Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271880 | XP_024632319.1 | 93.092 | 912 | 60 | 1 | 1 | 912 | 1 | 909 | 0.0 | 1669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271880 | sp|P0CB23|Y4862_ARATH | 42.048 | 459 | 250 | 4 | 6 | 449 | 5 | 462 | 3.86e-84 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271880 | Q2HVA4 | 93.092 | 912 | 60 | 1 | 1 | 912 | 1 | 909 | 0.0 | 1669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa0271880 | 0.855979 | 4.383933e-62 | -8.615850e-47 |
| Msa0005890 | Msa0271880 | 0.820662 | 6.092881e-53 | -8.615850e-47 |
| Msa0016040 | Msa0271880 | 0.818167 | 2.257510e-52 | -8.615850e-47 |
| Msa0017950 | Msa0271880 | 0.864893 | 8.759829e-65 | -8.615850e-47 |
| Msa0030370 | Msa0271880 | 0.811745 | 6.003583e-51 | -8.615850e-47 |
| Msa0048510 | Msa0271880 | 0.861265 | 1.158252e-63 | -8.615850e-47 |
| Msa0049760 | Msa0271880 | 0.805239 | 1.469621e-49 | -8.615850e-47 |
| Msa0052480 | Msa0271880 | 0.832586 | 8.689310e-56 | -8.615850e-47 |
| Msa0053230 | Msa0271880 | 0.827816 | 1.269327e-54 | -8.615850e-47 |
| Msa0054690 | Msa0271880 | 0.821803 | 3.324173e-53 | -8.615850e-47 |
| Msa0065020 | Msa0271880 | 0.813884 | 2.041867e-51 | -8.615850e-47 |
| Msa0077340 | Msa0271880 | 0.831225 | 1.883099e-55 | -8.615850e-47 |
| Msa0077560 | Msa0271880 | 0.839786 | 1.286298e-57 | -8.615850e-47 |
| Msa0081980 | Msa0271880 | 0.829471 | 5.054601e-55 | -8.615850e-47 |
| Msa0082020 | Msa0271880 | 0.807238 | 5.573486e-50 | -8.615850e-47 |
| Msa0089880 | Msa0271880 | 0.813385 | 2.628488e-51 | -8.615850e-47 |
| Msa0094780 | Msa0271880 | 0.874088 | 8.874486e-68 | -8.615850e-47 |
| Msa0097770 | Msa0271880 | 0.820877 | 5.436545e-53 | -8.615850e-47 |
| Msa0098520 | Msa0271880 | 0.835997 | 1.210935e-56 | -8.615850e-47 |
| Msa0098730 | Msa0271880 | 0.842769 | 2.111804e-58 | -8.615850e-47 |
| Msa0106620 | Msa0271880 | 0.820846 | 5.528162e-53 | -8.615850e-47 |
| Msa0125360 | Msa0271880 | 0.816598 | 5.093014e-52 | -8.615850e-47 |
| Msa0128460 | Msa0271880 | 0.817743 | 2.815341e-52 | -8.615850e-47 |
| Msa0133150 | Msa0271880 | 0.821820 | 3.294743e-53 | -8.615850e-47 |
| Msa0133280 | Msa0271880 | 0.842232 | 2.932212e-58 | -8.615850e-47 |
| Msa0136250 | Msa0271880 | 0.806006 | 1.014332e-49 | -8.615850e-47 |
| Msa0140280 | Msa0271880 | 0.825870 | 3.703180e-54 | -8.615850e-47 |
| Msa0143670 | Msa0271880 | 0.807221 | 5.618312e-50 | -8.615850e-47 |
| Msa0172480 | Msa0271880 | 0.808119 | 3.621410e-50 | -8.615850e-47 |
| Msa0173810 | Msa0271880 | 0.803213 | 3.880059e-49 | -8.615850e-47 |
| Msa0174290 | Msa0271880 | 0.809289 | 2.036609e-50 | -8.615850e-47 |
| Msa0181650 | Msa0271880 | 0.804407 | 2.192176e-49 | -8.615850e-47 |
| Msa0190110 | Msa0271880 | 0.940816 | 1.219596e-100 | -8.615850e-47 |
| Msa0190570 | Msa0271880 | 0.857234 | 1.875180e-62 | -8.615850e-47 |
| Msa0190730 | Msa0271880 | 0.814892 | 1.222133e-51 | -8.615850e-47 |
| Msa0200050 | Msa0271880 | 0.807200 | 5.678509e-50 | -8.615850e-47 |
| Msa0209980 | Msa0271880 | 0.800025 | 1.748839e-48 | -8.615850e-47 |
| Msa0213030 | Msa0271880 | 0.838741 | 2.401658e-57 | -8.615850e-47 |
| Msa0221000 | Msa0271880 | 0.807104 | 5.947872e-50 | -8.615850e-47 |
| Msa0223080 | Msa0271880 | 0.800753 | 1.243239e-48 | -8.615850e-47 |
| Msa0223210 | Msa0271880 | 0.807871 | 4.090886e-50 | -8.615850e-47 |
| Msa0225860 | Msa0271880 | 0.855062 | 8.114871e-62 | -8.615850e-47 |
| Msa0237210 | Msa0271880 | 0.804831 | 1.788022e-49 | -8.615850e-47 |
| Msa0241610 | Msa0271880 | 0.801992 | 6.931761e-49 | -8.615850e-47 |
| Msa0242590 | Msa0271880 | 0.824193 | 9.218562e-54 | -8.615850e-47 |
| Msa0260510 | Msa0271880 | 0.842390 | 2.663509e-58 | -8.615850e-47 |
| Msa0269210 | Msa0271880 | 0.819080 | 1.401267e-52 | -8.615850e-47 |
| Msa0271880 | Msa0279690 | 0.805906 | 1.064838e-49 | -8.615850e-47 |
| Msa0271880 | Msa0280790 | 0.810548 | 1.091467e-50 | -8.615850e-47 |
| Msa0271880 | Msa0298470 | 0.870973 | 9.733862e-67 | -8.615850e-47 |
| Msa0271880 | Msa0302160 | 0.800981 | 1.116952e-48 | -8.615850e-47 |
| Msa0271880 | Msa0302290 | 0.813901 | 2.023962e-51 | -8.615850e-47 |
| Msa0271880 | Msa0307270 | 0.804472 | 2.125356e-49 | -8.615850e-47 |
| Msa0271880 | Msa0310850 | 0.992868 | 6.006448e-196 | -8.615850e-47 |
| Msa0271880 | Msa0315690 | 0.807099 | 5.962833e-50 | -8.615850e-47 |
| Msa0271880 | Msa0330380 | 0.864278 | 1.363712e-64 | -8.615850e-47 |
| Msa0271880 | Msa0337700 | 0.806110 | 9.645292e-50 | -8.615850e-47 |
| Msa0271880 | Msa0339490 | 0.800984 | 1.114936e-48 | -8.615850e-47 |
| Msa0271880 | Msa0339650 | 0.806656 | 7.397666e-50 | -8.615850e-47 |
| Msa0271880 | Msa0340500 | 0.827413 | 1.586109e-54 | -8.615850e-47 |
| Msa0271880 | Msa0343010 | 0.800797 | 1.217496e-48 | -8.615850e-47 |
| Msa0271880 | Msa0361910 | 0.854371 | 1.287072e-61 | -8.615850e-47 |
| Msa0271880 | Msa0367150 | 0.811157 | 8.055006e-51 | -8.615850e-47 |
