Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089880 | XP_039685930.1 | 93.036 | 718 | 47 | 3 | 1 | 718 | 1 | 715 | 0.0 | 1292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089880 | A0A072VPU0 | 93.036 | 718 | 47 | 3 | 1 | 718 | 1 | 715 | 0.0 | 1292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089880 | Msa0094780 | 0.821407 | 4.103957e-53 | -8.615850e-47 |
| Msa0089880 | Msa0136250 | 0.986610 | 2.291500e-167 | -8.615850e-47 |
| Msa0089880 | Msa0225860 | 0.815621 | 8.417240e-52 | -8.615850e-47 |
| Msa0089880 | Msa0271880 | 0.813385 | 2.628488e-51 | -8.615850e-47 |
| Msa0089880 | Msa0298470 | 0.802677 | 5.007247e-49 | -8.615850e-47 |
| Msa0089880 | Msa0310850 | 0.807922 | 3.988634e-50 | -8.615850e-47 |
| Msa0089880 | Msa0521020 | 0.800763 | 1.237319e-48 | -8.615850e-47 |
| Msa0089880 | Msa0534720 | 0.804977 | 1.666825e-49 | -8.615850e-47 |
| Msa0089880 | Msa0580370 | 0.802698 | 4.959496e-49 | -8.615850e-47 |
| Msa0089880 | Msa0624900 | 0.804050 | 2.602188e-49 | -8.615850e-47 |
| Msa0089880 | Msa0795870 | 0.805750 | 1.148129e-49 | -8.615850e-47 |
| Msa0089880 | Msa0833650 | 0.806962 | 6.375765e-50 | -8.615850e-47 |
| Msa0089880 | Msa1132840 | 0.804738 | 1.870152e-49 | -8.615850e-47 |
| Msa0089880 | Msa1192570 | 0.818533 | 1.865149e-52 | -8.615850e-47 |
| Msa0089880 | Msa1208950 | 0.805768 | 1.138234e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089880 | MtrunA17_Chr1g0207541 | 93.036 | 718 | 47 | 3 | 1 | 718 | 1 | 715 | 0.0 | 1292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089880 | AT1G49870.1 | 43.505 | 816 | 304 | 24 | 28 | 710 | 32 | 823 | 1.47e-166 | 500 |
| Msa0089880 | AT1G49870.2 | 43.467 | 796 | 298 | 23 | 48 | 710 | 9 | 785 | 1.82e-164 | 493 |
Find 162 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGACTTGAGTTCACTCTTT+TGG | 0.147983 | 1_2:-71640938 | None:intergenic |
| CGAAAATGATAATGTATTAT+TGG | 0.216712 | 1_2:-71639446 | None:intergenic |
| AGATGGGTTGGAGAAGATTT+TGG | 0.222969 | 1_2:+71641727 | Msa0089880:CDS |
| TCTATTTGACAATGCTTCTT+TGG | 0.229577 | 1_2:-71640654 | None:intergenic |
| ATAGAGACACCCTCTATTAT+TGG | 0.243317 | 1_2:+71640672 | Msa0089880:CDS |
| TTTGTTGATAACAAGGAATT+TGG | 0.250470 | 1_2:+71642460 | Msa0089880:three_prime_UTR |
| ACCTGATTTGGGAAGTATTC+TGG | 0.265806 | 1_2:+71641415 | Msa0089880:CDS |
| AGCAGAAGCTCAACTATTAA+TGG | 0.274480 | 1_2:+71640557 | Msa0089880:CDS |
| ATCAGAGTGCATACCTGATT+TGG | 0.276092 | 1_2:+71641403 | Msa0089880:CDS |
| GCAACTATAGTTGCAACTTA+TGG | 0.282964 | 1_2:+71641104 | Msa0089880:CDS |
| TTGCGCGGAAACCAGTTAAT+AGG | 0.308760 | 1_2:-71640052 | None:intergenic |
| CTTGGAGACATTAGGCTTCA+TGG | 0.316164 | 1_2:-71642164 | None:intergenic |
| CATAGGAATGAAACTAAATT+AGG | 0.316719 | 1_2:+71641344 | Msa0089880:CDS |
| AATAAATTGACGAAGGAATT+AGG | 0.317425 | 1_2:+71639959 | Msa0089880:CDS |
| GTAAAACTTCTCCTATTAAC+TGG | 0.318045 | 1_2:+71640041 | Msa0089880:CDS |
| TGAGAGTTTGGATAAAGTTT+TGG | 0.321510 | 1_2:+71641862 | Msa0089880:CDS |
| TAGGGTTACCTTTCCGATCT+TGG | 0.327646 | 1_2:-71639594 | None:intergenic |
| TGATGACTTTCATCTGTATC+AGG | 0.330426 | 1_2:-71640858 | None:intergenic |
| AAGAGTATTGAGGGAGAAAA+TGG | 0.331424 | 1_2:+71640272 | Msa0089880:CDS |
| GAGGAAAATTAAGATGCTTC+AGG | 0.332559 | 1_2:+71640096 | Msa0089880:CDS |
| AACAACATTTACACATTCAA+TGG | 0.333707 | 1_2:-71642485 | None:intergenic |
| GAGAGAGTTGGAAGAGGCCT+GGG | 0.345934 | 1_2:+71642120 | Msa0089880:CDS |
| CTTGCTGGAAAATTAATTGC+TGG | 0.359085 | 1_2:-71641173 | None:intergenic |
| CTAATTTAGTTTCATTCCTA+TGG | 0.359167 | 1_2:-71641343 | None:intergenic |
| ACCTCGCGGCGCGTAAAATT+CGG | 0.362205 | 1_2:-71640362 | None:intergenic |
| AACTTCGCCCCATTCATTCC+CGG | 0.377250 | 1_2:-71641924 | None:intergenic |
| TTCTTGCTTTCTAGGCTGCC+TGG | 0.377702 | 1_2:+71642353 | Msa0089880:intron |
| CTTCATTTGTCTCCTCCAAC+TGG | 0.380965 | 1_2:-71641967 | None:intergenic |
| CTGCTTTGGTGGAGGCATCT+TGG | 0.382132 | 1_2:+71640337 | Msa0089880:CDS |
| TGGTGGTCTGGACCAAGTTT+TGG | 0.384713 | 1_2:+71641997 | Msa0089880:CDS |
| TCTCTTTCCAATCTATGTGC+TGG | 0.386049 | 1_2:-71641755 | None:intergenic |
| GGTAAAGCCAGCACATAGAT+TGG | 0.389122 | 1_2:+71641748 | Msa0089880:CDS |
| AATGACGACATTCTTCTTGC+TGG | 0.390183 | 1_2:-71641188 | None:intergenic |
| TCTCCTCCAACTGGTTATTT+CGG | 0.390573 | 1_2:-71641958 | None:intergenic |
| GGAGGCTCGAAGAGCTGCTT+TGG | 0.392310 | 1_2:+71640323 | Msa0089880:CDS |
| TCTCATATTCAGGAAGTAGA+TGG | 0.396955 | 1_2:+71640198 | Msa0089880:intron |
