Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182580 | KEH44209.1 | 94.690 | 339 | 4 | 4 | 18 | 348 | 42 | 374 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182580 | sp|Q6S591|JAG_ARATH | 42.199 | 282 | 116 | 12 | 79 | 346 | 1 | 249 | 7.76e-36 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182580 | A0A072VQB0 | 94.690 | 339 | 4 | 4 | 18 | 348 | 42 | 374 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043720 | Msa0182580 | 0.893003 | 9.417486e-75 | -8.615850e-47 |
| Msa0090110 | Msa0182580 | 0.905981 | 2.414844e-80 | -8.615850e-47 |
| Msa0137580 | Msa0182580 | 0.847893 | 8.667075e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182580 | MtrunA17_Chr1g0209781 | 96.753 | 154 | 1 | 2 | 199 | 348 | 1 | 154 | 7.88e-104 | 301 |
| Msa0182580 | MtrunA17_Chr1g0209791 | 100.000 | 71 | 0 | 0 | 112 | 182 | 7 | 77 | 3.89e-47 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182580 | AT1G68480.1 | 42.199 | 282 | 116 | 12 | 79 | 346 | 1 | 249 | 7.88e-37 | 133 |
| Msa0182580 | AT1G13400.1 | 40.807 | 223 | 91 | 13 | 82 | 296 | 5 | 194 | 2.21e-24 | 99.4 |
Find 93 sgRNAs with CRISPR-Local
Find 388 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAAATTGTTAAGATCTAA+TGG | 0.262058 | 1_4:+71187707 | None:intergenic |
| TTGATCAATGCTGCTGAATT+AGG | 0.273273 | 1_4:+71185738 | None:intergenic |
| AATTGGGGAAGGAGCTATTC+AGG | 0.281026 | 1_4:-71185795 | Msa0182580:CDS |
| CCCACATGATATTCATTCAT+TGG | 0.354688 | 1_4:+71185987 | None:intergenic |
| TATGGAAGGGACATTGAATT+GGG | 0.356851 | 1_4:-71185811 | Msa0182580:CDS |
| TTAATTTGTTGGCAGGTTGC+AGG | 0.357498 | 1_4:-71187091 | Msa0182580:intron |
| TATCTTCCCTTCTAAAAGAA+AGG | 0.375927 | 1_4:-71187926 | Msa0182580:CDS |
| GATGGCTGTGGTGGTGGTGG+TGG | 0.384243 | 1_4:+71186077 | None:intergenic |
| TCTGTAAATCTCAGGCTCTT+GGG | 0.385516 | 1_4:-71186992 | Msa0182580:CDS |
| GGAATAAAACCTTGTCTAAC+CGG | 0.387416 | 1_4:+71185867 | None:intergenic |
| CCAGCTCCCTCTCACCTTGT+AGG | 0.387947 | 1_4:-71186590 | Msa0182580:CDS |
| TCCTTCCCACCACTACTTCC+TGG | 0.390896 | 1_4:+71185846 | None:intergenic |
| GGTTGAGATGGCTGTGGTGG+TGG | 0.391710 | 1_4:+71186071 | None:intergenic |
| TGATCTCCCATGTTATTTGC+TGG | 0.392930 | 1_4:+71186158 | None:intergenic |
| TGAGATGGCTGTGGTGGTGG+TGG | 0.393007 | 1_4:+71186074 | None:intergenic |
| ATATGGAAGGGACATTGAAT+TGG | 0.404608 | 1_4:-71185812 | Msa0182580:CDS |
| TTCTGTAAATCTCAGGCTCT+TGG | 0.411398 | 1_4:-71186993 | Msa0182580:CDS |
| GCAAATTGTTAAGATCTAAT+GGG | 0.416673 | 1_4:+71187708 | None:intergenic |
| GATGAACCTGAGAAATATCT+TGG | 0.416710 | 1_4:+71186116 | None:intergenic |
| CACAACATGAACTATGTTGC+AGG | 0.424362 | 1_4:-71185930 | Msa0182580:CDS |
| ATATAGCTTGCTGTTGGTAT+TGG | 0.426802 | 1_4:+71186182 | None:intergenic |
| TTCTTTCTGTCTCTCTCTGT+CGG | 0.437119 | 1_4:-71187880 | Msa0182580:CDS |
| CGGGTAGATCAGTGTCTTCA+AGG | 0.439966 | 1_4:+71187651 | None:intergenic |
| AAATATCTTGGGAATCTCAT+AGG | 0.445139 | 1_4:+71186128 | None:intergenic |
| ATTCAGCAGCATTGATCAAT+CGG | 0.448010 | 1_4:-71185734 | Msa0182580:CDS |
| TTCGAGAGAGGAGGTGGCAG+AGG | 0.456623 | 1_4:-71188058 | Msa0182580:CDS |
| AGTTTGAGACTGCAATATAG+AGG | 0.457935 | 1_4:+71187984 | None:intergenic |
| ATCTTCCCTTCTAAAAGAAA+GGG | 0.459427 | 1_4:-71187925 | Msa0182580:CDS |
| GATGAATACTCTAGAGATCA+TGG | 0.470780 | 1_4:-71187683 | Msa0182580:CDS |
| TAGCTTGCTGTTGGTATTGG+TGG | 0.471374 | 1_4:+71186185 | None:intergenic |
| CTGTAAATCTCAGGCTCTTG+GGG | 0.476136 | 1_4:-71186991 | Msa0182580:CDS |
| AGTTCATGTTGTGATATTGC+TGG | 0.481239 | 1_4:+71185940 | None:intergenic |
| AGATTCCCAAGATATTTCTC+AGG | 0.488336 | 1_4:-71186122 | Msa0182580:CDS |
| CCTCAAGTTCTGTAAATCTC+AGG | 0.490774 | 1_4:-71187000 | Msa0182580:CDS |
| CAGCTCCCTCTCACCTTGTA+GGG | 0.493565 | 1_4:-71186589 | Msa0182580:intron |