| Msa0271880 | Msa0369790 | 0.805328 | 1.407440e-49 | -8.615850e-47 |
| Msa0271880 | Msa0371030 | 0.808044 | 3.758512e-50 | -8.615850e-47 |
| Msa0271880 | Msa0371270 | 0.800164 | 1.638494e-48 | -8.615850e-47 |
| Msa0271880 | Msa0380670 | 0.815556 | 8.700336e-52 | -8.615850e-47 |
| Msa0271880 | Msa0409830 | 0.813042 | 3.127404e-51 | -8.615850e-47 |
| Msa0271880 | Msa0419540 | 0.836553 | 8.745325e-57 | -8.615850e-47 |
| Msa0271880 | Msa0430300 | 0.815298 | 9.932979e-52 | -8.615850e-47 |
| Msa0271880 | Msa0459740 | 0.808028 | 3.786718e-50 | -8.615850e-47 |
| Msa0271880 | Msa0464000 | 0.803891 | 2.807404e-49 | -8.615850e-47 |
| Msa0271880 | Msa0465530 | 0.827982 | 1.158163e-54 | -8.615850e-47 |
| Msa0271880 | Msa0481890 | 0.860565 | 1.890540e-63 | -8.615850e-47 |
| Msa0271880 | Msa0483100 | 0.830664 | 2.585805e-55 | -8.615850e-47 |
| Msa0271880 | Msa0502510 | 0.802387 | 5.747100e-49 | -8.615850e-47 |
| Msa0271880 | Msa0509550 | 0.801593 | 8.367055e-49 | -8.615850e-47 |
| Msa0271880 | Msa0521020 | 0.816713 | 4.797898e-52 | -8.615850e-47 |
| Msa0271880 | Msa0529030 | 0.836011 | 1.201304e-56 | -8.615850e-47 |
| Msa0271880 | Msa0531960 | 0.800330 | 1.516354e-48 | -8.615850e-47 |
| Msa0271880 | Msa0534720 | 0.854831 | 9.469301e-62 | -8.615850e-47 |
| Msa0271880 | Msa0567170 | 0.841126 | 5.738467e-58 | -8.615850e-47 |
| Msa0271880 | Msa0571290 | 0.806765 | 7.016226e-50 | -8.615850e-47 |
| Msa0271880 | Msa0573850 | 0.822112 | 2.818924e-53 | -8.615850e-47 |
| Msa0271880 | Msa0580370 | 0.866244 | 3.284349e-65 | -8.615850e-47 |
| Msa0271880 | Msa0580810 | 0.811576 | 6.534100e-51 | -8.615850e-47 |
| Msa0271880 | Msa0581470 | 0.863988 | 1.679590e-64 | -8.615850e-47 |
| Msa0271880 | Msa0588920 | 0.803826 | 2.896203e-49 | -8.615850e-47 |
| Msa0271880 | Msa0590830 | 0.805609 | 1.229278e-49 | -8.615850e-47 |
| Msa0271880 | Msa0620980 | 0.818836 | 1.592098e-52 | -8.615850e-47 |
| Msa0271880 | Msa0621710 | 0.826928 | 2.072719e-54 | -8.615850e-47 |
| Msa0271880 | Msa0624900 | 0.870533 | 1.358541e-66 | -8.615850e-47 |
| Msa0271880 | Msa0652000 | 0.806216 | 9.161485e-50 | -8.615850e-47 |
| Msa0271880 | Msa0657180 | 0.800028 | 1.746248e-48 | -8.615850e-47 |
| Msa0271880 | Msa0658640 | 0.851858 | 6.746434e-61 | -8.615850e-47 |
| Msa0271880 | Msa0666700 | 0.831394 | 1.711268e-55 | -8.615850e-47 |
| Msa0271880 | Msa0683470 | 0.800384 | 1.478481e-48 | -8.615850e-47 |
| Msa0271880 | Msa0701220 | 0.801069 | 1.071207e-48 | -8.615850e-47 |
| Msa0271880 | Msa0702810 | 0.805131 | 1.548149e-49 | -8.615850e-47 |
| Msa0271880 | Msa0703600 | 0.826155 | 3.167424e-54 | -8.615850e-47 |
| Msa0271880 | Msa0709200 | 0.828152 | 1.053616e-54 | -8.615850e-47 |
| Msa0271880 | Msa0709440 | 0.861794 | 7.985971e-64 | -8.615850e-47 |
| Msa0271880 | Msa0709630 | 0.817155 | 3.818618e-52 | -8.615850e-47 |
| Msa0271880 | Msa0714790 | 0.815341 | 9.715014e-52 | -8.615850e-47 |
| Msa0271880 | Msa0721080 | 0.812105 | 5.012459e-51 | -8.615850e-47 |
| Msa0271880 | Msa0735780 | 0.823928 | 1.063782e-53 | -8.615850e-47 |
| Msa0271880 | Msa0756820 | 0.803802 | 2.929253e-49 | -8.615850e-47 |
| Msa0271880 | Msa0761670 | 0.814607 | 1.413627e-51 | -8.615850e-47 |
| Msa0271880 | Msa0773630 | 0.838428 | 2.893003e-57 | -8.615850e-47 |
| Msa0271880 | Msa0777750 | 0.809626 | 1.724380e-50 | -8.615850e-47 |
| Msa0271880 | Msa0795870 | 0.881168 | 3.002491e-70 | -8.615850e-47 |
| Msa0271880 | Msa0804000 | 0.824682 | 7.072241e-54 | -8.615850e-47 |
| Msa0271880 | Msa0824450 | 0.856387 | 3.330996e-62 | -8.615850e-47 |
| Msa0271880 | Msa0828970 | 0.810100 | 1.363313e-50 | -8.615850e-47 |
| Msa0271880 | Msa0833650 | 0.877170 | 7.789410e-69 | -8.615850e-47 |
| Msa0271880 | Msa0836150 | 0.812887 | 3.381885e-51 | -8.615850e-47 |
| Msa0271880 | Msa0842070 | 0.832051 | 1.178638e-55 | -8.615850e-47 |
| Msa0271880 | Msa0855230 | 0.805713 | 1.168716e-49 | -8.615850e-47 |
| Msa0271880 | Msa0863620 | 0.809870 | 1.528343e-50 | -8.615850e-47 |
| Msa0271880 | Msa0878280 | 0.831515 | 1.597553e-55 | -8.615850e-47 |
| Msa0271880 | Msa0902510 | 0.804489 | 2.107599e-49 | -8.615850e-47 |
| Msa0271880 | Msa0915520 | 0.801120 | 1.046183e-48 | -8.615850e-47 |
| Msa0271880 | Msa0921000 | 0.831141 | 1.975363e-55 | -8.615850e-47 |
| Msa0271880 | Msa0931590 | 0.802461 | 5.548289e-49 | -8.615850e-47 |
| Msa0271880 | Msa0959520 | 0.801192 | 1.011248e-48 | -8.615850e-47 |
| Msa0271880 | Msa0966320 | 0.822913 | 1.837073e-53 | -8.615850e-47 |
| Msa0271880 | Msa0966480 | 0.815508 | 8.919873e-52 | -8.615850e-47 |
| Msa0271880 | Msa0997920 | 0.818753 | 1.662394e-52 | -8.615850e-47 |
| Msa0271880 | Msa1013350 | 0.816351 | 5.784932e-52 | -8.615850e-47 |
| Msa0271880 | Msa1028100 | 0.801444 | 8.980076e-49 | -8.615850e-47 |
| Msa0271880 | Msa1037540 | 0.817235 | 3.664024e-52 | -8.615850e-47 |
