3:+68084724 | None:intergenic |
| GGAAAATTAATTGCTGGATT+GGG | 0.421777 | 1_3:+68084973 | None:intergenic |
| TGTGTCCGAATGTGAGAGTT+TGG | 0.423140 | 1_3:-68084290 | Msa0136250:CDS |
| TTATGGTTTAAATGCTGCCT+TGG | 0.429011 | 1_3:-68085019 | Msa0136250:CDS |
| AATCCCTGGAAATGATATCT+TGG | 0.433501 | 1_3:+68085167 | None:intergenic |
| TGAAGAAGGTGGTGGTGGTC+TGG | 0.438089 | 1_3:-68084155 | Msa0136250:CDS |
| TCAGAGTGCATACCTGATTT+GGG | 0.438474 | 1_3:-68084736 | Msa0136250:CDS |
| CAATGCTTCTTTGGACAATC+GGG | 0.443605 | 1_3:+68085495 | None:intergenic |
| TGAAGGGCGTGTTGCAAGCT+TGG | 0.443827 | 1_3:+68085353 | None:intergenic |
| AGAGAGAGTTGGAAGAGGCC+TGG | 0.451231 | 1_3:-68084021 | Msa0136250:CDS |
| AGGCCTTACCACAGGGAAGC+CGG | 0.455899 | 1_3:-68084354 | Msa0136250:CDS |
| GGTTAAGCACGTGTCTAGGC+TGG | 0.456379 | 1_3:-68084257 | Msa0136250:CDS |
| AAATAAAGACCGGGAATGAA+TGG | 0.457096 | 1_3:-68084225 | Msa0136250:CDS |
| AAGTGCAACTGAAGCTTTCG+AGG | 0.457632 | 1_3:-68085553 | Msa0136250:CDS |
| ACATGTCTCAAGACTTGAAA+AGG | 0.459009 | 1_3:-68084557 | Msa0136250:CDS |
| TTTCGAGGCAGCTGAGGCTA+TGG | 0.459678 | 1_3:-68085538 | Msa0136250:CDS |
| ACGAGGAAGAGGAGGAGAAT+CGG | 0.462914 | 1_3:+68086591 | None:intergenic |
| GGCTCGAAGAGCTGCTTTGG+TGG | 0.464293 | 1_3:-68085814 | Msa0136250:CDS |
| ATGATAGAAGAAAACAAAGA+TGG | 0.467169 | 1_3:-68084430 | Msa0136250:CDS |
| TTTATCCAAACTCTCACATT+CGG | 0.471101 | 1_3:+68084285 | None:intergenic |
| TGATTCTTCTCCAATAATAG+AGG | 0.472032 | 1_3:+68085458 | None:intergenic |
| ATTTATGTTTAACCAAAACT+TGG | 0.473566 | 1_3:+68084131 | None:intergenic |
| CGCATTATTCAAGAGTATTG+AGG | 0.475279 | 1_3:-68085878 | Msa0136250:CDS |
| GGCCTTACCACAGGGAAGCC+GGG | 0.482227 | 1_3:-68084353 | Msa0136250:CDS |
| ATTGGAAAGAGAAAAGTTGC+AGG | 0.484009 | 1_3:-68084374 | Msa0136250:CDS |
| CTCAGCTTCAGCTTTAATCC+AGG | 0.486257 | 1_3:+68083769 | None:intergenic |
| GTAGGAGAACGAGGAAGAGG+AGG | 0.488886 | 1_3:+68086583 | None:intergenic |
| AGAAGAAAACAAAGATGGGT+TGG | 0.488981 | 1_3:-68084425 | Msa0136250:CDS |
| CTTGGATGGAACATCGAGAA+AGG | 0.489214 | 1_3:-68084911 | Msa0136250:CDS |
| AATAAAGACCGGGAATGAAT+GGG | 0.490163 | 1_3:-68084224 | Msa0136250:CDS |
| TAATGCTTCACCAGAAGAAA+AGG | 0.490641 | 1_3:+68084480 | None:intergenic |
| AGCTCTTGTAAATCTGTTGA+TGG | 0.490869 | 1_3:-68084766 | Msa0136250:CDS |
| GCAAGAAGAATGTCGTCATT+GGG | 0.491869 | 1_3:-68084949 | Msa0136250:CDS |
| AATTGCTGGATTGGGCTGCT+TGG | 0.499178 | 1_3:+68084981 | None:intergenic |
| TGAGCTTCTGCTTCATCACT+GGG | 0.500824 | 1_3:+68085594 | None:intergenic |
| GCATTATTCAAGAGTATTGA+GGG | 0.503484 | 1_3:-68085877 | Msa0136250:CDS |
| GGATTATTGAGAGGAAAAGT+AGG | 0.504435 | 1_3:-68085149 | Msa0136250:CDS |
| AAGACTTGAAAAGGAAGTTC+AGG | 0.505605 | 1_3:-68084548 | Msa0136250:CDS |
| AAAGATCACACAGAAGTACT+AGG | 0.509209 | 1_3:-68084601 | Msa0136250:CDS |
| AACCCGGCTTCCCTGTGGTA+AGG | 0.509284 | 1_3:+68084351 | None:intergenic |
| CTTTCTCGATGTTCCATCCA+AGG | 0.515891 | 1_3:+68084912 | None:intergenic |
| TGAACTCAAGTCTGAAGACT+TGG | 0.518865 | 1_3:-68085193 | Msa0136250:CDS |
| CAAGGCAAGGGAGAGAGAGT+TGG | 0.522099 | 1_3:-68084032 | Msa0136250:CDS |
| AAAGTTGCAGGCCTTACCAC+AGG | 0.522299 | 1_3:-68084362 | Msa0136250:CDS |
| TCAATACTCTTGAATAATGC+GGG | 0.525190 | 1_3:+68085880 | None:intergenic |
| AGCTAGAGAAGCAGCACACA+AGG | 0.526135 | 1_3:-68085844 | Msa0136250:CDS |
| TGAAAATAGAATAAAACTTG+TGG | 0.526849 | 1_3:-68085112 | Msa0136250:CDS |
| AACTTCTTTGTCTACATCAA+AGG | 0.529869 | 1_3:+68085401 | None:intergenic |
| TGATACAGATGAAAGTCATC+AGG | 0.531714 | 1_3:-68085280 | Msa0136250:CDS |
| TGATAGAAGAAAACAAAGAT+GGG | 0.532548 | 1_3:-68084429 | Msa0136250:CDS |
| CATTTCCAGGGATTATTGAG+AGG | 0.535528 | 1_3:-68085158 | Msa0136250:CDS |
| TCGAAGAGCTGCTTTGGTGG+AGG | 0.538284 | 1_3:-68085811 | Msa0136250:CDS |