| CTGTGGCTCGCCGCAAGGCA+AGG | 0.400658 | 1_2:+71642095 | Msa0089880:CDS |
| AAAAGTTATCGTCACAAATC+AGG | 0.404328 | 1_2:+71640005 | Msa0089880:CDS |
| ACAATGCTTCTTTGGACAAT+CGG | 0.405172 | 1_2:-71640646 | None:intergenic |
| AGCAAGAAGAATGTCGTCAT+TGG | 0.406742 | 1_2:+71641190 | Msa0089880:CDS |
| TGGAAAATTAATTGCTGGAT+TGG | 0.407077 | 1_2:-71641168 | None:intergenic |
| AACCTTGTCTTGTTCAAGCT+TGG | 0.407936 | 1_2:-71642182 | None:intergenic |
| GAGGTAGGAGAACGAGGAAG+AGG | 0.408997 | 1_2:-71639560 | None:intergenic |
| AATTCATCTTTACTAAATGA+AGG | 0.411210 | 1_2:-71640804 | None:intergenic |
| CGAAGATGAACTTTCTTCTC+TGG | 0.411329 | 1_2:+71641082 | Msa0089880:CDS |
| TGTTCAAGCTTGGAGACATT+AGG | 0.412725 | 1_2:-71642172 | None:intergenic |
| GATTCCAAGATATCATTTCC+AGG | 0.413402 | 1_2:+71640969 | Msa0089880:CDS |
| TTGAGCTTCTGCTTCATCAC+TGG | 0.417482 | 1_2:-71640547 | None:intergenic |
| ACCAGAATACTTCCCAAATC+AGG | 0.421631 | 1_2:-71641416 | None:intergenic |
| GGAAAATTAATTGCTGGATT+GGG | 0.421777 | 1_2:-71641167 | None:intergenic |
| TGTGTCCGAATGTGAGAGTT+TGG | 0.423140 | 1_2:+71641850 | Msa0089880:CDS |
| TTATGGTTTAAATGCTGCCT+TGG | 0.429011 | 1_2:+71641121 | Msa0089880:CDS |
| AATCCCTGGAAATGATATCT+TGG | 0.433501 | 1_2:-71640973 | None:intergenic |
| TGAAGAAGGTGGTGGTGGTC+TGG | 0.438089 | 1_2:+71641985 | Msa0089880:CDS |
| TCAGAGTGCATACCTGATTT+GGG | 0.438474 | 1_2:+71641404 | Msa0089880:CDS |
| CAATGCTTCTTTGGACAATC+GGG | 0.443605 | 1_2:-71640645 | None:intergenic |
| TGAAGGGCGTGTTGCAAGCT+TGG | 0.443827 | 1_2:-71640787 | None:intergenic |
| AGAGAGAGTTGGAAGAGGCC+TGG | 0.451231 | 1_2:+71642119 | Msa0089880:CDS |
| AGGCCTTACCACAGGGAAGC+CGG | 0.455899 | 1_2:+71641786 | Msa0089880:CDS |
| GGTTAAGCACGTGTCTAGGC+TGG | 0.456379 | 1_2:+71641883 | Msa0089880:CDS |
| AAATAAAGACCGGGAATGAA+TGG | 0.457096 | 1_2:+71641915 | Msa0089880:CDS |
| AAGTGCAACTGAAGCTTTCG+AGG | 0.457632 | 1_2:+71640587 | Msa0089880:CDS |
| ACATGTCTCAAGACTTGAAA+AGG | 0.459009 | 1_2:+71641583 | Msa0089880:CDS |
| TTTCGAGGCAGCTGAGGCTA+TGG | 0.459678 | 1_2:+71640602 | Msa0089880:CDS |
| ACGAGGAAGAGGAGGAGAAT+CGG | 0.462914 | 1_2:-71639549 | None:intergenic |
| GGCTCGAAGAGCTGCTTTGG+TGG | 0.464293 | 1_2:+71640326 | Msa0089880:CDS |
| ATGATAGAAGAAAACAAAGA+TGG | 0.467169 | 1_2:+71641710 | Msa0089880:CDS |
| TTTATCCAAACTCTCACATT+CGG | 0.471101 | 1_2:-71641855 | None:intergenic |
| TGATTCTTCTCCAATAATAG+AGG | 0.472032 | 1_2:-71640682 | None:intergenic |
| ATTTATGTTTAACCAAAACT+TGG | 0.473566 | 1_2:-71642009 | None:intergenic |
| CGCATTATTCAAGAGTATTG+AGG | 0.475279 | 1_2:+71640262 | Msa0089880:CDS |
| GGCCTTACCACAGGGAAGCC+GGG | 0.482227 | 1_2:+71641787 | Msa0089880:CDS |
| ATTGGAAAGAGAAAAGTTGC+AGG | 0.484009 | 1_2:+71641766 | Msa0089880:CDS |
| CTCAGCTTCAGCTTTAATCC+AGG | 0.486257 | 1_2:-71642371 | None:intergenic |
| GTAGGAGAACGAGGAAGAGG+AGG | 0.488886 | 1_2:-71639557 | None:intergenic |
| AGAAGAAAACAAAGATGGGT+TGG | 0.488981 | 1_2:+71641715 | Msa0089880:CDS |
| CTTGGATGGAACATCGAGAA+AGG | 0.489214 | 1_2:+71641229 | Msa0089880:CDS |
| AATAAAGACCGGGAATGAAT+GGG | 0.490163 | 1_2:+71641916 | Msa0089880:CDS |
| TAATGCTTCACCAGAAGAAA+AGG | 0.490641 | 1_2:-71641660 | None:intergenic |
| AGCTCTTGTAAATCTGTTGA+TGG | 0.490869 | 1_2:+71641374 | Msa0089880:CDS |
| GCAAGAAGAATGTCGTCATT+GGG | 0.491869 | 1_2:+71641191 | Msa0089880:CDS |
| AATTGCTGGATTGGGCTGCT+TGG | 0.499178 | 1_2:-71641159 | None:intergenic |
| TGAGCTTCTGCTTCATCACT+GGG | 0.500824 | 1_2:-71640546 | None:intergenic |
| GCATTATTCAAGAGTATTGA+GGG | 0.503484 | 1_2:+71640263 | Msa0089880:CDS |
| GGATTATTGAGAGGAAAAGT+AGG | 0.504435 | 1_2:+71640991 | Msa0089880:CDS |
| AAGACTTGAAAAGGAAGTTC+AGG | 0.505605 | 1_2:+71641592 | Msa0089880:CDS |
| AAAGATCACACAGAAGTACT+AGG | 0.509209 | 1_2:+71641539 | Msa0089880:CDS |
| AACCCGGCTTCCCTGTGGTA+AGG | 0.509284 | 1_2:-71641789 | None:intergenic |
| CTTTCTCGATGTTCCATCCA+AGG | 0.515891 | 1_2:-71641228 | None:intergenic |
| TGAACTCAAGTCTGAAGACT+TGG | 0.518865 | 1_2:+71640947 | Msa0089880:CDS |
| CAAGGCAAGGGAGAGAGAGT+TGG | 0.522099 | 1_2:+71642108 | Msa0089880:CDS |
| AAAGTTGCAGGCCTTACCAC+AGG | 0.522299 | 1_2:+71641778 | Msa0089880:CDS |
| TCAATACTCTTGAATAATGC+GGG | 0.525190 | 1_2:-71640260 | None:intergenic |
| AGCTAGAGAAGCAGCACACA+AGG | 0.526135 | 1_2:+71640296 | Msa0089880:CDS |
| TGAAAATAGAATAAAACTTG+TGG | 0.526849 | 1_2:+71641028 | Msa0089880:CDS |