| Msa0271880 | Msa1081390 | 0.827444 | 1.559295e-54 | -8.615850e-47 |
| Msa0271880 | Msa1084530 | 0.857057 | 2.115689e-62 | -8.615850e-47 |
| Msa0271880 | Msa1094010 | 0.835434 | 1.681538e-56 | -8.615850e-47 |
| Msa0271880 | Msa1103990 | 0.830629 | 2.637582e-55 | -8.615850e-47 |
| Msa0271880 | Msa1116220 | 0.815813 | 7.625916e-52 | -8.615850e-47 |
| Msa0271880 | Msa1125820 | 0.858831 | 6.286490e-63 | -8.615850e-47 |
| Msa0271880 | Msa1125990 | 0.864005 | 1.659448e-64 | -8.615850e-47 |
| Msa0271880 | Msa1132530 | 0.800684 | 1.284338e-48 | -8.615850e-47 |
| Msa0271880 | Msa1132840 | 0.870921 | 1.012637e-66 | -8.615850e-47 |
| Msa0271880 | Msa1155170 | -0.801109 | 1.051654e-48 | -8.615850e-47 |
| Msa0271880 | Msa1160920 | 0.813729 | 2.209281e-51 | -8.615850e-47 |
| Msa0271880 | Msa1171290 | 0.860612 | 1.829922e-63 | -8.615850e-47 |
| Msa0271880 | Msa1174230 | 0.801627 | 8.236339e-49 | -8.615850e-47 |
| Msa0271880 | Msa1186020 | 0.809714 | 1.650871e-50 | -8.615850e-47 |
| Msa0271880 | Msa1190590 | 0.835418 | 1.697745e-56 | -8.615850e-47 |
| Msa0271880 | Msa1192570 | 0.872219 | 3.763065e-67 | -8.615850e-47 |
| Msa0271880 | Msa1200570 | 0.816974 | 4.192322e-52 | -8.615850e-47 |
| Msa0271880 | Msa1200890 | 0.856016 | 4.277680e-62 | -8.615850e-47 |
| Msa0271880 | Msa1208950 | 0.854365 | 1.291822e-61 | -8.615850e-47 |
| Msa0271880 | Msa1215870 | 0.842361 | 2.710536e-58 | -8.615850e-47 |
| Msa0271880 | Msa1218820 | 0.802680 | 5.001492e-49 | -8.615850e-47 |
| Msa0271880 | Msa1226520 | 0.850662 | 1.468867e-60 | -8.615850e-47 |
| Msa0271880 | Msa1228870 | 0.810190 | 1.303558e-50 | -8.615850e-47 |
| Msa0271880 | Msa1240260 | 0.803922 | 2.765537e-49 | -8.615850e-47 |
| Msa0271880 | Msa1253550 | 0.821179 | 4.632379e-53 | -8.615850e-47 |
| Msa0271880 | Msa1254240 | 0.806205 | 9.208444e-50 | -8.615850e-47 |
| Msa0271880 | Msa1263490 | 0.802373 | 5.786662e-49 | -8.615850e-47 |
| Msa0271880 | Msa1292590 | 0.830387 | 3.023106e-55 | -8.615850e-47 |
| Msa0271880 | Msa1293870 | 0.806029 | 1.002989e-49 | -8.615850e-47 |
| Msa0271880 | Msa1298370 | 0.801369 | 9.302431e-49 | -8.615850e-47 |
| Msa0271880 | Msa1307630 | 0.847097 | 1.434214e-59 | -8.615850e-47 |
| Msa0271880 | Msa1320670 | 0.829442 | 5.137491e-55 | -8.615850e-47 |
| Msa0271880 | Msa1325490 | 0.816225 | 6.169884e-52 | -8.615850e-47 |
| Msa0271880 | Msa1340200 | 0.809499 | 1.835756e-50 | -8.615850e-47 |
| Msa0271880 | Msa1343170 | 0.846169 | 2.570984e-59 | -8.615850e-47 |
| Msa0271880 | Msa1343180 | 0.836241 | 1.050145e-56 | -8.615850e-47 |
| Msa0271880 | Msa1359690 | 0.814870 | 1.236273e-51 | -8.615850e-47 |
| Msa0271880 | Msa1372040 | 0.800090 | 1.696797e-48 | -8.615850e-47 |
| Msa0271880 | Msa1373100 | 0.819675 | 1.025290e-52 | -8.615850e-47 |
| Msa0271880 | Msa1380120 | 0.803913 | 2.778490e-49 | -8.615850e-47 |
| Msa0271880 | Msa1381180 | 0.821485 | 3.937934e-53 | -8.615850e-47 |
| Msa0271880 | Msa1384150 | 0.813281 | 2.771099e-51 | -8.615850e-47 |
| Msa0271880 | Msa1389690 | 0.836415 | 9.484600e-57 | -8.615850e-47 |
| Msa0271880 | Msa1392580 | 0.833954 | 3.963309e-56 | -8.615850e-47 |
| Msa0271880 | Msa1397400 | 0.841332 | 5.065542e-58 | -8.615850e-47 |
| Msa0271880 | Msa1405460 | 0.834449 | 2.978898e-56 | -8.615850e-47 |
| Msa0271880 | Msa1420950 | 0.838133 | 3.445791e-57 | -8.615850e-47 |
| Msa0271880 | Msa1422950 | 0.819625 | 1.052851e-52 | -8.615850e-47 |
| Msa0271880 | Msa1427200 | 0.819099 | 1.387685e-52 | -8.615850e-47 |
| Msa0271880 | Msa1429070 | 0.828195 | 1.028863e-54 | -8.615850e-47 |
| Msa0271880 | Msa1437930 | 0.803426 | 3.505290e-49 | -8.615850e-47 |
| Msa0271880 | Msa1440880 | 0.853033 | 3.122528e-61 | -8.615850e-47 |
| Msa0271880 | Msa1464090 | 0.812408 | 4.303436e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271880 | MtrunA17_Chr2g0279621 | 93.092 | 912 | 60 | 1 | 1 | 912 | 1 | 909 | 0.0 | 1669 |
| Msa0271880 | MtrunA17_Chr8g0367551 | 33.916 | 687 | 379 | 10 | 6 | 641 | 5 | 667 | 2.92e-89 | 300 |
| Msa0271880 | MtrunA17_Chr5g0412231 | 27.924 | 684 | 376 | 19 | 188 | 854 | 75 | 658 | 2.17e-36 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271880 | AT4G38062.1 | 42.048 | 459 | 250 | 4 | 6 | 449 | 5 | 462 | 3.92e-85 | 295 |
Find 136 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAATTTCTTGTTCTTTGT+TGG | 0.207774 | 2_3:+3384031 | None:intergenic |
| GCACCTTAAGTCGTTGTTAT+TGG | 0.215312 | 2_3:-3384807 | Msa0271880:CDS |
| ACAATCCCATTGAGATTCTT+TGG | 0.224840 | 2_3:+3384103 | None:intergenic |
| AGAAGTTTCCATCTCTTTAC+AGG | 0.229736 | 2_3:+3383524 | None:intergenic |
| AGTATCCTATCAAGAAATTC+AGG | 0.246636 | 2_3:-3383550 | Msa0271880:CDS |
| TGAAACTATAAAGCACTTTC+AGG | 0.248889 | 2_3:-3383139 | Msa0271880:CDS |
| CAAAGGAAGCCGAGAGATTT+AGG | 0.271291 | 2_3:-3383362 | Msa0271880:CDS |
| TTTGACACAAACTGCTTTAC+CGG | 0.280794 | 2_3:+3383887 | None:intergenic |