| TGTGGCTCGCCGCAAGGCAA+GGG | 0.538751 | 1_3:-68084044 | Msa0136250:CDS |
| TCCTAAGCTCAATCCTCCCC+AGG | 0.539113 | 1_3:+68084003 | None:intergenic |
| ATTCATCTTTACTAAATGAA+GGG | 0.540162 | 1_3:+68085337 | None:intergenic |
| GCCTGGGGAGGATTGAGCTT+AGG | 0.544200 | 1_3:-68084004 | Msa0136250:CDS |
| TTCGAGGCAGCTGAGGCTAT+GGG | 0.544887 | 1_3:-68085537 | Msa0136250:CDS |
| GAATGAAACTAAATTAGGTA+AGG | 0.544978 | 1_3:-68084791 | Msa0136250:CDS |
| CTCAATACTCTTGAATAATG+CGG | 0.547525 | 1_3:+68085879 | None:intergenic |
| TTGCGAAAGTCAGCCTTGGA+TGG | 0.549215 | 1_3:-68084925 | Msa0136250:CDS |
| AGAAGCAGCACACAAGGCAA+TGG | 0.550484 | 1_3:-68085838 | Msa0136250:CDS |
| GGGATTGCGAAAGTCAGCCT+TGG | 0.552736 | 1_3:-68084929 | Msa0136250:CDS |
| TCTCATCTTTGTTGATAACA+AGG | 0.555873 | 1_3:-68083687 | Msa0136250:three_prime_UTR |
| ACAAATGAAGAAGGTGGTGG+TGG | 0.556403 | 1_3:-68084160 | Msa0136250:CDS |
| GATGACTTTCATCTGTATCA+GGG | 0.556725 | 1_3:+68085283 | None:intergenic |
| AAGAGGAGGAGAATCGGAAT+CGG | 0.556799 | 1_3:+68086597 | None:intergenic |
| AAGGGAGAGAGAGTTGGAAG+AGG | 0.560162 | 1_3:-68084026 | Msa0136250:CDS |
| GAGAAGGAGAAAATAAAGAC+CGG | 0.561086 | 1_3:-68084235 | Msa0136250:CDS |
| GCACGTGTCTAGGCTGGAGA+AGG | 0.562735 | 1_3:-68084251 | Msa0136250:CDS |
| GGTATTCTGCACTTCAGCCA+AGG | 0.563744 | 1_3:+68085002 | None:intergenic |
| CTCCAAGCTTGAACAAGACA+AGG | 0.570406 | 1_3:-68083960 | Msa0136250:intron |
| ATTCCAAGATATCATTTCCA+GGG | 0.570612 | 1_3:-68085170 | Msa0136250:CDS |
| TTGGATGGAACATCGAGAAA+GGG | 0.571120 | 1_3:-68084910 | Msa0136250:CDS |
| AAATCAGGTATGCACTCTGA+TGG | 0.571370 | 1_3:+68084739 | None:intergenic |
| TTAGGTCAATCTACATCAAG+TGG | 0.579696 | 1_3:-68086163 | Msa0136250:CDS |
| AAGTCAGCAAAGGAAATGCT+AGG | 0.580927 | 1_3:-68084652 | Msa0136250:CDS |
| TCGGTGGAGTGATTCGTTGA+CGG | 0.581185 | 1_3:+68086616 | None:intergenic |
| AAGTGGATTCCTTCTTGGAG+AGG | 0.582173 | 1_3:-68086063 | Msa0136250:CDS |
| TTTGAGAATGAAGAGAACGA+TGG | 0.583104 | 1_3:+68086726 | None:intergenic |
| TCCTCTGTCAGATCCAAGAT+CGG | 0.585811 | 1_3:-68086559 | Msa0136250:CDS |
| TCACCGAAATAACCAGTTGG+AGG | 0.589084 | 1_3:-68084185 | Msa0136250:CDS |
| AGCAGCACACAAGGCAATGG+AGG | 0.589770 | 1_3:-68085835 | Msa0136250:CDS |
| AGGAGGAGAATCGGAATCGG+TGG | 0.591234 | 1_3:+68086600 | None:intergenic |
| TACAAACAAAGAAAGAGTCA+TGG | 0.594320 | 1_3:-68084322 | Msa0136250:CDS |
| AGAGAGTTGGAAGAGGCCTG+GGG | 0.597332 | 1_3:-68084019 | Msa0136250:CDS |
| TTGGAGGAGACAAATGAAGA+AGG | 0.601613 | 1_3:-68084169 | Msa0136250:CDS |
| GAGACAAATGAAGAAGGTGG+TGG | 0.603559 | 1_3:-68084163 | Msa0136250:CDS |
| AGCAAAGACTAAGTCAGCAA+AGG | 0.612039 | 1_3:-68084662 | Msa0136250:CDS |
| TCCGATCTTGGATCTGACAG+AGG | 0.612104 | 1_3:+68086558 | None:intergenic |
| TTAAAGCTGAAGCTGAGGAA+AGG | 0.616555 | 1_3:-68083763 | Msa0136250:CDS |
| CTGGATTAAAGCTGAAGCTG+AGG | 0.623687 | 1_3:-68083768 | Msa0136250:CDS |
| TTTGTTTGTAGTTTACAACC+CGG | 0.624513 | 1_3:+68084335 | None:intergenic |
| TGAAGCTTTCGAGGCAGCTG+AGG | 0.626348 | 1_3:-68085544 | Msa0136250:CDS |
| TTGGATCTGACAGAGGAGGT+AGG | 0.627509 | 1_3:+68086565 | None:intergenic |
| AGAAGGAGAAAATAAAGACC+GGG | 0.630842 | 1_3:-68084234 | Msa0136250:CDS |
| ACTCTCTCTCCCTTGCCTTG+CGG | 0.631262 | 1_3:+68084035 | None:intergenic |
| ACAGAGGAGGTAGGAGAACG+AGG | 0.631376 | 1_3:+68086574 | None:intergenic |
| GAGGAGACAAATGAAGAAGG+TGG | 0.632733 | 1_3:-68084166 | Msa0136250:CDS |
| GATTCTTCTCCAATAATAGA+GGG | 0.635892 | 1_3:+68085459 | None:intergenic |
| CATGACAAGACTTGAAAGAG+AGG | 0.639854 | 1_3:-68084839 | Msa0136250:CDS |
| TGAGGAAAGGAAGCAAGCAA+TGG | 0.648935 | 1_3:-68083750 | Msa0136250:CDS |
| GAGTTGGAAGAGGCCTGGGG+AGG | 0.655185 | 1_3:-68084016 | Msa0136250:CDS |
