Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043720 | sp|Q6S591|JAG_ARATH | 54.795 | 146 | 48 | 4 | 82 | 223 | 1 | 132 | 2.37e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043720 | Msa0090110 | 0.980800 | 4.617076e-151 | -8.615850e-47 |
| Msa0043720 | Msa0137580 | 0.838873 | 2.219732e-57 | -8.615850e-47 |
| Msa0043720 | Msa0182580 | 0.893003 | 9.417486e-75 | -8.615850e-47 |
| Msa0043720 | Msa1154630 | 0.801703 | 7.946550e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043720 | MtrunA17_Chr1g0209781 | 96.815 | 157 | 1 | 2 | 202 | 357 | 1 | 154 | 1.82e-105 | 306 |
| Msa0043720 | MtrunA17_Chr1g0209791 | 100.000 | 71 | 0 | 0 | 115 | 185 | 7 | 77 | 7.88e-47 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043720 | AT1G68480.1 | 54.795 | 146 | 48 | 4 | 82 | 223 | 1 | 132 | 2.41e-36 | 132 |
| Msa0043720 | AT1G13400.1 | 40.807 | 223 | 91 | 13 | 85 | 299 | 5 | 194 | 3.25e-24 | 99.0 |
Find 96 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAAATTGTTAAGATCTAA+TGG | 0.262058 | 1_1:-75114982 | None:intergenic |
| TTGATCAATGCTGCTGAATT+AGG | 0.273273 | 1_1:-75116960 | None:intergenic |
| AATTGGGGAAGGAGCTATTC+AGG | 0.281026 | 1_1:+75116885 | Msa0043720:CDS |
| CCCACATGATATTCATTCAT+TGG | 0.354688 | 1_1:-75116693 | None:intergenic |
| GATGAACCTGAGAAATATCT+TGG | 0.355971 | 1_1:-75116564 | None:intergenic |
| TATGGAAGGGACATTGAATT+GGG | 0.356851 | 1_1:+75116869 | Msa0043720:CDS |
| TTAATTTGTTGGCAGGTTGC+AGG | 0.357498 | 1_1:+75115598 | Msa0043720:intron |
| TATCTTCCCTTCTAAAAGAA+AGG | 0.375927 | 1_1:+75114763 | Msa0043720:CDS |
| GATGGCTGTGGTGGTGGTGG+TGG | 0.384243 | 1_1:-75116603 | None:intergenic |
| TCTGTAAATCTCAGGCTCTT+GGG | 0.385516 | 1_1:+75115697 | Msa0043720:CDS |
| GGAATAAAACCTTGTCTAAC+CGG | 0.387416 | 1_1:-75116813 | None:intergenic |
| CCAGCTCCCTCTCACCTTGT+AGG | 0.387947 | 1_1:+75116090 | Msa0043720:CDS |
| TCCTTCCCACCACTACTTCC+TGG | 0.390896 | 1_1:-75116834 | None:intergenic |
| GGTTGAGATGGCTGTGGTGG+TGG | 0.391710 | 1_1:-75116609 | None:intergenic |
| TGATCTCCCATGTTATTTGC+TGG | 0.392930 | 1_1:-75116522 | None:intergenic |
| TGAGATGGCTGTGGTGGTGG+TGG | 0.393007 | 1_1:-75116606 | None:intergenic |
| ATATGGAAGGGACATTGAAT+TGG | 0.404608 | 1_1:+75116868 | Msa0043720:CDS |
| TTCTGTAAATCTCAGGCTCT+TGG | 0.411398 | 1_1:+75115696 | Msa0043720:CDS |
| GCAAATTGTTAAGATCTAAT+GGG | 0.416673 | 1_1:-75114981 | None:intergenic |
| CACAACATGAACTATGTTGC+AGG | 0.424362 | 1_1:+75116750 | Msa0043720:CDS |
| ATATAGCTTGCTGTTGGTAT+TGG | 0.426802 | 1_1:-75116498 | None:intergenic |
| TTCTTTCTGTCTCTCTCTGT+CGG | 0.437119 | 1_1:+75114809 | Msa0043720:CDS |
| CGGGTAGATCAGTGTCTTCA+AGG | 0.439966 | 1_1:-75115038 | None:intergenic |
| AGCTATTCAGGAGGAGGAGG+AGG | 0.443032 | 1_1:+75116897 | Msa0043720:CDS |
| AAATATCTTGGGAATCTCAT+AGG | 0.445139 | 1_1:-75116552 | None:intergenic |
| ATTCAGCAGCATTGATCAAT+CGG | 0.448010 | 1_1:+75116964 | Msa0043720:CDS |
| TTCGAGAGAGGAGGTGGCAG+AGG | 0.456623 | 1_1:+75114631 | Msa0043720:CDS |
| AGTTTGAGACTGCAATATAG+AGG | 0.457935 | 1_1:-75114705 | None:intergenic |
| ATCTTCCCTTCTAAAAGAAA+GGG | 0.459427 | 1_1:+75114764 | Msa0043720:CDS |
| GATGAATACTCTAGAGATCA+TGG | 0.470780 | 1_1:+75115006 | Msa0043720:CDS |
| TAGCTTGCTGTTGGTATTGG+TGG | 0.471374 | 1_1:-75116495 | None:intergenic |
| CTGTAAATCTCAGGCTCTTG+GGG | 0.476136 | 1_1:+75115698 | Msa0043720:CDS |
| AGTTCATGTTGTGATATTGC+TGG | 0.481239 | 1_1:-75116740 | None:intergenic |
| AGATTCCCAAGATATTTCTC+AGG | 0.488336 | 1_1:+75116558 | Msa0043720:CDS |
| AGGAGCTATTCAGGAGGAGG+AGG | 0.489907 | 1_1:+75116894 | Msa0043720:CDS |
| CCTCAAGTTCTGTAAATCTC+AGG | 0.490774 | 1_1:+75115689 | Msa0043720:CDS |
| CAGCTCCCTCTCACCTTGTA+GGG | 0.493565 | 1_1:+75116091 | Msa0043720:CDS |
| GAAGGATCATCATCAAGATA+TGG | 0.494180 | 1_1:+75116851 | Msa0043720:CDS |
| CTTGCTGTTGGTATTGGTGG+TGG | 0.494554 | 1_1:-75116492 | None:intergenic |
| GAGAGATTCGAGAGAGGAGG+TGG | 0.495018 | 1_1:+75114625 | Msa0043720:CDS |
| ATGAACCTGAGAAATATCTT+GGG | 0.497678 | 1_1:-75116563 | None:intergenic |
| GTAGGTGAAGAGTACAGATA+TGG | 0.504476 | 1_1:-75116630 | None:intergenic |
| TGATCTCTAGAGTATTCATC+AGG | 0.517140 | 1_1:-75115003 | None:intergenic |
| AGGTGAGAGGGAGCTGGTTG+TGG | 0.522713 | 1_1:-75116084 | None:intergenic |
| CTGAGATTTACAGAACTTGA+GGG | 0.524443 | 1_1:-75115688 | None:intergenic |
| TGTTGTGATATTGCTGGTGG+TGG | 0.527644 | 1_1:-75116734 | None:intergenic |
| TTGATCAATCGGTTTCAAGA+TGG | 0.529982 | 1_1:+75116975 | Msa0043720:CDS |
| GTGCAAGGTTATGATCGTTA+CGG | 0.551633 | 1_1:-75116062 | None:intergenic |
| ATGAACTATGTTGCAGGTGC+AGG | 0.551767 | 1_1:+75116756 | Msa0043720:CDS |
| AAATGTGTAGGGAAAGACAC+TGG | 0.553627 | 1_1:-75116657 | None:intergenic |
| CTATATTCCAGCAAATAACA+TGG | 0.555865 | 1_1:+75116515 | Msa0043720:CDS |
| AGAGAGAGATTCGAGAGAGG+AGG | 0.556113 | 1_1:+75114622 | Msa0043720:CDS |
