Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137580 | sp|Q6S591|JAG_ARATH | 54.795 | 146 | 48 | 4 | 82 | 223 | 1 | 132 | 1.82e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137580 | A0A072VQB0 | 93.557 | 357 | 6 | 4 | 3 | 354 | 30 | 374 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043720 | Msa0137580 | 0.838873 | 2.219732e-57 | -8.615850e-47 |
| Msa0090110 | Msa0137580 | 0.843625 | 1.248910e-58 | -8.615850e-47 |
| Msa0137580 | Msa0182580 | 0.847893 | 8.667075e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137580 | MtrunA17_Chr1g0209781 | 98.701 | 154 | 1 | 1 | 202 | 354 | 1 | 154 | 8.21e-108 | 311 |
| Msa0137580 | MtrunA17_Chr1g0209791 | 100.000 | 71 | 0 | 0 | 115 | 185 | 7 | 77 | 6.42e-47 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137580 | AT1G68480.1 | 54.795 | 146 | 48 | 4 | 82 | 223 | 1 | 132 | 1.85e-36 | 132 |
| Msa0137580 | AT1G13400.1 | 40.807 | 223 | 91 | 13 | 85 | 299 | 5 | 194 | 2.69e-24 | 99.4 |
Find 96 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAAATTGTTAAGATCTAA+TGG | 0.262058 | 1_3:+70089948 | None:intergenic |
| TTGATCAATGCTGCTGAATT+AGG | 0.273273 | 1_3:+70087967 | None:intergenic |
| AATTGGGGAAGGAGCTATTC+AGG | 0.281026 | 1_3:-70088033 | Msa0137580:CDS |
| CCCACATGATATTCATTCAT+TGG | 0.354688 | 1_3:+70088225 | None:intergenic |
| TATGGAAGGGACATTGAATT+GGG | 0.356851 | 1_3:-70088049 | Msa0137580:CDS |
| TTAATTTGTTGGCAGGTTGC+AGG | 0.357498 | 1_3:-70089324 | Msa0137580:intron |
| TATCTTCCCTTCTAAAAGAA+AGG | 0.375927 | 1_3:-70090167 | Msa0137580:CDS |
| GATGGCTGTGGTGGTGGTGG+TGG | 0.384243 | 1_3:+70088315 | None:intergenic |
| TCTGTAAATCTCAGGCTCTT+GGG | 0.385516 | 1_3:-70089225 | Msa0137580:CDS |
| GGAATAAAACCTTGTCTAAC+CGG | 0.387416 | 1_3:+70088105 | None:intergenic |
| CCAGCTCCCTCTCACCTTGT+AGG | 0.387947 | 1_3:-70088828 | Msa0137580:CDS |
| TCCTTCCCACCACTACTTCC+TGG | 0.390896 | 1_3:+70088084 | None:intergenic |
| GGTTGAGATGGCTGTGGTGG+TGG | 0.391710 | 1_3:+70088309 | None:intergenic |
| TGATCTCCCATGTTATTTGC+TGG | 0.392930 | 1_3:+70088396 | None:intergenic |
| TGAGATGGCTGTGGTGGTGG+TGG | 0.393007 | 1_3:+70088312 | None:intergenic |
| ATATGGAAGGGACATTGAAT+TGG | 0.404608 | 1_3:-70088050 | Msa0137580:CDS |
| TTCTGTAAATCTCAGGCTCT+TGG | 0.411398 | 1_3:-70089226 | Msa0137580:CDS |
| GCAAATTGTTAAGATCTAAT+GGG | 0.416673 | 1_3:+70089949 | None:intergenic |
| GATGAACCTGAGAAATATCT+TGG | 0.416710 | 1_3:+70088354 | None:intergenic |
| CACAACATGAACTATGTTGC+AGG | 0.424362 | 1_3:-70088168 | Msa0137580:CDS |
| ATATAGCTTGCTGTTGGTAT+TGG | 0.426802 | 1_3:+70088420 | None:intergenic |
| TTCTTTCTGTCTCTCTCTGT+CGG | 0.437119 | 1_3:-70090121 | Msa0137580:CDS |
| CGGGTAGATCAGTGTCTTCA+AGG | 0.439966 | 1_3:+70089892 | None:intergenic |
| AGCTATTCAGGAGGAGGAGG+AGG | 0.443032 | 1_3:-70088021 | Msa0137580:CDS |
| AAATATCTTGGGAATCTCAT+AGG | 0.445139 | 1_3:+70088366 | None:intergenic |
| ATTCAGCAGCATTGATCAAT+CGG | 0.448010 | 1_3:-70087963 | Msa0137580:CDS |
| TTCGAGAGAGGAGGTGGCAG+AGG | 0.456623 | 1_3:-70090299 | Msa0137580:CDS |
| AGTTTGAGACTGCAATATAG+AGG | 0.457935 | 1_3:+70090225 | None:intergenic |
| ATCTTCCCTTCTAAAAGAAA+GGG | 0.459427 | 1_3:-70090166 | Msa0137580:CDS |
| GATGAATACTCTAGAGATCA+TGG | 0.470780 | 1_3:-70089924 | Msa0137580:CDS |
| TAGCTTGCTGTTGGTATTGG+TGG | 0.471374 | 1_3:+70088423 | None:intergenic |
| CTGTAAATCTCAGGCTCTTG+GGG | 0.476136 | 1_3:-70089224 | Msa0137580:CDS |
| AGTTCATGTTGTGATATTGC+TGG | 0.481239 | 1_3:+70088178 | None:intergenic |
| AGATTCCCAAGATATTTCTC+AGG | 0.488336 | 1_3:-70088360 | Msa0137580:CDS |
| AGGAGCTATTCAGGAGGAGG+AGG | 0.489907 | 1_3:-70088024 | Msa0137580:CDS |
| CCTCAAGTTCTGTAAATCTC+AGG | 0.490774 | 1_3:-70089233 | Msa0137580:CDS |
| CAGCTCCCTCTCACCTTGTA+GGG | 0.493565 | 1_3:-70088827 | Msa0137580:intron |
| GAAGGATCATCATCAAGATA+TGG | 0.494180 | 1_3:-70088067 | Msa0137580:CDS |
| CTTGCTGTTGGTATTGGTGG+TGG | 0.494554 | 1_3:+70088426 | None:intergenic |
| GAGAGATTCGAGAGAGGAGG+TGG | 0.495018 | 1_3:-70090305 | Msa0137580:CDS |
| ATGAACCTGAGAAATATCTT+GGG | 0.500848 | 1_3:+70088355 | None:intergenic |
| GTAGGTGAAGAGTACAGATA+TGG | 0.504476 | 1_3:+70088288 | None:intergenic |
| TGATCTCTAGAGTATTCATC+AGG | 0.517140 | 1_3:+70089927 | None:intergenic |
| AGGTGAGAGGGAGCTGGTTG+TGG | 0.522713 | 1_3:+70088834 | None:intergenic |
| CTGAGATTTACAGAACTTGA+GGG | 0.524443 | 1_3:+70089234 | None:intergenic |
| TGTTGTGATATTGCTGGTGG+TGG | 0.527644 | 1_3:+70088184 | None:intergenic |
| TTGATCAATCGGTTTCAAGA+TGG | 0.529982 | 1_3:-70087952 | Msa0137580:CDS |
| GTGCAAGGTTATGATCGTTA+CGG | 0.551633 | 1_3:+70088856 | None:intergenic |
| ATGAACTATGTTGCAGGTGC+AGG | 0.551767 | 1_3:-70088162 | Msa0137580:CDS |
| AAATGTGTAGGGAAAGACAC+TGG | 0.553627 | 1_3:+70088261 | None:intergenic |