| AAGTTGCAGGCCTTACCACA+GGG | 0.659562 | 1_3:-68084361 | Msa0136250:CDS |
| GCATCAAGTGGCATGCCTAG+AGG | 0.665651 | 1_3:-68084628 | Msa0136250:CDS |
| GGAACATCGAGAAAGGGTCA+AGG | 0.669835 | 1_3:-68084904 | Msa0136250:CDS |
| ATAAAGACCGGGAATGAATG+GGG | 0.672017 | 1_3:-68084223 | Msa0136250:CDS |
| AAGTCACCGAAATAACCAGT+TGG | 0.673763 | 1_3:-68084188 | Msa0136250:CDS |
| TGTCAGATCCAAGATCGGAA+AGG | 0.677182 | 1_3:-68086554 | Msa0136250:intron |
| TGTGCAGAATAAATTGACGA+AGG | 0.678945 | 1_3:-68086188 | Msa0136250:intron |
| TTTACAACCCGGCTTCCCTG+TGG | 0.683710 | 1_3:+68084346 | None:intergenic |
| GATCTTGGATCTGACAGAGG+AGG | 0.695341 | 1_3:+68086561 | None:intergenic |
| GAAATGCTAGGAGCATCAAG+TGG | 0.709128 | 1_3:-68084640 | Msa0136250:CDS |
| TTGTGGATATGATGATTGAG+CGG | 0.720856 | 1_3:-68085095 | Msa0136250:CDS |
| AGAAGTACTAGGCTTAGACA+AGG | 0.745820 | 1_3:-68084590 | Msa0136250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAAAATTGATATTTA+AGG | + | chr1_3:68083843-68083862 | None:intergenic | 10.0% |
| !! | TTATATTTATAAAGCTAAAT+TGG | - | chr1_3:68084043-68084062 | Msa0136250:CDS | 10.0% |
| !! | CAAAAAGAAAAAATTAAAAT+GGG | + | chr1_3:68086469-68086488 | None:intergenic | 10.0% |
| !!! | CAATAATACATTATCATTTT+CGG | - | chr1_3:68083657-68083676 | Msa0136250:three_prime_UTR | 15.0% |
| !! | TAAAATTGATATTTAAGGAA+TGG | + | chr1_3:68083838-68083857 | None:intergenic | 15.0% |
| !! | GCAAAAAGAAAAAATTAAAA+TGG | + | chr1_3:68086470-68086489 | None:intergenic | 15.0% |
| !!! | CGAAAATGATAATGTATTAT+TGG | + | chr1_3:68083659-68083678 | None:intergenic | 20.0% |
| !! | AATTGAAACTCATCAATTTA+GGG | + | chr1_3:68083898-68083917 | None:intergenic | 20.0% |
| !! | AATATAACAAGTAATCTCTA+AGG | + | chr1_3:68084030-68084049 | None:intergenic | 20.0% |
| !! | AAGCTTAATGCAAATAAAAT+AGG | - | chr1_3:68084596-68084615 | Msa0136250:CDS | 20.0% |
| !!! | ATTTACAAATCTTTGAAAAC+AGG | - | chr1_3:68084654-68084673 | Msa0136250:CDS | 20.0% |
| !! | ATTCATCTTTACTAAATGAA+GGG | + | chr1_3:68085016-68085035 | None:intergenic | 20.0% |
| !! | AATTCATCTTTACTAAATGA+AGG | + | chr1_3:68085017-68085036 | None:intergenic | 20.0% |
| !! | TGAAAATAGAATAAAACTTG+TGG | - | chr1_3:68085238-68085257 | Msa0136250:CDS | 20.0% |
| !! | GCTTAACTAAAAATTTATCT+AGG | + | chr1_3:68085490-68085509 | None:intergenic | 20.0% |
| !! | ATTTATGTTTAACCAAAACT+TGG | + | chr1_3:68086222-68086241 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTGCTTTCT+AGG | - | chr1_3:68086555-68086574 | Msa0136250:CDS | 20.0% |
| !! | GTAATCAGAATTTTCAACAA+TGG | - | chr1_3:68083691-68083710 | Msa0136250:three_prime_UTR | 25.0% |
| ! | AATTGATATTTAAGGAATGG+TGG | + | chr1_3:68083835-68083854 | None:intergenic | 25.0% |
| !!! | ATCAATTTAGGGTTTTGAAT+CGG | + | chr1_3:68083887-68083906 | None:intergenic | 25.0% |
| ! | CAATTGAAACTCATCAATTT+AGG | + | chr1_3:68083899-68083918 | None:intergenic | 25.0% |
| ! | AACAAACTATGATCTATATC+TGG | + | chr1_3:68083932-68083951 | None:intergenic | 25.0% |
| ! | AATAAATTGACGAAGGAATT+AGG | - | chr1_3:68084169-68084188 | Msa0136250:CDS | 25.0% |
| !! | AGTTAATAGGAGAAGTTTTA+CGG | + | chr1_3:68084252-68084271 | None:intergenic | 25.0% |
| ! | TTAATGCAAATAAAATAGGC+TGG | - | chr1_3:68084600-68084619 | Msa0136250:CDS | 25.0% |
| ! | AAACCATATTGAAAGTTATG+TGG | - | chr1_3:68084677-68084696 | Msa0136250:CDS | 25.0% |
| ! | GTAAACACCAATAAAATTCT+CGG | + | chr1_3:68084730-68084749 | None:intergenic | 25.0% |
| !!! | AGAATTTTATTGGTGTTTAC+AGG | - | chr1_3:68084730-68084749 | Msa0136250:CDS | 25.0% |
| ! | ACTAAAAATTTATCTAGGCT+AGG | + | chr1_3:68085485-68085504 | None:intergenic | 25.0% |
| !! | CTAATTTAGTTTCATTCCTA+TGG | + | chr1_3:68085556-68085575 | None:intergenic | 25.0% |
| ! | CATAGGAATGAAACTAAATT+AGG | - | chr1_3:68085554-68085573 | Msa0136250:CDS | 25.0% |