| TCAGCTGCAGATAGCTTTAC+TGG | 0.288042 | 2_3:-3383406 | Msa0271880:CDS |
| ATCTTCCTTGCAAATGAGTT+TGG | 0.288186 | 2_3:-3384549 | Msa0271880:CDS |
| TGCTGAGAGGGTGTTCAAAT+TGG | 0.308939 | 2_3:-3384927 | Msa0271880:CDS |
| AGCAGGAGGAAGATCTTCTT+TGG | 0.311555 | 2_3:-3383182 | Msa0271880:CDS |
| TTTCCATGGACTCTTGCTTC+AGG | 0.322376 | 2_3:+3383256 | None:intergenic |
| AGAAAGTAAGAGGAAGCTTT+TGG | 0.328142 | 2_3:-3384456 | Msa0271880:CDS |
| AATCCTTCTCCATCATTGTT+TGG | 0.334457 | 2_3:+3383319 | None:intergenic |
| AGATAGTTCATCATTCTTAC+TGG | 0.342720 | 2_3:+3383623 | None:intergenic |
| CTGTGCAAGATAAAATTAAA+TGG | 0.345099 | 2_3:-3384682 | Msa0271880:CDS |
| AAGTAATAGTGAGTTGGTTT+TGG | 0.354371 | 2_3:-3384900 | Msa0271880:CDS |
| TGAAAGAAAAGTTGCATTTG+AGG | 0.358411 | 2_3:-3383673 | Msa0271880:CDS |
| CCAACAAAGAACAAGAAATT+CGG | 0.361782 | 2_3:-3384031 | Msa0271880:CDS |
| GGTTCCCTGAATTTCTTGAT+AGG | 0.371601 | 2_3:+3383545 | None:intergenic |
| GTACATTGTGCATTTAAATT+CGG | 0.376734 | 2_3:-3384975 | Msa0271880:CDS |
| TACTGCTAGAAACAGTTGTT+TGG | 0.378369 | 2_3:-3384864 | Msa0271880:CDS |
| AGACAATTCTCTAAACAATA+TGG | 0.379124 | 2_3:-3383817 | Msa0271880:CDS |
| AAGCAGAACTCGAGAAGCTT+AGG | 0.382942 | 2_3:-3385180 | Msa0271880:CDS |
| AAGATGGAAGCAGATGTTAT+TGG | 0.387513 | 2_3:-3384071 | Msa0271880:CDS |
| CGAGATGTGTAATCATGCTT+TGG | 0.387638 | 2_3:-3384486 | Msa0271880:CDS |
| GGTTTCTGTACCGAATGATT+TGG | 0.388474 | 2_3:+3383908 | None:intergenic |
| GAGTACATCTATGACAAAAT+TGG | 0.399018 | 2_3:-3382706 | Msa0271880:CDS |
| TTCAATTCAAGTAGAAAAGT+TGG | 0.404711 | 2_3:-3383064 | Msa0271880:CDS |
| CGAACAAGATAATCAGGAAC+TGG | 0.408736 | 2_3:-3384255 | Msa0271880:CDS |
| AGAGACTCTTGTGAAGGAAA+TGG | 0.412634 | 2_3:-3384297 | Msa0271880:CDS |
| AGAAATGCTAAAAGATGAAA+TGG | 0.417820 | 2_3:-3383646 | Msa0271880:CDS |
| GGAAAAGGAGAGATCTTTGC+TGG | 0.425601 | 2_3:-3384582 | Msa0271880:CDS |
| TTCAATATGATTCTCTTCAA+TGG | 0.428669 | 2_3:+3383974 | None:intergenic |
| TCCCAACGAGTTTCTTAGCT+CGG | 0.428727 | 2_3:+3384325 | None:intergenic |
| TCTCCTCGAACAAGATAATC+AGG | 0.434623 | 2_3:-3384261 | Msa0271880:CDS |
| AGAGGATGTGATAATGCAAT+TGG | 0.440594 | 2_3:-3384720 | Msa0271880:CDS |
| GTTCCTGATTATCTTGTTCG+AGG | 0.446067 | 2_3:+3384258 | None:intergenic |
| GAAGCAGTTTCAGTTATCAT+TGG | 0.450748 | 2_3:-3382875 | Msa0271880:CDS |
| GAACACAAGAATAATTAAAT+CGG | 0.451478 | 2_3:-3382971 | Msa0271880:CDS |
| AAATCATTCGGTACAGAAAC+CGG | 0.453233 | 2_3:-3383906 | Msa0271880:CDS |
| AAGAATAATTAAATCGGAAT+CGG | 0.453567 | 2_3:-3382965 | Msa0271880:CDS |
| TCGGGAGCTTCAGATAGAAC+TGG | 0.455342 | 2_3:-3384012 | Msa0271880:CDS |
| GCAGAGATCAAGTTTGAGAA+TGG | 0.464186 | 2_3:-3382790 | Msa0271880:CDS |
| CAACAAAGAACAAGAAATTC+GGG | 0.466336 | 2_3:-3384030 | Msa0271880:CDS |
| TCGCAACAAGCTTAGAAAGT+TGG | 0.468239 | 2_3:-3384162 | Msa0271880:CDS |
| TCAAGTCCAAAGAATCTCAA+TGG | 0.470626 | 2_3:-3384109 | Msa0271880:CDS |
| TCAAGCTAGGTTTGCTGAGA+GGG | 0.471672 | 2_3:-3384939 | Msa0271880:CDS |
| TAGATTGTGAAGCGCGGCAT+TGG | 0.474272 | 2_3:-3383596 | Msa0271880:CDS |
| TCTCTGCATTGTCAAGGATC+AGG | 0.476260 | 2_3:-3383448 | Msa0271880:CDS |
| GAGAGCTAAGCAAGCGAAGA+CGG | 0.476465 | 2_3:-3384753 | Msa0271880:CDS |
| AGATAGAAGAGTTGACCGTT+CGG | 0.480769 | 2_3:-3384364 | Msa0271880:CDS |
| GGATTCTCAGACAAGAACTT+TGG | 0.486530 | 2_3:-3384528 | Msa0271880:CDS |
| GAGCAAGGAGGAGTGGGAAA+AGG | 0.488727 | 2_3:-3384597 | Msa0271880:CDS |
| GAAGAAGTGTATTGAGGCTG+AGG | 0.493672 | 2_3:-3384777 | Msa0271880:CDS |
| GAAGATCTTCCTCCTGCTGA+AGG | 0.497924 | 2_3:+3383187 | None:intergenic |
| CAGCCAATAACAACGACTTA+AGG | 0.506636 | 2_3:+3384804 | None:intergenic |
| TCAGTTATCATTGGAAGCCA+TGG | 0.506820 | 2_3:-3382866 | Msa0271880:CDS |
| GACGAATGAAAAGCAGAAGA+TGG | 0.508341 | 2_3:-3382824 | Msa0271880:CDS |
| CAAGTCCAAAGAATCTCAAT+GGG | 0.511165 | 2_3:-3384108 | Msa0271880:CDS |
| TCTGCTCAAGATGGTGCAAA+TGG | 0.511603 | 2_3:-3382589 | Msa0271880:CDS |
| TGTAGTTTCTCGAAGTTGCT+CGG | 0.513376 | 2_3:+3385105 | None:intergenic |
| GGAGGGAAGTAATAGTGAGT+TGG | 0.514949 | 2_3:-3384906 | Msa0271880:CDS |
| TGAACTTGTCCAAACAATGA+TGG | 0.515353 | 2_3:-3383328 | Msa0271880:CDS |
| GGATGTGATAATGCAATTGG+AGG | 0.515665 | 2_3:-3384717 | Msa0271880:CDS |
| AAAGTTGGTTGAGGTTAGCA+TGG | 0.517141 | 2_3:-3383049 | Msa0271880:CDS |
| GCAGTTTGTGTCAAAGAGAA+TGG | 0.518499 | 2_3:-3383879 | Msa0271880:CDS |
| CTCAAATACGTGGCGCGGGA+GGG | 0.518796 | 2_3:-3384205 | Msa0271880:CDS |
| TGAGAGGGTGTTCAAATTGG+AGG | 0.521099 | 2_3:-3384924 | Msa0271880:CDS |
| AGCCGAGCTAAGAAACTCGT+TGG | 0.526234 | 2_3:-3384327 | Msa0271880:CDS |
| ATCATTGGAAGCCATGGAGT+TGG | 0.526584 | 2_3:-3382860 | Msa0271880:CDS |
| TTACAAAGTTATCGACAGAA+AGG | 0.528275 | 2_3:-3382750 | Msa0271880:CDS |
| GATGCTTACTCCAAATCATT+CGG | 0.529962 | 2_3:-3383918 | Msa0271880:CDS |
| GACAGAAAGGGAAGATATGT+TGG | 0.530584 | 2_3:-3382737 | Msa0271880:CDS |