| AGAAGGGAAGATAAAACTAG+AGG | 0.558231 | 1_1:-75114753 | None:intergenic |
| GCTGGAATATAGCTTGCTGT+TGG | 0.559096 | 1_1:-75116504 | None:intergenic |
| TCCAATGAATGAATATCATG+TGG | 0.567802 | 1_1:+75116692 | Msa0043720:CDS |
| TTTATTCCAGGAAGTAGTGG+TGG | 0.567911 | 1_1:+75116828 | Msa0043720:CDS |
| CATTGGATACATACCCTACA+AGG | 0.569471 | 1_1:-75116104 | None:intergenic |
| GAAAGAGAGAGATTCGAGAG+AGG | 0.570941 | 1_1:+75114619 | Msa0043720:CDS |
| TCCAGGAAGTAGTGGTGGGA+AGG | 0.571603 | 1_1:+75116833 | Msa0043720:CDS |
| ATGGAAGGGACATTGAATTG+GGG | 0.575489 | 1_1:+75116870 | Msa0043720:CDS |
| AGGATGGAAAAGATGAGTGT+GGG | 0.577946 | 1_1:+75115640 | Msa0043720:CDS |
| TATGTTGCAGGTGCAGGTGG+TGG | 0.578820 | 1_1:+75116762 | Msa0043720:CDS |
| GATCATCATCAAGATATGGA+AGG | 0.580590 | 1_1:+75116855 | Msa0043720:CDS |
| CCTGAGATTTACAGAACTTG+AGG | 0.580726 | 1_1:-75115689 | None:intergenic |
| TATTCATTCATTGGATGCTG+AGG | 0.581889 | 1_1:-75116684 | None:intergenic |
| AACTATGTTGCAGGTGCAGG+TGG | 0.582825 | 1_1:+75116759 | Msa0043720:CDS |
| AAGGATGGAAAAGATGAGTG+TGG | 0.583920 | 1_1:+75115639 | Msa0043720:CDS |
| CCTACAAGGTGAGAGGGAGC+TGG | 0.588325 | 1_1:-75116090 | None:intergenic |
| TTACACTTGCATAGGTGCAC+CGG | 0.591451 | 1_1:+75116794 | Msa0043720:CDS |
| GAGTCGAGTTACACTTGCAT+AGG | 0.593277 | 1_1:+75116786 | Msa0043720:CDS |
| AGATCTAATGGGTTTCCTTG+CGG | 0.593490 | 1_1:-75114970 | None:intergenic |
| GGGAAAGACACTGGGCGTGT+AGG | 0.600436 | 1_1:-75116648 | None:intergenic |
| ATCATCATCAAGATATGGAA+GGG | 0.601576 | 1_1:+75116856 | Msa0043720:CDS |
| GAGTACAGATATGGTTGAGA+TGG | 0.603611 | 1_1:-75116621 | None:intergenic |
| GGAAGGAGCTATTCAGGAGG+AGG | 0.605635 | 1_1:+75116891 | Msa0043720:CDS |
| GCTGAGGAATCAAATGTGTA+GGG | 0.605957 | 1_1:-75116668 | None:intergenic |
| AGGGAGCTGGTTGTGGTGCA+AGG | 0.607305 | 1_1:-75116077 | None:intergenic |
| TATAGAGGCTAGTTGAGTGA+TGG | 0.609547 | 1_1:-75114690 | None:intergenic |
| TGGAAAAGATGAGTGTGGGA+AGG | 0.610222 | 1_1:+75115644 | Msa0043720:CDS |
| TATGGTTGAGATGGCTGTGG+TGG | 0.618669 | 1_1:-75116612 | None:intergenic |
| ATAGGTGCACCGGTTAGACA+AGG | 0.620734 | 1_1:+75116804 | Msa0043720:CDS |
| TTATTCCAGGAAGTAGTGGT+GGG | 0.630975 | 1_1:+75116829 | Msa0043720:CDS |
| CTTGAAGACACTGATCTACC+CGG | 0.633510 | 1_1:+75115039 | Msa0043720:CDS |
| TATATTCCAGCAAATAACAT+GGG | 0.637814 | 1_1:+75116516 | Msa0043720:CDS |
| AATGTGTAGGGAAAGACACT+GGG | 0.638777 | 1_1:-75116656 | None:intergenic |
| TGCTGAGGAATCAAATGTGT+AGG | 0.639346 | 1_1:-75116669 | None:intergenic |
| GGAAGACTAGCTGACGTGCA+TGG | 0.639350 | 1_1:-75116041 | None:intergenic |
| TACATACCCTACAAGGTGAG+AGG | 0.640151 | 1_1:-75116097 | None:intergenic |
| ACATACCCTACAAGGTGAGA+GGG | 0.643709 | 1_1:-75116096 | None:intergenic |
| TCATGTTGTGATATTGCTGG+TGG | 0.643930 | 1_1:-75116737 | None:intergenic |
| AAGGGACATTGAATTGGGGA+AGG | 0.649883 | 1_1:+75116874 | Msa0043720:CDS |
| CCAATGAATGAATATCATGT+GGG | 0.659875 | 1_1:+75116693 | Msa0043720:CDS |
| AGATATGGTTGAGATGGCTG+TGG | 0.660186 | 1_1:-75116615 | None:intergenic |
| AGAATAAAACAACAAATGTG+GGG | 0.662187 | 1_1:+75112669 | None:intergenic |
| TGTAAATCTCAGGCTCTTGG+GGG | 0.671796 | 1_1:+75115699 | Msa0043720:CDS |
| TGGGGAAGGAGCTATTCAGG+AGG | 0.735271 | 1_1:+75116888 | Msa0043720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTATATTTTATTTT+TGG | + | chr1_1:75115324-75115343 | Msa0043720:intron | 0.0% |
| !!! | ATATTTTCTAAAGAATAAAA+AGG | - | chr1_1:75113024-75113043 | None:intergenic | 10.0% |
| !!! | AAAATATTTTCTTTAAATTG+AGG | + | chr1_1:75113037-75113056 | Msa0043720:intron | 10.0% |
| !!! | AAAGTTAAATAAATTTTTAC+CGG | - | chr1_1:75115061-75115080 | None:intergenic | 10.0% |
| !!! | TAAATAAAGATTTGATTTAA+AGG | - | chr1_1:75115783-75115802 | None:intergenic | 10.0% |
| !!! | ATCAACTTTTTCTTATAAAT+AGG | - | chr1_1:75113627-75113646 | None:intergenic | 15.0% |
| !! | GTTAAATGTTTCTTATTAAT+AGG | + | chr1_1:75113726-75113745 | Msa0043720:intron | 15.0% |
| !!! | AATGAAGTATTAAATGATTA+AGG | - | chr1_1:75114224-75114243 | None:intergenic | 15.0% |
| !!! | AAGTTAAATAAATTTTTACC+GGG | - | chr1_1:75115060-75115079 | None:intergenic | 15.0% |
| !! | ACAATTTAATAAGAAAGAAA+GGG | - | chr1_1:75115357-75115376 | None:intergenic | 15.0% |
| !! | AACAATTTAATAAGAAAGAA+AGG | - | chr1_1:75115358-75115377 | None:intergenic | 15.0% |
| !! | TAGAGGAAAAATAAATAAAA+AGG | + | chr1_1:75115454-75115473 | Msa0043720:intron | 15.0% |
| !! | AGAGGAAAAATAAATAAAAA+GGG | + | chr1_1:75115455-75115474 | Msa0043720:intron | 15.0% |
| !!! | TATAATTTGATGATGATATA+TGG | + | chr1_1:75115508-75115527 | Msa0043720:intron | 15.0% |
| !!! | ATAATTTGATGATGATATAT+GGG | + | chr1_1:75115509-75115528 | Msa0043720:intron | 15.0% |
| !!! | TCATTATTTTATTTTTGGTT+GGG | - | chr1_1:75115836-75115855 | None:intergenic | 15.0% |