| CTATATTCCAGCAAATAACA+TGG | 0.555865 | 1_3:-70088403 | Msa0137580:CDS |
| AGAGAGAGATTCGAGAGAGG+AGG | 0.556113 | 1_3:-70090308 | Msa0137580:CDS |
| AGAAGGGAAGATAAAACTAG+AGG | 0.558231 | 1_3:+70090177 | None:intergenic |
| GCTGGAATATAGCTTGCTGT+TGG | 0.559096 | 1_3:+70088414 | None:intergenic |
| TCCAATGAATGAATATCATG+TGG | 0.567802 | 1_3:-70088226 | Msa0137580:CDS |
| TTTATTCCAGGAAGTAGTGG+TGG | 0.567911 | 1_3:-70088090 | Msa0137580:CDS |
| CATTGGATACATACCCTACA+AGG | 0.569471 | 1_3:+70088814 | None:intergenic |
| GAAAGAGAGAGATTCGAGAG+AGG | 0.570941 | 1_3:-70090311 | Msa0137580:CDS |
| TCCAGGAAGTAGTGGTGGGA+AGG | 0.571603 | 1_3:-70088085 | Msa0137580:CDS |
| ATGGAAGGGACATTGAATTG+GGG | 0.575489 | 1_3:-70088048 | Msa0137580:CDS |
| AGGATGGAAAAGATGAGTGT+GGG | 0.577946 | 1_3:-70089282 | Msa0137580:CDS |
| TATGTTGCAGGTGCAGGTGG+TGG | 0.578820 | 1_3:-70088156 | Msa0137580:CDS |
| GATCATCATCAAGATATGGA+AGG | 0.580590 | 1_3:-70088063 | Msa0137580:CDS |
| CCTGAGATTTACAGAACTTG+AGG | 0.580726 | 1_3:+70089233 | None:intergenic |
| TATTCATTCATTGGATGCTG+AGG | 0.581889 | 1_3:+70088234 | None:intergenic |
| AACTATGTTGCAGGTGCAGG+TGG | 0.582825 | 1_3:-70088159 | Msa0137580:CDS |
| AAGGATGGAAAAGATGAGTG+TGG | 0.583920 | 1_3:-70089283 | Msa0137580:CDS |
| CCTACAAGGTGAGAGGGAGC+TGG | 0.588325 | 1_3:+70088828 | None:intergenic |
| TTACACTTGCATAGGTGCAC+CGG | 0.591451 | 1_3:-70088124 | Msa0137580:CDS |
| GAGTCGAGTTACACTTGCAT+AGG | 0.593277 | 1_3:-70088132 | Msa0137580:CDS |
| AGATCTAATGGGTTTCCTTG+CGG | 0.593490 | 1_3:+70089960 | None:intergenic |
| GGGAAAGACACTGGGCGTGT+AGG | 0.600436 | 1_3:+70088270 | None:intergenic |
| ATCATCATCAAGATATGGAA+GGG | 0.601576 | 1_3:-70088062 | Msa0137580:CDS |
| GAGTACAGATATGGTTGAGA+TGG | 0.603611 | 1_3:+70088297 | None:intergenic |
| GGAAGGAGCTATTCAGGAGG+AGG | 0.605635 | 1_3:-70088027 | Msa0137580:CDS |
| GCTGAGGAATCAAATGTGTA+GGG | 0.605957 | 1_3:+70088250 | None:intergenic |
| AGGGAGCTGGTTGTGGTGCA+AGG | 0.607305 | 1_3:+70088841 | None:intergenic |
| TATAGAGGCTAGTTGAGTGA+TGG | 0.609547 | 1_3:+70090240 | None:intergenic |
| TGGAAAAGATGAGTGTGGGA+AGG | 0.610222 | 1_3:-70089278 | Msa0137580:CDS |
| TATGGTTGAGATGGCTGTGG+TGG | 0.618669 | 1_3:+70088306 | None:intergenic |
| ATAGGTGCACCGGTTAGACA+AGG | 0.620734 | 1_3:-70088114 | Msa0137580:CDS |
| TTATTCCAGGAAGTAGTGGT+GGG | 0.630975 | 1_3:-70088089 | Msa0137580:CDS |
| CTTGAAGACACTGATCTACC+CGG | 0.633510 | 1_3:-70089891 | Msa0137580:intron |
| TATATTCCAGCAAATAACAT+GGG | 0.637814 | 1_3:-70088402 | Msa0137580:CDS |
| AATGTGTAGGGAAAGACACT+GGG | 0.638777 | 1_3:+70088262 | None:intergenic |
| TGCTGAGGAATCAAATGTGT+AGG | 0.639346 | 1_3:+70088249 | None:intergenic |
| GGAAGACTAGCTGACGTGCA+TGG | 0.639350 | 1_3:+70088877 | None:intergenic |
| TACATACCCTACAAGGTGAG+AGG | 0.640151 | 1_3:+70088821 | None:intergenic |
| ACATACCCTACAAGGTGAGA+GGG | 0.643709 | 1_3:+70088822 | None:intergenic |
| TCATGTTGTGATATTGCTGG+TGG | 0.643930 | 1_3:+70088181 | None:intergenic |
| AAGGGACATTGAATTGGGGA+AGG | 0.649883 | 1_3:-70088044 | Msa0137580:CDS |
| CCAATGAATGAATATCATGT+GGG | 0.659875 | 1_3:-70088225 | Msa0137580:CDS |
| AGATATGGTTGAGATGGCTG+TGG | 0.660186 | 1_3:+70088303 | None:intergenic |
| AGAATAAAACAACAAATGTG+GGG | 0.662187 | 1_3:-70092262 | None:intergenic |
| TGTAAATCTCAGGCTCTTGG+GGG | 0.671796 | 1_3:-70089223 | Msa0137580:CDS |
| TGGGGAAGGAGCTATTCAGG+AGG | 0.735271 | 1_3:-70088030 | Msa0137580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTATATTTTATTTT+TGG | - | chr1_3:70090592-70090611 | Msa0137580:intron | 0.0% |
| !!! | ATATTTTCTAAAGAATAAAA+AGG | + | chr1_3:70088285-70088304 | None:intergenic | 10.0% |
| !!! | AAAATATTTTCTTTAAATTG+AGG | - | chr1_3:70088298-70088317 | Msa0137580:CDS | 10.0% |
| !!! | AATAAAGTATTAAATGATTA+AGG | + | chr1_3:70089484-70089503 | None:intergenic | 10.0% |
| !!! | AAAGTTAAATAAATTTTTAC+CGG | + | chr1_3:70090323-70090342 | None:intergenic | 10.0% |
| !!! | TAAATAAAGATTTGATTTAA+AGG | + | chr1_3:70091053-70091072 | None:intergenic | 10.0% |
| !!! | ATCAACTTTTTCTTATAAAT+AGG | + | chr1_3:70088890-70088909 | None:intergenic | 15.0% |
| !! | GTTAAATGTTTCTTATTAAT+AGG | - | chr1_3:70088989-70089008 | Msa0137580:intron | 15.0% |
| !!! | AAGTTAAATAAATTTTTACC+GGG | + | chr1_3:70090322-70090341 | None:intergenic | 15.0% |
| !! | ACAATTTAATAAGAAAGAAA+GGG | + | chr1_3:70090625-70090644 | None:intergenic | 15.0% |
| !! | AACAATTTAATAAGAAAGAA+AGG | + | chr1_3:70090626-70090645 | None:intergenic | 15.0% |
| !! | TAGAGGAAAAATAAATAAAA+AGG | - | chr1_3:70090722-70090741 | Msa0137580:intron | 15.0% |
| !! | AGAGGAAAAATAAATAAAAA+GGG | - | chr1_3:70090723-70090742 | Msa0137580:intron | 15.0% |
| !!! | TATAATTTGATGATGATATA+TGG | - | chr1_3:70090778-70090797 | Msa0137580:intron | 15.0% |