| GAAGGATCATCATCAAGATA+TGG | 0.494180 | 1_4:-71185829 | Msa0182580:CDS |
| CTTGCTGTTGGTATTGGTGG+TGG | 0.494554 | 1_4:+71186188 | None:intergenic |
| GAGAGATTCGAGAGAGGAGG+TGG | 0.495018 | 1_4:-71188064 | Msa0182580:CDS |
| ATGAACCTGAGAAATATCTT+GGG | 0.500848 | 1_4:+71186117 | None:intergenic |
| GTAGGTGAAGAGTACAGATA+TGG | 0.504476 | 1_4:+71186050 | None:intergenic |
| TGATCTCTAGAGTATTCATC+AGG | 0.517140 | 1_4:+71187686 | None:intergenic |
| AGGTGAGAGGGAGCTGGTTG+TGG | 0.522713 | 1_4:+71186596 | None:intergenic |
| CTGAGATTTACAGAACTTGA+GGG | 0.524443 | 1_4:+71187001 | None:intergenic |
| TGTTGTGATATTGCTGGTGG+TGG | 0.527644 | 1_4:+71185946 | None:intergenic |
| TTGATCAATCGGTTTCAAGA+TGG | 0.529982 | 1_4:-71185723 | Msa0182580:CDS |
| GTGCAAGGTTATGATCGTTA+CGG | 0.551633 | 1_4:+71186618 | None:intergenic |
| ATGAACTATGTTGCAGGTGC+AGG | 0.551767 | 1_4:-71185924 | Msa0182580:CDS |
| AAATGTGTAGGGAAAGACAC+TGG | 0.553627 | 1_4:+71186023 | None:intergenic |
| CTATATTCCAGCAAATAACA+TGG | 0.555865 | 1_4:-71186165 | Msa0182580:CDS |
| AGAGAGAGATTCGAGAGAGG+AGG | 0.556113 | 1_4:-71188067 | Msa0182580:CDS |
| AGAAGGGAAGATAAAACTAG+AGG | 0.558231 | 1_4:+71187936 | None:intergenic |
| GCTGGAATATAGCTTGCTGT+TGG | 0.559096 | 1_4:+71186176 | None:intergenic |
| TCCAATGAATGAATATCATG+TGG | 0.567802 | 1_4:-71185988 | Msa0182580:CDS |
| TTTATTCCAGGAAGTAGTGG+TGG | 0.567911 | 1_4:-71185852 | Msa0182580:CDS |
| CATTGGATACATACCCTACA+AGG | 0.569471 | 1_4:+71186576 | None:intergenic |
| GAAAGAGAGAGATTCGAGAG+AGG | 0.570941 | 1_4:-71188070 | Msa0182580:CDS |
| TCCAGGAAGTAGTGGTGGGA+AGG | 0.571603 | 1_4:-71185847 | Msa0182580:CDS |
| ATGGAAGGGACATTGAATTG+GGG | 0.575489 | 1_4:-71185810 | Msa0182580:CDS |
| AGGATGGAAAAGATGAGTGT+GGG | 0.577946 | 1_4:-71187049 | Msa0182580:CDS |
| TATGTTGCAGGTGCAGGTGG+TGG | 0.578820 | 1_4:-71185918 | Msa0182580:CDS |
| GATCATCATCAAGATATGGA+AGG | 0.580590 | 1_4:-71185825 | Msa0182580:CDS |
| CCTGAGATTTACAGAACTTG+AGG | 0.580726 | 1_4:+71187000 | None:intergenic |
| TATTCATTCATTGGATGCTG+AGG | 0.581889 | 1_4:+71185996 | None:intergenic |
| AACTATGTTGCAGGTGCAGG+TGG | 0.582825 | 1_4:-71185921 | Msa0182580:CDS |
| AAGGATGGAAAAGATGAGTG+TGG | 0.583920 | 1_4:-71187050 | Msa0182580:CDS |
| CCTACAAGGTGAGAGGGAGC+TGG | 0.588325 | 1_4:+71186590 | None:intergenic |
| TTACACTTGCATAGGTGCAC+CGG | 0.591451 | 1_4:-71185886 | Msa0182580:CDS |
| GAGTCGAGTTACACTTGCAT+AGG | 0.593277 | 1_4:-71185894 | Msa0182580:CDS |
| AGATCTAATGGGTTTCCTTG+CGG | 0.593490 | 1_4:+71187719 | None:intergenic |
| GGGAAAGACACTGGGCGTGT+AGG | 0.600436 | 1_4:+71186032 | None:intergenic |
| ATCATCATCAAGATATGGAA+GGG | 0.601576 | 1_4:-71185824 | Msa0182580:CDS |
| GAGTACAGATATGGTTGAGA+TGG | 0.603611 | 1_4:+71186059 | None:intergenic |
| GCTGAGGAATCAAATGTGTA+GGG | 0.605957 | 1_4:+71186012 | None:intergenic |
| AGGGAGCTGGTTGTGGTGCA+AGG | 0.607305 | 1_4:+71186603 | None:intergenic |
| TATAGAGGCTAGTTGAGTGA+TGG | 0.609547 | 1_4:+71187999 | None:intergenic |
| GGAAGGAGCTATTCAGGAGG+AGG | 0.609737 | 1_4:-71185789 | Msa0182580:CDS |
| TGGAAAAGATGAGTGTGGGA+AGG | 0.610222 | 1_4:-71187045 | Msa0182580:CDS |
| TATGGTTGAGATGGCTGTGG+TGG | 0.618669 | 1_4:+71186068 | None:intergenic |
| ATAGGTGCACCGGTTAGACA+AGG | 0.620734 | 1_4:-71185876 | Msa0182580:CDS |
| TTATTCCAGGAAGTAGTGGT+GGG | 0.630975 | 1_4:-71185851 | Msa0182580:CDS |
| CTTGAAGACACTGATCTACC+CGG | 0.633510 | 1_4:-71187650 | Msa0182580:intron |
| TATATTCCAGCAAATAACAT+GGG | 0.637814 | 1_4:-71186164 | Msa0182580:CDS |
| AATGTGTAGGGAAAGACACT+GGG | 0.638777 | 1_4:+71186024 | None:intergenic |
| TGCTGAGGAATCAAATGTGT+AGG | 0.639346 | 1_4:+71186011 | None:intergenic |
| GGAAGACTAGCTGACGTGCA+TGG | 0.639350 | 1_4:+71186639 | None:intergenic |
| TACATACCCTACAAGGTGAG+AGG | 0.640151 | 1_4:+71186583 | None:intergenic |