| GCTCAAATACGTGGCGCGGG+AGG | 0.532341 | 2_3:-3384206 | Msa0271880:CDS |
| GAATGAGCAAGCCCTTAAGC+TGG | 0.532831 | 2_3:-3383484 | Msa0271880:CDS |
| GGATTGTCAGATAGCAAAGA+TGG | 0.533960 | 2_3:-3384087 | Msa0271880:CDS |
| CAACAAGCTTAGAAAGTTGG+AGG | 0.534255 | 2_3:-3384159 | Msa0271880:CDS |
| TCTCAGACAAGAACTTTGGA+AGG | 0.535844 | 2_3:-3384524 | Msa0271880:CDS |
| TTCAAGCTAGGTTTGCTGAG+AGG | 0.540809 | 2_3:-3384940 | Msa0271880:CDS |
| GATCCTTGACAATGCAGAGA+AGG | 0.541024 | 2_3:+3383451 | None:intergenic |
| GCCGAGCTAAGAAACTCGTT+GGG | 0.541330 | 2_3:-3384326 | Msa0271880:CDS |
| TACAAAGTTATCGACAGAAA+GGG | 0.541451 | 2_3:-3382749 | Msa0271880:CDS |
| CTCAGACAAGAACTTTGGAA+GGG | 0.541545 | 2_3:-3384523 | Msa0271880:CDS |
| CTCAAAACTAGTCTTGAACT+CGG | 0.542319 | 2_3:+3384421 | None:intergenic |
| GTATCCTATCAAGAAATTCA+GGG | 0.543754 | 2_3:-3383549 | Msa0271880:CDS |
| TCAAGTAGAAAAGTTGGTTG+AGG | 0.545469 | 2_3:-3383058 | Msa0271880:CDS |
| AGCAGAACTCGAGAAGCTTA+GGG | 0.546789 | 2_3:-3385179 | Msa0271880:CDS |
| GGAAACTTCTCTTCTGTCAC+GGG | 0.547308 | 2_3:-3383511 | Msa0271880:CDS |
| TCAGGGAACCTGTAAAGAGA+TGG | 0.553024 | 2_3:-3383532 | Msa0271880:CDS |
| GTAGTTTGTGATAATCTACA+TGG | 0.554725 | 2_3:-3382613 | Msa0271880:CDS |
| AAGGAGAGATCTTTGCTGGT+TGG | 0.554797 | 2_3:-3384578 | Msa0271880:CDS |
| TGGCTCGCGAAGAAAGTAAG+AGG | 0.555018 | 2_3:-3384466 | Msa0271880:CDS |
| TTGCTTGAGGAATCATCTGC+AGG | 0.557828 | 2_3:-3383747 | Msa0271880:CDS |
| TGGAAACTTCTCTTCTGTCA+CGG | 0.558765 | 2_3:-3383512 | Msa0271880:CDS |
| AGAATAACAAGATTCAAGCT+AGG | 0.559756 | 2_3:-3384952 | Msa0271880:CDS |
| CAAGGATCAGGAGAGAGATA+CGG | 0.561257 | 2_3:-3383436 | Msa0271880:CDS |
| CTACATGGTTCTGCTCAAGA+TGG | 0.561420 | 2_3:-3382598 | Msa0271880:CDS |
| TTCGATCGAGCAAGGAGGAG+TGG | 0.561741 | 2_3:-3384604 | Msa0271880:CDS |
| GAAGCTCAAATACGTGGCGC+GGG | 0.563592 | 2_3:-3384209 | Msa0271880:CDS |
| CTCTTGTGAAGGAAATGGAA+AGG | 0.565165 | 2_3:-3384292 | Msa0271880:CDS |
| TCGATCGAGCAAGGAGGAGT+GGG | 0.570348 | 2_3:-3384603 | Msa0271880:CDS |
| GAAAGAGCAGCTCTTGCAGA+TGG | 0.574508 | 2_3:-3383712 | Msa0271880:CDS |
| AGAATCCAAACTCATTTGCA+AGG | 0.578928 | 2_3:+3384544 | None:intergenic |
| CTGACTTGAGATCGAGCTCA+CGG | 0.580025 | 2_3:+3385062 | None:intergenic |
| TGAACTGAAGAGAATTAATG+AGG | 0.582035 | 2_3:-3385029 | Msa0271880:CDS |
| AGATCAGTTTCGATCGAGCA+AGG | 0.582339 | 2_3:-3384612 | Msa0271880:CDS |
| AAACCTTCTCTGCATTGTCA+AGG | 0.582460 | 2_3:-3383454 | Msa0271880:CDS |
| AAGATCTTCCTCCTGCTGAA+GGG | 0.590521 | 2_3:+3383188 | None:intergenic |
| TGACTTGAGATCGAGCTCAC+GGG | 0.590922 | 2_3:+3385063 | None:intergenic |
| TGTCCAAACAATGATGGAGA+AGG | 0.591175 | 2_3:-3383322 | Msa0271880:CDS |
| GTAAAGCTATCTGCAGCTGA+AGG | 0.592450 | 2_3:+3383409 | None:intergenic |
| AATTGGTGATTTGTCTAGTG+AGG | 0.592985 | 2_3:-3382689 | Msa0271880:CDS |
| TGATGAAAATGAAACAGCAA+TGG | 0.595687 | 2_3:-3382641 | Msa0271880:CDS |
| GAGAGGGTGTTCAAATTGGA+GGG | 0.595884 | 2_3:-3384923 | Msa0271880:CDS |
| AAACTGTTAACCTCTCTCAA+TGG | 0.596687 | 2_3:+3382511 | None:intergenic |
| AAAGAAAGAGACTCTTGTGA+AGG | 0.601023 | 2_3:-3384303 | Msa0271880:CDS |
| GAATGTTTGTGAAAGTAGCG+AGG | 0.601228 | 2_3:-3384837 | Msa0271880:CDS |
| AGAAGCTCAAATACGTGGCG+CGG | 0.605914 | 2_3:-3384210 | Msa0271880:CDS |
| CTCAATTAGATTGTGAAGCG+CGG | 0.607051 | 2_3:-3383602 | Msa0271880:CDS |
| GAGCCTGAAGCAAGAGTCCA+TGG | 0.607550 | 2_3:-3383259 | Msa0271880:CDS |
| CTCTTGCTTCAGGCTCGCAA+CGG | 0.609523 | 2_3:+3383266 | None:intergenic |
| TGGGCGATTGCCATTGAGAG+AGG | 0.610783 | 2_3:-3382521 | Msa0271880:CDS |
| TGAGGTTAGCATGGTTACAG+AGG | 0.611718 | 2_3:-3383040 | Msa0271880:CDS |
| ACAACAGAAGAAATTGCTTG+AGG | 0.618482 | 2_3:-3383760 | Msa0271880:CDS |
| CAAGCTTAGAAAGTTGGAGG+AGG | 0.618855 | 2_3:-3384156 | Msa0271880:CDS |
| TGCTGAGAAGAAGTGTATTG+AGG | 0.629290 | 2_3:-3384783 | Msa0271880:CDS |
| TGAGCTCGATCTCAAGTCAG+AGG | 0.648732 | 2_3:-3385059 | Msa0271880:CDS |
| GAACAAGATAATCAGGAACT+GGG | 0.653060 | 2_3:-3384254 | Msa0271880:CDS |
| TATCTCATCATTCCTCCGAA+CGG | 0.657829 | 2_3:+3384349 | None:intergenic |
| TAGAAGAGTTGACCGTTCGG+AGG | 0.660586 | 2_3:-3384361 | Msa0271880:CDS |
| CTGTAATGCAGAGAAAACAA+AGG | 0.674955 | 2_3:-3383379 | Msa0271880:CDS |
| TTTAGAGAAGCTCAAATACG+TGG | 0.703819 | 2_3:-3384215 | Msa0271880:CDS |
| GAAGACGGTGAAATTAAGAG+AGG | 0.704691 | 2_3:-3384738 | Msa0271880:CDS |
| TCAGTTTCGATCGAGCAAGG+AGG | 0.724053 | 2_3:-3384609 | Msa0271880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTCAATTTTTTTATTTG+TGG | + | chr2_3:3385169-3385188 | None:intergenic | 15.0% |
| !!! | AAAATTGAAGAAAATTTTGA+TGG | - | chr2_3:3385177-3385196 | Msa0271880:CDS | 15.0% |
| !!! | AAATTGAAGAAAATTTTGAT+GGG | - | chr2_3:3385178-3385197 | Msa0271880:CDS | 15.0% |
| !!! | AACTTTTCTTTCATGTTTTA+GGG | + | chr2_3:3384038-3384057 | None:intergenic | 20.0% |