| !!! | ATAATTTGATGATGATATAT+GGG | - | chr1_3:70090779-70090798 | Msa0137580:intron | 15.0% |
| !!! | TCATTATTTTATTTTTGGTT+GGG | + | chr1_3:70091110-70091129 | None:intergenic | 15.0% |
| !!! | ACTAGTCATTATTTTATTTT+TGG | + | chr1_3:70091115-70091134 | None:intergenic | 15.0% |
| !! | CTAATTTATTTGTATGATAA+AGG | + | chr1_3:70091464-70091483 | None:intergenic | 15.0% |
| !! | TCATACAAATAAATTAGAAT+CGG | - | chr1_3:70091467-70091486 | Msa0137580:intron | 15.0% |
| !!! | AAGTAAAAACATTTGATTTA+GGG | + | chr1_3:70091571-70091590 | None:intergenic | 15.0% |
| !!! | AAAGTAAAAACATTTGATTT+AGG | + | chr1_3:70091572-70091591 | None:intergenic | 15.0% |
| !! | AAAATCATAACAATAGTATT+AGG | - | chr1_3:70091625-70091644 | Msa0137580:intron | 15.0% |
| !!! | GAAATATATGAATTGATTTA+GGG | + | chr1_3:70091674-70091693 | None:intergenic | 15.0% |
| !!! | TGAAATATATGAATTGATTT+AGG | + | chr1_3:70091675-70091694 | None:intergenic | 15.0% |
| !! | ATGATGATATATGTATGTTT+GGG | + | chr1_3:70088239-70088258 | None:intergenic | 20.0% |
| !!! | CAATATGAAATTGTTTCTTT+TGG | + | chr1_3:70088527-70088546 | None:intergenic | 20.0% |
| !!! | ATGATTAATCTCTATTTTGA+CGG | - | chr1_3:70089150-70089169 | Msa0137580:intron | 20.0% |
| !! | TAACATAAACTTACCATTTA+AGG | - | chr1_3:70089301-70089320 | Msa0137580:CDS | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | + | chr1_3:70089388-70089407 | None:intergenic | 20.0% |
| !! | TAAATATATAGGGGTAATAT+AGG | - | chr1_3:70089526-70089545 | Msa0137580:intron | 20.0% |
| !!! | GTTCAAAGTATTATTAAATG+TGG | + | chr1_3:70089557-70089576 | None:intergenic | 20.0% |
| !! | AAATGATCATAGAAAGTAAT+GGG | + | chr1_3:70089659-70089678 | None:intergenic | 20.0% |
| !! | AAGATAAATATGAATGAGAA+AGG | + | chr1_3:70090131-70090150 | None:intergenic | 20.0% |
| !! | GTGATTATGGAATATAATAT+AGG | + | chr1_3:70090446-70090465 | None:intergenic | 20.0% |
| !! | AAAGTATAATAAGTCTTTCA+TGG | + | chr1_3:70090474-70090493 | None:intergenic | 20.0% |
| !! | CTTCAAATATATTGTCATAA+TGG | - | chr1_3:70090690-70090709 | Msa0137580:intron | 20.0% |
| !!! | ATATATTGTCATAATGGAAA+AGG | - | chr1_3:70090696-70090715 | Msa0137580:intron | 20.0% |
| !!! | GTCATTATTTTATTTTTGGT+TGG | + | chr1_3:70091111-70091130 | None:intergenic | 20.0% |
| !! | GTATTAATTAAAGGAAAAAG+TGG | + | chr1_3:70091408-70091427 | None:intergenic | 20.0% |
| !! | ATATGTGTAGATGAAATTAA+AGG | + | chr1_3:70091441-70091460 | None:intergenic | 20.0% |
| !! | GCTTGAAAATTAAAAGTAAT+TGG | + | chr1_3:70091605-70091624 | None:intergenic | 20.0% |
| !! | AAAGAAAATGGAACTATAAA+TGG | + | chr1_3:70091734-70091753 | None:intergenic | 20.0% |
| ! | GCATTTATACTAAGAAAGAA+AGG | + | chr1_3:70088178-70088197 | None:intergenic | 25.0% |
| ! | TGATGATATATGTATGTTTG+GGG | + | chr1_3:70088238-70088257 | None:intergenic | 25.0% |
| ! | CATGATGATATATGTATGTT+TGG | + | chr1_3:70088240-70088259 | None:intergenic | 25.0% |
| ! | TTAAGGAGAATGTTAACATA+AGG | + | chr1_3:70088630-70088649 | None:intergenic | 25.0% |
| ! | TTCAGATACTAATATATCTC+CGG | + | chr1_3:70088817-70088836 | None:intergenic | 25.0% |
| ! | TCTGAATATCATAATTACGA+CGG | - | chr1_3:70088831-70088850 | Msa0137580:CDS | 25.0% |
| ! | AAAGTAAATAATACTCTCTC+CGG | - | chr1_3:70088863-70088882 | Msa0137580:CDS | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | + | chr1_3:70088885-70088904 | None:intergenic | 25.0% |
| ! | CATTGTATAAATGATGTAGT+TGG | + | chr1_3:70088959-70088978 | None:intergenic | 25.0% |
| ! | ATGTTTCTTATTAATAGGAC+CGG | - | chr1_3:70088994-70089013 | Msa0137580:intron | 25.0% |
| ! | TAAAAAACAAATACTCCTTC+CGG | + | chr1_3:70089016-70089035 | None:intergenic | 25.0% |
| ! | TAGGGAGATTCAAATTTAAA+GGG | + | chr1_3:70089124-70089143 | None:intergenic | 25.0% |
| ! | GAGATTAATCATTCAATCTA+GGG | + | chr1_3:70089142-70089161 | None:intergenic | 25.0% |
| ! | AGAGATTAATCATTCAATCT+AGG | + | chr1_3:70089143-70089162 | None:intergenic | 25.0% |
| !!! | TGATTAATCTCTATTTTGAC+GGG | - | chr1_3:70089151-70089170 | Msa0137580:intron | 25.0% |
| !!! | TGGAGTTTTTGACTTTTTTA+AGG | + | chr1_3:70089265-70089284 | None:intergenic | 25.0% |
| !!! | GTTATCAATGCTTTGAAAAT+TGG | + | chr1_3:70089285-70089304 | None:intergenic | 25.0% |
| !!! | AGTAAAAGTATTTGTTGTCT+TGG | + | chr1_3:70089424-70089443 | None:intergenic | 25.0% |
| ! | TCTCTCTGCAATAAATATAT+AGG | - | chr1_3:70089515-70089534 | Msa0137580:intron | 25.0% |
| ! | CTCTCTGCAATAAATATATA+GGG | - | chr1_3:70089516-70089535 | Msa0137580:intron | 25.0% |
| ! | TCTCTGCAATAAATATATAG+GGG | - | chr1_3:70089517-70089536 | Msa0137580:intron | 25.0% |
| ! | TGCAAAAGTGACAATTATAA+AGG | - | chr1_3:70089613-70089632 | Msa0137580:intron | 25.0% |
| ! | AAGTGACAATTATAAAGGAA+CGG | - | chr1_3:70089618-70089637 | Msa0137580:intron | 25.0% |
| ! | CAAATGATCATAGAAAGTAA+TGG | + | chr1_3:70089660-70089679 | None:intergenic | 25.0% |