| ACATACCCTACAAGGTGAGA+GGG | 0.643709 | 1_4:+71186584 | None:intergenic |
| TCATGTTGTGATATTGCTGG+TGG | 0.643930 | 1_4:+71185943 | None:intergenic |
| AAGGGACATTGAATTGGGGA+AGG | 0.649883 | 1_4:-71185806 | Msa0182580:CDS |
| CCAATGAATGAATATCATGT+GGG | 0.659875 | 1_4:-71185987 | Msa0182580:CDS |
| AGATATGGTTGAGATGGCTG+TGG | 0.660186 | 1_4:+71186065 | None:intergenic |
| TGTAAATCTCAGGCTCTTGG+GGG | 0.671796 | 1_4:-71186990 | Msa0182580:CDS |
| TGGGGAAGGAGCTATTCAGG+AGG | 0.735271 | 1_4:-71185792 | Msa0182580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTATATTTTATTTT+TGG | - | chr1_4:71186438-71186457 | Msa0182580:intron | 0.0% |
| !!! | ATTATATTATATTTTATTTT+TGG | - | chr1_4:71186438-71186457 | Msa0182580:intron | 0.0% |
| !!! | AAAGTTAAATAAATTTTTAC+CGG | + | chr1_4:71186175-71186194 | None:intergenic | 10.0% |
| !!! | TAAATAAAGATTTGATTTAA+AGG | + | chr1_4:71186897-71186916 | None:intergenic | 10.0% |
| !!! | AAAGTTAAATAAATTTTTAC+CGG | + | chr1_4:71186175-71186194 | None:intergenic | 10.0% |
| !!! | TAAATAAAGATTTGATTTAA+AGG | + | chr1_4:71186897-71186916 | None:intergenic | 10.0% |
| !!! | AAGTTAAATAAATTTTTACC+GGG | + | chr1_4:71186174-71186193 | None:intergenic | 15.0% |
| !! | ACAATTTAATAAGAAAGAAA+GGG | + | chr1_4:71186471-71186490 | None:intergenic | 15.0% |
| !! | AACAATTTAATAAGAAAGAA+AGG | + | chr1_4:71186472-71186491 | None:intergenic | 15.0% |
| !! | TAGAGGAAAAATAAATAAAA+AGG | - | chr1_4:71186568-71186587 | Msa0182580:intron | 15.0% |
| !! | AGAGGAAAAATAAATAAAAA+GGG | - | chr1_4:71186569-71186588 | Msa0182580:intron | 15.0% |
| !!! | TATAATTTGATGATGATATA+TGG | - | chr1_4:71186622-71186641 | Msa0182580:CDS | 15.0% |
| !!! | ATAATTTGATGATGATATAT+GGG | - | chr1_4:71186623-71186642 | Msa0182580:CDS | 15.0% |
| !!! | TCATTATTTTATTTTTGGTT+GGG | + | chr1_4:71186956-71186975 | None:intergenic | 15.0% |
| !!! | ACTAGTCATTATTTTATTTT+TGG | + | chr1_4:71186961-71186980 | None:intergenic | 15.0% |
| !! | CTAATTTATTTGTATGATAA+AGG | + | chr1_4:71187313-71187332 | None:intergenic | 15.0% |
| !! | TCATACAAATAAATTAGAAT+CGG | - | chr1_4:71187316-71187335 | Msa0182580:intron | 15.0% |
| !!! | AAGTAAAAACATTTGATTTA+GGG | + | chr1_4:71187420-71187439 | None:intergenic | 15.0% |
| !!! | AAAGTAAAAACATTTGATTT+AGG | + | chr1_4:71187421-71187440 | None:intergenic | 15.0% |
| !! | AAAATCATAACAATAGTATT+AGG | - | chr1_4:71187474-71187493 | Msa0182580:intron | 15.0% |
| !!! | GAAATATATGAATTGATTTA+GGG | + | chr1_4:71187523-71187542 | None:intergenic | 15.0% |
| !!! | TGAAATATATGAATTGATTT+AGG | + | chr1_4:71187524-71187543 | None:intergenic | 15.0% |
| !!! | AAGTTAAATAAATTTTTACC+GGG | + | chr1_4:71186174-71186193 | None:intergenic | 15.0% |
| !! | ACAATTTAATAAGAAAGAAA+GGG | + | chr1_4:71186471-71186490 | None:intergenic | 15.0% |
| !! | AACAATTTAATAAGAAAGAA+AGG | + | chr1_4:71186472-71186491 | None:intergenic | 15.0% |
| !! | TAGAGGAAAAATAAATAAAA+AGG | - | chr1_4:71186568-71186587 | Msa0182580:intron | 15.0% |
| !! | AGAGGAAAAATAAATAAAAA+GGG | - | chr1_4:71186569-71186588 | Msa0182580:intron | 15.0% |
| !!! | TATAATTTGATGATGATATA+TGG | - | chr1_4:71186622-71186641 | Msa0182580:CDS | 15.0% |
| !!! | ATAATTTGATGATGATATAT+GGG | - | chr1_4:71186623-71186642 | Msa0182580:CDS | 15.0% |
| !!! | TCATTATTTTATTTTTGGTT+GGG | + | chr1_4:71186956-71186975 | None:intergenic | 15.0% |
| !!! | ACTAGTCATTATTTTATTTT+TGG | + | chr1_4:71186961-71186980 | None:intergenic | 15.0% |
| !! | CTAATTTATTTGTATGATAA+AGG | + | chr1_4:71187313-71187332 | None:intergenic | 15.0% |
| !! | TCATACAAATAAATTAGAAT+CGG | - | chr1_4:71187316-71187335 | Msa0182580:intron | 15.0% |
| !!! | AAGTAAAAACATTTGATTTA+GGG | + | chr1_4:71187420-71187439 | None:intergenic | 15.0% |