| !!! | ACTAGTCATTATTTTATTTT+TGG | - | chr1_1:75115841-75115860 | None:intergenic | 15.0% |
| !! | CTAATTTATTTGTATGATAA+AGG | - | chr1_1:75116190-75116209 | None:intergenic | 15.0% |
| !! | TCATACAAATAAATTAGAAT+CGG | + | chr1_1:75116193-75116212 | Msa0043720:intron | 15.0% |
| !!! | AAGTAAAAACATTTGATTTA+GGG | - | chr1_1:75116297-75116316 | None:intergenic | 15.0% |
| !!! | AAAGTAAAAACATTTGATTT+AGG | - | chr1_1:75116298-75116317 | None:intergenic | 15.0% |
| !! | AAAATCATAACAATAGTATT+AGG | + | chr1_1:75116351-75116370 | Msa0043720:intron | 15.0% |
| !!! | GAAATATATGAATTGATTTA+GGG | - | chr1_1:75116400-75116419 | None:intergenic | 15.0% |
| !!! | TGAAATATATGAATTGATTT+AGG | - | chr1_1:75116401-75116420 | None:intergenic | 15.0% |
| !! | ATGATGATATATGTATGTTT+GGG | - | chr1_1:75112978-75112997 | None:intergenic | 20.0% |
| !!! | CAATATGAAATTGTTTCTTT+TGG | - | chr1_1:75113264-75113283 | None:intergenic | 20.0% |
| !! | TAACATAAACTTACCATTTA+AGG | + | chr1_1:75114041-75114060 | Msa0043720:intron | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr1_1:75114128-75114147 | None:intergenic | 20.0% |
| !! | TAAATATATAGGGGTAATAT+AGG | + | chr1_1:75114266-75114285 | Msa0043720:intron | 20.0% |
| !! | AAATGATCATAGAAAGTAAT+GGG | - | chr1_1:75114399-75114418 | None:intergenic | 20.0% |
| !! | AAGATAAATATGAATGAGAA+AGG | - | chr1_1:75114869-75114888 | None:intergenic | 20.0% |
| !! | GTGATTATGGAATATAATAT+AGG | - | chr1_1:75115178-75115197 | None:intergenic | 20.0% |
| !! | AAAGTATAATAAGTCTTTCA+TGG | - | chr1_1:75115206-75115225 | None:intergenic | 20.0% |
| !! | CTTCAAATATATTGTCATAA+TGG | + | chr1_1:75115422-75115441 | Msa0043720:intron | 20.0% |
| !!! | ATATATTGTCATAATGGAAA+AGG | + | chr1_1:75115428-75115447 | Msa0043720:intron | 20.0% |
| !!! | GTCATTATTTTATTTTTGGT+TGG | - | chr1_1:75115837-75115856 | None:intergenic | 20.0% |
| !! | GTATTAATTAAAGGAAAAAG+TGG | - | chr1_1:75116134-75116153 | None:intergenic | 20.0% |
| !! | ATATGTGTAGATGAAATTAA+AGG | - | chr1_1:75116167-75116186 | None:intergenic | 20.0% |
| !! | GCTTGAAAATTAAAAGTAAT+TGG | - | chr1_1:75116331-75116350 | None:intergenic | 20.0% |
| !! | AAAGAAAATGGAACTATAAA+TGG | - | chr1_1:75116460-75116479 | None:intergenic | 20.0% |
| ! | GCATTTATACTAAGAAAGAA+AGG | - | chr1_1:75112917-75112936 | None:intergenic | 25.0% |
| ! | TGATGATATATGTATGTTTG+GGG | - | chr1_1:75112977-75112996 | None:intergenic | 25.0% |
| ! | CATGATGATATATGTATGTT+TGG | - | chr1_1:75112979-75112998 | None:intergenic | 25.0% |
| ! | TTAAGGAGAATGTTAACATA+AGG | - | chr1_1:75113367-75113386 | None:intergenic | 25.0% |
| ! | TTCAGATACTAATATATCTC+CGG | - | chr1_1:75113554-75113573 | None:intergenic | 25.0% |
| ! | TCTGAATATCATAATTACGA+CGG | + | chr1_1:75113568-75113587 | Msa0043720:intron | 25.0% |
| ! | AAAGTAAATAATACTCTCTC+CGG | + | chr1_1:75113600-75113619 | Msa0043720:intron | 25.0% |
| !! | CTTTTTCTTATAAATAGGAC+CGG | - | chr1_1:75113622-75113641 | None:intergenic | 25.0% |
| ! | CATTGTATAAATGATGTAGT+TGG | - | chr1_1:75113696-75113715 | None:intergenic | 25.0% |
| ! | ATGTTTCTTATTAATAGGAC+CGG | + | chr1_1:75113731-75113750 | Msa0043720:intron | 25.0% |
| ! | AAAAAAACAAATACTCCTTC+CGG | - | chr1_1:75113753-75113772 | None:intergenic | 25.0% |
| ! | TAGGGAGATTCAAATTTAAA+GGG | - | chr1_1:75113862-75113881 | None:intergenic | 25.0% |
| ! | GAGATTAATCATTCAATCTA+GGG | - | chr1_1:75113880-75113899 | None:intergenic | 25.0% |
| ! | AGAGATTAATCATTCAATCT+AGG | - | chr1_1:75113881-75113900 | None:intergenic | 25.0% |
| !!! | TGGAGTTTTTGACTTTTTTA+AGG | - | chr1_1:75114005-75114024 | None:intergenic | 25.0% |
| !!! | GTTATCAATGCTTTGAAAAT+TGG | - | chr1_1:75114025-75114044 | None:intergenic | 25.0% |
| !!! | AGTAAAAGTATTTGTTGTCT+TGG | - | chr1_1:75114164-75114183 | None:intergenic | 25.0% |
| ! | TCTCTCTGCAATAAATATAT+AGG | + | chr1_1:75114255-75114274 | Msa0043720:intron | 25.0% |
| ! | CTCTCTGCAATAAATATATA+GGG | + | chr1_1:75114256-75114275 | Msa0043720:intron | 25.0% |
| ! | TCTCTGCAATAAATATATAG+GGG | + | chr1_1:75114257-75114276 | Msa0043720:intron | 25.0% |
| !! | GTTCAAAGTATTATTAAACG+TGG | - | chr1_1:75114297-75114316 | None:intergenic | 25.0% |
| ! | TGCAAAAGTGACAATTATAA+AGG | + | chr1_1:75114353-75114372 | Msa0043720:intron | 25.0% |
| ! | AAGTGACAATTATAAAGGAA+CGG | + | chr1_1:75114358-75114377 | Msa0043720:intron | 25.0% |
| ! | CAAATGATCATAGAAAGTAA+TGG | - | chr1_1:75114400-75114419 | None:intergenic | 25.0% |
| ! | CATTACTTTCTATGATCATT+TGG | + | chr1_1:75114398-75114417 | Msa0043720:intron | 25.0% |
| ! | CACAAAATTGAATGAACAAT+AGG | - | chr1_1:75114565-75114584 | None:intergenic | 25.0% |
| !! | TATCTATTTGTTCCATTTTC+AGG | + | chr1_1:75114944-75114963 | Msa0043720:intron | 25.0% |
| ! | GCAAATTGTTAAGATCTAAT+GGG | - | chr1_1:75114984-75115003 | None:intergenic | 25.0% |