| ! | CATTACTTTCTATGATCATT+TGG | - | chr1_3:70089658-70089677 | Msa0137580:intron | 25.0% |
| ! | CACAAAATTGAATGAACAAT+AGG | + | chr1_3:70089827-70089846 | None:intergenic | 25.0% |
| !! | TATCTATTTGTTCCATTTTC+AGG | - | chr1_3:70090206-70090225 | Msa0137580:CDS | 25.0% |
| ! | GCAAATTGTTAAGATCTAAT+GGG | + | chr1_3:70090246-70090265 | None:intergenic | 25.0% |
| ! | ATGGAAAAAGATAAAAGAGA+AGG | + | chr1_3:70090651-70090670 | None:intergenic | 25.0% |
| ! | ATGATGATATATGGGAAATT+GGG | - | chr1_3:70090787-70090806 | Msa0137580:intron | 25.0% |
| !! | AAATTGGGAATGTTGATTAA+GGG | - | chr1_3:70090802-70090821 | Msa0137580:intron | 25.0% |
| !!! | GGATATTGTTGTTAATTTGT+TGG | - | chr1_3:70090857-70090876 | Msa0137580:intron | 25.0% |
| !! | GAAGTACTAAAATTCTTTCT+TGG | - | chr1_3:70091191-70091210 | Msa0137580:intron | 25.0% |
| !!! | TTTCTTGGTTTTGATTTGAA+AGG | - | chr1_3:70091206-70091225 | Msa0137580:intron | 25.0% |
| ! | TGATGTGTATATATTTGTGT+TGG | - | chr1_3:70091254-70091273 | Msa0137580:intron | 25.0% |
| ! | GATGTGTATATATTTGTGTT+GGG | - | chr1_3:70091255-70091274 | Msa0137580:intron | 25.0% |
| ! | TATTTGTGTTGGGTTTAATT+TGG | - | chr1_3:70091265-70091284 | Msa0137580:intron | 25.0% |
| !! | AGGAGCAAAGTATTAATTAA+AGG | + | chr1_3:70091417-70091436 | None:intergenic | 25.0% |
| ! | GGCATCATGATATAAATTAA+TGG | - | chr1_3:70091646-70091665 | Msa0137580:intron | 25.0% |
| ! | TATTTCATGTATGTCCATTA+TGG | - | chr1_3:70091688-70091707 | Msa0137580:intron | 25.0% |
| ! | ACAACATCTGAAAAAGAAAA+TGG | + | chr1_3:70091746-70091765 | None:intergenic | 25.0% |
| ! | TATATTCCAGCAAATAACAT+GGG | - | chr1_3:70091790-70091809 | Msa0137580:intron | 25.0% |
| GCTATCAGTATCTATCATTA+GGG | + | chr1_3:70087991-70088010 | None:intergenic | 30.0% | |
| TGCTATCAGTATCTATCATT+AGG | + | chr1_3:70087992-70088011 | None:intergenic | 30.0% | |
| TGCTACTATCTTTCATTCTT+AGG | - | chr1_3:70088195-70088214 | Msa0137580:CDS | 30.0% | |
| GCTACTATCTTTCATTCTTA+GGG | - | chr1_3:70088196-70088215 | Msa0137580:CDS | 30.0% | |
| !!! | TAGACATTTTTTTCCCTTCT+AGG | - | chr1_3:70088381-70088400 | Msa0137580:CDS | 30.0% |
| !!! | AGACATTTTTTTCCCTTCTA+GGG | - | chr1_3:70088382-70088401 | Msa0137580:CDS | 30.0% |
| TTCAAGAATTAAACCCATAG+TGG | - | chr1_3:70088773-70088792 | Msa0137580:intron | 30.0% | |
| CTGAATATCATAATTACGAC+GGG | - | chr1_3:70088832-70088851 | Msa0137580:CDS | 30.0% | |
| ACTTGACAGATTTAAGTATG+TGG | - | chr1_3:70089053-70089072 | Msa0137580:intron | 30.0% | |
| CTAGGGAGATTCAAATTTAA+AGG | + | chr1_3:70089125-70089144 | None:intergenic | 30.0% | |
| !!! | GATTAATCTCTATTTTGACG+GGG | - | chr1_3:70089152-70089171 | Msa0137580:intron | 30.0% |
| !! | TATCCTAAAAGCACTCTTTA+AGG | - | chr1_3:70089218-70089237 | Msa0137580:CDS | 30.0% |
| !!! | AATCCTTAAAGAGTGCTTTT+AGG | + | chr1_3:70089224-70089243 | None:intergenic | 30.0% |
| CATTGTTTAGTGACCTTAAA+TGG | + | chr1_3:70089317-70089336 | None:intergenic | 30.0% | |
| GACAATTAAAAAGGAACAGA+GGG | + | chr1_3:70089379-70089398 | None:intergenic | 30.0% | |
| TGACAATTAAAAAGGAACAG+AGG | + | chr1_3:70089380-70089399 | None:intergenic | 30.0% | |
| ! | TGAAAGTCTCACAAATTTTG+TGG | - | chr1_3:70089989-70090008 | Msa0137580:intron | 30.0% |
| ! | TATCTTCCCTTCTAAAAGAA+AGG | - | chr1_3:70090025-70090044 | Msa0137580:intron | 30.0% |
| ! | ATCTTCCCTTCTAAAAGAAA+GGG | - | chr1_3:70090026-70090045 | Msa0137580:intron | 30.0% |
| !! | AAACACCCTTTCTTTTAGAA+GGG | + | chr1_3:70090034-70090053 | None:intergenic | 30.0% |
| ! | TAAACACCCTTTCTTTTAGA+AGG | + | chr1_3:70090035-70090054 | None:intergenic | 30.0% |
| GGAACAAATAGATATAGTGA+AGG | + | chr1_3:70090200-70090219 | None:intergenic | 30.0% | |
| GGCAAATTGTTAAGATCTAA+TGG | + | chr1_3:70090247-70090266 | None:intergenic | 30.0% | |
| TTTCATGGTATGTGTGATTA+TGG | + | chr1_3:70090459-70090478 | None:intergenic | 30.0% | |
| AGACTTATTATACTTTCCAC+AGG | - | chr1_3:70090478-70090497 | Msa0137580:intron | 30.0% | |
| ATGGTCAAAAGAATATACCA+CGG | + | chr1_3:70090538-70090557 | None:intergenic | 30.0% | |
| ! | AATTATTGAGCACTGTTTCA+TGG | + | chr1_3:70090557-70090576 | None:intergenic | 30.0% |
| TTTAAAGAAGCTAGCAAGTA+TGG | + | chr1_3:70090670-70090689 | None:intergenic | 30.0% | |
| GATGATGATATATGGGAAAT+TGG | - | chr1_3:70090786-70090805 | Msa0137580:intron | 30.0% | |
| ! | GAAATTGGGAATGTTGATTA+AGG | - | chr1_3:70090801-70090820 | Msa0137580:intron | 30.0% |
| !! | ATTGTTGTTAATTTGTTGGC+AGG | - | chr1_3:70090861-70090880 | Msa0137580:intron | 30.0% |
| GTGTAGATGAAATTAAAGGA+AGG | + | chr1_3:70091437-70091456 | None:intergenic | 30.0% | |
| TACAAAACAATGAGCCATAA+TGG | + | chr1_3:70091705-70091724 | None:intergenic | 30.0% | |
| CTATATTCCAGCAAATAACA+TGG | - | chr1_3:70091789-70091808 | Msa0137580:intron | 30.0% | |