| !!! | AAAGTAAAAACATTTGATTT+AGG | + | chr1_4:71187421-71187440 | None:intergenic | 15.0% |
| !! | AAAATCATAACAATAGTATT+AGG | - | chr1_4:71187474-71187493 | Msa0182580:intron | 15.0% |
| !!! | GAAATATATGAATTGATTTA+GGG | + | chr1_4:71187523-71187542 | None:intergenic | 15.0% |
| !!! | TGAAATATATGAATTGATTT+AGG | + | chr1_4:71187524-71187543 | None:intergenic | 15.0% |
| !! | AAGATAAATATGAATGAGAA+AGG | + | chr1_4:71185983-71186002 | None:intergenic | 20.0% |
| !! | GTGATTATGGAATATAATAT+AGG | + | chr1_4:71186292-71186311 | None:intergenic | 20.0% |
| !! | AAAGTATAATAAGTCTTTCA+TGG | + | chr1_4:71186320-71186339 | None:intergenic | 20.0% |
| !! | CTTCAAATATATTGTCATAA+TGG | - | chr1_4:71186536-71186555 | Msa0182580:intron | 20.0% |
| !!! | ATATATTGTCATAATGGAAA+AGG | - | chr1_4:71186542-71186561 | Msa0182580:intron | 20.0% |
| !!! | GTCATTATTTTATTTTTGGT+TGG | + | chr1_4:71186957-71186976 | None:intergenic | 20.0% |
| !! | GTATTAATTAAAGGAAAAAG+TGG | + | chr1_4:71187257-71187276 | None:intergenic | 20.0% |
| !! | ATATGTGTAGATGAAATTAA+AGG | + | chr1_4:71187290-71187309 | None:intergenic | 20.0% |
| !! | GCTTGAAAATTAAAAGTAAT+TGG | + | chr1_4:71187454-71187473 | None:intergenic | 20.0% |
| !! | AAAGAAAATGGAACTATAAA+TGG | + | chr1_4:71187583-71187602 | None:intergenic | 20.0% |
| !! | AAGATAAATATGAATGAGAA+AGG | + | chr1_4:71185983-71186002 | None:intergenic | 20.0% |
| !! | GTGATTATGGAATATAATAT+AGG | + | chr1_4:71186292-71186311 | None:intergenic | 20.0% |
| !! | AAAGTATAATAAGTCTTTCA+TGG | + | chr1_4:71186320-71186339 | None:intergenic | 20.0% |
| !! | CTTCAAATATATTGTCATAA+TGG | - | chr1_4:71186536-71186555 | Msa0182580:intron | 20.0% |
| !!! | ATATATTGTCATAATGGAAA+AGG | - | chr1_4:71186542-71186561 | Msa0182580:intron | 20.0% |
| !!! | GTCATTATTTTATTTTTGGT+TGG | + | chr1_4:71186957-71186976 | None:intergenic | 20.0% |
| !! | GTATTAATTAAAGGAAAAAG+TGG | + | chr1_4:71187257-71187276 | None:intergenic | 20.0% |
| !! | ATATGTGTAGATGAAATTAA+AGG | + | chr1_4:71187290-71187309 | None:intergenic | 20.0% |
| !! | GCTTGAAAATTAAAAGTAAT+TGG | + | chr1_4:71187454-71187473 | None:intergenic | 20.0% |
| !! | AAAGAAAATGGAACTATAAA+TGG | + | chr1_4:71187583-71187602 | None:intergenic | 20.0% |
| !! | TATCTATTTGTTCCATTTTC+AGG | - | chr1_4:71186058-71186077 | Msa0182580:CDS | 25.0% |
| ! | GCAAATTGTTAAGATCTAAT+GGG | + | chr1_4:71186098-71186117 | None:intergenic | 25.0% |
| ! | ATGGAAAAAGATAAAAGAGA+AGG | + | chr1_4:71186497-71186516 | None:intergenic | 25.0% |
| ! | ATGATGATATATGGGAAATT+GGG | - | chr1_4:71186631-71186650 | Msa0182580:CDS | 25.0% |
| !! | AAATTGGGAATGTTGATTAA+GGG | - | chr1_4:71186646-71186665 | Msa0182580:CDS | 25.0% |
| !!! | GGATATTGTTGTTAATTTGT+TGG | - | chr1_4:71186701-71186720 | Msa0182580:intron | 25.0% |
| ! | GTACTACTAAAATTCTTTCT+TGG | - | chr1_4:71187040-71187059 | Msa0182580:CDS | 25.0% |
| !!! | TTTCTTGGTTTTGATTTGAA+AGG | - | chr1_4:71187055-71187074 | Msa0182580:CDS | 25.0% |
| ! | TGATGTGTATATATTTGTGT+TGG | - | chr1_4:71187103-71187122 | Msa0182580:intron | 25.0% |
| ! | GATGTGTATATATTTGTGTT+GGG | - | chr1_4:71187104-71187123 | Msa0182580:intron | 25.0% |
| ! | TATTTGTGTTGGGTTTAATT+TGG | - | chr1_4:71187114-71187133 | Msa0182580:intron | 25.0% |
| !! | AGGAGCAAAGTATTAATTAA+AGG | + | chr1_4:71187266-71187285 | None:intergenic | 25.0% |
| ! | GGCATCATGATATAAATTAA+TGG | - | chr1_4:71187495-71187514 | Msa0182580:intron | 25.0% |
| ! | TATTTCATGTATGTCCATTA+TGG | - | chr1_4:71187537-71187556 | Msa0182580:intron | 25.0% |
| ! | ACAACATCTGAAAAAGAAAA+TGG | + | chr1_4:71187595-71187614 | None:intergenic | 25.0% |
| ! | TATATTCCAGCAAATAACAT+GGG | - | chr1_4:71187639-71187658 | Msa0182580:intron | 25.0% |
| !! | TATCTATTTGTTCCATTTTC+AGG | - | chr1_4:71186058-71186077 | Msa0182580:CDS | 25.0% |