| AACTTCTTTGTCTACATCAA+AGG | 0.529869 | 1_2:-71640739 | None:intergenic |
| TGATACAGATGAAAGTCATC+AGG | 0.531714 | 1_2:+71640860 | Msa0089880:CDS |
| TGATAGAAGAAAACAAAGAT+GGG | 0.532548 | 1_2:+71641711 | Msa0089880:CDS |
| CATTTCCAGGGATTATTGAG+AGG | 0.535528 | 1_2:+71640982 | Msa0089880:CDS |
| TCGAAGAGCTGCTTTGGTGG+AGG | 0.538284 | 1_2:+71640329 | Msa0089880:CDS |
| TGTGGCTCGCCGCAAGGCAA+GGG | 0.538751 | 1_2:+71642096 | Msa0089880:CDS |
| TCCTAAGCTCAATCCTCCCC+AGG | 0.539113 | 1_2:-71642137 | None:intergenic |
| ATTCATCTTTACTAAATGAA+GGG | 0.540162 | 1_2:-71640803 | None:intergenic |
| GCCTGGGGAGGATTGAGCTT+AGG | 0.544200 | 1_2:+71642136 | Msa0089880:CDS |
| TTCGAGGCAGCTGAGGCTAT+GGG | 0.544887 | 1_2:+71640603 | Msa0089880:CDS |
| GAATGAAACTAAATTAGGTA+AGG | 0.544978 | 1_2:+71641349 | Msa0089880:CDS |
| CTCAATACTCTTGAATAATG+CGG | 0.547525 | 1_2:-71640261 | None:intergenic |
| TTGCGAAAGTCAGCCTTGGA+TGG | 0.549215 | 1_2:+71641215 | Msa0089880:CDS |
| AGAAGCAGCACACAAGGCAA+TGG | 0.550484 | 1_2:+71640302 | Msa0089880:CDS |
| GGGATTGCGAAAGTCAGCCT+TGG | 0.552736 | 1_2:+71641211 | Msa0089880:CDS |
| TCTCATCTTTGTTGATAACA+AGG | 0.555873 | 1_2:+71642453 | Msa0089880:three_prime_UTR |
| ACAAATGAAGAAGGTGGTGG+TGG | 0.556403 | 1_2:+71641980 | Msa0089880:CDS |
| GATGACTTTCATCTGTATCA+GGG | 0.556725 | 1_2:-71640857 | None:intergenic |
| AAGAGGAGGAGAATCGGAAT+CGG | 0.556799 | 1_2:-71639543 | None:intergenic |
| AAGGGAGAGAGAGTTGGAAG+AGG | 0.560162 | 1_2:+71642114 | Msa0089880:CDS |
| GAGAAGGAGAAAATAAAGAC+CGG | 0.561086 | 1_2:+71641905 | Msa0089880:CDS |
| GCACGTGTCTAGGCTGGAGA+AGG | 0.562735 | 1_2:+71641889 | Msa0089880:CDS |
| GGTATTCTGCACTTCAGCCA+AGG | 0.563744 | 1_2:-71641138 | None:intergenic |
| CTCCAAGCTTGAACAAGACA+AGG | 0.570406 | 1_2:+71642180 | Msa0089880:CDS |
| ATTCCAAGATATCATTTCCA+GGG | 0.570612 | 1_2:+71640970 | Msa0089880:CDS |
| TTGGATGGAACATCGAGAAA+GGG | 0.571120 | 1_2:+71641230 | Msa0089880:CDS |
| AAATCAGGTATGCACTCTGA+TGG | 0.571370 | 1_2:-71641401 | None:intergenic |
| TTAGGTCAATCTACATCAAG+TGG | 0.579696 | 1_2:+71639977 | Msa0089880:CDS |
| AAGTCAGCAAAGGAAATGCT+AGG | 0.580927 | 1_2:+71641488 | Msa0089880:CDS |
| TCGGTGGAGTGATTCGTTGA+CGG | 0.581185 | 1_2:-71639524 | None:intergenic |
| AAGTGGATTCCTTCTTGGAG+AGG | 0.582173 | 1_2:+71640077 | Msa0089880:CDS |
| TTTGAGAATGAAGAGAACGA+TGG | 0.583104 | 1_2:-71639414 | None:intergenic |
| TCCTCTGTCAGATCCAAGAT+CGG | 0.585811 | 1_2:+71639581 | Msa0089880:CDS |
| TCACCGAAATAACCAGTTGG+AGG | 0.589084 | 1_2:+71641955 | Msa0089880:CDS |
| AGCAGCACACAAGGCAATGG+AGG | 0.589770 | 1_2:+71640305 | Msa0089880:CDS |
| AGGAGGAGAATCGGAATCGG+TGG | 0.591234 | 1_2:-71639540 | None:intergenic |
| TACAAACAAAGAAAGAGTCA+TGG | 0.594320 | 1_2:+71641818 | Msa0089880:CDS |
| AGAGAGTTGGAAGAGGCCTG+GGG | 0.597332 | 1_2:+71642121 | Msa0089880:CDS |
| TTGGAGGAGACAAATGAAGA+AGG | 0.601613 | 1_2:+71641971 | Msa0089880:CDS |
| GAGACAAATGAAGAAGGTGG+TGG | 0.603559 | 1_2:+71641977 | Msa0089880:CDS |
| AGCAAAGACTAAGTCAGCAA+AGG | 0.612039 | 1_2:+71641478 | Msa0089880:CDS |
| TCCGATCTTGGATCTGACAG+AGG | 0.612104 | 1_2:-71639582 | None:intergenic |
| TTAAAGCTGAAGCTGAGGAA+AGG | 0.616555 | 1_2:+71642377 | Msa0089880:CDS |
| CTGGATTAAAGCTGAAGCTG+AGG | 0.623687 | 1_2:+71642372 | Msa0089880:CDS |
| TTTGTTTGTAGTTTACAACC+CGG | 0.624513 | 1_2:-71641805 | None:intergenic |
| TGAAGCTTTCGAGGCAGCTG+AGG | 0.626348 | 1_2:+71640596 | Msa0089880:CDS |
| TTGGATCTGACAGAGGAGGT+AGG | 0.627509 | 1_2:-71639575 | None:intergenic |
| AGAAGGAGAAAATAAAGACC+GGG | 0.630842 | 1_2:+71641906 | Msa0089880:CDS |
| ACTCTCTCTCCCTTGCCTTG+CGG | 0.631262 | 1_2:-71642105 | None:intergenic |
| ACAGAGGAGGTAGGAGAACG+AGG | 0.631376 | 1_2:-71639566 | None:intergenic |
| GAGGAGACAAATGAAGAAGG+TGG | 0.632733 | 1_2:+71641974 | Msa0089880:CDS |
| GATTCTTCTCCAATAATAGA+GGG | 0.635892 | 1_2:-71640681 | None:intergenic |
| CATGACAAGACTTGAAAGAG+AGG | 0.639854 | 1_2:+71641301 | Msa0089880:CDS |
| TGAGGAAAGGAAGCAAGCAA+TGG | 0.648935 | 1_2:+71642390 | Msa0089880:CDS |
| GAGTTGGAAGAGGCCTGGGG+AGG | 0.655185 | 1_2:+71642124 | Msa0089880:CDS |
| AAGTTGCAGGCCTTACCACA+GGG | 0.659562 | 1_2:+71641779 | Msa0089880:CDS |
| GCATCAAGTGGCATGCCTAG+AGG | 0.665651 | 1_2:+71641512 | Msa0089880:CDS |
| GGAACATCGAGAAAGGGTCA+AGG | 0.669835 | 1_2:+71641236 | Msa0089880:CDS |
| ATAAAGACCGGGAATGAATG+GGG | 0.672017 | 1_2:+71641917 | Msa0089880:CDS |
| AAGTCACCGAAATAACCAGT+TGG | 0.673763 | 1_2:+71641952 | Msa0089880:CDS |