| AAATATCTTGGGAATCTCAT+AGG | + | chr1_3:70091829-70091848 | None:intergenic | 30.0% | |
| ATGAACCTGAGAAATATCTT+GGG | + | chr1_3:70091840-70091859 | None:intergenic | 30.0% | |
| TCCAATGAATGAATATCATG+TGG | - | chr1_3:70091966-70091985 | Msa0137580:intron | 30.0% | |
| CCAATGAATGAATATCATGT+GGG | - | chr1_3:70091967-70091986 | Msa0137580:intron | 30.0% | |
| ATCATCATCAAGATATGGAA+GGG | - | chr1_3:70092130-70092149 | Msa0137580:intron | 30.0% | |
| ! | GGTTTTTGCAATCTAACTTG+GGG | + | chr1_3:70087970-70087989 | None:intergenic | 35.0% |
| ! | GGGTTTTTGCAATCTAACTT+GGG | + | chr1_3:70087971-70087990 | None:intergenic | 35.0% |
| ! | AGGGTTTTTGCAATCTAACT+TGG | + | chr1_3:70087972-70087991 | None:intergenic | 35.0% |
| ! | CTTAGACTTGCTTCATAGAA+AGG | + | chr1_3:70088016-70088035 | None:intergenic | 35.0% |
| ! | GTAGAATTTTACACCCAGAA+AGG | - | chr1_3:70088044-70088063 | Msa0137580:CDS | 35.0% |
| TTTGAGAAACAGGTCATGTA+TGG | + | chr1_3:70088090-70088109 | None:intergenic | 35.0% | |
| AGAAAGGAAGACAAGACATA+GGG | + | chr1_3:70088162-70088181 | None:intergenic | 35.0% | |
| AAGAAAGGAAGACAAGACAT+AGG | + | chr1_3:70088163-70088182 | None:intergenic | 35.0% | |
| ! | ATGTATGTTTGGGGCATTAA+AGG | + | chr1_3:70088229-70088248 | None:intergenic | 35.0% |
| !!! | TAGTCGTTTTTTCCCTAGAA+GGG | + | chr1_3:70088397-70088416 | None:intergenic | 35.0% |
| !!! | ATAGTCGTTTTTTCCCTAGA+AGG | + | chr1_3:70088398-70088417 | None:intergenic | 35.0% |
| AAAACGACTATATCCAGAAG+TGG | - | chr1_3:70088407-70088426 | Msa0137580:CDS | 35.0% | |
| ! | TTTTAACATGTGCCCTAATG+AGG | + | chr1_3:70088501-70088520 | None:intergenic | 35.0% |
| ACTCAGACACATTAGCATTA+AGG | + | chr1_3:70088647-70088666 | None:intergenic | 35.0% | |
| TTCTTATTAATAGGACCGGA+AGG | - | chr1_3:70088998-70089017 | Msa0137580:intron | 35.0% | |
| ACACACATAGAAGAACACTT+AGG | - | chr1_3:70089089-70089108 | Msa0137580:intron | 35.0% | |
| TCATTAGCATTTCCCGAAAT+AGG | - | chr1_3:70089349-70089368 | Msa0137580:intron | 35.0% | |
| TTGAATGAACAATAGGACAG+TGG | + | chr1_3:70089820-70089839 | None:intergenic | 35.0% | |
| ! | AATTTTGTGTGTGAGTGTGT+GGG | - | chr1_3:70089838-70089857 | Msa0137580:intron | 35.0% |
| ! | AGTTTGAGACTGCAATATAG+AGG | + | chr1_3:70089970-70089989 | None:intergenic | 35.0% |
| AGAAGGGAAGATAAAACTAG+AGG | + | chr1_3:70090018-70090037 | None:intergenic | 35.0% | |
| ! | TGAGAAAGGTGTAGTATAGT+GGG | + | chr1_3:70090117-70090136 | None:intergenic | 35.0% |
| ! | ATGAGAAAGGTGTAGTATAG+TGG | + | chr1_3:70090118-70090137 | None:intergenic | 35.0% |
| !! | TGATCTCTAGAGTATTCATC+AGG | + | chr1_3:70090268-70090287 | None:intergenic | 35.0% |
| ! | GATGAATACTCTAGAGATCA+TGG | - | chr1_3:70090268-70090287 | Msa0137580:CDS | 35.0% |
| !! | GTGTTCAATTTTGTTTCCTG+TGG | + | chr1_3:70090497-70090516 | None:intergenic | 35.0% |
| TGGTCAAAAGAATATACCAC+GGG | + | chr1_3:70090537-70090556 | None:intergenic | 35.0% | |
| ! | CATAATGGAAAAGGAGTTAG+AGG | - | chr1_3:70090705-70090724 | Msa0137580:intron | 35.0% |
| ! | TGTTGATTAAGGGAAAGTAG+TGG | - | chr1_3:70090812-70090831 | Msa0137580:intron | 35.0% |
| GGTTGCAGGAAAAAGAAAAA+CGG | - | chr1_3:70090882-70090901 | Msa0137580:intron | 35.0% | |
| CTGAGATTTACAGAACTTGA+GGG | + | chr1_3:70090961-70090980 | None:intergenic | 35.0% | |
| ! | ATGAAAAGAATAGCTAGCCT+TGG | + | chr1_3:70091013-70091032 | None:intergenic | 35.0% |
| TAGAATCGGATAAGATGTTG+TGG | - | chr1_3:70091481-70091500 | Msa0137580:intron | 35.0% | |
| AGAATCGGATAAGATGTTGT+GGG | - | chr1_3:70091482-70091501 | Msa0137580:intron | 35.0% | |
| AACCCACCGTACTAAATTAA+TGG | - | chr1_3:70091543-70091562 | Msa0137580:intron | 35.0% | |
| CTCCATTAATTTAGTACGGT+GGG | + | chr1_3:70091548-70091567 | None:intergenic | 35.0% | |
| AGGGCTCCATTAATTTAGTA+CGG | + | chr1_3:70091552-70091571 | None:intergenic | 35.0% | |
| !! | ATATAGCTTGCTGTTGGTAT+TGG | + | chr1_3:70091775-70091794 | None:intergenic | 35.0% |
| AGATTCCCAAGATATTTCTC+AGG | - | chr1_3:70091832-70091851 | Msa0137580:intron | 35.0% | |
| GATGAACCTGAGAAATATCT+TGG | + | chr1_3:70091841-70091860 | None:intergenic | 35.0% | |
| TATTCATTCATTGGATGCTG+AGG | + | chr1_3:70091961-70091980 | None:intergenic | 35.0% | |
| CCCACATGATATTCATTCAT+TGG | + | chr1_3:70091970-70091989 | None:intergenic | 35.0% | |
| AGTTCATGTTGTGATATTGC+TGG | + | chr1_3:70092017-70092036 | None:intergenic | 35.0% | |
| GGAATAAAACCTTGTCTAAC+CGG | + | chr1_3:70092090-70092109 | None:intergenic | 35.0% | |
| !!! | GTTAGACAAGGTTTTATTCC+AGG | - | chr1_3:70092090-70092109 | Msa0137580:intron | 35.0% |
| GAAGGATCATCATCAAGATA+TGG | - | chr1_3:70092125-70092144 | Msa0137580:intron | 35.0% | |
| GATCATCATCAAGATATGGA+AGG | - | chr1_3:70092129-70092148 | Msa0137580:intron | 35.0% | |
| ATATGGAAGGGACATTGAAT+TGG | - | chr1_3:70092142-70092161 | Msa0137580:intron | 35.0% | |