| ! | GCAAATTGTTAAGATCTAAT+GGG | + | chr1_4:71186098-71186117 | None:intergenic | 25.0% |
| ! | ATGGAAAAAGATAAAAGAGA+AGG | + | chr1_4:71186497-71186516 | None:intergenic | 25.0% |
| ! | ATGATGATATATGGGAAATT+GGG | - | chr1_4:71186631-71186650 | Msa0182580:CDS | 25.0% |
| !! | AAATTGGGAATGTTGATTAA+GGG | - | chr1_4:71186646-71186665 | Msa0182580:CDS | 25.0% |
| !!! | GGATATTGTTGTTAATTTGT+TGG | - | chr1_4:71186701-71186720 | Msa0182580:intron | 25.0% |
| ! | GTACTACTAAAATTCTTTCT+TGG | - | chr1_4:71187040-71187059 | Msa0182580:CDS | 25.0% |
| !!! | TTTCTTGGTTTTGATTTGAA+AGG | - | chr1_4:71187055-71187074 | Msa0182580:CDS | 25.0% |
| ! | TGATGTGTATATATTTGTGT+TGG | - | chr1_4:71187103-71187122 | Msa0182580:intron | 25.0% |
| ! | GATGTGTATATATTTGTGTT+GGG | - | chr1_4:71187104-71187123 | Msa0182580:intron | 25.0% |
| ! | TATTTGTGTTGGGTTTAATT+TGG | - | chr1_4:71187114-71187133 | Msa0182580:intron | 25.0% |
| !! | AGGAGCAAAGTATTAATTAA+AGG | + | chr1_4:71187266-71187285 | None:intergenic | 25.0% |
| ! | GGCATCATGATATAAATTAA+TGG | - | chr1_4:71187495-71187514 | Msa0182580:intron | 25.0% |
| ! | TATTTCATGTATGTCCATTA+TGG | - | chr1_4:71187537-71187556 | Msa0182580:intron | 25.0% |
| ! | ACAACATCTGAAAAAGAAAA+TGG | + | chr1_4:71187595-71187614 | None:intergenic | 25.0% |
| ! | TATATTCCAGCAAATAACAT+GGG | - | chr1_4:71187639-71187658 | Msa0182580:intron | 25.0% |
| ! | TGAAAGTCTCACAAATTTTG+TGG | - | chr1_4:71185841-71185860 | Msa0182580:CDS | 30.0% |
| ! | TATCTTCCCTTCTAAAAGAA+AGG | - | chr1_4:71185877-71185896 | Msa0182580:CDS | 30.0% |
| ! | ATCTTCCCTTCTAAAAGAAA+GGG | - | chr1_4:71185878-71185897 | Msa0182580:CDS | 30.0% |
| !! | AAACACCCTTTCTTTTAGAA+GGG | + | chr1_4:71185886-71185905 | None:intergenic | 30.0% |
| ! | TAAACACCCTTTCTTTTAGA+AGG | + | chr1_4:71185887-71185906 | None:intergenic | 30.0% |
| GGAACAAATAGATATAGTGA+AGG | + | chr1_4:71186052-71186071 | None:intergenic | 30.0% | |
| GGCAAATTGTTAAGATCTAA+TGG | + | chr1_4:71186099-71186118 | None:intergenic | 30.0% | |
| TTTCATGGTATGTGTGATTA+TGG | + | chr1_4:71186305-71186324 | None:intergenic | 30.0% | |
| AGACTTATTATACTTTCCAC+AGG | - | chr1_4:71186324-71186343 | Msa0182580:intron | 30.0% | |
| ATGGTCAAAAGAATATACCA+CGG | + | chr1_4:71186384-71186403 | None:intergenic | 30.0% | |
| ! | AATTATTGAGCACTGTTTCA+TGG | + | chr1_4:71186403-71186422 | None:intergenic | 30.0% |
| TTTAAAGAAGCTAGCAAGTA+TGG | + | chr1_4:71186516-71186535 | None:intergenic | 30.0% | |
| GATGATGATATATGGGAAAT+TGG | - | chr1_4:71186630-71186649 | Msa0182580:CDS | 30.0% | |
| ! | GAAATTGGGAATGTTGATTA+AGG | - | chr1_4:71186645-71186664 | Msa0182580:CDS | 30.0% |
| !! | ATTGTTGTTAATTTGTTGGC+AGG | - | chr1_4:71186705-71186724 | Msa0182580:intron | 30.0% |
| GTGTAGATGAAATTAAAGGA+AGG | + | chr1_4:71187286-71187305 | None:intergenic | 30.0% | |
| TACAAAACAATGAGCCATAA+TGG | + | chr1_4:71187554-71187573 | None:intergenic | 30.0% | |
| CTATATTCCAGCAAATAACA+TGG | - | chr1_4:71187638-71187657 | Msa0182580:intron | 30.0% | |
| AAATATCTTGGGAATCTCAT+AGG | + | chr1_4:71187678-71187697 | None:intergenic | 30.0% | |
| ATGAACCTGAGAAATATCTT+GGG | + | chr1_4:71187689-71187708 | None:intergenic | 30.0% | |
| TCCAATGAATGAATATCATG+TGG | - | chr1_4:71187815-71187834 | Msa0182580:intron | 30.0% | |
| CCAATGAATGAATATCATGT+GGG | - | chr1_4:71187816-71187835 | Msa0182580:intron | 30.0% | |
| ATCATCATCAAGATATGGAA+GGG | - | chr1_4:71187979-71187998 | Msa0182580:CDS | 30.0% | |
| ! | TGAAAGTCTCACAAATTTTG+TGG | - | chr1_4:71185841-71185860 | Msa0182580:CDS | 30.0% |
| ! | TATCTTCCCTTCTAAAAGAA+AGG | - | chr1_4:71185877-71185896 | Msa0182580:CDS | 30.0% |
| ! | ATCTTCCCTTCTAAAAGAAA+GGG | - | chr1_4:71185878-71185897 | Msa0182580:CDS | 30.0% |
| !! | AAACACCCTTTCTTTTAGAA+GGG | + | chr1_4:71185886-71185905 | None:intergenic | 30.0% |