| !! | GAACACAAGAATAATTAAAT+CGG | - | chr2_3:3384747-3384766 | Msa0271880:CDS | 20.0% |
| !! | AAGAATAATTAAATCGGAAT+CGG | - | chr2_3:3384753-3384772 | Msa0271880:CDS | 20.0% |
| !!! | TAAAAGTTTTCTTGAGAATT+TGG | - | chr2_3:3384780-3384799 | Msa0271880:CDS | 20.0% |
| !!! | TCAATTTTTTTATTTGTGGA+AGG | + | chr2_3:3385165-3385184 | None:intergenic | 20.0% |
| ! | GTACATTGTGCATTTAAATT+CGG | - | chr2_3:3382743-3382762 | Msa0271880:CDS | 25.0% |
| ! | CTGTGCAAGATAAAATTAAA+TGG | - | chr2_3:3383036-3383055 | Msa0271880:CDS | 25.0% |
| ! | TTCAATATGATTCTCTTCAA+TGG | + | chr2_3:3383747-3383766 | None:intergenic | 25.0% |
| ! | AGACAATTCTCTAAACAATA+TGG | - | chr2_3:3383901-3383920 | Msa0271880:CDS | 25.0% |
| !! | CAACTTTTCTTTCATGTTTT+AGG | + | chr2_3:3384039-3384058 | None:intergenic | 25.0% |
| ! | AGAAATGCTAAAAGATGAAA+TGG | - | chr2_3:3384072-3384091 | Msa0271880:CDS | 25.0% |
| !! | ATCTTCTAATTCTTTTTCCA+TGG | + | chr2_3:3384479-3384498 | None:intergenic | 25.0% |
| ! | AATTGAAAAAGAGAAACACA+GGG | + | chr2_3:3384641-3384660 | None:intergenic | 25.0% |
| ! | TTCAATTCAAGTAGAAAAGT+TGG | - | chr2_3:3384654-3384673 | Msa0271880:CDS | 25.0% |
| TGAACTGAAGAGAATTAATG+AGG | - | chr2_3:3382689-3382708 | Msa0271880:CDS | 30.0% | |
| AGAATAACAAGATTCAAGCT+AGG | - | chr2_3:3382766-3382785 | Msa0271880:CDS | 30.0% | |
| !!! | AAGTAATAGTGAGTTGGTTT+TGG | - | chr2_3:3382818-3382837 | Msa0271880:CDS | 30.0% |
| !!! | ACTAGTTTTGAGGATGTTTA+TGG | - | chr2_3:3383308-3383327 | Msa0271880:CDS | 30.0% |
| CCAACAAAGAACAAGAAATT+CGG | - | chr2_3:3383687-3383706 | Msa0271880:CDS | 30.0% | |
| CAACAAAGAACAAGAAATTC+GGG | - | chr2_3:3383688-3383707 | Msa0271880:CDS | 30.0% | |
| ACAAAAACAATTTCTGTTGG+AGG | - | chr2_3:3383925-3383944 | Msa0271880:CDS | 30.0% | |
| TGAAAGAAAAGTTGCATTTG+AGG | - | chr2_3:3384045-3384064 | Msa0271880:CDS | 30.0% | |
| AGATAGTTCATCATTCTTAC+TGG | + | chr2_3:3384098-3384117 | None:intergenic | 30.0% | |
| AGTATCCTATCAAGAAATTC+AGG | - | chr2_3:3384168-3384187 | Msa0271880:CDS | 30.0% | |
| GTATCCTATCAAGAAATTCA+GGG | - | chr2_3:3384169-3384188 | Msa0271880:CDS | 30.0% | |
| ! | TTTTTCTTGCCTAAATCTCT+CGG | + | chr2_3:3384368-3384387 | None:intergenic | 30.0% |
| ! | TGAAACTATAAAGCACTTTC+AGG | - | chr2_3:3384579-3384598 | Msa0271880:CDS | 30.0% |
| !!! | AGCATCAGAACAAGATTTTT+TGG | - | chr2_3:3384612-3384631 | Msa0271880:CDS | 30.0% |
| !!! | ATCAGAACAAGATTTTTTGG+AGG | - | chr2_3:3384615-3384634 | Msa0271880:CDS | 30.0% |
| GAATTGAAAAAGAGAAACAC+AGG | + | chr2_3:3384642-3384661 | None:intergenic | 30.0% | |
| !!! | CTTCAATTTCTAGTTTTGTC+AGG | + | chr2_3:3384723-3384742 | None:intergenic | 30.0% |
| !!! | CTTCGCTTCATGTTTTAAAA+GGG | + | chr2_3:3384827-3384846 | None:intergenic | 30.0% |
| TTACAAAGTTATCGACAGAA+AGG | - | chr2_3:3384968-3384987 | Msa0271880:CDS | 30.0% | |
| TACAAAGTTATCGACAGAAA+GGG | - | chr2_3:3384969-3384988 | Msa0271880:CDS | 30.0% | |
| GAGTACATCTATGACAAAAT+TGG | - | chr2_3:3385012-3385031 | Msa0271880:CDS | 30.0% | |
| TGATGAAAATGAAACAGCAA+TGG | - | chr2_3:3385077-3385096 | Msa0271880:CDS | 30.0% | |
| ! | GTAGTTTGTGATAATCTACA+TGG | - | chr2_3:3385105-3385124 | Msa0271880:CDS | 30.0% |
| !!! | CGATTTGTTGTGTTTTGACT+CGG | + | chr2_3:3382572-3382591 | None:intergenic | 35.0% |
| TACTGCTAGAAACAGTTGTT+TGG | - | chr2_3:3382854-3382873 | Msa0271880:CDS | 35.0% | |
| ! | AGAGGATGTGATAATGCAAT+TGG | - | chr2_3:3382998-3383017 | Msa0271880:CDS | 35.0% |
| ATCTTCCTTGCAAATGAGTT+TGG | - | chr2_3:3383169-3383188 | Msa0271880:CDS | 35.0% | |
| AGAATCCAAACTCATTTGCA+AGG | + | chr2_3:3383177-3383196 | None:intergenic | 35.0% | |
| ! | AGAAAGTAAGAGGAAGCTTT+TGG | - | chr2_3:3383262-3383281 | Msa0271880:CDS | 35.0% |
| !! | CTCAAAACTAGTCTTGAACT+CGG | + | chr2_3:3383300-3383319 | None:intergenic | 35.0% |
| AAAGAAAGAGACTCTTGTGA+AGG | - | chr2_3:3383415-3383434 | Msa0271880:CDS | 35.0% | |
| GAACAAGATAATCAGGAACT+GGG | - | chr2_3:3383464-3383483 | Msa0271880:CDS | 35.0% | |
| TTTAGAGAAGCTCAAATACG+TGG | - | chr2_3:3383503-3383522 | Msa0271880:CDS | 35.0% | |
| TCAAGTCCAAAGAATCTCAA+TGG | - | chr2_3:3383609-3383628 | Msa0271880:CDS | 35.0% | |
| CAAGTCCAAAGAATCTCAAT+GGG | - | chr2_3:3383610-3383629 | Msa0271880:CDS | 35.0% | |
| ACAATCCCATTGAGATTCTT+TGG | + | chr2_3:3383618-3383637 | None:intergenic | 35.0% | |
| AAGATGGAAGCAGATGTTAT+TGG | - | chr2_3:3383647-3383666 | Msa0271880:CDS | 35.0% | |
| CCGAATTTCTTGTTCTTTGT+TGG | + | chr2_3:3383690-3383709 | None:intergenic | 35.0% | |
| GATGCTTACTCCAAATCATT+CGG | - | chr2_3:3383800-3383819 | Msa0271880:CDS | 35.0% | |
| AAATCATTCGGTACAGAAAC+CGG | - | chr2_3:3383812-3383831 | Msa0271880:CDS | 35.0% | |
| TTTGACACAAACTGCTTTAC+CGG | + | chr2_3:3383834-3383853 | None:intergenic | 35.0% | |
| GGCACAAAAACAATTTCTGT+TGG | - | chr2_3:3383922-3383941 | Msa0271880:CDS | 35.0% | |
| ACAACAGAAGAAATTGCTTG+AGG | - | chr2_3:3383958-3383977 | Msa0271880:CDS | 35.0% | |