| ! | ATGGAAAAAGATAAAAGAGA+AGG | - | chr1_1:75115383-75115402 | None:intergenic | 25.0% |
| ! | ATGATGATATATGGGAAATT+GGG | + | chr1_1:75115517-75115536 | Msa0043720:intron | 25.0% |
| !! | AAATTGGGAATGTTGATTAA+GGG | + | chr1_1:75115532-75115551 | Msa0043720:intron | 25.0% |
| !!! | GGATATTGTTGTTAATTTGT+TGG | + | chr1_1:75115587-75115606 | Msa0043720:intron | 25.0% |
| !! | GAAGTACTAAAATTCTTTCT+TGG | + | chr1_1:75115917-75115936 | Msa0043720:intron | 25.0% |
| !!! | TTTCTTGGTTTTGATTTGAA+AGG | + | chr1_1:75115932-75115951 | Msa0043720:intron | 25.0% |
| ! | TGATGTGTATATATTTGTGT+TGG | + | chr1_1:75115980-75115999 | Msa0043720:intron | 25.0% |
| ! | GATGTGTATATATTTGTGTT+GGG | + | chr1_1:75115981-75116000 | Msa0043720:intron | 25.0% |
| ! | TATTTGTGTTGGGTTTAATT+TGG | + | chr1_1:75115991-75116010 | Msa0043720:intron | 25.0% |
| !! | AGGAGCAAAGTATTAATTAA+AGG | - | chr1_1:75116143-75116162 | None:intergenic | 25.0% |
| ! | GGCATCATGATATAAATTAA+TGG | + | chr1_1:75116372-75116391 | Msa0043720:intron | 25.0% |
| ! | TATTTCATGTATGTCCATTA+TGG | + | chr1_1:75116414-75116433 | Msa0043720:intron | 25.0% |
| ! | ACAACATCTGAAAAAGAAAA+TGG | - | chr1_1:75116472-75116491 | None:intergenic | 25.0% |
| ! | TATATTCCAGCAAATAACAT+GGG | + | chr1_1:75116516-75116535 | Msa0043720:CDS | 25.0% |
| GCTATCAGTATCTATCATTA+GGG | - | chr1_1:75112730-75112749 | None:intergenic | 30.0% | |
| TGCTATCAGTATCTATCATT+AGG | - | chr1_1:75112731-75112750 | None:intergenic | 30.0% | |
| TGCTACTATCTTTCATTCTT+AGG | + | chr1_1:75112934-75112953 | Msa0043720:intron | 30.0% | |
| GCTACTATCTTTCATTCTTA+GGG | + | chr1_1:75112935-75112954 | Msa0043720:intron | 30.0% | |
| !!! | TAGACATTTTTTTCCCTTCT+AGG | + | chr1_1:75113120-75113139 | Msa0043720:intron | 30.0% |
| !!! | AGACATTTTTTTCCCTTCTA+GGG | + | chr1_1:75113121-75113140 | Msa0043720:intron | 30.0% |
| TTCAAGAATTAAACCCATAG+TGG | + | chr1_1:75113510-75113529 | Msa0043720:intron | 30.0% | |
| CTGAATATCATAATTACGAC+GGG | + | chr1_1:75113569-75113588 | Msa0043720:intron | 30.0% | |
| ACTTGACAGATTTAAGTATG+TGG | + | chr1_1:75113791-75113810 | Msa0043720:intron | 30.0% | |
| CTAGGGAGATTCAAATTTAA+AGG | - | chr1_1:75113863-75113882 | None:intergenic | 30.0% | |
| GATTAATCTCTAACTTCTGA+CGG | + | chr1_1:75113890-75113909 | Msa0043720:intron | 30.0% | |
| ATTAATCTCTAACTTCTGAC+GGG | + | chr1_1:75113891-75113910 | Msa0043720:intron | 30.0% | |
| !! | TATCCTAAAAGCACTCTTTA+AGG | + | chr1_1:75113958-75113977 | Msa0043720:intron | 30.0% |
| !!! | AATCCTTAAAGAGTGCTTTT+AGG | - | chr1_1:75113964-75113983 | None:intergenic | 30.0% |
| GACAATTAAAAAGGAACAGA+GGG | - | chr1_1:75114119-75114138 | None:intergenic | 30.0% | |
| TGACAATTAAAAAGGAACAG+AGG | - | chr1_1:75114120-75114139 | None:intergenic | 30.0% | |
| ! | TGAAAGTCTCACAAATTTTG+TGG | + | chr1_1:75114727-75114746 | Msa0043720:CDS | 30.0% |
| ! | TATCTTCCCTTCTAAAAGAA+AGG | + | chr1_1:75114763-75114782 | Msa0043720:CDS | 30.0% |
| ! | ATCTTCCCTTCTAAAAGAAA+GGG | + | chr1_1:75114764-75114783 | Msa0043720:CDS | 30.0% |
| !! | AAACACCCTTTCTTTTAGAA+GGG | - | chr1_1:75114772-75114791 | None:intergenic | 30.0% |
| ! | TAAACACCCTTTCTTTTAGA+AGG | - | chr1_1:75114773-75114792 | None:intergenic | 30.0% |
| GGAACAAATAGATATAGTGA+AGG | - | chr1_1:75114938-75114957 | None:intergenic | 30.0% | |
| GGCAAATTGTTAAGATCTAA+TGG | - | chr1_1:75114985-75115004 | None:intergenic | 30.0% | |
| TTTCATGGTATGTGTGATTA+TGG | - | chr1_1:75115191-75115210 | None:intergenic | 30.0% | |
| AGACTTATTATACTTTCCAC+AGG | + | chr1_1:75115210-75115229 | Msa0043720:intron | 30.0% | |
| ATGGTCAAAAGAATATACCA+CGG | - | chr1_1:75115270-75115289 | None:intergenic | 30.0% | |
| ! | AATTATTGAGCACTGTTTCA+TGG | - | chr1_1:75115289-75115308 | None:intergenic | 30.0% |
| TTTAAAGAAGCTAGCAAGTA+TGG | - | chr1_1:75115402-75115421 | None:intergenic | 30.0% | |
| GATGATGATATATGGGAAAT+TGG | + | chr1_1:75115516-75115535 | Msa0043720:intron | 30.0% | |
| ! | GAAATTGGGAATGTTGATTA+AGG | + | chr1_1:75115531-75115550 | Msa0043720:intron | 30.0% |
| !! | ATTGTTGTTAATTTGTTGGC+AGG | + | chr1_1:75115591-75115610 | Msa0043720:intron | 30.0% |
| GTGTAGATGAAATTAAAGGA+AGG | - | chr1_1:75116163-75116182 | None:intergenic | 30.0% | |
| TACAAAACAATGAGCCATAA+TGG | - | chr1_1:75116431-75116450 | None:intergenic | 30.0% | |
| CTATATTCCAGCAAATAACA+TGG | + | chr1_1:75116515-75116534 | Msa0043720:CDS | 30.0% | |
| AAATATCTTGGGAATCTCAT+AGG | - | chr1_1:75116555-75116574 | None:intergenic | 30.0% | |
| ATGAACCTGAGAAATATCTT+GGG | - | chr1_1:75116566-75116585 | None:intergenic | 30.0% | |
| TCCAATGAATGAATATCATG+TGG | + | chr1_1:75116692-75116711 | Msa0043720:CDS | 30.0% | |
| CCAATGAATGAATATCATGT+GGG | + | chr1_1:75116693-75116712 | Msa0043720:CDS | 30.0% | |
| ATCATCATCAAGATATGGAA+GGG | + | chr1_1:75116856-75116875 | Msa0043720:CDS | 30.0% | |