| ! | TAAACACCCTTTCTTTTAGA+AGG | + | chr1_4:71185887-71185906 | None:intergenic | 30.0% |
| GGAACAAATAGATATAGTGA+AGG | + | chr1_4:71186052-71186071 | None:intergenic | 30.0% | |
| GGCAAATTGTTAAGATCTAA+TGG | + | chr1_4:71186099-71186118 | None:intergenic | 30.0% | |
| TTTCATGGTATGTGTGATTA+TGG | + | chr1_4:71186305-71186324 | None:intergenic | 30.0% | |
| AGACTTATTATACTTTCCAC+AGG | - | chr1_4:71186324-71186343 | Msa0182580:intron | 30.0% | |
| ATGGTCAAAAGAATATACCA+CGG | + | chr1_4:71186384-71186403 | None:intergenic | 30.0% | |
| ! | AATTATTGAGCACTGTTTCA+TGG | + | chr1_4:71186403-71186422 | None:intergenic | 30.0% |
| TTTAAAGAAGCTAGCAAGTA+TGG | + | chr1_4:71186516-71186535 | None:intergenic | 30.0% | |
| GATGATGATATATGGGAAAT+TGG | - | chr1_4:71186630-71186649 | Msa0182580:CDS | 30.0% | |
| ! | GAAATTGGGAATGTTGATTA+AGG | - | chr1_4:71186645-71186664 | Msa0182580:CDS | 30.0% |
| !! | ATTGTTGTTAATTTGTTGGC+AGG | - | chr1_4:71186705-71186724 | Msa0182580:intron | 30.0% |
| GTGTAGATGAAATTAAAGGA+AGG | + | chr1_4:71187286-71187305 | None:intergenic | 30.0% | |
| TACAAAACAATGAGCCATAA+TGG | + | chr1_4:71187554-71187573 | None:intergenic | 30.0% | |
| CTATATTCCAGCAAATAACA+TGG | - | chr1_4:71187638-71187657 | Msa0182580:intron | 30.0% | |
| AAATATCTTGGGAATCTCAT+AGG | + | chr1_4:71187678-71187697 | None:intergenic | 30.0% | |
| ATGAACCTGAGAAATATCTT+GGG | + | chr1_4:71187689-71187708 | None:intergenic | 30.0% | |
| TCCAATGAATGAATATCATG+TGG | - | chr1_4:71187815-71187834 | Msa0182580:intron | 30.0% | |
| CCAATGAATGAATATCATGT+GGG | - | chr1_4:71187816-71187835 | Msa0182580:intron | 30.0% | |
| ATCATCATCAAGATATGGAA+GGG | - | chr1_4:71187979-71187998 | Msa0182580:CDS | 30.0% | |
| ! | AGTTTGAGACTGCAATATAG+AGG | + | chr1_4:71185822-71185841 | None:intergenic | 35.0% |
| AGAAGGGAAGATAAAACTAG+AGG | + | chr1_4:71185870-71185889 | None:intergenic | 35.0% | |
| ! | TGAGAAAGGTGTAGTATAGT+GGG | + | chr1_4:71185969-71185988 | None:intergenic | 35.0% |
| ! | ATGAGAAAGGTGTAGTATAG+TGG | + | chr1_4:71185970-71185989 | None:intergenic | 35.0% |
| !! | TGATCTCTAGAGTATTCATC+AGG | + | chr1_4:71186120-71186139 | None:intergenic | 35.0% |
| ! | GATGAATACTCTAGAGATCA+TGG | - | chr1_4:71186120-71186139 | Msa0182580:CDS | 35.0% |
| !! | GTGTTCAATTTTGTTTCCTG+TGG | + | chr1_4:71186343-71186362 | None:intergenic | 35.0% |
| TGGTCAAAAGAATATACCAC+GGG | + | chr1_4:71186383-71186402 | None:intergenic | 35.0% | |
| ! | CATAATGGAAAAGGAGTTAG+AGG | - | chr1_4:71186551-71186570 | Msa0182580:intron | 35.0% |
| ! | TGTTGATTAAGGGAAAGTAG+TGG | - | chr1_4:71186656-71186675 | Msa0182580:CDS | 35.0% |
| GGTTGCAGGAAAAAGAAAAA+CGG | - | chr1_4:71186726-71186745 | Msa0182580:intron | 35.0% | |
| CTGAGATTTACAGAACTTGA+GGG | + | chr1_4:71186805-71186824 | None:intergenic | 35.0% | |
| ! | ATGAAAAGAATAGCTAGCCT+TGG | + | chr1_4:71186857-71186876 | None:intergenic | 35.0% |
| TAGAATCGGATAAGATGTTG+TGG | - | chr1_4:71187330-71187349 | Msa0182580:intron | 35.0% | |
| AGAATCGGATAAGATGTTGT+GGG | - | chr1_4:71187331-71187350 | Msa0182580:intron | 35.0% | |
| AACCCACCGTACTAAATTAA+TGG | - | chr1_4:71187392-71187411 | Msa0182580:intron | 35.0% | |
| CTCCATTAATTTAGTACGGT+GGG | + | chr1_4:71187397-71187416 | None:intergenic | 35.0% | |
| AGGGCTCCATTAATTTAGTA+CGG | + | chr1_4:71187401-71187420 | None:intergenic | 35.0% | |
| !! | ATATAGCTTGCTGTTGGTAT+TGG | + | chr1_4:71187624-71187643 | None:intergenic | 35.0% |
| AGATTCCCAAGATATTTCTC+AGG | - | chr1_4:71187681-71187700 | Msa0182580:CDS | 35.0% | |
| GATGAACCTGAGAAATATCT+TGG | + | chr1_4:71187690-71187709 | None:intergenic | 35.0% | |
| TATTCATTCATTGGATGCTG+AGG | + | chr1_4:71187810-71187829 | None:intergenic | 35.0% | |
| CCCACATGATATTCATTCAT+TGG | + | chr1_4:71187819-71187838 | None:intergenic | 35.0% | |