| AGAAGTTTCCATCTCTTTAC+AGG | + | chr2_3:3384197-3384216 | None:intergenic | 35.0% | |
| ! | GTTTTTGTTCTCCAGCTTAA+GGG | + | chr2_3:3384248-3384267 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTCTCTGCATTAC+AGG | + | chr2_3:3384341-3384360 | None:intergenic | 35.0% |
| CTGTAATGCAGAGAAAACAA+AGG | - | chr2_3:3384339-3384358 | Msa0271880:CDS | 35.0% | |
| TGAACTTGTCCAAACAATGA+TGG | - | chr2_3:3384390-3384409 | Msa0271880:CDS | 35.0% | |
| AATCCTTCTCCATCATTGTT+TGG | + | chr2_3:3384402-3384421 | None:intergenic | 35.0% | |
| ! | TCAAGTAGAAAAGTTGGTTG+AGG | - | chr2_3:3384660-3384679 | Msa0271880:CDS | 35.0% |
| ! | TTTTCTTGAGAATTTGGCAC+AGG | - | chr2_3:3384786-3384805 | Msa0271880:CDS | 35.0% |
| !! | GCTTCGCTTCATGTTTTAAA+AGG | + | chr2_3:3384828-3384847 | None:intergenic | 35.0% |
| GAAGCAGTTTCAGTTATCAT+TGG | - | chr2_3:3384843-3384862 | Msa0271880:CDS | 35.0% | |
| !!! | CTTTTTAGTTTCCAACTCCA+TGG | + | chr2_3:3384872-3384891 | None:intergenic | 35.0% |
| ! | AATTGGTGATTTGTCTAGTG+AGG | - | chr2_3:3385029-3385048 | Msa0271880:CDS | 35.0% |
| AAACTGTTAACCTCTCTCAA+TGG | + | chr2_3:3385210-3385229 | None:intergenic | 35.0% | |
| TGTAGTTTCTCGAAGTTGCT+CGG | + | chr2_3:3382616-3382635 | None:intergenic | 40.0% | |
| !!! | TAGTGAGTTGGTTTTGGCTT+TGG | - | chr2_3:3382824-3382843 | Msa0271880:CDS | 40.0% |
| GAATGTTTGTGAAAGTAGCG+AGG | - | chr2_3:3382881-3382900 | Msa0271880:CDS | 40.0% | |
| GCACCTTAAGTCGTTGTTAT+TGG | - | chr2_3:3382911-3382930 | Msa0271880:CDS | 40.0% | |
| CAGCCAATAACAACGACTTA+AGG | + | chr2_3:3382917-3382936 | None:intergenic | 40.0% | |
| ! | TGCTGAGAAGAAGTGTATTG+AGG | - | chr2_3:3382935-3382954 | Msa0271880:CDS | 40.0% |
| GAAGACGGTGAAATTAAGAG+AGG | - | chr2_3:3382980-3382999 | Msa0271880:CDS | 40.0% | |
| ! | GGATGTGATAATGCAATTGG+AGG | - | chr2_3:3383001-3383020 | Msa0271880:CDS | 40.0% |
| GGATTCTCAGACAAGAACTT+TGG | - | chr2_3:3383190-3383209 | Msa0271880:CDS | 40.0% | |
| TCTCAGACAAGAACTTTGGA+AGG | - | chr2_3:3383194-3383213 | Msa0271880:CDS | 40.0% | |
| ! | CTCAGACAAGAACTTTGGAA+GGG | - | chr2_3:3383195-3383214 | Msa0271880:CDS | 40.0% |
| CGAGATGTGTAATCATGCTT+TGG | - | chr2_3:3383232-3383251 | Msa0271880:CDS | 40.0% | |
| ! | AAGTAAGAGGAAGCTTTTGG+AGG | - | chr2_3:3383265-3383284 | Msa0271880:CDS | 40.0% |
| !!! | CGAGTTCAAGACTAGTTTTG+AGG | - | chr2_3:3383298-3383317 | Msa0271880:CDS | 40.0% |
| AGATAGAAGAGTTGACCGTT+CGG | - | chr2_3:3383354-3383373 | Msa0271880:CDS | 40.0% | |
| TATCTCATCATTCCTCCGAA+CGG | + | chr2_3:3383372-3383391 | None:intergenic | 40.0% | |
| AGAGACTCTTGTGAAGGAAA+TGG | - | chr2_3:3383421-3383440 | Msa0271880:CDS | 40.0% | |
| CTCTTGTGAAGGAAATGGAA+AGG | - | chr2_3:3383426-3383445 | Msa0271880:CDS | 40.0% | |
| TCTCCTCGAACAAGATAATC+AGG | - | chr2_3:3383457-3383476 | Msa0271880:CDS | 40.0% | |
| GTTCCTGATTATCTTGTTCG+AGG | + | chr2_3:3383463-3383482 | None:intergenic | 40.0% | |
| CGAACAAGATAATCAGGAAC+TGG | - | chr2_3:3383463-3383482 | Msa0271880:CDS | 40.0% | |
| TCGCAACAAGCTTAGAAAGT+TGG | - | chr2_3:3383556-3383575 | Msa0271880:CDS | 40.0% | |
| CAACAAGCTTAGAAAGTTGG+AGG | - | chr2_3:3383559-3383578 | Msa0271880:CDS | 40.0% | |
| GGATTGTCAGATAGCAAAGA+TGG | - | chr2_3:3383631-3383650 | Msa0271880:CDS | 40.0% | |
| GGTTTCTGTACCGAATGATT+TGG | + | chr2_3:3383813-3383832 | None:intergenic | 40.0% | |
| GCAGTTTGTGTCAAAGAGAA+TGG | - | chr2_3:3383839-3383858 | Msa0271880:CDS | 40.0% | |
| CTCAATTAGATTGTGAAGCG+CGG | - | chr2_3:3384116-3384135 | Msa0271880:CDS | 40.0% | |
| GGTTCCCTGAATTTCTTGAT+AGG | + | chr2_3:3384176-3384195 | None:intergenic | 40.0% | |
| TGGAAACTTCTCTTCTGTCA+CGG | - | chr2_3:3384206-3384225 | Msa0271880:CDS | 40.0% | |
| ! | GGTTTTTGTTCTCCAGCTTA+AGG | + | chr2_3:3384249-3384268 | None:intergenic | 40.0% |
| AAACCTTCTCTGCATTGTCA+AGG | - | chr2_3:3384264-3384283 | Msa0271880:CDS | 40.0% | |
| ! | TGTCCAAACAATGATGGAGA+AGG | - | chr2_3:3384396-3384415 | Msa0271880:CDS | 40.0% |
| ! | AAAGTTGGTTGAGGTTAGCA+TGG | - | chr2_3:3384669-3384688 | Msa0271880:CDS | 40.0% |
| TCAGTTATCATTGGAAGCCA+TGG | - | chr2_3:3384852-3384871 | Msa0271880:CDS | 40.0% | |
| GACGAATGAAAAGCAGAAGA+TGG | - | chr2_3:3384894-3384913 | Msa0271880:CDS | 40.0% | |
| GCAGAGATCAAGTTTGAGAA+TGG | - | chr2_3:3384928-3384947 | Msa0271880:CDS | 40.0% | |
| GACAGAAAGGGAAGATATGT+TGG | - | chr2_3:3384981-3385000 | Msa0271880:CDS | 40.0% | |
| AAGCAGAACTCGAGAAGCTT+AGG | - | chr2_3:3382538-3382557 | Msa0271880:CDS | 45.0% | |
| AGCAGAACTCGAGAAGCTTA+GGG | - | chr2_3:3382539-3382558 | Msa0271880:CDS | 45.0% | |
| !! | TTCAAGCTAGGTTTGCTGAG+AGG | - | chr2_3:3382778-3382797 | Msa0271880:CDS | 45.0% |
| !! | TCAAGCTAGGTTTGCTGAGA+GGG | - | chr2_3:3382779-3382798 | Msa0271880:CDS | 45.0% |
| !! | TGCTGAGAGGGTGTTCAAAT+TGG | - | chr2_3:3382791-3382810 | Msa0271880:CDS | 45.0% |
| !! | TGAGAGGGTGTTCAAATTGG+AGG | - | chr2_3:3382794-3382813 | Msa0271880:CDS | 45.0% |