| ! | GGTTTTTGCAATCTAACTTG+GGG | - | chr1_1:75112709-75112728 | None:intergenic | 35.0% |
| ! | GGGTTTTTGCAATCTAACTT+GGG | - | chr1_1:75112710-75112729 | None:intergenic | 35.0% |
| ! | AGGGTTTTTGCAATCTAACT+TGG | - | chr1_1:75112711-75112730 | None:intergenic | 35.0% |
| ! | CTTAGACTTGCTTCATAGAA+AGG | - | chr1_1:75112755-75112774 | None:intergenic | 35.0% |
| ! | GTAGAATTTTACACCCAGAA+AGG | + | chr1_1:75112783-75112802 | Msa0043720:intron | 35.0% |
| TTTGAGAAACAGGTCATGTA+TGG | - | chr1_1:75112829-75112848 | None:intergenic | 35.0% | |
| AGAAAGGAAGACAAGACATA+GGG | - | chr1_1:75112901-75112920 | None:intergenic | 35.0% | |
| AAGAAAGGAAGACAAGACAT+AGG | - | chr1_1:75112902-75112921 | None:intergenic | 35.0% | |
| ! | ATGTATGTTTGGGGCATTAA+AGG | - | chr1_1:75112968-75112987 | None:intergenic | 35.0% |
| !!! | TAGTCGTTTTTTCCCTAGAA+GGG | - | chr1_1:75113136-75113155 | None:intergenic | 35.0% |
| !!! | ATAGTCGTTTTTTCCCTAGA+AGG | - | chr1_1:75113137-75113156 | None:intergenic | 35.0% |
| AAAACGACTATATCCAGAAG+TGG | + | chr1_1:75113146-75113165 | Msa0043720:intron | 35.0% | |
| ! | TTTTAACATGTGCCCTAATG+AGG | - | chr1_1:75113238-75113257 | None:intergenic | 35.0% |
| ACTCAGACACATTAGCATTA+AGG | - | chr1_1:75113384-75113403 | None:intergenic | 35.0% | |
| TTCTTATTAATAGGACCGGA+AGG | + | chr1_1:75113735-75113754 | Msa0043720:intron | 35.0% | |
| ACACACATAGAAGAACACTT+AGG | + | chr1_1:75113827-75113846 | Msa0043720:intron | 35.0% | |
| TTAATCTCTAACTTCTGACG+GGG | + | chr1_1:75113892-75113911 | Msa0043720:intron | 35.0% | |
| CATGGTTTAGTGACCTTAAA+TGG | - | chr1_1:75114057-75114076 | None:intergenic | 35.0% | |
| TCATTAGCATTTCCCGAAAT+AGG | + | chr1_1:75114089-75114108 | Msa0043720:intron | 35.0% | |
| TGACAATTATAAAGGAACGG+AGG | + | chr1_1:75114361-75114380 | Msa0043720:intron | 35.0% | |
| GACAATTATAAAGGAACGGA+GGG | + | chr1_1:75114362-75114381 | Msa0043720:intron | 35.0% | |
| TTGAATGAACAATAGGACAG+TGG | - | chr1_1:75114558-75114577 | None:intergenic | 35.0% | |
| ! | AATTTTGTGTGTGAGTGTGT+GGG | + | chr1_1:75114576-75114595 | Msa0043720:intron | 35.0% |
| ! | AGTTTGAGACTGCAATATAG+AGG | - | chr1_1:75114708-75114727 | None:intergenic | 35.0% |
| AGAAGGGAAGATAAAACTAG+AGG | - | chr1_1:75114756-75114775 | None:intergenic | 35.0% | |
| ! | TGAGAAAGGTGTAGTATAGT+GGG | - | chr1_1:75114855-75114874 | None:intergenic | 35.0% |
| ! | ATGAGAAAGGTGTAGTATAG+TGG | - | chr1_1:75114856-75114875 | None:intergenic | 35.0% |
| !! | TGATCTCTAGAGTATTCATC+AGG | - | chr1_1:75115006-75115025 | None:intergenic | 35.0% |
| ! | GATGAATACTCTAGAGATCA+TGG | + | chr1_1:75115006-75115025 | Msa0043720:CDS | 35.0% |
| !! | GTGTTCAATTTTGTTTCCTG+TGG | - | chr1_1:75115229-75115248 | None:intergenic | 35.0% |
| TGGTCAAAAGAATATACCAC+GGG | - | chr1_1:75115269-75115288 | None:intergenic | 35.0% | |
| ! | CATAATGGAAAAGGAGTTAG+AGG | + | chr1_1:75115437-75115456 | Msa0043720:intron | 35.0% |
| ! | TGTTGATTAAGGGAAAGTAG+TGG | + | chr1_1:75115542-75115561 | Msa0043720:intron | 35.0% |
| GGTTGCAGGAAAAAGAAAAA+CGG | + | chr1_1:75115612-75115631 | Msa0043720:intron | 35.0% | |
| CTGAGATTTACAGAACTTGA+GGG | - | chr1_1:75115691-75115710 | None:intergenic | 35.0% | |
| ! | ATGAAAAGAATAGCTAGCCT+TGG | - | chr1_1:75115743-75115762 | None:intergenic | 35.0% |
| TAGAATCGGATAAGATGTTG+TGG | + | chr1_1:75116207-75116226 | Msa0043720:intron | 35.0% | |
| AGAATCGGATAAGATGTTGT+GGG | + | chr1_1:75116208-75116227 | Msa0043720:intron | 35.0% | |
| AACCCACCGTACTAAATTAA+TGG | + | chr1_1:75116269-75116288 | Msa0043720:intron | 35.0% | |
| CTCCATTAATTTAGTACGGT+GGG | - | chr1_1:75116274-75116293 | None:intergenic | 35.0% | |
| AGGGCTCCATTAATTTAGTA+CGG | - | chr1_1:75116278-75116297 | None:intergenic | 35.0% | |
| !! | ATATAGCTTGCTGTTGGTAT+TGG | - | chr1_1:75116501-75116520 | None:intergenic | 35.0% |
| AGATTCCCAAGATATTTCTC+AGG | + | chr1_1:75116558-75116577 | Msa0043720:CDS | 35.0% | |
| GATGAACCTGAGAAATATCT+TGG | - | chr1_1:75116567-75116586 | None:intergenic | 35.0% | |
| TATTCATTCATTGGATGCTG+AGG | - | chr1_1:75116687-75116706 | None:intergenic | 35.0% | |
| CCCACATGATATTCATTCAT+TGG | - | chr1_1:75116696-75116715 | None:intergenic | 35.0% | |
| AGTTCATGTTGTGATATTGC+TGG | - | chr1_1:75116743-75116762 | None:intergenic | 35.0% | |
| GGAATAAAACCTTGTCTAAC+CGG | - | chr1_1:75116816-75116835 | None:intergenic | 35.0% | |
| !!! | GTTAGACAAGGTTTTATTCC+AGG | + | chr1_1:75116816-75116835 | Msa0043720:CDS | 35.0% |
| GAAGGATCATCATCAAGATA+TGG | + | chr1_1:75116851-75116870 | Msa0043720:CDS | 35.0% | |
| GATCATCATCAAGATATGGA+AGG | + | chr1_1:75116855-75116874 | Msa0043720:CDS | 35.0% | |
| ATATGGAAGGGACATTGAAT+TGG | + | chr1_1:75116868-75116887 | Msa0043720:CDS | 35.0% | |
| TATGGAAGGGACATTGAATT+GGG | + | chr1_1:75116869-75116888 | Msa0043720:CDS | 35.0% | |
| TTGATCAATGCTGCTGAATT+AGG | - | chr1_1:75116963-75116982 | None:intergenic | 35.0% | |