| ! | GAATGAAACTAAATTAGGTA+AGG | - | chr1_3:68085559-68085578 | Msa0136250:CDS | 25.0% |
| ! | ATGATAGAAGAAAACAAAGA+TGG | - | chr1_3:68085920-68085939 | Msa0136250:CDS | 25.0% |
| ! | TGATAGAAGAAAACAAAGAT+GGG | - | chr1_3:68085921-68085940 | Msa0136250:CDS | 25.0% |
| !!! | TTTGTTGATAACAAGGAATT+TGG | - | chr1_3:68086670-68086689 | Msa0136250:five_prime_UTR | 25.0% |
| ! | AACAACATTTACACATTCAA+TGG | + | chr1_3:68086698-68086717 | None:intergenic | 25.0% |
| ! | ATATTTAAGGAATGGTGGAA+TGG | + | chr1_3:68083830-68083849 | None:intergenic | 30.0% |
| ! | TTGATAGTTTAGGGACTAAA+TGG | - | chr1_3:68084073-68084092 | Msa0136250:CDS | 30.0% |
| AAAAGTTATCGTCACAAATC+AGG | - | chr1_3:68084215-68084234 | Msa0136250:CDS | 30.0% | |
| GTAAAACTTCTCCTATTAAC+TGG | - | chr1_3:68084251-68084270 | Msa0136250:CDS | 30.0% | |
| ! | AAATTAAGATGCTTCAGGTT+TGG | - | chr1_3:68084311-68084330 | Msa0136250:CDS | 30.0% |
| GATATACGTTTCTCATATTC+AGG | - | chr1_3:68084398-68084417 | Msa0136250:CDS | 30.0% | |
| TCAATACTCTTGAATAATGC+GGG | + | chr1_3:68084473-68084492 | None:intergenic | 30.0% | |
| CTCAATACTCTTGAATAATG+CGG | + | chr1_3:68084474-68084493 | None:intergenic | 30.0% | |
| !! | GCATTATTCAAGAGTATTGA+GGG | - | chr1_3:68084473-68084492 | Msa0136250:CDS | 30.0% |
| TTGCCACATAACTTTCAATA+TGG | + | chr1_3:68084683-68084702 | None:intergenic | 30.0% | |
| ! | CTGAAAACCGAGAATTTTAT+TGG | - | chr1_3:68084720-68084739 | Msa0136250:CDS | 30.0% |
| TCTATTTGACAATGCTTCTT+TGG | + | chr1_3:68084867-68084886 | None:intergenic | 30.0% | |
| GATTCTTCTCCAATAATAGA+GGG | + | chr1_3:68084894-68084913 | None:intergenic | 30.0% | |
| TGATTCTTCTCCAATAATAG+AGG | + | chr1_3:68084895-68084914 | None:intergenic | 30.0% | |
| AACTTCTTTGTCTACATCAA+AGG | + | chr1_3:68084952-68084971 | None:intergenic | 30.0% | |
| ATTCCAAGATATCATTTCCA+GGG | - | chr1_3:68085180-68085199 | Msa0136250:CDS | 30.0% | |
| GGAAAATTAATTGCTGGATT+GGG | + | chr1_3:68085380-68085399 | None:intergenic | 30.0% | |
| TGGAAAATTAATTGCTGGAT+TGG | + | chr1_3:68085381-68085400 | None:intergenic | 30.0% | |
| ! | TTCATTCCTATGGTTTTTCT+TGG | + | chr1_3:68085546-68085565 | None:intergenic | 30.0% |
| ! | TCTCAAACTTTTGTTCTCAT+TGG | + | chr1_3:68085846-68085865 | None:intergenic | 30.0% |
| TTTGTTTGTAGTTTACAACC+CGG | + | chr1_3:68086018-68086037 | None:intergenic | 30.0% | |
| TACAAACAAAGAAAGAGTCA+TGG | - | chr1_3:68086028-68086047 | Msa0136250:intron | 30.0% | |
| TTTATCCAAACTCTCACATT+CGG | + | chr1_3:68086068-68086087 | None:intergenic | 30.0% | |
| ! | TGAGAGTTTGGATAAAGTTT+TGG | - | chr1_3:68086072-68086091 | Msa0136250:CDS | 30.0% |
| !!! | TAACCCAATTAGTTTTTCTG+TGG | - | chr1_3:68086288-68086307 | Msa0136250:intron | 30.0% |
| !! | TCTCATCTTTGTTGATAACA+AGG | - | chr1_3:68086663-68086682 | Msa0136250:five_prime_UTR | 30.0% |
| TTTGAGAATGAAGAGAACGA+TGG | + | chr1_3:68083627-68083646 | None:intergenic | 35.0% | |
| !! | TGGAGAGATGTTGATAGTTT+AGG | - | chr1_3:68084063-68084082 | Msa0136250:CDS | 35.0% |
| !! | GGAGAGATGTTGATAGTTTA+GGG | - | chr1_3:68084064-68084083 | Msa0136250:CDS | 35.0% |
| TAGTTTAGGGACTAAATGGA+TGG | - | chr1_3:68084077-68084096 | Msa0136250:CDS | 35.0% | |
| TGTGCAGAATAAATTGACGA+AGG | - | chr1_3:68084162-68084181 | Msa0136250:CDS | 35.0% | |
| TTAGGTCAATCTACATCAAG+TGG | - | chr1_3:68084187-68084206 | Msa0136250:CDS | 35.0% | |
| ! | CAAAAAAGTGGATTCCTTCT+TGG | - | chr1_3:68084282-68084301 | Msa0136250:CDS | 35.0% |
| ! | CTTAATTTTCCTCTCCAAGA+AGG | + | chr1_3:68084299-68084318 | None:intergenic | 35.0% |
| GAGGAAAATTAAGATGCTTC+AGG | - | chr1_3:68084306-68084325 | Msa0136250:CDS | 35.0% | |
| TCTCATATTCAGGAAGTAGA+TGG | - | chr1_3:68084408-68084427 | Msa0136250:CDS | 35.0% | |
| !! | CGCATTATTCAAGAGTATTG+AGG | - | chr1_3:68084472-68084491 | Msa0136250:CDS | 35.0% |