| TATGGAAGGGACATTGAATT+GGG | - | chr1_3:70092143-70092162 | Msa0137580:intron | 35.0% | |
| TTGATCAATGCTGCTGAATT+AGG | + | chr1_3:70092228-70092247 | None:intergenic | 35.0% | |
| !! | ATTCAGCAGCATTGATCAAT+CGG | - | chr1_3:70092229-70092248 | Msa0137580:intron | 35.0% |
| ! | TTGATCAATCGGTTTCAAGA+TGG | - | chr1_3:70092240-70092259 | Msa0137580:intron | 35.0% |
| TGGGTGTAAAATTCTACCCA+GGG | + | chr1_3:70088041-70088060 | None:intergenic | 40.0% | |
| ! | GAATTTTACACCCAGAAAGG+AGG | - | chr1_3:70088047-70088066 | Msa0137580:CDS | 40.0% |
| TGGTTATTGTGCTAACAGAG+GGG | + | chr1_3:70088120-70088139 | None:intergenic | 40.0% | |
| GTGGTTATTGTGCTAACAGA+GGG | + | chr1_3:70088121-70088140 | None:intergenic | 40.0% | |
| ! | ATGTTTGGGGCATTAAAGGT+GGG | + | chr1_3:70088225-70088244 | None:intergenic | 40.0% |
| ! | TATGTTTGGGGCATTAAAGG+TGG | + | chr1_3:70088226-70088245 | None:intergenic | 40.0% |
| TCACTAACATGTGCCTCATT+AGG | - | chr1_3:70088485-70088504 | Msa0137580:intron | 40.0% | |
| CACTAACATGTGCCTCATTA+GGG | - | chr1_3:70088486-70088505 | Msa0137580:intron | 40.0% | |
| TTAAACCCATAGTGGCACAA+AGG | - | chr1_3:70088781-70088800 | Msa0137580:intron | 40.0% | |
| TAAACCCATAGTGGCACAAA+GGG | - | chr1_3:70088782-70088801 | Msa0137580:intron | 40.0% | |
| !! | AACAGAGGGAGTACCTATTT+CGG | + | chr1_3:70089365-70089384 | None:intergenic | 40.0% |
| ! | CAATTTTGTGTGTGAGTGTG+TGG | - | chr1_3:70089837-70089856 | Msa0137580:intron | 40.0% |
| ! | ATTTTGTGTGTGAGTGTGTG+GGG | - | chr1_3:70089839-70089858 | Msa0137580:intron | 40.0% |
| ! | TATAGAGGCTAGTTGAGTGA+TGG | + | chr1_3:70089955-70089974 | None:intergenic | 40.0% |
| TTCTTTCTGTCTCTCTCTGT+CGG | - | chr1_3:70090071-70090090 | Msa0137580:intron | 40.0% | |
| ! | AGAAAGGTGTAGTATAGTGG+GGG | + | chr1_3:70090115-70090134 | None:intergenic | 40.0% |
| ! | GAGAAAGGTGTAGTATAGTG+GGG | + | chr1_3:70090116-70090135 | None:intergenic | 40.0% |
| !! | AGATCTAATGGGTTTCCTTG+CGG | + | chr1_3:70090235-70090254 | None:intergenic | 40.0% |
| GGTCAAAAGAATATACCACG+GGG | + | chr1_3:70090536-70090555 | None:intergenic | 40.0% | |
| CTCGTCGAAGTTGCTTAAAT+AGG | - | chr1_3:70090836-70090855 | Msa0137580:intron | 40.0% | |
| !! | TTAATTTGTTGGCAGGTTGC+AGG | - | chr1_3:70090868-70090887 | Msa0137580:intron | 40.0% |
| TGCAGGAAAAAGAAAAACGG+CGG | - | chr1_3:70090885-70090904 | Msa0137580:intron | 40.0% | |
| AAGGATGGAAAAGATGAGTG+TGG | - | chr1_3:70090909-70090928 | Msa0137580:intron | 40.0% | |
| AGGATGGAAAAGATGAGTGT+GGG | - | chr1_3:70090910-70090929 | Msa0137580:intron | 40.0% | |
| CCTGAGATTTACAGAACTTG+AGG | + | chr1_3:70090962-70090981 | None:intergenic | 40.0% | |
| CCTCAAGTTCTGTAAATCTC+AGG | - | chr1_3:70090959-70090978 | Msa0137580:intron | 40.0% | |
| TTCTGTAAATCTCAGGCTCT+TGG | - | chr1_3:70090966-70090985 | Msa0137580:intron | 40.0% | |
| TCTGTAAATCTCAGGCTCTT+GGG | - | chr1_3:70090967-70090986 | Msa0137580:intron | 40.0% | |
| !! | AAAAGAATAGCTAGCCTTGG+CGG | + | chr1_3:70091010-70091029 | None:intergenic | 40.0% |
| TGACATGTGACAACGTTTCA+TGG | + | chr1_3:70091152-70091171 | None:intergenic | 40.0% | |
| GAAAGGTCTTTCTCTTGTGT+TGG | - | chr1_3:70091223-70091242 | Msa0137580:intron | 40.0% | |
| !! | GGTTTAATTTGGTGCAGAGA+GGG | - | chr1_3:70091276-70091295 | Msa0137580:intron | 40.0% |
| GTGCAAGGTTATGATCGTTA+CGG | + | chr1_3:70091339-70091358 | None:intergenic | 40.0% | |
| CATTGGATACATACCCTACA+AGG | + | chr1_3:70091381-70091400 | None:intergenic | 40.0% | |
| AAGGAAAAAGTGGTGTGCAT+TGG | + | chr1_3:70091398-70091417 | None:intergenic | 40.0% | |
| GCTCCATTAATTTAGTACGG+TGG | + | chr1_3:70091549-70091568 | None:intergenic | 40.0% | |
| ! | TGATCTCCCATGTTATTTGC+TGG | + | chr1_3:70091799-70091818 | None:intergenic | 40.0% |
| GAGTACAGATATGGTTGAGA+TGG | + | chr1_3:70091898-70091917 | None:intergenic | 40.0% | |
| ! | GTAGGTGAAGAGTACAGATA+TGG | + | chr1_3:70091907-70091926 | None:intergenic | 40.0% |
| AATGTGTAGGGAAAGACACT+GGG | + | chr1_3:70091933-70091952 | None:intergenic | 40.0% | |
| AAATGTGTAGGGAAAGACAC+TGG | + | chr1_3:70091934-70091953 | None:intergenic | 40.0% | |
| GCTGAGGAATCAAATGTGTA+GGG | + | chr1_3:70091945-70091964 | None:intergenic | 40.0% | |
| TGCTGAGGAATCAAATGTGT+AGG | + | chr1_3:70091946-70091965 | None:intergenic | 40.0% | |
| TCATGTTGTGATATTGCTGG+TGG | + | chr1_3:70092014-70092033 | None:intergenic | 40.0% | |
| CACAACATGAACTATGTTGC+AGG | - | chr1_3:70092024-70092043 | Msa0137580:intron | 40.0% | |
| !!! | GGTTTTATTCCAGGAAGTAG+TGG | - | chr1_3:70092099-70092118 | Msa0137580:intron | 40.0% |
| TTTATTCCAGGAAGTAGTGG+TGG | - | chr1_3:70092102-70092121 | Msa0137580:intron | 40.0% | |
| TTATTCCAGGAAGTAGTGGT+GGG | - | chr1_3:70092103-70092122 | Msa0137580:intron | 40.0% | |