| !! | ATTCAGCAGCATTGATCAAT+CGG | + | chr1_1:75116964-75116983 | Msa0043720:CDS | 35.0% |
| ! | TTGATCAATCGGTTTCAAGA+TGG | + | chr1_1:75116975-75116994 | Msa0043720:CDS | 35.0% |
| TGGGTGTAAAATTCTACCCA+GGG | - | chr1_1:75112780-75112799 | None:intergenic | 40.0% | |
| ! | GAATTTTACACCCAGAAAGG+AGG | + | chr1_1:75112786-75112805 | Msa0043720:intron | 40.0% |
| TGGTTATTGTGCTAACAGAG+GGG | - | chr1_1:75112859-75112878 | None:intergenic | 40.0% | |
| GTGGTTATTGTGCTAACAGA+GGG | - | chr1_1:75112860-75112879 | None:intergenic | 40.0% | |
| ! | ATGTTTGGGGCATTAAAGGT+GGG | - | chr1_1:75112964-75112983 | None:intergenic | 40.0% |
| ! | TATGTTTGGGGCATTAAAGG+TGG | - | chr1_1:75112965-75112984 | None:intergenic | 40.0% |
| TCACTAACATGTGCCTCATT+AGG | + | chr1_1:75113222-75113241 | Msa0043720:intron | 40.0% | |
| CACTAACATGTGCCTCATTA+GGG | + | chr1_1:75113223-75113242 | Msa0043720:intron | 40.0% | |
| CAAGTGTGTCACATTATGCT+TGG | - | chr1_1:75113776-75113795 | None:intergenic | 40.0% | |
| !! | AACAGAGGGAGTACCTATTT+CGG | - | chr1_1:75114105-75114124 | None:intergenic | 40.0% |
| ! | CAATTTTGTGTGTGAGTGTG+TGG | + | chr1_1:75114575-75114594 | Msa0043720:intron | 40.0% |
| ! | ATTTTGTGTGTGAGTGTGTG+GGG | + | chr1_1:75114577-75114596 | Msa0043720:intron | 40.0% |
| ! | TATAGAGGCTAGTTGAGTGA+TGG | - | chr1_1:75114693-75114712 | None:intergenic | 40.0% |
| TTCTTTCTGTCTCTCTCTGT+CGG | + | chr1_1:75114809-75114828 | Msa0043720:CDS | 40.0% | |
| ! | AGAAAGGTGTAGTATAGTGG+GGG | - | chr1_1:75114853-75114872 | None:intergenic | 40.0% |
| ! | GAGAAAGGTGTAGTATAGTG+GGG | - | chr1_1:75114854-75114873 | None:intergenic | 40.0% |
| !! | AGATCTAATGGGTTTCCTTG+CGG | - | chr1_1:75114973-75114992 | None:intergenic | 40.0% |
| GGTCAAAAGAATATACCACG+GGG | - | chr1_1:75115268-75115287 | None:intergenic | 40.0% | |
| CTCGTCGAAGTTGCTTAAAT+AGG | + | chr1_1:75115566-75115585 | Msa0043720:intron | 40.0% | |
| !! | TTAATTTGTTGGCAGGTTGC+AGG | + | chr1_1:75115598-75115617 | Msa0043720:intron | 40.0% |
| TGCAGGAAAAAGAAAAACGG+CGG | + | chr1_1:75115615-75115634 | Msa0043720:CDS | 40.0% | |
| AAGGATGGAAAAGATGAGTG+TGG | + | chr1_1:75115639-75115658 | Msa0043720:CDS | 40.0% | |
| AGGATGGAAAAGATGAGTGT+GGG | + | chr1_1:75115640-75115659 | Msa0043720:CDS | 40.0% | |
| CCTGAGATTTACAGAACTTG+AGG | - | chr1_1:75115692-75115711 | None:intergenic | 40.0% | |
| CCTCAAGTTCTGTAAATCTC+AGG | + | chr1_1:75115689-75115708 | Msa0043720:CDS | 40.0% | |
| TTCTGTAAATCTCAGGCTCT+TGG | + | chr1_1:75115696-75115715 | Msa0043720:CDS | 40.0% | |
| TCTGTAAATCTCAGGCTCTT+GGG | + | chr1_1:75115697-75115716 | Msa0043720:CDS | 40.0% | |
| !! | AAAAGAATAGCTAGCCTTGG+CGG | - | chr1_1:75115740-75115759 | None:intergenic | 40.0% |
| TGACATGTGACAACGTTTCA+TGG | - | chr1_1:75115878-75115897 | None:intergenic | 40.0% | |
| GAAAGGTCTTTCTCTTGTGT+TGG | + | chr1_1:75115949-75115968 | Msa0043720:intron | 40.0% | |
| !! | GGTTTAATTTGGTGCAGAGA+GGG | + | chr1_1:75116002-75116021 | Msa0043720:intron | 40.0% |
| GTGCAAGGTTATGATCGTTA+CGG | - | chr1_1:75116065-75116084 | None:intergenic | 40.0% | |
| CATTGGATACATACCCTACA+AGG | - | chr1_1:75116107-75116126 | None:intergenic | 40.0% | |
| AAGGAAAAAGTGGTGTGCAT+TGG | - | chr1_1:75116124-75116143 | None:intergenic | 40.0% | |
| GCTCCATTAATTTAGTACGG+TGG | - | chr1_1:75116275-75116294 | None:intergenic | 40.0% | |
| ! | TGATCTCCCATGTTATTTGC+TGG | - | chr1_1:75116525-75116544 | None:intergenic | 40.0% |
| GAGTACAGATATGGTTGAGA+TGG | - | chr1_1:75116624-75116643 | None:intergenic | 40.0% | |
| ! | GTAGGTGAAGAGTACAGATA+TGG | - | chr1_1:75116633-75116652 | None:intergenic | 40.0% |
| AATGTGTAGGGAAAGACACT+GGG | - | chr1_1:75116659-75116678 | None:intergenic | 40.0% | |
| AAATGTGTAGGGAAAGACAC+TGG | - | chr1_1:75116660-75116679 | None:intergenic | 40.0% | |
| GCTGAGGAATCAAATGTGTA+GGG | - | chr1_1:75116671-75116690 | None:intergenic | 40.0% | |
| TGCTGAGGAATCAAATGTGT+AGG | - | chr1_1:75116672-75116691 | None:intergenic | 40.0% | |
| TCATGTTGTGATATTGCTGG+TGG | - | chr1_1:75116740-75116759 | None:intergenic | 40.0% | |
| CACAACATGAACTATGTTGC+AGG | + | chr1_1:75116750-75116769 | Msa0043720:CDS | 40.0% | |
| !!! | GGTTTTATTCCAGGAAGTAG+TGG | + | chr1_1:75116825-75116844 | Msa0043720:CDS | 40.0% |
| TTTATTCCAGGAAGTAGTGG+TGG | + | chr1_1:75116828-75116847 | Msa0043720:CDS | 40.0% | |
| TTATTCCAGGAAGTAGTGGT+GGG | + | chr1_1:75116829-75116848 | Msa0043720:CDS | 40.0% | |
| ATGGAAGGGACATTGAATTG+GGG | + | chr1_1:75116870-75116889 | Msa0043720:CDS | 40.0% | |
| TTTGCAATCTAACTTGGGGC+CGG | - | chr1_1:75112705-75112724 | None:intergenic | 45.0% | |
| GGGTGTAAAATTCTACCCAG+GGG | - | chr1_1:75112779-75112798 | None:intergenic | 45.0% | |
| CTGGGTGTAAAATTCTACCC+AGG | - | chr1_1:75112781-75112800 | None:intergenic | 45.0% | |
| TAGCTCAATGCCTCCTTTCT+GGG | - | chr1_1:75112799-75112818 | None:intergenic | 45.0% | |