| !! | AAGAGTATTGAGGGAGAAAA+TGG | - | chr1_3:68084482-68084501 | Msa0136250:CDS | 35.0% |
| AGCAGAAGCTCAACTATTAA+TGG | - | chr1_3:68084767-68084786 | Msa0136250:CDS | 35.0% | |
| ACAATGCTTCTTTGGACAAT+CGG | + | chr1_3:68084859-68084878 | None:intergenic | 35.0% | |
| ATAGAGACACCCTCTATTAT+TGG | - | chr1_3:68084882-68084901 | Msa0136250:CDS | 35.0% | |
| GATGACTTTCATCTGTATCA+GGG | + | chr1_3:68085070-68085089 | None:intergenic | 35.0% | |
| TGATGACTTTCATCTGTATC+AGG | + | chr1_3:68085071-68085090 | None:intergenic | 35.0% | |
| TGATACAGATGAAAGTCATC+AGG | - | chr1_3:68085070-68085089 | Msa0136250:CDS | 35.0% | |
| ! | AGACTTGAGTTCACTCTTTT+GGG | + | chr1_3:68085150-68085169 | None:intergenic | 35.0% |
| GATTCCAAGATATCATTTCC+AGG | - | chr1_3:68085179-68085198 | Msa0136250:CDS | 35.0% | |
| AATCCCTGGAAATGATATCT+TGG | + | chr1_3:68085186-68085205 | None:intergenic | 35.0% | |
| GGATTATTGAGAGGAAAAGT+AGG | - | chr1_3:68085201-68085220 | Msa0136250:CDS | 35.0% | |
| TTGTGGATATGATGATTGAG+CGG | - | chr1_3:68085255-68085274 | Msa0136250:CDS | 35.0% | |
| GCAACTATAGTTGCAACTTA+TGG | - | chr1_3:68085314-68085333 | Msa0136250:CDS | 35.0% | |
| TTATGGTTTAAATGCTGCCT+TGG | - | chr1_3:68085331-68085350 | Msa0136250:CDS | 35.0% | |
| CTTGCTGGAAAATTAATTGC+TGG | + | chr1_3:68085386-68085405 | None:intergenic | 35.0% | |
| AGCTCTTGTAAATCTGTTGA+TGG | - | chr1_3:68085584-68085603 | Msa0136250:CDS | 35.0% | |
| !! | AAAGATCACACAGAAGTACT+AGG | - | chr1_3:68085749-68085768 | Msa0136250:intron | 35.0% |
| ACATGTCTCAAGACTTGAAA+AGG | - | chr1_3:68085793-68085812 | Msa0136250:CDS | 35.0% | |
| AAGACTTGAAAAGGAAGTTC+AGG | - | chr1_3:68085802-68085821 | Msa0136250:CDS | 35.0% | |
| TAATGCTTCACCAGAAGAAA+AGG | + | chr1_3:68085873-68085892 | None:intergenic | 35.0% | |
| AGAAGAAAACAAAGATGGGT+TGG | - | chr1_3:68085925-68085944 | Msa0136250:CDS | 35.0% | |
| ATTGGAAAGAGAAAAGTTGC+AGG | - | chr1_3:68085976-68085995 | Msa0136250:intron | 35.0% | |
| GAGAAGGAGAAAATAAAGAC+CGG | - | chr1_3:68086115-68086134 | Msa0136250:CDS | 35.0% | |
| AGAAGGAGAAAATAAAGACC+GGG | - | chr1_3:68086116-68086135 | Msa0136250:CDS | 35.0% | |
| AAATAAAGACCGGGAATGAA+TGG | - | chr1_3:68086125-68086144 | Msa0136250:CDS | 35.0% | |
| AATAAAGACCGGGAATGAAT+GGG | - | chr1_3:68086126-68086145 | Msa0136250:CDS | 35.0% | |
| GAGCCACAGAAAAACTAATT+GGG | + | chr1_3:68086294-68086313 | None:intergenic | 35.0% | |
| !! | TTTAGTGCTGTTTGACACTT+TGG | - | chr1_3:68086417-68086436 | Msa0136250:intron | 35.0% |
| ! | TAAGGAATGGTGGAATGGTA+GGG | + | chr1_3:68083825-68083844 | None:intergenic | 40.0% |
| ! | TTAAGGAATGGTGGAATGGT+AGG | + | chr1_3:68083826-68083845 | None:intergenic | 40.0% |
| !!! | GGGTTTTGAATCGGTAAACA+AGG | + | chr1_3:68083878-68083897 | None:intergenic | 40.0% |
| !!! | AAGGAATCCACTTTTTTGCG+CGG | + | chr1_3:68084280-68084299 | None:intergenic | 40.0% |
| TTGCATTAAGCTTTACCTCG+CGG | + | chr1_3:68084589-68084608 | None:intergenic | 40.0% | |
| ATAGGCTGGACATTAGTTGT+CGG | - | chr1_3:68084614-68084633 | Msa0136250:CDS | 40.0% | |
| CAATGCTTCTTTGGACAATC+GGG | + | chr1_3:68084858-68084877 | None:intergenic | 40.0% | |
| ! | CAGACTTGAGTTCACTCTTT+TGG | + | chr1_3:68085151-68085170 | None:intergenic | 40.0% |
| TGAACTCAAGTCTGAAGACT+TGG | - | chr1_3:68085157-68085176 | Msa0136250:CDS | 40.0% | |
| CATTTCCAGGGATTATTGAG+AGG | - | chr1_3:68085192-68085211 | Msa0136250:CDS | 40.0% | |
| ! | CTTTTCCTCTCAATAATCCC+TGG | + | chr1_3:68085200-68085219 | None:intergenic | 40.0% |
| CGAAGATGAACTTTCTTCTC+TGG | - | chr1_3:68085292-68085311 | Msa0136250:CDS | 40.0% | |
| AATGACGACATTCTTCTTGC+TGG | + | chr1_3:68085401-68085420 | None:intergenic | 40.0% | |
| AGCAAGAAGAATGTCGTCAT+TGG | - | chr1_3:68085400-68085419 | Msa0136250:CDS | 40.0% | |