| TGTCAGATCCAAGATCGGAA+AGG | 0.677182 | 1_2:+71639586 | Msa0089880:CDS |
| TGTGCAGAATAAATTGACGA+AGG | 0.678945 | 1_2:+71639952 | Msa0089880:intron |
| TTTACAACCCGGCTTCCCTG+TGG | 0.683710 | 1_2:-71641794 | None:intergenic |
| GATCTTGGATCTGACAGAGG+AGG | 0.695341 | 1_2:-71639579 | None:intergenic |
| GAAATGCTAGGAGCATCAAG+TGG | 0.709128 | 1_2:+71641500 | Msa0089880:CDS |
| TTGTGGATATGATGATTGAG+CGG | 0.720856 | 1_2:+71641045 | Msa0089880:CDS |
| AGAAGTACTAGGCTTAGACA+AGG | 0.745820 | 1_2:+71641550 | Msa0089880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAAAATTGATATTTA+AGG | - | chr1_2:71639633-71639652 | None:intergenic | 10.0% |
| !! | TTATATTTATAAAGCTAAAT+TGG | + | chr1_2:71639833-71639852 | Msa0089880:intron | 10.0% |
| !! | CAAAAAGAAAAAATTAAAAT+GGG | - | chr1_2:71642259-71642278 | None:intergenic | 10.0% |
| !!! | CAATAATACATTATCATTTT+CGG | + | chr1_2:71639447-71639466 | Msa0089880:five_prime_UTR | 15.0% |
| !! | TAAAATTGATATTTAAGGAA+TGG | - | chr1_2:71639628-71639647 | None:intergenic | 15.0% |
| !! | GCAAAAAGAAAAAATTAAAA+TGG | - | chr1_2:71642260-71642279 | None:intergenic | 15.0% |
| !!! | CGAAAATGATAATGTATTAT+TGG | - | chr1_2:71639449-71639468 | None:intergenic | 20.0% |
| !! | AATTGAAACTCATCAATTTA+GGG | - | chr1_2:71639688-71639707 | None:intergenic | 20.0% |
| !! | AATATAACAAGTAATCTCTA+AGG | - | chr1_2:71639820-71639839 | None:intergenic | 20.0% |
| !! | AAGCTTAATGCAAATAAAAT+AGG | + | chr1_2:71640386-71640405 | Msa0089880:intron | 20.0% |
| !!! | ATTTACAAATCTTTGAAAAC+AGG | + | chr1_2:71640444-71640463 | Msa0089880:intron | 20.0% |
| !! | ATTCATCTTTACTAAATGAA+GGG | - | chr1_2:71640806-71640825 | None:intergenic | 20.0% |
| !! | AATTCATCTTTACTAAATGA+AGG | - | chr1_2:71640807-71640826 | None:intergenic | 20.0% |
| !! | TGAAAATAGAATAAAACTTG+TGG | + | chr1_2:71641028-71641047 | Msa0089880:CDS | 20.0% |
| !! | GCTTAACTAAAAATTTATCT+AGG | - | chr1_2:71641280-71641299 | None:intergenic | 20.0% |
| !! | ATTTATGTTTAACCAAAACT+TGG | - | chr1_2:71642012-71642031 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTGCTTTCT+AGG | + | chr1_2:71642345-71642364 | Msa0089880:intron | 20.0% |
| !! | GTAATCAGAATTTTCAACAA+TGG | + | chr1_2:71639481-71639500 | Msa0089880:exon | 25.0% |
| ! | AATTGATATTTAAGGAATGG+TGG | - | chr1_2:71639625-71639644 | None:intergenic | 25.0% |
| !!! | ATCAATTTAGGGTTTTGAAT+CGG | - | chr1_2:71639677-71639696 | None:intergenic | 25.0% |
| ! | CAATTGAAACTCATCAATTT+AGG | - | chr1_2:71639689-71639708 | None:intergenic | 25.0% |
| ! | AACAAACTATGATCTATATC+TGG | - | chr1_2:71639722-71639741 | None:intergenic | 25.0% |
| ! | AATAAATTGACGAAGGAATT+AGG | + | chr1_2:71639959-71639978 | Msa0089880:CDS | 25.0% |
| !! | AGTTAATAGGAGAAGTTTTA+CGG | - | chr1_2:71640042-71640061 | None:intergenic | 25.0% |
| ! | TTAATGCAAATAAAATAGGC+TGG | + | chr1_2:71640390-71640409 | Msa0089880:intron | 25.0% |
| ! | AAACCATATTGAAAGTTATG+TGG | + | chr1_2:71640467-71640486 | Msa0089880:intron | 25.0% |
| ! | GTAAACACCAATAAAATTCT+CGG | - | chr1_2:71640520-71640539 | None:intergenic | 25.0% |
| !!! | AGAATTTTATTGGTGTTTAC+AGG | + | chr1_2:71640520-71640539 | Msa0089880:intron | 25.0% |
| ! | ACTAAAAATTTATCTAGGCT+AGG | - | chr1_2:71641275-71641294 | None:intergenic | 25.0% |
| !! | CTAATTTAGTTTCATTCCTA+TGG | - | chr1_2:71641346-71641365 | None:intergenic | 25.0% |
| ! | CATAGGAATGAAACTAAATT+AGG | + | chr1_2:71641344-71641363 | Msa0089880:CDS | 25.0% |
| ! | GAATGAAACTAAATTAGGTA+AGG | + | chr1_2:71641349-71641368 | Msa0089880:CDS | 25.0% |
| ! | ATGATAGAAGAAAACAAAGA+TGG | + | chr1_2:71641710-71641729 | Msa0089880:CDS | 25.0% |
| ! | TGATAGAAGAAAACAAAGAT+GGG | + | chr1_2:71641711-71641730 | Msa0089880:CDS | 25.0% |
| !!! | TTTGTTGATAACAAGGAATT+TGG | + | chr1_2:71642460-71642479 | Msa0089880:three_prime_UTR | 25.0% |
| ! | AACAACATTTACACATTCAA+TGG | - | chr1_2:71642488-71642507 | None:intergenic | 25.0% |
| ! | ATATTTAAGGAATGGTGGAA+TGG | - | chr1_2:71639620-71639639 | None:intergenic | 30.0% |
| ! | TTGATAGTTTAGGGACTAAA+TGG | + | chr1_2:71639863-71639882 | Msa0089880:intron | 30.0% |
| AAAAGTTATCGTCACAAATC+AGG | + | chr1_2:71640005-71640024 | Msa0089880:CDS | 30.0% | |
| GTAAAACTTCTCCTATTAAC+TGG | + | chr1_2:71640041-71640060 | Msa0089880:CDS | 30.0% | |
| ! | AAATTAAGATGCTTCAGGTT+TGG | + | chr1_2:71640101-71640120 | Msa0089880:intron | 30.0% |
| GATATACGTTTCTCATATTC+AGG | + | chr1_2:71640188-71640207 | Msa0089880:intron | 30.0% | |