| ATAGCTCAATGCCTCCTTTC+TGG | - | chr1_1:75112800-75112819 | None:intergenic | 45.0% | |
| !! | AAGGAGGCATTGAGCTATTG+TGG | + | chr1_1:75112802-75112821 | Msa0043720:intron | 45.0% |
| GTTATTGTGCTAACAGAGGG+GGG | - | chr1_1:75112857-75112876 | None:intergenic | 45.0% | |
| GGTTATTGTGCTAACAGAGG+GGG | - | chr1_1:75112858-75112877 | None:intergenic | 45.0% | |
| CGTGGTTATTGTGCTAACAG+AGG | - | chr1_1:75112861-75112880 | None:intergenic | 45.0% | |
| GTACGTAGAGACATTTAGCG+TGG | - | chr1_1:75112879-75112898 | None:intergenic | 45.0% | |
| ATCCAGAAGTGGTACAAGCT+AGG | + | chr1_1:75113157-75113176 | Msa0043720:intron | 45.0% | |
| ! | ATCCTAGCTTGTACCACTTC+TGG | - | chr1_1:75113162-75113181 | None:intergenic | 45.0% |
| TTAAACCCATAGTGGCACAG+AGG | + | chr1_1:75113518-75113537 | Msa0043720:intron | 45.0% | |
| TAAACCCATAGTGGCACAGA+GGG | + | chr1_1:75113519-75113538 | Msa0043720:intron | 45.0% | |
| TAATGAGTGTCCTCGTAGCA+TGG | - | chr1_1:75114075-75114094 | None:intergenic | 45.0% | |
| !! | ACAGAGGGAGTACCTATTTC+GGG | - | chr1_1:75114104-75114123 | None:intergenic | 45.0% |
| CTAGCTAACTTCGTCTGGTT+TGG | - | chr1_1:75114439-75114458 | None:intergenic | 45.0% | |
| ! | TTTTGTGTGTGAGTGTGTGG+GGG | + | chr1_1:75114578-75114597 | Msa0043720:intron | 45.0% |
| GAAAGAGAGAGATTCGAGAG+AGG | + | chr1_1:75114619-75114638 | Msa0043720:CDS | 45.0% | |
| CTCTGTCGGTACAATCATGT+AGG | + | chr1_1:75114823-75114842 | Msa0043720:intron | 45.0% | |
| CTTGAAGACACTGATCTACC+CGG | + | chr1_1:75115039-75115058 | Msa0043720:CDS | 45.0% | |
| ! | GTCATATTTTGTCATCCCCG+TGG | + | chr1_1:75115250-75115269 | Msa0043720:intron | 45.0% |
| GCAGGAAAAAGAAAAACGGC+GGG | + | chr1_1:75115616-75115635 | Msa0043720:CDS | 45.0% | |
| GAAAAAGAAAAACGGCGGGA+AGG | + | chr1_1:75115620-75115639 | Msa0043720:CDS | 45.0% | |
| TGGAAAAGATGAGTGTGGGA+AGG | + | chr1_1:75115644-75115663 | Msa0043720:CDS | 45.0% | |
| CTGTAAATCTCAGGCTCTTG+GGG | + | chr1_1:75115698-75115717 | Msa0043720:CDS | 45.0% | |
| TGTAAATCTCAGGCTCTTGG+GGG | + | chr1_1:75115699-75115718 | Msa0043720:CDS | 45.0% | |
| !! | GGGTTTAATTTGGTGCAGAG+AGG | + | chr1_1:75116001-75116020 | Msa0043720:intron | 45.0% |
| ACATACCCTACAAGGTGAGA+GGG | - | chr1_1:75116099-75116118 | None:intergenic | 45.0% | |
| TACATACCCTACAAGGTGAG+AGG | - | chr1_1:75116100-75116119 | None:intergenic | 45.0% | |
| ! | TGAGATGAGTGGGAGTGTAT+GGG | - | chr1_1:75116240-75116259 | None:intergenic | 45.0% |
| TAAACCGCTGTGAGATGAGT+GGG | - | chr1_1:75116250-75116269 | None:intergenic | 45.0% | |
| TTAAACCGCTGTGAGATGAG+TGG | - | chr1_1:75116251-75116270 | None:intergenic | 45.0% | |
| !! | TAGCTTGCTGTTGGTATTGG+TGG | - | chr1_1:75116498-75116517 | None:intergenic | 45.0% |
| !! | GCTGGAATATAGCTTGCTGT+TGG | - | chr1_1:75116507-75116526 | None:intergenic | 45.0% |
| AGATATGGTTGAGATGGCTG+TGG | - | chr1_1:75116618-75116637 | None:intergenic | 45.0% | |
| TGTTGTGATATTGCTGGTGG+TGG | - | chr1_1:75116737-75116756 | None:intergenic | 45.0% | |
| ATGAACTATGTTGCAGGTGC+AGG | + | chr1_1:75116756-75116775 | Msa0043720:CDS | 45.0% | |
| GAGTCGAGTTACACTTGCAT+AGG | + | chr1_1:75116786-75116805 | Msa0043720:CDS | 45.0% | |
| TTACACTTGCATAGGTGCAC+CGG | + | chr1_1:75116794-75116813 | Msa0043720:CDS | 45.0% | |
| AAGGGACATTGAATTGGGGA+AGG | + | chr1_1:75116874-75116893 | Msa0043720:CDS | 45.0% | |
| AATTGGGGAAGGAGCTATTC+AGG | + | chr1_1:75116885-75116904 | Msa0043720:CDS | 45.0% | |
| !! | TATTATTAATAATTAACATA+AGG | + | chr1_1:75113196-75113215 | Msa0043720:intron | 5.0% |
| !! | ATTATTAATAATTAACATAA+GGG | + | chr1_1:75113197-75113216 | Msa0043720:intron | 5.0% |
| TGAAGCAAGTCTAAGTCCCC+TGG | + | chr1_1:75112760-75112779 | Msa0043720:intron | 50.0% | |
| GAAGCAAGTCTAAGTCCCCT+GGG | + | chr1_1:75112761-75112780 | Msa0043720:intron | 50.0% | |
| GGGGGACATGTTTGAGAAAC+AGG | - | chr1_1:75112839-75112858 | None:intergenic | 50.0% | |
| AAACCCATAGTGGCACAGAG+GGG | + | chr1_1:75113520-75113539 | Msa0043720:intron | 50.0% | |
| ! | AAACCCCTCTGTGCCACTAT+GGG | - | chr1_1:75113526-75113545 | None:intergenic | 50.0% |
| ! | TAAACCCCTCTGTGCCACTA+TGG | - | chr1_1:75113527-75113546 | None:intergenic | 50.0% |
| GCACAGAGGGGTTTAAACTC+CGG | + | chr1_1:75113532-75113551 | Msa0043720:intron | 50.0% | |
| GGTCACTAAACCATGCTACG+AGG | + | chr1_1:75114062-75114081 | Msa0043720:intron | 50.0% | |
| CCTAGCTAGCTAACTTCGTC+TGG | - | chr1_1:75114444-75114463 | None:intergenic | 50.0% | |
| CCAGACGAAGTTAGCTAGCT+AGG | + | chr1_1:75114441-75114460 | Msa0043720:intron | 50.0% | |
| AGAGAGAGATTCGAGAGAGG+AGG | + | chr1_1:75114622-75114641 | Msa0043720:CDS | 50.0% | |
| !! | TCCATTTTCAGGAGACCGCA+AGG | + | chr1_1:75114955-75114974 | Msa0043720:intron | 50.0% |
| TCCTTGCGGTCTCCTGAAAA+TGG | - | chr1_1:75114959-75114978 | None:intergenic | 50.0% | |