| GCAAGAAGAATGTCGTCATT+GGG | - | chr1_3:68085401-68085420 | Msa0136250:CDS | 40.0% | |
| TTGGATGGAACATCGAGAAA+GGG | - | chr1_3:68085440-68085459 | Msa0136250:CDS | 40.0% | |
| CATGACAAGACTTGAAAGAG+AGG | - | chr1_3:68085511-68085530 | Msa0136250:CDS | 40.0% | |
| GTGAAGCCAAGAAAAACCAT+AGG | - | chr1_3:68085537-68085556 | Msa0136250:CDS | 40.0% | |
| AAATCAGGTATGCACTCTGA+TGG | + | chr1_3:68085614-68085633 | None:intergenic | 40.0% | |
| ATCAGAGTGCATACCTGATT+TGG | - | chr1_3:68085613-68085632 | Msa0136250:intron | 40.0% | |
| TCAGAGTGCATACCTGATTT+GGG | - | chr1_3:68085614-68085633 | Msa0136250:intron | 40.0% | |
| !! | ACCTGATTTGGGAAGTATTC+TGG | - | chr1_3:68085625-68085644 | Msa0136250:intron | 40.0% |
| ACCAGAATACTTCCCAAATC+AGG | + | chr1_3:68085629-68085648 | None:intergenic | 40.0% | |
| AGCAAAGACTAAGTCAGCAA+AGG | - | chr1_3:68085688-68085707 | Msa0136250:intron | 40.0% | |
| AAGTCAGCAAAGGAAATGCT+AGG | - | chr1_3:68085698-68085717 | Msa0136250:intron | 40.0% | |
| ! | GTGTGATCTTTTTGACCTCT+AGG | + | chr1_3:68085740-68085759 | None:intergenic | 40.0% |
| !! | AGAAGTACTAGGCTTAGACA+AGG | - | chr1_3:68085760-68085779 | Msa0136250:intron | 40.0% |
| !! | CTCATTGGCTGTTCTTTTTC+TGG | + | chr1_3:68085831-68085850 | None:intergenic | 40.0% |
| ! | TTGAGATCGACCTTTTCTTC+TGG | - | chr1_3:68085860-68085879 | Msa0136250:CDS | 40.0% |
| !!! | AGATGGGTTGGAGAAGATTT+TGG | - | chr1_3:68085937-68085956 | Msa0136250:intron | 40.0% |
| TCTCTTTCCAATCTATGTGC+TGG | + | chr1_3:68085968-68085987 | None:intergenic | 40.0% | |
| !! | TTTTGGTTAAGCACGTGTCT+AGG | - | chr1_3:68086089-68086108 | Msa0136250:CDS | 40.0% |
| ATAAAGACCGGGAATGAATG+GGG | - | chr1_3:68086127-68086146 | Msa0136250:CDS | 40.0% | |
| AAGTCACCGAAATAACCAGT+TGG | - | chr1_3:68086162-68086181 | Msa0136250:CDS | 40.0% | |
| TCTCCTCCAACTGGTTATTT+CGG | + | chr1_3:68086171-68086190 | None:intergenic | 40.0% | |
| TTGGAGGAGACAAATGAAGA+AGG | - | chr1_3:68086181-68086200 | Msa0136250:CDS | 40.0% | |
| ! | CATCTTTTCTCTCTCAAGTC+TGG | + | chr1_3:68086245-68086264 | None:intergenic | 40.0% |
| CGAGCCACAGAAAAACTAAT+TGG | + | chr1_3:68086295-68086314 | None:intergenic | 40.0% | |
| TGTTCAAGCTTGGAGACATT+AGG | + | chr1_3:68086385-68086404 | None:intergenic | 40.0% | |
| ! | AACCTTGTCTTGTTCAAGCT+TGG | + | chr1_3:68086395-68086414 | None:intergenic | 40.0% |
| TTAAAGCTGAAGCTGAGGAA+AGG | - | chr1_3:68086587-68086606 | Msa0136250:CDS | 40.0% | |
| AAGAGGAGGAGAATCGGAAT+CGG | + | chr1_3:68083756-68083775 | None:intergenic | 45.0% | |
| TCCTCTGTCAGATCCAAGAT+CGG | - | chr1_3:68083791-68083810 | Msa0136250:intron | 45.0% | |
| TGTCAGATCCAAGATCGGAA+AGG | - | chr1_3:68083796-68083815 | Msa0136250:intron | 45.0% | |
| TAGGGTTACCTTTCCGATCT+TGG | + | chr1_3:68083807-68083826 | None:intergenic | 45.0% | |
| ! | ATAGGAGAAGTTTTACGGCG+TGG | + | chr1_3:68084247-68084266 | None:intergenic | 45.0% |
| TTGCGCGGAAACCAGTTAAT+AGG | + | chr1_3:68084265-68084284 | None:intergenic | 45.0% | |
| ! | AAGTGGATTCCTTCTTGGAG+AGG | - | chr1_3:68084287-68084306 | Msa0136250:CDS | 45.0% |
| TGAGCTTCTGCTTCATCACT+GGG | + | chr1_3:68084759-68084778 | None:intergenic | 45.0% | |
| TTGAGCTTCTGCTTCATCAC+TGG | + | chr1_3:68084760-68084779 | None:intergenic | 45.0% | |
| AAGTGCAACTGAAGCTTTCG+AGG | - | chr1_3:68084797-68084816 | Msa0136250:CDS | 45.0% | |
| !!! | AGTTCACTCTTTTGGGACAC+TGG | + | chr1_3:68085143-68085162 | None:intergenic | 45.0% |
| CTTTCTCGATGTTCCATCCA+AGG | + | chr1_3:68085441-68085460 | None:intergenic | 45.0% | |
| CTTGGATGGAACATCGAGAA+AGG | - | chr1_3:68085439-68085458 | Msa0136250:CDS | 45.0% | |
| !! | GAAATGCTAGGAGCATCAAG+TGG | - | chr1_3:68085710-68085729 | Msa0136250:intron | 45.0% |
| GGTAAAGCCAGCACATAGAT+TGG | - | chr1_3:68085958-68085977 | Msa0136250:intron | 45.0% | |