| ATGGAAGGGACATTGAATTG+GGG | - | chr1_3:70092144-70092163 | Msa0137580:intron | 40.0% | |
| TTTGCAATCTAACTTGGGGC+CGG | + | chr1_3:70087966-70087985 | None:intergenic | 45.0% | |
| GGGTGTAAAATTCTACCCAG+GGG | + | chr1_3:70088040-70088059 | None:intergenic | 45.0% | |
| CTGGGTGTAAAATTCTACCC+AGG | + | chr1_3:70088042-70088061 | None:intergenic | 45.0% | |
| TAGCTCAATGCCTCCTTTCT+GGG | + | chr1_3:70088060-70088079 | None:intergenic | 45.0% | |
| ATAGCTCAATGCCTCCTTTC+TGG | + | chr1_3:70088061-70088080 | None:intergenic | 45.0% | |
| !! | AAGGAGGCATTGAGCTATTG+TGG | - | chr1_3:70088063-70088082 | Msa0137580:CDS | 45.0% |
| GTTATTGTGCTAACAGAGGG+GGG | + | chr1_3:70088118-70088137 | None:intergenic | 45.0% | |
| GGTTATTGTGCTAACAGAGG+GGG | + | chr1_3:70088119-70088138 | None:intergenic | 45.0% | |
| CGTGGTTATTGTGCTAACAG+AGG | + | chr1_3:70088122-70088141 | None:intergenic | 45.0% | |
| GTACGTAGAGACATTTAGCG+TGG | + | chr1_3:70088140-70088159 | None:intergenic | 45.0% | |
| ATCCAGAAGTGGTACAAGCT+AGG | - | chr1_3:70088418-70088437 | Msa0137580:CDS | 45.0% | |
| ! | ATCCTAGCTTGTACCACTTC+TGG | + | chr1_3:70088423-70088442 | None:intergenic | 45.0% |
| AAACCCATAGTGGCACAAAG+GGG | - | chr1_3:70088783-70088802 | Msa0137580:intron | 45.0% | |
| ! | AAACCCCTTTGTGCCACTAT+GGG | + | chr1_3:70088789-70088808 | None:intergenic | 45.0% |
| ! | TAAACCCCTTTGTGCCACTA+TGG | + | chr1_3:70088790-70088809 | None:intergenic | 45.0% |
| GCACAAAGGGGTTTAAACTC+CGG | - | chr1_3:70088795-70088814 | Msa0137580:intron | 45.0% | |
| GGTCACTAAACAATGCTACG+AGG | - | chr1_3:70089322-70089341 | Msa0137580:intron | 45.0% | |
| !! | ACAGAGGGAGTACCTATTTC+GGG | + | chr1_3:70089364-70089383 | None:intergenic | 45.0% |
| CTAGCTAACTTCGTCTGGTT+TGG | + | chr1_3:70089699-70089718 | None:intergenic | 45.0% | |
| ! | TTTTGTGTGTGAGTGTGTGG+GGG | - | chr1_3:70089840-70089859 | Msa0137580:intron | 45.0% |
| GAAAGAGAGAGATTCGAGAG+AGG | - | chr1_3:70089881-70089900 | Msa0137580:intron | 45.0% | |
| CTCTGTCGGTACAATCATGT+AGG | - | chr1_3:70090085-70090104 | Msa0137580:intron | 45.0% | |
| CTTGAAGACACTGATCTACC+CGG | - | chr1_3:70090301-70090320 | Msa0137580:CDS | 45.0% | |
| ! | GTCATATTTTGTCATCCCCG+TGG | - | chr1_3:70090518-70090537 | Msa0137580:intron | 45.0% |
| GCAGGAAAAAGAAAAACGGC+GGG | - | chr1_3:70090886-70090905 | Msa0137580:intron | 45.0% | |
| GAAAAAGAAAAACGGCGGGA+AGG | - | chr1_3:70090890-70090909 | Msa0137580:intron | 45.0% | |
| TGGAAAAGATGAGTGTGGGA+AGG | - | chr1_3:70090914-70090933 | Msa0137580:intron | 45.0% | |
| CTGTAAATCTCAGGCTCTTG+GGG | - | chr1_3:70090968-70090987 | Msa0137580:intron | 45.0% | |
| TGTAAATCTCAGGCTCTTGG+GGG | - | chr1_3:70090969-70090988 | Msa0137580:intron | 45.0% | |
| !! | GGGTTTAATTTGGTGCAGAG+AGG | - | chr1_3:70091275-70091294 | Msa0137580:intron | 45.0% |
| ACATACCCTACAAGGTGAGA+GGG | + | chr1_3:70091373-70091392 | None:intergenic | 45.0% | |
| TACATACCCTACAAGGTGAG+AGG | + | chr1_3:70091374-70091393 | None:intergenic | 45.0% | |
| ! | TGAGATGAGTGGGAGTGTAT+GGG | + | chr1_3:70091514-70091533 | None:intergenic | 45.0% |
| TAAACCGCTGTGAGATGAGT+GGG | + | chr1_3:70091524-70091543 | None:intergenic | 45.0% | |
| TTAAACCGCTGTGAGATGAG+TGG | + | chr1_3:70091525-70091544 | None:intergenic | 45.0% | |
| !! | TAGCTTGCTGTTGGTATTGG+TGG | + | chr1_3:70091772-70091791 | None:intergenic | 45.0% |
| !! | GCTGGAATATAGCTTGCTGT+TGG | + | chr1_3:70091781-70091800 | None:intergenic | 45.0% |
| AGATATGGTTGAGATGGCTG+TGG | + | chr1_3:70091892-70091911 | None:intergenic | 45.0% | |
| TGTTGTGATATTGCTGGTGG+TGG | + | chr1_3:70092011-70092030 | None:intergenic | 45.0% | |
| ATGAACTATGTTGCAGGTGC+AGG | - | chr1_3:70092030-70092049 | Msa0137580:intron | 45.0% | |
| GAGTCGAGTTACACTTGCAT+AGG | - | chr1_3:70092060-70092079 | Msa0137580:intron | 45.0% | |
| TTACACTTGCATAGGTGCAC+CGG | - | chr1_3:70092068-70092087 | Msa0137580:intron | 45.0% | |
| AAGGGACATTGAATTGGGGA+AGG | - | chr1_3:70092148-70092167 | Msa0137580:intron | 45.0% | |
| AATTGGGGAAGGAGCTATTC+AGG | - | chr1_3:70092159-70092178 | Msa0137580:intron | 45.0% | |
| !! | TATTATTAATAATTAACATA+AGG | - | chr1_3:70088459-70088478 | Msa0137580:intron | 5.0% |
| !! | ATTATTAATAATTAACATAA+GGG | - | chr1_3:70088460-70088479 | Msa0137580:intron | 5.0% |
| TGAAGCAAGTCTAAGTCCCC+TGG | - | chr1_3:70088021-70088040 | Msa0137580:CDS | 50.0% | |
| GAAGCAAGTCTAAGTCCCCT+GGG | - | chr1_3:70088022-70088041 | Msa0137580:CDS | 50.0% | |
| GGGGGACATGTTTGAGAAAC+AGG | + | chr1_3:70088100-70088119 | None:intergenic | 50.0% | |
| CCTAGCTAGCTAACTTCGTC+TGG | + | chr1_3:70089704-70089723 | None:intergenic | 50.0% | |
| CCAGACGAAGTTAGCTAGCT+AGG | - | chr1_3:70089701-70089720 | Msa0137580:intron | 50.0% | |
| AGAGAGAGATTCGAGAGAGG+AGG | - | chr1_3:70089884-70089903 | Msa0137580:intron | 50.0% | |