| CGGGTAGATCAGTGTCTTCA+AGG | - | chr1_1:75115041-75115060 | None:intergenic | 50.0% | |
| AAGAAAAACGGCGGGAAGGA+TGG | + | chr1_1:75115624-75115643 | Msa0043720:CDS | 50.0% | |
| ! | GTGAGATGAGTGGGAGTGTA+TGG | - | chr1_1:75116241-75116260 | None:intergenic | 50.0% |
| !! | CTTGCTGTTGGTATTGGTGG+TGG | - | chr1_1:75116495-75116514 | None:intergenic | 50.0% |
| TATGGTTGAGATGGCTGTGG+TGG | - | chr1_1:75116615-75116634 | None:intergenic | 50.0% | |
| AACTATGTTGCAGGTGCAGG+TGG | + | chr1_1:75116759-75116778 | Msa0043720:CDS | 50.0% | |
| !! | ATAGGTGCACCGGTTAGACA+AGG | + | chr1_1:75116804-75116823 | Msa0043720:CDS | 50.0% |
| GAGAGATTCGAGAGAGGAGG+TGG | + | chr1_1:75114625-75114644 | Msa0043720:CDS | 55.0% | |
| !! | ATAGCTAGCCTTGGCGGTGA+CGG | - | chr1_1:75115734-75115753 | None:intergenic | 55.0% |
| ! | GGAAGACTAGCTGACGTGCA+TGG | - | chr1_1:75116044-75116063 | None:intergenic | 55.0% |
| CAGCTCCCTCTCACCTTGTA+GGG | + | chr1_1:75116091-75116110 | Msa0043720:CDS | 55.0% | |
| CACTCCCACTCATCTCACAG+CGG | + | chr1_1:75116243-75116262 | Msa0043720:intron | 55.0% | |
| !! | TGGTGGTGGTGGTGGAATGT+GGG | - | chr1_1:75116595-75116614 | None:intergenic | 55.0% |
| TATGTTGCAGGTGCAGGTGG+TGG | + | chr1_1:75116762-75116781 | Msa0043720:CDS | 55.0% | |
| ! | TCCAGGAAGTAGTGGTGGGA+AGG | + | chr1_1:75116833-75116852 | Msa0043720:CDS | 55.0% |
| TCCTTCCCACCACTACTTCC+TGG | - | chr1_1:75116837-75116856 | None:intergenic | 55.0% | |
| TGGGGAAGGAGCTATTCAGG+AGG | + | chr1_1:75116888-75116907 | Msa0043720:CDS | 55.0% | |
| GGAAGGAGCTATTCAGGAGG+AGG | + | chr1_1:75116891-75116910 | Msa0043720:CDS | 55.0% | |
| AGGAGCTATTCAGGAGGAGG+AGG | + | chr1_1:75116894-75116913 | Msa0043720:CDS | 55.0% | |
| AGCTATTCAGGAGGAGGAGG+AGG | + | chr1_1:75116897-75116916 | Msa0043720:CDS | 55.0% | |
| TATTCAGGAGGAGGAGGAGG+AGG | + | chr1_1:75116900-75116919 | Msa0043720:CDS | 55.0% | |
| TTCGAGAGAGGAGGTGGCAG+AGG | + | chr1_1:75114631-75114650 | Msa0043720:CDS | 60.0% | |
| CACATGAACCGTCACCGCCA+AGG | + | chr1_1:75115723-75115742 | Msa0043720:intron | 60.0% | |
| AGGGAGCTGGTTGTGGTGCA+AGG | - | chr1_1:75116080-75116099 | None:intergenic | 60.0% | |
| AGGTGAGAGGGAGCTGGTTG+TGG | - | chr1_1:75116087-75116106 | None:intergenic | 60.0% | |
| CCTACAAGGTGAGAGGGAGC+TGG | - | chr1_1:75116093-75116112 | None:intergenic | 60.0% | |
| CCAGCTCCCTCTCACCTTGT+AGG | + | chr1_1:75116090-75116109 | Msa0043720:CDS | 60.0% | |
| !! | GTGGTGGTGGTGGTGGAATG+TGG | - | chr1_1:75116596-75116615 | None:intergenic | 60.0% |
| !! | TGAGATGGCTGTGGTGGTGG+TGG | - | chr1_1:75116609-75116628 | None:intergenic | 60.0% |
| GGTTGAGATGGCTGTGGTGG+TGG | - | chr1_1:75116612-75116631 | None:intergenic | 60.0% | |
| GGGAAAGACACTGGGCGTGT+AGG | - | chr1_1:75116651-75116670 | None:intergenic | 60.0% | |
| !! | GATGGCTGTGGTGGTGGTGG+TGG | - | chr1_1:75116606-75116625 | None:intergenic | 65.0% |
| TCAGGAGGAGGAGGAGGAGG+AGG | + | chr1_1:75116903-75116922 | Msa0043720:CDS | 65.0% | |
| !! | GGCTGTGGTGGTGGTGGTGG+TGG | - | chr1_1:75116603-75116622 | None:intergenic | 70.0% |
| GGAGGAGGAGGAGGAGGAGG+AGG | + | chr1_1:75116906-75116925 | Msa0043720:CDS | 70.0% | |
| GGAGGAGGAGGAGGAGGAGG+AGG | + | chr1_1:75116906-75116925 | Msa0043720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75112684 | 75117004 | 75112684 | ID=Msa0043720;Name=Msa0043720 |
| chr1_1 | mRNA | 75112684 | 75117004 | 75112684 | ID=Msa0043720-mRNA-1;Parent=Msa0043720;Name=Msa0043720-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0.2|0|0.83|0.6|0.5|6|0|357 |
| chr1_1 | exon | 75112684 | 75112690 | 75112684 | ID=Msa0043720-mRNA-1:exon:25328;Parent=Msa0043720-mRNA-1 |
| chr1_1 | exon | 75114603 | 75114840 | 75114603 | ID=Msa0043720-mRNA-1:exon:25329;Parent=Msa0043720-mRNA-1 |
| chr1_1 | exon | 75114966 | 75115060 | 75114966 | ID=Msa0043720-mRNA-1:exon:25330;Parent=Msa0043720-mRNA-1 |
| chr1_1 | exon | 75115613 | 75115732 | 75115613 | ID=Msa0043720-mRNA-1:exon:25331;Parent=Msa0043720-mRNA-1 |
| chr1_1 | exon | 75116019 | 75116112 | 75116019 | ID=Msa0043720-mRNA-1:exon:25332;Parent=Msa0043720-mRNA-1 |
| chr1_1 | exon | 75116485 | 75117004 | 75116485 | ID=Msa0043720-mRNA-1:exon:25333;Parent=Msa0043720-mRNA-1 |
| chr1_1 | CDS | 75112684 | 75112690 | 75112684 | ID=Msa0043720-mRNA-1:cds;Parent=Msa0043720-mRNA-1 |
| chr1_1 | CDS | 75114603 | 75114840 | 75114603 | ID=Msa0043720-mRNA-1:cds;Parent=Msa0043720-mRNA-1 |
| chr1_1 | CDS | 75114966 | 75115060 | 75114966 | ID=Msa0043720-mRNA-1:cds;Parent=Msa0043720-mRNA-1 |
| chr1_1 | CDS | 75115613 | 75115732 | 75115613 | ID=Msa0043720-mRNA-1:cds;Parent=Msa0043720-mRNA-1 |
| chr1_1 | CDS | 75116019 | 75116112 | 75116019 | ID=Msa0043720-mRNA-1:cds;Parent=Msa0043720-mRNA-1 |
| chr1_1 | CDS | 75116485 | 75117004 | 75116485 | ID=Msa0043720-mRNA-1:cds;Parent=Msa0043720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