| AGTTCATGTTGTGATATTGC+TGG | + | chr1_4:71187866-71187885 | None:intergenic | 35.0% | |
| GGAATAAAACCTTGTCTAAC+CGG | + | chr1_4:71187939-71187958 | None:intergenic | 35.0% | |
| !!! | GTTAGACAAGGTTTTATTCC+AGG | - | chr1_4:71187939-71187958 | Msa0182580:CDS | 35.0% |
| GAAGGATCATCATCAAGATA+TGG | - | chr1_4:71187974-71187993 | Msa0182580:CDS | 35.0% | |
| GATCATCATCAAGATATGGA+AGG | - | chr1_4:71187978-71187997 | Msa0182580:CDS | 35.0% | |
| ATATGGAAGGGACATTGAAT+TGG | - | chr1_4:71187991-71188010 | Msa0182580:CDS | 35.0% | |
| TATGGAAGGGACATTGAATT+GGG | - | chr1_4:71187992-71188011 | Msa0182580:CDS | 35.0% | |
| TTGATCAATGCTGCTGAATT+AGG | + | chr1_4:71188068-71188087 | None:intergenic | 35.0% | |
| !! | ATTCAGCAGCATTGATCAAT+CGG | - | chr1_4:71188069-71188088 | Msa0182580:CDS | 35.0% |
| ! | TTGATCAATCGGTTTCAAGA+TGG | - | chr1_4:71188080-71188099 | Msa0182580:CDS | 35.0% |
| ! | AGTTTGAGACTGCAATATAG+AGG | + | chr1_4:71185822-71185841 | None:intergenic | 35.0% |
| AGAAGGGAAGATAAAACTAG+AGG | + | chr1_4:71185870-71185889 | None:intergenic | 35.0% | |
| ! | TGAGAAAGGTGTAGTATAGT+GGG | + | chr1_4:71185969-71185988 | None:intergenic | 35.0% |
| ! | ATGAGAAAGGTGTAGTATAG+TGG | + | chr1_4:71185970-71185989 | None:intergenic | 35.0% |
| !! | TGATCTCTAGAGTATTCATC+AGG | + | chr1_4:71186120-71186139 | None:intergenic | 35.0% |
| ! | GATGAATACTCTAGAGATCA+TGG | - | chr1_4:71186120-71186139 | Msa0182580:CDS | 35.0% |
| !! | GTGTTCAATTTTGTTTCCTG+TGG | + | chr1_4:71186343-71186362 | None:intergenic | 35.0% |
| TGGTCAAAAGAATATACCAC+GGG | + | chr1_4:71186383-71186402 | None:intergenic | 35.0% | |
| ! | CATAATGGAAAAGGAGTTAG+AGG | - | chr1_4:71186551-71186570 | Msa0182580:intron | 35.0% |
| ! | TGTTGATTAAGGGAAAGTAG+TGG | - | chr1_4:71186656-71186675 | Msa0182580:CDS | 35.0% |
| GGTTGCAGGAAAAAGAAAAA+CGG | - | chr1_4:71186726-71186745 | Msa0182580:intron | 35.0% | |
| CTGAGATTTACAGAACTTGA+GGG | + | chr1_4:71186805-71186824 | None:intergenic | 35.0% | |
| ! | ATGAAAAGAATAGCTAGCCT+TGG | + | chr1_4:71186857-71186876 | None:intergenic | 35.0% |
| TAGAATCGGATAAGATGTTG+TGG | - | chr1_4:71187330-71187349 | Msa0182580:intron | 35.0% | |
| AGAATCGGATAAGATGTTGT+GGG | - | chr1_4:71187331-71187350 | Msa0182580:intron | 35.0% | |
| AACCCACCGTACTAAATTAA+TGG | - | chr1_4:71187392-71187411 | Msa0182580:intron | 35.0% | |
| CTCCATTAATTTAGTACGGT+GGG | + | chr1_4:71187397-71187416 | None:intergenic | 35.0% | |
| AGGGCTCCATTAATTTAGTA+CGG | + | chr1_4:71187401-71187420 | None:intergenic | 35.0% | |
| !! | ATATAGCTTGCTGTTGGTAT+TGG | + | chr1_4:71187624-71187643 | None:intergenic | 35.0% |
| AGATTCCCAAGATATTTCTC+AGG | - | chr1_4:71187681-71187700 | Msa0182580:CDS | 35.0% | |
| GATGAACCTGAGAAATATCT+TGG | + | chr1_4:71187690-71187709 | None:intergenic | 35.0% | |
| TATTCATTCATTGGATGCTG+AGG | + | chr1_4:71187810-71187829 | None:intergenic | 35.0% | |
| CCCACATGATATTCATTCAT+TGG | + | chr1_4:71187819-71187838 | None:intergenic | 35.0% | |
| AGTTCATGTTGTGATATTGC+TGG | + | chr1_4:71187866-71187885 | None:intergenic | 35.0% | |
| GGAATAAAACCTTGTCTAAC+CGG | + | chr1_4:71187939-71187958 | None:intergenic | 35.0% | |
| !!! | GTTAGACAAGGTTTTATTCC+AGG | - | chr1_4:71187939-71187958 | Msa0182580:CDS | 35.0% |
| GAAGGATCATCATCAAGATA+TGG | - | chr1_4:71187974-71187993 | Msa0182580:CDS | 35.0% | |
| GATCATCATCAAGATATGGA+AGG | - | chr1_4:71187978-71187997 | Msa0182580:CDS | 35.0% | |
| ATATGGAAGGGACATTGAAT+TGG | - | chr1_4:71187991-71188010 | Msa0182580:CDS | 35.0% | |
| TATGGAAGGGACATTGAATT+GGG | - | chr1_4:71187992-71188011 | Msa0182580:CDS | 35.0% | |
| TTGATCAATGCTGCTGAATT+AGG | + | chr1_4:71188068-71188087 | None:intergenic | 35.0% | |
| !! | ATTCAGCAGCATTGATCAAT+CGG | - | chr1_4:71188069-71188088 | Msa0182580:CDS | 35.0% |