| TCAATACTCTTGAATAATGC+GGG | - | chr1_2:71640263-71640282 | None:intergenic | 30.0% | |
| CTCAATACTCTTGAATAATG+CGG | - | chr1_2:71640264-71640283 | None:intergenic | 30.0% | |
| !! | GCATTATTCAAGAGTATTGA+GGG | + | chr1_2:71640263-71640282 | Msa0089880:CDS | 30.0% |
| TTGCCACATAACTTTCAATA+TGG | - | chr1_2:71640473-71640492 | None:intergenic | 30.0% | |
| ! | CTGAAAACCGAGAATTTTAT+TGG | + | chr1_2:71640510-71640529 | Msa0089880:intron | 30.0% |
| TCTATTTGACAATGCTTCTT+TGG | - | chr1_2:71640657-71640676 | None:intergenic | 30.0% | |
| GATTCTTCTCCAATAATAGA+GGG | - | chr1_2:71640684-71640703 | None:intergenic | 30.0% | |
| TGATTCTTCTCCAATAATAG+AGG | - | chr1_2:71640685-71640704 | None:intergenic | 30.0% | |
| AACTTCTTTGTCTACATCAA+AGG | - | chr1_2:71640742-71640761 | None:intergenic | 30.0% | |
| ATTCCAAGATATCATTTCCA+GGG | + | chr1_2:71640970-71640989 | Msa0089880:CDS | 30.0% | |
| GGAAAATTAATTGCTGGATT+GGG | - | chr1_2:71641170-71641189 | None:intergenic | 30.0% | |
| TGGAAAATTAATTGCTGGAT+TGG | - | chr1_2:71641171-71641190 | None:intergenic | 30.0% | |
| ! | TTCATTCCTATGGTTTTTCT+TGG | - | chr1_2:71641336-71641355 | None:intergenic | 30.0% |
| ! | TCTCAAACTTTTGTTCTCAT+TGG | - | chr1_2:71641636-71641655 | None:intergenic | 30.0% |
| TTTGTTTGTAGTTTACAACC+CGG | - | chr1_2:71641808-71641827 | None:intergenic | 30.0% | |
| TACAAACAAAGAAAGAGTCA+TGG | + | chr1_2:71641818-71641837 | Msa0089880:CDS | 30.0% | |
| TTTATCCAAACTCTCACATT+CGG | - | chr1_2:71641858-71641877 | None:intergenic | 30.0% | |
| ! | TGAGAGTTTGGATAAAGTTT+TGG | + | chr1_2:71641862-71641881 | Msa0089880:CDS | 30.0% |
| !!! | TAACCCAATTAGTTTTTCTG+TGG | + | chr1_2:71642078-71642097 | Msa0089880:CDS | 30.0% |
| !! | TCTCATCTTTGTTGATAACA+AGG | + | chr1_2:71642453-71642472 | Msa0089880:three_prime_UTR | 30.0% |
| TTTGAGAATGAAGAGAACGA+TGG | - | chr1_2:71639417-71639436 | None:intergenic | 35.0% | |
| !! | TGGAGAGATGTTGATAGTTT+AGG | + | chr1_2:71639853-71639872 | Msa0089880:intron | 35.0% |
| !! | GGAGAGATGTTGATAGTTTA+GGG | + | chr1_2:71639854-71639873 | Msa0089880:intron | 35.0% |
| TAGTTTAGGGACTAAATGGA+TGG | + | chr1_2:71639867-71639886 | Msa0089880:intron | 35.0% | |
| TGTGCAGAATAAATTGACGA+AGG | + | chr1_2:71639952-71639971 | Msa0089880:intron | 35.0% | |
| TTAGGTCAATCTACATCAAG+TGG | + | chr1_2:71639977-71639996 | Msa0089880:CDS | 35.0% | |
| ! | CAAAAAAGTGGATTCCTTCT+TGG | + | chr1_2:71640072-71640091 | Msa0089880:CDS | 35.0% |
| ! | CTTAATTTTCCTCTCCAAGA+AGG | - | chr1_2:71640089-71640108 | None:intergenic | 35.0% |
| GAGGAAAATTAAGATGCTTC+AGG | + | chr1_2:71640096-71640115 | Msa0089880:CDS | 35.0% | |
| TCTCATATTCAGGAAGTAGA+TGG | + | chr1_2:71640198-71640217 | Msa0089880:intron | 35.0% | |
| !! | CGCATTATTCAAGAGTATTG+AGG | + | chr1_2:71640262-71640281 | Msa0089880:CDS | 35.0% |
| !! | AAGAGTATTGAGGGAGAAAA+TGG | + | chr1_2:71640272-71640291 | Msa0089880:CDS | 35.0% |
| AGCAGAAGCTCAACTATTAA+TGG | + | chr1_2:71640557-71640576 | Msa0089880:CDS | 35.0% | |
| ACAATGCTTCTTTGGACAAT+CGG | - | chr1_2:71640649-71640668 | None:intergenic | 35.0% | |
| ATAGAGACACCCTCTATTAT+TGG | + | chr1_2:71640672-71640691 | Msa0089880:CDS | 35.0% | |
| GATGACTTTCATCTGTATCA+GGG | - | chr1_2:71640860-71640879 | None:intergenic | 35.0% | |
| TGATGACTTTCATCTGTATC+AGG | - | chr1_2:71640861-71640880 | None:intergenic | 35.0% | |
| TGATACAGATGAAAGTCATC+AGG | + | chr1_2:71640860-71640879 | Msa0089880:CDS | 35.0% | |
| ! | AGACTTGAGTTCACTCTTTT+GGG | - | chr1_2:71640940-71640959 | None:intergenic | 35.0% |
| GATTCCAAGATATCATTTCC+AGG | + | chr1_2:71640969-71640988 | Msa0089880:CDS | 35.0% | |
| AATCCCTGGAAATGATATCT+TGG | - | chr1_2:71640976-71640995 | None:intergenic | 35.0% | |
| GGATTATTGAGAGGAAAAGT+AGG | + | chr1_2:71640991-71641010 | Msa0089880:CDS | 35.0% | |
| TTGTGGATATGATGATTGAG+CGG | + | chr1_2:71641045-71641064 | Msa0089880:CDS | 35.0% | |
| GCAACTATAGTTGCAACTTA+TGG | + | chr1_2:71641104-71641123 | Msa0089880:CDS | 35.0% | |
| TTATGGTTTAAATGCTGCCT+TGG | + | chr1_2:71641121-71641140 | Msa0089880:CDS | 35.0% | |
| CTTGCTGGAAAATTAATTGC+TGG | - | chr1_2:71641176-71641195 | None:intergenic | 35.0% | |
| AGCTCTTGTAAATCTGTTGA+TGG | + | chr1_2:71641374-71641393 | Msa0089880:CDS | 35.0% | |
| !! | AAAGATCACACAGAAGTACT+AGG | + | chr1_2:71641539-71641558 | Msa0089880:CDS | 35.0% |
| ACATGTCTCAAGACTTGAAA+AGG | + | chr1_2:71641583-71641602 | Msa0089880:CDS | 35.0% | |
| AAGACTTGAAAAGGAAGTTC+AGG | + | chr1_2:71641592-71641611 | Msa0089880:CDS | 35.0% | |