| !! | TCCATTTTCAGGAGACCGCA+AGG | - | chr1_3:70090217-70090236 | Msa0137580:CDS | 50.0% |
| TCCTTGCGGTCTCCTGAAAA+TGG | + | chr1_3:70090221-70090240 | None:intergenic | 50.0% | |
| CGGGTAGATCAGTGTCTTCA+AGG | + | chr1_3:70090303-70090322 | None:intergenic | 50.0% | |
| AAGAAAAACGGCGGGAAGGA+TGG | - | chr1_3:70090894-70090913 | Msa0137580:intron | 50.0% | |
| ! | GTGAGATGAGTGGGAGTGTA+TGG | + | chr1_3:70091515-70091534 | None:intergenic | 50.0% |
| !! | CTTGCTGTTGGTATTGGTGG+TGG | + | chr1_3:70091769-70091788 | None:intergenic | 50.0% |
| TATGGTTGAGATGGCTGTGG+TGG | + | chr1_3:70091889-70091908 | None:intergenic | 50.0% | |
| AACTATGTTGCAGGTGCAGG+TGG | - | chr1_3:70092033-70092052 | Msa0137580:intron | 50.0% | |
| !! | ATAGGTGCACCGGTTAGACA+AGG | - | chr1_3:70092078-70092097 | Msa0137580:intron | 50.0% |
| GAGAGATTCGAGAGAGGAGG+TGG | - | chr1_3:70089887-70089906 | Msa0137580:intron | 55.0% | |
| !! | ATAGCTAGCCTTGGCGGTGA+CGG | + | chr1_3:70091004-70091023 | None:intergenic | 55.0% |
| ! | GGAAGACTAGCTGACGTGCA+TGG | + | chr1_3:70091318-70091337 | None:intergenic | 55.0% |
| CAGCTCCCTCTCACCTTGTA+GGG | - | chr1_3:70091365-70091384 | Msa0137580:intron | 55.0% | |
| CACTCCCACTCATCTCACAG+CGG | - | chr1_3:70091517-70091536 | Msa0137580:intron | 55.0% | |
| !! | TGGTGGTGGTGGTGGAATGT+GGG | + | chr1_3:70091869-70091888 | None:intergenic | 55.0% |
| TATGTTGCAGGTGCAGGTGG+TGG | - | chr1_3:70092036-70092055 | Msa0137580:intron | 55.0% | |
| ! | TCCAGGAAGTAGTGGTGGGA+AGG | - | chr1_3:70092107-70092126 | Msa0137580:intron | 55.0% |
| TCCTTCCCACCACTACTTCC+TGG | + | chr1_3:70092111-70092130 | None:intergenic | 55.0% | |
| TGGGGAAGGAGCTATTCAGG+AGG | - | chr1_3:70092162-70092181 | Msa0137580:intron | 55.0% | |
| GGAAGGAGCTATTCAGGAGG+AGG | - | chr1_3:70092165-70092184 | Msa0137580:intron | 55.0% | |
| AGGAGCTATTCAGGAGGAGG+AGG | - | chr1_3:70092168-70092187 | Msa0137580:intron | 55.0% | |
| AGCTATTCAGGAGGAGGAGG+AGG | - | chr1_3:70092171-70092190 | Msa0137580:intron | 55.0% | |
| TATTCAGGAGGAGGAGGAGG+AGG | - | chr1_3:70092174-70092193 | Msa0137580:intron | 55.0% | |
| TTCGAGAGAGGAGGTGGCAG+AGG | - | chr1_3:70089893-70089912 | Msa0137580:CDS | 60.0% | |
| CACATGAACCGTCACCGCCA+AGG | - | chr1_3:70090993-70091012 | Msa0137580:intron | 60.0% | |
| AGGGAGCTGGTTGTGGTGCA+AGG | + | chr1_3:70091354-70091373 | None:intergenic | 60.0% | |
| AGGTGAGAGGGAGCTGGTTG+TGG | + | chr1_3:70091361-70091380 | None:intergenic | 60.0% | |
| CCTACAAGGTGAGAGGGAGC+TGG | + | chr1_3:70091367-70091386 | None:intergenic | 60.0% | |
| CCAGCTCCCTCTCACCTTGT+AGG | - | chr1_3:70091364-70091383 | Msa0137580:intron | 60.0% | |
| !! | GTGGTGGTGGTGGTGGAATG+TGG | + | chr1_3:70091870-70091889 | None:intergenic | 60.0% |
| !! | TGAGATGGCTGTGGTGGTGG+TGG | + | chr1_3:70091883-70091902 | None:intergenic | 60.0% |
| GGTTGAGATGGCTGTGGTGG+TGG | + | chr1_3:70091886-70091905 | None:intergenic | 60.0% | |
| GGGAAAGACACTGGGCGTGT+AGG | + | chr1_3:70091925-70091944 | None:intergenic | 60.0% | |
| !! | GATGGCTGTGGTGGTGGTGG+TGG | + | chr1_3:70091880-70091899 | None:intergenic | 65.0% |
| !! | GGCTGTGGTGGTGGTGGTGG+TGG | + | chr1_3:70091877-70091896 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 70087945 | 70092269 | 70087945 | ID=Msa0137580;Name=Msa0137580 |
| chr1_3 | mRNA | 70087945 | 70092269 | 70087945 | ID=Msa0137580-mRNA-1;Parent=Msa0137580;Name=Msa0137580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.2|0|0.83|0.6|0.5|6|0|354 |
| chr1_3 | exon | 70092263 | 70092269 | 70092263 | ID=Msa0137580-mRNA-1:exon:24297;Parent=Msa0137580-mRNA-1 |
| chr1_3 | exon | 70090112 | 70090349 | 70090112 | ID=Msa0137580-mRNA-1:exon:24296;Parent=Msa0137580-mRNA-1 |
| chr1_3 | exon | 70089892 | 70089986 | 70089892 | ID=Msa0137580-mRNA-1:exon:24295;Parent=Msa0137580-mRNA-1 |
| chr1_3 | exon | 70089212 | 70089331 | 70089212 | ID=Msa0137580-mRNA-1:exon:24294;Parent=Msa0137580-mRNA-1 |
| chr1_3 | exon | 70088828 | 70088921 | 70088828 | ID=Msa0137580-mRNA-1:exon:24293;Parent=Msa0137580-mRNA-1 |
| chr1_3 | exon | 70087945 | 70088455 | 70087945 | ID=Msa0137580-mRNA-1:exon:24292;Parent=Msa0137580-mRNA-1 |
| chr1_3 | CDS | 70092263 | 70092269 | 70092263 | ID=Msa0137580-mRNA-1:cds;Parent=Msa0137580-mRNA-1 |
| chr1_3 | CDS | 70090112 | 70090349 | 70090112 | ID=Msa0137580-mRNA-1:cds;Parent=Msa0137580-mRNA-1 |
| chr1_3 | CDS | 70089892 | 70089986 | 70089892 | ID=Msa0137580-mRNA-1:cds;Parent=Msa0137580-mRNA-1 |
| chr1_3 | CDS | 70089212 | 70089331 | 70089212 | ID=Msa0137580-mRNA-1:cds;Parent=Msa0137580-mRNA-1 |
| chr1_3 | CDS | 70088828 | 70088921 | 70088828 | ID=Msa0137580-mRNA-1:cds;Parent=Msa0137580-mRNA-1 |
| chr1_3 | CDS | 70087945 | 70088455 | 70087945 | ID=Msa0137580-mRNA-1:cds;Parent=Msa0137580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