| TGTGTCCGAATGTGAGAGTT+TGG | - | chr1_3:68086060-68086079 | Msa0136250:CDS | 45.0% | |
| TCACCGAAATAACCAGTTGG+AGG | - | chr1_3:68086165-68086184 | Msa0136250:CDS | 45.0% | |
| CTTCATTTGTCTCCTCCAAC+TGG | + | chr1_3:68086180-68086199 | None:intergenic | 45.0% | |
| GAGGAGACAAATGAAGAAGG+TGG | - | chr1_3:68086184-68086203 | Msa0136250:CDS | 45.0% | |
| GAGACAAATGAAGAAGGTGG+TGG | - | chr1_3:68086187-68086206 | Msa0136250:intron | 45.0% | |
| ! | ACAAATGAAGAAGGTGGTGG+TGG | - | chr1_3:68086190-68086209 | Msa0136250:intron | 45.0% |
| CTTGGAGACATTAGGCTTCA+TGG | + | chr1_3:68086377-68086396 | None:intergenic | 45.0% | |
| CTCCAAGCTTGAACAAGACA+AGG | - | chr1_3:68086390-68086409 | Msa0136250:intron | 45.0% | |
| ! | CTCAGCTTCAGCTTTAATCC+AGG | + | chr1_3:68086584-68086603 | None:intergenic | 45.0% |
| CTGGATTAAAGCTGAAGCTG+AGG | - | chr1_3:68086582-68086601 | Msa0136250:CDS | 45.0% | |
| TGAGGAAAGGAAGCAAGCAA+TGG | - | chr1_3:68086600-68086619 | Msa0136250:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAAAC+AGG | + | chr1_3:68086545-68086564 | None:intergenic | 5.0% |
| TCGGTGGAGTGATTCGTTGA+CGG | + | chr1_3:68083737-68083756 | None:intergenic | 50.0% | |
| ACGAGGAAGAGGAGGAGAAT+CGG | + | chr1_3:68083762-68083781 | None:intergenic | 50.0% | |
| TTGGATCTGACAGAGGAGGT+AGG | + | chr1_3:68083788-68083807 | None:intergenic | 50.0% | |
| GATCTTGGATCTGACAGAGG+AGG | + | chr1_3:68083792-68083811 | None:intergenic | 50.0% | |
| TCCGATCTTGGATCTGACAG+AGG | + | chr1_3:68083795-68083814 | None:intergenic | 50.0% | |
| CTGGTTTCCGCGCAAAAAAG+TGG | - | chr1_3:68084270-68084289 | Msa0136250:CDS | 50.0% | |
| AGCTAGAGAAGCAGCACACA+AGG | - | chr1_3:68084506-68084525 | Msa0136250:CDS | 50.0% | |
| AGAAGCAGCACACAAGGCAA+TGG | - | chr1_3:68084512-68084531 | Msa0136250:CDS | 50.0% | |
| GGTATTCTGCACTTCAGCCA+AGG | + | chr1_3:68085351-68085370 | None:intergenic | 50.0% | |
| ! | AATTGCTGGATTGGGCTGCT+TGG | + | chr1_3:68085372-68085391 | None:intergenic | 50.0% |
| TTGCGAAAGTCAGCCTTGGA+TGG | - | chr1_3:68085425-68085444 | Msa0136250:CDS | 50.0% | |
| GGAACATCGAGAAAGGGTCA+AGG | - | chr1_3:68085446-68085465 | Msa0136250:CDS | 50.0% | |
| AAAGTTGCAGGCCTTACCAC+AGG | - | chr1_3:68085988-68086007 | Msa0136250:intron | 50.0% | |
| AAGTTGCAGGCCTTACCACA+GGG | - | chr1_3:68085989-68086008 | Msa0136250:intron | 50.0% | |
| AACTTCGCCCCATTCATTCC+CGG | + | chr1_3:68086137-68086156 | None:intergenic | 50.0% | |
| ! | TGGTGGTCTGGACCAAGTTT+TGG | - | chr1_3:68086207-68086226 | Msa0136250:intron | 50.0% |
| AAGGGAGAGAGAGTTGGAAG+AGG | - | chr1_3:68086324-68086343 | Msa0136250:intron | 50.0% | |
| TTCTTGCTTTCTAGGCTGCC+TGG | - | chr1_3:68086563-68086582 | Msa0136250:CDS | 50.0% | |
| AGGAGGAGAATCGGAATCGG+TGG | + | chr1_3:68083753-68083772 | None:intergenic | 55.0% | |
| GTAGGAGAACGAGGAAGAGG+AGG | + | chr1_3:68083770-68083789 | None:intergenic | 55.0% | |
| GAGGTAGGAGAACGAGGAAG+AGG | + | chr1_3:68083773-68083792 | None:intergenic | 55.0% | |
| ACAGAGGAGGTAGGAGAACG+AGG | + | chr1_3:68083779-68083798 | None:intergenic | 55.0% | |
| ! | GGAGAAGTTTTACGGCGTGG+AGG | + | chr1_3:68084244-68084263 | None:intergenic | 55.0% |
| AGCAGCACACAAGGCAATGG+AGG | - | chr1_3:68084515-68084534 | Msa0136250:CDS | 55.0% | |
| ! | TCGAAGAGCTGCTTTGGTGG+AGG | - | chr1_3:68084539-68084558 | Msa0136250:CDS | 55.0% |
| !! | CTGCTTTGGTGGAGGCATCT+TGG | - | chr1_3:68084547-68084566 | Msa0136250:CDS | 55.0% |
| ACCTCGCGGCGCGTAAAATT+CGG | + | chr1_3:68084575-68084594 | None:intergenic | 55.0% | |
| TGAAGCTTTCGAGGCAGCTG+AGG | - | chr1_3:68084806-68084825 | Msa0136250:CDS | 55.0% | |
| TTTCGAGGCAGCTGAGGCTA+TGG | - | chr1_3:68084812-68084831 | Msa0136250:CDS | 55.0% | |
| TTCGAGGCAGCTGAGGCTAT+GGG | - | chr1_3:68084813-68084832 | Msa0136250:CDS | 55.0% | |