| TAATGCTTCACCAGAAGAAA+AGG | - | chr1_2:71641663-71641682 | None:intergenic | 35.0% | |
| AGAAGAAAACAAAGATGGGT+TGG | + | chr1_2:71641715-71641734 | Msa0089880:CDS | 35.0% | |
| ATTGGAAAGAGAAAAGTTGC+AGG | + | chr1_2:71641766-71641785 | Msa0089880:CDS | 35.0% | |
| GAGAAGGAGAAAATAAAGAC+CGG | + | chr1_2:71641905-71641924 | Msa0089880:CDS | 35.0% | |
| AGAAGGAGAAAATAAAGACC+GGG | + | chr1_2:71641906-71641925 | Msa0089880:CDS | 35.0% | |
| AAATAAAGACCGGGAATGAA+TGG | + | chr1_2:71641915-71641934 | Msa0089880:CDS | 35.0% | |
| AATAAAGACCGGGAATGAAT+GGG | + | chr1_2:71641916-71641935 | Msa0089880:CDS | 35.0% | |
| GAGCCACAGAAAAACTAATT+GGG | - | chr1_2:71642084-71642103 | None:intergenic | 35.0% | |
| !! | TTTAGTGCTGTTTGACACTT+TGG | + | chr1_2:71642207-71642226 | Msa0089880:intron | 35.0% |
| ! | TAAGGAATGGTGGAATGGTA+GGG | - | chr1_2:71639615-71639634 | None:intergenic | 40.0% |
| ! | TTAAGGAATGGTGGAATGGT+AGG | - | chr1_2:71639616-71639635 | None:intergenic | 40.0% |
| !!! | GGGTTTTGAATCGGTAAACA+AGG | - | chr1_2:71639668-71639687 | None:intergenic | 40.0% |
| !!! | AAGGAATCCACTTTTTTGCG+CGG | - | chr1_2:71640070-71640089 | None:intergenic | 40.0% |
| TTGCATTAAGCTTTACCTCG+CGG | - | chr1_2:71640379-71640398 | None:intergenic | 40.0% | |
| ATAGGCTGGACATTAGTTGT+CGG | + | chr1_2:71640404-71640423 | Msa0089880:intron | 40.0% | |
| CAATGCTTCTTTGGACAATC+GGG | - | chr1_2:71640648-71640667 | None:intergenic | 40.0% | |
| ! | CAGACTTGAGTTCACTCTTT+TGG | - | chr1_2:71640941-71640960 | None:intergenic | 40.0% |
| TGAACTCAAGTCTGAAGACT+TGG | + | chr1_2:71640947-71640966 | Msa0089880:CDS | 40.0% | |
| CATTTCCAGGGATTATTGAG+AGG | + | chr1_2:71640982-71641001 | Msa0089880:CDS | 40.0% | |
| ! | CTTTTCCTCTCAATAATCCC+TGG | - | chr1_2:71640990-71641009 | None:intergenic | 40.0% |
| CGAAGATGAACTTTCTTCTC+TGG | + | chr1_2:71641082-71641101 | Msa0089880:CDS | 40.0% | |
| AATGACGACATTCTTCTTGC+TGG | - | chr1_2:71641191-71641210 | None:intergenic | 40.0% | |
| AGCAAGAAGAATGTCGTCAT+TGG | + | chr1_2:71641190-71641209 | Msa0089880:CDS | 40.0% | |
| GCAAGAAGAATGTCGTCATT+GGG | + | chr1_2:71641191-71641210 | Msa0089880:CDS | 40.0% | |
| TTGGATGGAACATCGAGAAA+GGG | + | chr1_2:71641230-71641249 | Msa0089880:CDS | 40.0% | |
| CATGACAAGACTTGAAAGAG+AGG | + | chr1_2:71641301-71641320 | Msa0089880:CDS | 40.0% | |
| GTGAAGCCAAGAAAAACCAT+AGG | + | chr1_2:71641327-71641346 | Msa0089880:CDS | 40.0% | |
| AAATCAGGTATGCACTCTGA+TGG | - | chr1_2:71641404-71641423 | None:intergenic | 40.0% | |
| ATCAGAGTGCATACCTGATT+TGG | + | chr1_2:71641403-71641422 | Msa0089880:CDS | 40.0% | |
| TCAGAGTGCATACCTGATTT+GGG | + | chr1_2:71641404-71641423 | Msa0089880:CDS | 40.0% | |
| !! | ACCTGATTTGGGAAGTATTC+TGG | + | chr1_2:71641415-71641434 | Msa0089880:CDS | 40.0% |
| ACCAGAATACTTCCCAAATC+AGG | - | chr1_2:71641419-71641438 | None:intergenic | 40.0% | |
| AGCAAAGACTAAGTCAGCAA+AGG | + | chr1_2:71641478-71641497 | Msa0089880:CDS | 40.0% | |
| AAGTCAGCAAAGGAAATGCT+AGG | + | chr1_2:71641488-71641507 | Msa0089880:CDS | 40.0% | |
| ! | GTGTGATCTTTTTGACCTCT+AGG | - | chr1_2:71641530-71641549 | None:intergenic | 40.0% |
| !! | AGAAGTACTAGGCTTAGACA+AGG | + | chr1_2:71641550-71641569 | Msa0089880:CDS | 40.0% |
| !! | CTCATTGGCTGTTCTTTTTC+TGG | - | chr1_2:71641621-71641640 | None:intergenic | 40.0% |
| ! | TTGAGATCGACCTTTTCTTC+TGG | + | chr1_2:71641650-71641669 | Msa0089880:CDS | 40.0% |
| !!! | AGATGGGTTGGAGAAGATTT+TGG | + | chr1_2:71641727-71641746 | Msa0089880:CDS | 40.0% |
| TCTCTTTCCAATCTATGTGC+TGG | - | chr1_2:71641758-71641777 | None:intergenic | 40.0% | |
| !! | TTTTGGTTAAGCACGTGTCT+AGG | + | chr1_2:71641879-71641898 | Msa0089880:CDS | 40.0% |
| ATAAAGACCGGGAATGAATG+GGG | + | chr1_2:71641917-71641936 | Msa0089880:CDS | 40.0% | |
| AAGTCACCGAAATAACCAGT+TGG | + | chr1_2:71641952-71641971 | Msa0089880:CDS | 40.0% | |
| TCTCCTCCAACTGGTTATTT+CGG | - | chr1_2:71641961-71641980 | None:intergenic | 40.0% | |
| TTGGAGGAGACAAATGAAGA+AGG | + | chr1_2:71641971-71641990 | Msa0089880:CDS | 40.0% | |
| ! | CATCTTTTCTCTCTCAAGTC+TGG | - | chr1_2:71642035-71642054 | None:intergenic | 40.0% |
| CGAGCCACAGAAAAACTAAT+TGG | - | chr1_2:71642085-71642104 | None:intergenic | 40.0% | |
| TGTTCAAGCTTGGAGACATT+AGG | - | chr1_2:71642175-71642194 | None:intergenic | 40.0% | |
| ! | AACCTTGTCTTGTTCAAGCT+TGG | - | chr1_2:71642185-71642204 | None:intergenic | 40.0% |
| TTAAAGCTGAAGCTGAGGAA+AGG | + | chr1_2:71642377-71642396 | Msa0089880:CDS | 40.0% | |