| !! | GAGAGGGTGTTCAAATTGGA+GGG | - | chr2_3:3382795-3382814 | Msa0271880:CDS | 45.0% |
| GGAGGGAAGTAATAGTGAGT+TGG | - | chr2_3:3382812-3382831 | Msa0271880:CDS | 45.0% | |
| ! | GAAGAAGTGTATTGAGGCTG+AGG | - | chr2_3:3382941-3382960 | Msa0271880:CDS | 45.0% |
| AGATCAGTTTCGATCGAGCA+AGG | - | chr2_3:3383106-3383125 | Msa0271880:CDS | 45.0% | |
| GGAAAAGGAGAGATCTTTGC+TGG | - | chr2_3:3383136-3383155 | Msa0271880:CDS | 45.0% | |
| AAGGAGAGATCTTTGCTGGT+TGG | - | chr2_3:3383140-3383159 | Msa0271880:CDS | 45.0% | |
| TCCCAACGAGTTTCTTAGCT+CGG | + | chr2_3:3383396-3383415 | None:intergenic | 45.0% | |
| CAAGCTTAGAAAGTTGGAGG+AGG | - | chr2_3:3383562-3383581 | Msa0271880:CDS | 45.0% | |
| TTGCTTGAGGAATCATCTGC+AGG | - | chr2_3:3383971-3383990 | Msa0271880:CDS | 45.0% | |
| TCAGGGAACCTGTAAAGAGA+TGG | - | chr2_3:3384186-3384205 | Msa0271880:CDS | 45.0% | |
| GGAAACTTCTCTTCTGTCAC+GGG | - | chr2_3:3384207-3384226 | Msa0271880:CDS | 45.0% | |
| GATCCTTGACAATGCAGAGA+AGG | + | chr2_3:3384270-3384289 | None:intergenic | 45.0% | |
| TCTCTGCATTGTCAAGGATC+AGG | - | chr2_3:3384270-3384289 | Msa0271880:CDS | 45.0% | |
| CAAGGATCAGGAGAGAGATA+CGG | - | chr2_3:3384282-3384301 | Msa0271880:CDS | 45.0% | |
| GTAAAGCTATCTGCAGCTGA+AGG | + | chr2_3:3384312-3384331 | None:intergenic | 45.0% | |
| ! | TCAGCTGCAGATAGCTTTAC+TGG | - | chr2_3:3384312-3384331 | Msa0271880:CDS | 45.0% |
| CAAAGGAAGCCGAGAGATTT+AGG | - | chr2_3:3384356-3384375 | Msa0271880:CDS | 45.0% | |
| TTTCCATGGACTCTTGCTTC+AGG | + | chr2_3:3384465-3384484 | None:intergenic | 45.0% | |
| AAGATCTTCCTCCTGCTGAA+GGG | + | chr2_3:3384533-3384552 | None:intergenic | 45.0% | |
| AGCAGGAGGAAGATCTTCTT+TGG | - | chr2_3:3384536-3384555 | Msa0271880:CDS | 45.0% | |
| TGAGGTTAGCATGGTTACAG+AGG | - | chr2_3:3384678-3384697 | Msa0271880:CDS | 45.0% | |
| ATCATTGGAAGCCATGGAGT+TGG | - | chr2_3:3384858-3384877 | Msa0271880:CDS | 45.0% | |
| ! | CTACATGGTTCTGCTCAAGA+TGG | - | chr2_3:3385120-3385139 | Msa0271880:CDS | 45.0% |
| TCTGCTCAAGATGGTGCAAA+TGG | - | chr2_3:3385129-3385148 | Msa0271880:CDS | 45.0% | |
| TGACTTGAGATCGAGCTCAC+GGG | + | chr2_3:3382658-3382677 | None:intergenic | 50.0% | |
| ! | CTGACTTGAGATCGAGCTCA+CGG | + | chr2_3:3382659-3382678 | None:intergenic | 50.0% |
| TGAGCTCGATCTCAAGTCAG+AGG | - | chr2_3:3382659-3382678 | Msa0271880:CDS | 50.0% | |
| GAGAGCTAAGCAAGCGAAGA+CGG | - | chr2_3:3382965-3382984 | Msa0271880:CDS | 50.0% | |
| TCAGTTTCGATCGAGCAAGG+AGG | - | chr2_3:3383109-3383128 | Msa0271880:CDS | 50.0% | |
| TGGCTCGCGAAGAAAGTAAG+AGG | - | chr2_3:3383252-3383271 | Msa0271880:CDS | 50.0% | |
| TAGAAGAGTTGACCGTTCGG+AGG | - | chr2_3:3383357-3383376 | Msa0271880:CDS | 50.0% | |
| AGCCGAGCTAAGAAACTCGT+TGG | - | chr2_3:3383391-3383410 | Msa0271880:CDS | 50.0% | |
| GCCGAGCTAAGAAACTCGTT+GGG | - | chr2_3:3383392-3383411 | Msa0271880:CDS | 50.0% | |
| AGAAGCTCAAATACGTGGCG+CGG | - | chr2_3:3383508-3383527 | Msa0271880:CDS | 50.0% | |
| TCGGGAGCTTCAGATAGAAC+TGG | - | chr2_3:3383706-3383725 | Msa0271880:CDS | 50.0% | |
| GAAAGAGCAGCTCTTGCAGA+TGG | - | chr2_3:3384006-3384025 | Msa0271880:CDS | 50.0% | |
| TAGATTGTGAAGCGCGGCAT+TGG | - | chr2_3:3384122-3384141 | Msa0271880:CDS | 50.0% | |
| GAATGAGCAAGCCCTTAAGC+TGG | - | chr2_3:3384234-3384253 | Msa0271880:CDS | 50.0% | |
| TGCACAAAAAGCCCTTCAGC+AGG | - | chr2_3:3384519-3384538 | Msa0271880:CDS | 50.0% | |
| ACAAAAAGCCCTTCAGCAGG+AGG | - | chr2_3:3384522-3384541 | Msa0271880:CDS | 50.0% | |
| GAAGATCTTCCTCCTGCTGA+AGG | + | chr2_3:3384534-3384553 | None:intergenic | 50.0% | |
| TTCGATCGAGCAAGGAGGAG+TGG | - | chr2_3:3383114-3383133 | Msa0271880:CDS | 55.0% | |
| TCGATCGAGCAAGGAGGAGT+GGG | - | chr2_3:3383115-3383134 | Msa0271880:CDS | 55.0% | |
| GAGCAAGGAGGAGTGGGAAA+AGG | - | chr2_3:3383121-3383140 | Msa0271880:CDS | 55.0% | |
| GAAGCTCAAATACGTGGCGC+GGG | - | chr2_3:3383509-3383528 | Msa0271880:CDS | 55.0% | |
| CTCTTGCTTCAGGCTCGCAA+CGG | + | chr2_3:3384455-3384474 | None:intergenic | 55.0% | |
| GAGCCTGAAGCAAGAGTCCA+TGG | - | chr2_3:3384459-3384478 | Msa0271880:CDS | 55.0% | |
| TGGGCGATTGCCATTGAGAG+AGG | - | chr2_3:3385197-3385216 | Msa0271880:CDS | 55.0% | |
| CTCAAATACGTGGCGCGGGA+GGG | - | chr2_3:3383513-3383532 | Msa0271880:CDS | 60.0% | |
| GCTCAAATACGTGGCGCGGG+AGG | - | chr2_3:3383512-3383531 | Msa0271880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 3382501 | 3385239 | 3382501 | ID=Msa0271880;Name=Msa0271880 |
| chr2_3 | mRNA | 3382501 | 3385239 | 3382501 | ID=Msa0271880-mRNA-1;Parent=Msa0271880;Name=Msa0271880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|912 |
| chr2_3 | exon | 3382501 | 3385239 | 3382501 | ID=Msa0271880-mRNA-1:exon:1651;Parent=Msa0271880-mRNA-1 |
| chr2_3 | CDS | 3382501 | 3385239 | 3382501 | ID=Msa0271880-mRNA-1:cds;Parent=Msa0271880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