| ! | TGAAGGGCGTGTTGCAAGCT+TGG | + | chr1_3:68085000-68085019 | None:intergenic | 55.0% |
| GGGATTGCGAAAGTCAGCCT+TGG | - | chr1_3:68085421-68085440 | Msa0136250:CDS | 55.0% | |
| GCATCAAGTGGCATGCCTAG+AGG | - | chr1_3:68085722-68085741 | Msa0136250:intron | 55.0% | |
| TTTACAACCCGGCTTCCCTG+TGG | + | chr1_3:68086007-68086026 | None:intergenic | 55.0% | |
| GGTTAAGCACGTGTCTAGGC+TGG | - | chr1_3:68086093-68086112 | Msa0136250:CDS | 55.0% | |
| !! | TGAAGAAGGTGGTGGTGGTC+TGG | - | chr1_3:68086195-68086214 | Msa0136250:intron | 55.0% |
| ! | TTTTTCTGTGGCTCGCCGCA+AGG | - | chr1_3:68086300-68086319 | Msa0136250:intron | 55.0% |
| ACTCTCTCTCCCTTGCCTTG+CGG | + | chr1_3:68086318-68086337 | None:intergenic | 55.0% | |
| CAAGGCAAGGGAGAGAGAGT+TGG | - | chr1_3:68086318-68086337 | Msa0136250:intron | 55.0% | |
| AGAGAGAGTTGGAAGAGGCC+TGG | - | chr1_3:68086329-68086348 | Msa0136250:intron | 55.0% | |
| GAGAGAGTTGGAAGAGGCCT+GGG | - | chr1_3:68086330-68086349 | Msa0136250:intron | 55.0% | |
| AGAGAGTTGGAAGAGGCCTG+GGG | - | chr1_3:68086331-68086350 | Msa0136250:intron | 55.0% | |
| TCCTAAGCTCAATCCTCCCC+AGG | + | chr1_3:68086350-68086369 | None:intergenic | 55.0% | |
| GGAGGCTCGAAGAGCTGCTT+TGG | - | chr1_3:68084533-68084552 | Msa0136250:CDS | 60.0% | |
| ! | GGCTCGAAGAGCTGCTTTGG+TGG | - | chr1_3:68084536-68084555 | Msa0136250:CDS | 60.0% |
| AGGCCTTACCACAGGGAAGC+CGG | - | chr1_3:68085996-68086015 | Msa0136250:intron | 60.0% | |
| AACCCGGCTTCCCTGTGGTA+AGG | + | chr1_3:68086002-68086021 | None:intergenic | 60.0% | |
| GCACGTGTCTAGGCTGGAGA+AGG | - | chr1_3:68086099-68086118 | Msa0136250:CDS | 60.0% | |
| GCCTGGGGAGGATTGAGCTT+AGG | - | chr1_3:68086346-68086365 | Msa0136250:intron | 60.0% | |
| ! | GCCGAATTTTACGCGCCGCG+AGG | - | chr1_3:68084571-68084590 | Msa0136250:CDS | 65.0% |
| GGCCTTACCACAGGGAAGCC+GGG | - | chr1_3:68085997-68086016 | Msa0136250:intron | 65.0% | |
| TGTGGCTCGCCGCAAGGCAA+GGG | - | chr1_3:68086306-68086325 | Msa0136250:intron | 65.0% | |
| GAGTTGGAAGAGGCCTGGGG+AGG | - | chr1_3:68086334-68086353 | Msa0136250:intron | 65.0% | |
| CTGTGGCTCGCCGCAAGGCA+AGG | - | chr1_3:68086305-68086324 | Msa0136250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 68083617 | 68086755 | 68083617 | ID=Msa0136250;Name=Msa0136250 |
| chr1_3 | mRNA | 68083617 | 68086755 | 68083617 | ID=Msa0136250-mRNA-1;Parent=Msa0136250;Name=Msa0136250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=93|1|1|1|1|1|5|122|718 |
| chr1_3 | exon | 68083617 | 68083795 | 68083617 | ID=Msa0136250-mRNA-1:exon:23468;Parent=Msa0136250-mRNA-1 |
| chr1_3 | exon | 68083961 | 68085620 | 68083961 | ID=Msa0136250-mRNA-1:exon:23467;Parent=Msa0136250-mRNA-1 |
| chr1_3 | exon | 68085780 | 68085952 | 68085780 | ID=Msa0136250-mRNA-1:exon:23466;Parent=Msa0136250-mRNA-1 |
| chr1_3 | exon | 68086045 | 68086203 | 68086045 | ID=Msa0136250-mRNA-1:exon:23465;Parent=Msa0136250-mRNA-1 |
| chr1_3 | exon | 68086555 | 68086755 | 68086555 | ID=Msa0136250-mRNA-1:exon:23464;Parent=Msa0136250-mRNA-1 |
| chr1_3 | five_prime_UTR | 68086663 | 68086755 | 68086663 | ID=Msa0136250-mRNA-1:five_prime_utr;Parent=Msa0136250-mRNA-1 |
| chr1_3 | CDS | 68086555 | 68086662 | 68086555 | ID=Msa0136250-mRNA-1:cds;Parent=Msa0136250-mRNA-1 |
| chr1_3 | CDS | 68086045 | 68086203 | 68086045 | ID=Msa0136250-mRNA-1:cds;Parent=Msa0136250-mRNA-1 |
| chr1_3 | CDS | 68085780 | 68085952 | 68085780 | ID=Msa0136250-mRNA-1:cds;Parent=Msa0136250-mRNA-1 |
| chr1_3 | CDS | 68083961 | 68085620 | 68083961 | ID=Msa0136250-mRNA-1:cds;Parent=Msa0136250-mRNA-1 |
| chr1_3 | CDS | 68083739 | 68083795 | 68083739 | ID=Msa0136250-mRNA-1:cds;Parent=Msa0136250-mRNA-1 |
| chr1_3 | three_prime_UTR | 68083617 | 68083738 | 68083617 | ID=Msa0136250-mRNA-1:three_prime_utr;Parent=Msa0136250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