| AAGAGGAGGAGAATCGGAAT+CGG | - | chr1_2:71639546-71639565 | None:intergenic | 45.0% | |
| TCCTCTGTCAGATCCAAGAT+CGG | + | chr1_2:71639581-71639600 | Msa0089880:CDS | 45.0% | |
| TGTCAGATCCAAGATCGGAA+AGG | + | chr1_2:71639586-71639605 | Msa0089880:CDS | 45.0% | |
| TAGGGTTACCTTTCCGATCT+TGG | - | chr1_2:71639597-71639616 | None:intergenic | 45.0% | |
| ! | ATAGGAGAAGTTTTACGGCG+TGG | - | chr1_2:71640037-71640056 | None:intergenic | 45.0% |
| TTGCGCGGAAACCAGTTAAT+AGG | - | chr1_2:71640055-71640074 | None:intergenic | 45.0% | |
| ! | AAGTGGATTCCTTCTTGGAG+AGG | + | chr1_2:71640077-71640096 | Msa0089880:CDS | 45.0% |
| TGAGCTTCTGCTTCATCACT+GGG | - | chr1_2:71640549-71640568 | None:intergenic | 45.0% | |
| TTGAGCTTCTGCTTCATCAC+TGG | - | chr1_2:71640550-71640569 | None:intergenic | 45.0% | |
| AAGTGCAACTGAAGCTTTCG+AGG | + | chr1_2:71640587-71640606 | Msa0089880:CDS | 45.0% | |
| !!! | AGTTCACTCTTTTGGGACAC+TGG | - | chr1_2:71640933-71640952 | None:intergenic | 45.0% |
| CTTTCTCGATGTTCCATCCA+AGG | - | chr1_2:71641231-71641250 | None:intergenic | 45.0% | |
| CTTGGATGGAACATCGAGAA+AGG | + | chr1_2:71641229-71641248 | Msa0089880:CDS | 45.0% | |
| !! | GAAATGCTAGGAGCATCAAG+TGG | + | chr1_2:71641500-71641519 | Msa0089880:CDS | 45.0% |
| GGTAAAGCCAGCACATAGAT+TGG | + | chr1_2:71641748-71641767 | Msa0089880:CDS | 45.0% | |
| TGTGTCCGAATGTGAGAGTT+TGG | + | chr1_2:71641850-71641869 | Msa0089880:CDS | 45.0% | |
| TCACCGAAATAACCAGTTGG+AGG | + | chr1_2:71641955-71641974 | Msa0089880:CDS | 45.0% | |
| CTTCATTTGTCTCCTCCAAC+TGG | - | chr1_2:71641970-71641989 | None:intergenic | 45.0% | |
| GAGGAGACAAATGAAGAAGG+TGG | + | chr1_2:71641974-71641993 | Msa0089880:CDS | 45.0% | |
| GAGACAAATGAAGAAGGTGG+TGG | + | chr1_2:71641977-71641996 | Msa0089880:CDS | 45.0% | |
| ! | ACAAATGAAGAAGGTGGTGG+TGG | + | chr1_2:71641980-71641999 | Msa0089880:CDS | 45.0% |
| CTTGGAGACATTAGGCTTCA+TGG | - | chr1_2:71642167-71642186 | None:intergenic | 45.0% | |
| CTCCAAGCTTGAACAAGACA+AGG | + | chr1_2:71642180-71642199 | Msa0089880:CDS | 45.0% | |
| ! | CTCAGCTTCAGCTTTAATCC+AGG | - | chr1_2:71642374-71642393 | None:intergenic | 45.0% |
| CTGGATTAAAGCTGAAGCTG+AGG | + | chr1_2:71642372-71642391 | Msa0089880:CDS | 45.0% | |
| TGAGGAAAGGAAGCAAGCAA+TGG | + | chr1_2:71642390-71642409 | Msa0089880:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAAAC+AGG | - | chr1_2:71642335-71642354 | None:intergenic | 5.0% |
| TCGGTGGAGTGATTCGTTGA+CGG | - | chr1_2:71639527-71639546 | None:intergenic | 50.0% | |
| ACGAGGAAGAGGAGGAGAAT+CGG | - | chr1_2:71639552-71639571 | None:intergenic | 50.0% | |
| TTGGATCTGACAGAGGAGGT+AGG | - | chr1_2:71639578-71639597 | None:intergenic | 50.0% | |
| GATCTTGGATCTGACAGAGG+AGG | - | chr1_2:71639582-71639601 | None:intergenic | 50.0% | |
| TCCGATCTTGGATCTGACAG+AGG | - | chr1_2:71639585-71639604 | None:intergenic | 50.0% | |
| CTGGTTTCCGCGCAAAAAAG+TGG | + | chr1_2:71640060-71640079 | Msa0089880:CDS | 50.0% | |
| AGCTAGAGAAGCAGCACACA+AGG | + | chr1_2:71640296-71640315 | Msa0089880:CDS | 50.0% | |
| AGAAGCAGCACACAAGGCAA+TGG | + | chr1_2:71640302-71640321 | Msa0089880:CDS | 50.0% | |
| GGTATTCTGCACTTCAGCCA+AGG | - | chr1_2:71641141-71641160 | None:intergenic | 50.0% | |
| ! | AATTGCTGGATTGGGCTGCT+TGG | - | chr1_2:71641162-71641181 | None:intergenic | 50.0% |
| TTGCGAAAGTCAGCCTTGGA+TGG | + | chr1_2:71641215-71641234 | Msa0089880:CDS | 50.0% | |
| GGAACATCGAGAAAGGGTCA+AGG | + | chr1_2:71641236-71641255 | Msa0089880:CDS | 50.0% | |
| AAAGTTGCAGGCCTTACCAC+AGG | + | chr1_2:71641778-71641797 | Msa0089880:CDS | 50.0% | |
| AAGTTGCAGGCCTTACCACA+GGG | + | chr1_2:71641779-71641798 | Msa0089880:CDS | 50.0% | |
| AACTTCGCCCCATTCATTCC+CGG | - | chr1_2:71641927-71641946 | None:intergenic | 50.0% | |
| ! | TGGTGGTCTGGACCAAGTTT+TGG | + | chr1_2:71641997-71642016 | Msa0089880:CDS | 50.0% |
| AAGGGAGAGAGAGTTGGAAG+AGG | + | chr1_2:71642114-71642133 | Msa0089880:CDS | 50.0% | |
| TTCTTGCTTTCTAGGCTGCC+TGG | + | chr1_2:71642353-71642372 | Msa0089880:intron | 50.0% | |
| AGGAGGAGAATCGGAATCGG+TGG | - | chr1_2:71639543-71639562 | None:intergenic | 55.0% | |
| GTAGGAGAACGAGGAAGAGG+AGG | - | chr1_2:71639560-71639579 | None:intergenic | 55.0% | |
| GAGGTAGGAGAACGAGGAAG+AGG | - | chr1_2:71639563-71639582 | None:intergenic | 55.0% | |
| ACAGAGGAGGTAGGAGAACG+AGG | - | chr1_2:71639569-71639588 | None:intergenic | 55.0% | |
| ! | GGAGAAGTTTTACGGCGTGG+AGG | - | chr1_2:71640034-71640053 | None:intergenic | 55.0% |
| AGCAGCACACAAGGCAATGG+AGG | + | chr1_2:71640305-71640324 | Msa0089880:CDS | 55.0% | |
| ! | TCGAAGAGCTGCTTTGGTGG+AGG | + | chr1_2:71640329-71640348 | Msa0089880:CDS | 55.0% |
| !! | CTGCTTTGGTGGAGGCATCT+TGG | + | chr1_2:71640337-71640356 | Msa0089880:CDS | 55.0% |
| ACCTCGCGGCGCGTAAAATT+CGG | - | chr1_2:71640365-71640384 | None:intergenic | 55.0% | |
| TGAAGCTTTCGAGGCAGCTG+AGG | + | chr1_2:71640596-71640615 | Msa0089880:CDS | 55.0% | |
| TTTCGAGGCAGCTGAGGCTA+TGG | + | chr1_2:71640602-71640621 | Msa0089880:CDS | 55.0% | |
| TTCGAGGCAGCTGAGGCTAT+GGG | + | chr1_2:71640603-71640622 | Msa0089880:CDS | 55.0% | |
| ! | TGAAGGGCGTGTTGCAAGCT+TGG | - | chr1_2:71640790-71640809 | None:intergenic | 55.0% |
| GGGATTGCGAAAGTCAGCCT+TGG | + | chr1_2:71641211-71641230 | Msa0089880:CDS | 55.0% | |
| GCATCAAGTGGCATGCCTAG+AGG | + | chr1_2:71641512-71641531 | Msa0089880:CDS | 55.0% | |
| TTTACAACCCGGCTTCCCTG+TGG | - | chr1_2:71641797-71641816 | None:intergenic | 55.0% | |
| GGTTAAGCACGTGTCTAGGC+TGG | + | chr1_2:71641883-71641902 | Msa0089880:CDS | 55.0% | |
| !! | TGAAGAAGGTGGTGGTGGTC+TGG | + | chr1_2:71641985-71642004 | Msa0089880:CDS | 55.0% |
| ! | TTTTTCTGTGGCTCGCCGCA+AGG | + | chr1_2:71642090-71642109 | Msa0089880:CDS | 55.0% |
| ACTCTCTCTCCCTTGCCTTG+CGG | - | chr1_2:71642108-71642127 | None:intergenic | 55.0% | |
| CAAGGCAAGGGAGAGAGAGT+TGG | + | chr1_2:71642108-71642127 | Msa0089880:CDS | 55.0% | |
| AGAGAGAGTTGGAAGAGGCC+TGG | + | chr1_2:71642119-71642138 | Msa0089880:CDS | 55.0% | |
| GAGAGAGTTGGAAGAGGCCT+GGG | + | chr1_2:71642120-71642139 | Msa0089880:CDS | 55.0% | |
| AGAGAGTTGGAAGAGGCCTG+GGG | + | chr1_2:71642121-71642140 | Msa0089880:CDS | 55.0% | |
| TCCTAAGCTCAATCCTCCCC+AGG | - | chr1_2:71642140-71642159 | None:intergenic | 55.0% | |
| GGAGGCTCGAAGAGCTGCTT+TGG | + | chr1_2:71640323-71640342 | Msa0089880:CDS | 60.0% | |
| ! | GGCTCGAAGAGCTGCTTTGG+TGG | + | chr1_2:71640326-71640345 | Msa0089880:CDS | 60.0% |
| AGGCCTTACCACAGGGAAGC+CGG | + | chr1_2:71641786-71641805 | Msa0089880:CDS | 60.0% | |
| AACCCGGCTTCCCTGTGGTA+AGG | - | chr1_2:71641792-71641811 | None:intergenic | 60.0% | |
| GCACGTGTCTAGGCTGGAGA+AGG | + | chr1_2:71641889-71641908 | Msa0089880:CDS | 60.0% | |
| GCCTGGGGAGGATTGAGCTT+AGG | + | chr1_2:71642136-71642155 | Msa0089880:CDS | 60.0% | |
| ! | GCCGAATTTTACGCGCCGCG+AGG | + | chr1_2:71640361-71640380 | Msa0089880:CDS | 65.0% |
| GGCCTTACCACAGGGAAGCC+GGG | + | chr1_2:71641787-71641806 | Msa0089880:CDS | 65.0% | |
| TGTGGCTCGCCGCAAGGCAA+GGG | + | chr1_2:71642096-71642115 | Msa0089880:CDS | 65.0% | |
| GAGTTGGAAGAGGCCTGGGG+AGG | + | chr1_2:71642124-71642143 | Msa0089880:CDS | 65.0% | |
| CTGTGGCTCGCCGCAAGGCA+AGG | + | chr1_2:71642095-71642114 | Msa0089880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71639407 | 71642545 | 71639407 | ID=Msa0089880;Name=Msa0089880 |
| chr1_2 | mRNA | 71639407 | 71642545 | 71639407 | ID=Msa0089880-mRNA-1;Parent=Msa0089880;Name=Msa0089880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=93|1|1|1|1|1|5|122|718 |
| chr1_2 | exon | 71639407 | 71639607 | 71639407 | ID=Msa0089880-mRNA-1:exon:24683;Parent=Msa0089880-mRNA-1 |
| chr1_2 | exon | 71639959 | 71640117 | 71639959 | ID=Msa0089880-mRNA-1:exon:24684;Parent=Msa0089880-mRNA-1 |
| chr1_2 | exon | 71640210 | 71640382 | 71640210 | ID=Msa0089880-mRNA-1:exon:24685;Parent=Msa0089880-mRNA-1 |
| chr1_2 | exon | 71640542 | 71642201 | 71640542 | ID=Msa0089880-mRNA-1:exon:24686;Parent=Msa0089880-mRNA-1 |
| chr1_2 | exon | 71642367 | 71642545 | 71642367 | ID=Msa0089880-mRNA-1:exon:24687;Parent=Msa0089880-mRNA-1 |
| chr1_2 | five_prime_UTR | 71639407 | 71639499 | 71639407 | ID=Msa0089880-mRNA-1:five_prime_utr;Parent=Msa0089880-mRNA-1 |
| chr1_2 | CDS | 71639500 | 71639607 | 71639500 | ID=Msa0089880-mRNA-1:cds;Parent=Msa0089880-mRNA-1 |
| chr1_2 | CDS | 71639959 | 71640117 | 71639959 | ID=Msa0089880-mRNA-1:cds;Parent=Msa0089880-mRNA-1 |
| chr1_2 | CDS | 71640210 | 71640382 | 71640210 | ID=Msa0089880-mRNA-1:cds;Parent=Msa0089880-mRNA-1 |
| chr1_2 | CDS | 71640542 | 71642201 | 71640542 | ID=Msa0089880-mRNA-1:cds;Parent=Msa0089880-mRNA-1 |
| chr1_2 | CDS | 71642367 | 71642423 | 71642367 | ID=Msa0089880-mRNA-1:cds;Parent=Msa0089880-mRNA-1 |
| chr1_2 | three_prime_UTR | 71642424 | 71642545 | 71642424 | ID=Msa0089880-mRNA-1:three_prime_utr;Parent=Msa0089880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