| ! | TTGATCAATCGGTTTCAAGA+TGG | - | chr1_4:71188080-71188099 | Msa0182580:CDS | 35.0% |
| ! | TATAGAGGCTAGTTGAGTGA+TGG | + | chr1_4:71185807-71185826 | None:intergenic | 40.0% |
| TTCTTTCTGTCTCTCTCTGT+CGG | - | chr1_4:71185923-71185942 | Msa0182580:CDS | 40.0% | |
| ! | AGAAAGGTGTAGTATAGTGG+GGG | + | chr1_4:71185967-71185986 | None:intergenic | 40.0% |
| ! | GAGAAAGGTGTAGTATAGTG+GGG | + | chr1_4:71185968-71185987 | None:intergenic | 40.0% |
| !! | AGATCTAATGGGTTTCCTTG+CGG | + | chr1_4:71186087-71186106 | None:intergenic | 40.0% |
| GGTCAAAAGAATATACCACG+GGG | + | chr1_4:71186382-71186401 | None:intergenic | 40.0% | |
| CTCGTCGAAGTTGCTTAAAT+AGG | - | chr1_4:71186680-71186699 | Msa0182580:intron | 40.0% | |
| !! | TTAATTTGTTGGCAGGTTGC+AGG | - | chr1_4:71186712-71186731 | Msa0182580:intron | 40.0% |
| TGCAGGAAAAAGAAAAACGG+CGG | - | chr1_4:71186729-71186748 | Msa0182580:intron | 40.0% | |
| AAGGATGGAAAAGATGAGTG+TGG | - | chr1_4:71186753-71186772 | Msa0182580:intron | 40.0% | |
| AGGATGGAAAAGATGAGTGT+GGG | - | chr1_4:71186754-71186773 | Msa0182580:intron | 40.0% | |
| CCTGAGATTTACAGAACTTG+AGG | + | chr1_4:71186806-71186825 | None:intergenic | 40.0% | |
| CCTCAAGTTCTGTAAATCTC+AGG | - | chr1_4:71186803-71186822 | Msa0182580:intron | 40.0% | |
| TTCTGTAAATCTCAGGCTCT+TGG | - | chr1_4:71186810-71186829 | Msa0182580:intron | 40.0% | |
| TCTGTAAATCTCAGGCTCTT+GGG | - | chr1_4:71186811-71186830 | Msa0182580:intron | 40.0% | |
| !! | AAAAGAATAGCTAGCCTTGG+CGG | + | chr1_4:71186854-71186873 | None:intergenic | 40.0% |
| TGACATGTGACAACGTTTCA+TGG | + | chr1_4:71186998-71187017 | None:intergenic | 40.0% | |
| GAAAGGTCTTTCTCTTGTGT+TGG | - | chr1_4:71187072-71187091 | Msa0182580:CDS | 40.0% | |
| !! | GGTTTAATTTGGTGCAGAGA+GGG | - | chr1_4:71187125-71187144 | Msa0182580:intron | 40.0% |
| GTGCAAGGTTATGATCGTTA+CGG | + | chr1_4:71187188-71187207 | None:intergenic | 40.0% | |
| CATTGGATACATACCCTACA+AGG | + | chr1_4:71187230-71187249 | None:intergenic | 40.0% | |
| AAGGAAAAAGTGGTGTGCAT+TGG | + | chr1_4:71187247-71187266 | None:intergenic | 40.0% | |
| GCTCCATTAATTTAGTACGG+TGG | + | chr1_4:71187398-71187417 | None:intergenic | 40.0% | |
| ! | TGATCTCCCATGTTATTTGC+TGG | + | chr1_4:71187648-71187667 | None:intergenic | 40.0% |
| GAGTACAGATATGGTTGAGA+TGG | + | chr1_4:71187747-71187766 | None:intergenic | 40.0% | |
| ! | GTAGGTGAAGAGTACAGATA+TGG | + | chr1_4:71187756-71187775 | None:intergenic | 40.0% |
| AATGTGTAGGGAAAGACACT+GGG | + | chr1_4:71187782-71187801 | None:intergenic | 40.0% | |
| AAATGTGTAGGGAAAGACAC+TGG | + | chr1_4:71187783-71187802 | None:intergenic | 40.0% | |
| GCTGAGGAATCAAATGTGTA+GGG | + | chr1_4:71187794-71187813 | None:intergenic | 40.0% | |
| TGCTGAGGAATCAAATGTGT+AGG | + | chr1_4:71187795-71187814 | None:intergenic | 40.0% | |
| TCATGTTGTGATATTGCTGG+TGG | + | chr1_4:71187863-71187882 | None:intergenic | 40.0% | |
| CACAACATGAACTATGTTGC+AGG | - | chr1_4:71187873-71187892 | Msa0182580:CDS | 40.0% | |
| !!! | GGTTTTATTCCAGGAAGTAG+TGG | - | chr1_4:71187948-71187967 | Msa0182580:CDS | 40.0% |
| TTTATTCCAGGAAGTAGTGG+TGG | - | chr1_4:71187951-71187970 | Msa0182580:CDS | 40.0% | |
| TTATTCCAGGAAGTAGTGGT+GGG | - | chr1_4:71187952-71187971 | Msa0182580:CDS | 40.0% | |
| ATGGAAGGGACATTGAATTG+GGG | - | chr1_4:71187993-71188012 | Msa0182580:CDS | 40.0% | |
| ! | TATAGAGGCTAGTTGAGTGA+TGG | + | chr1_4:71185807-71185826 | None:intergenic | 40.0% |
| TTCTTTCTGTCTCTCTCTGT+CGG | - | chr1_4:71185923-71185942 | Msa0182580:CDS | 40.0% | |
| ! | AGAAAGGTGTAGTATAGTGG+GGG | + | chr1_4:71185967-71185986 | None:intergenic | 40.0% |
| ! | GAGAAAGGTGTAGTATAGTG+GGG | + | chr1_4:71185968-71185987 | None:intergenic | 40.0% |
| !! | AGATCTAATGGGTTTCCTTG+CGG | + | chr1_4:71186087-71186106 | None:intergenic | 40.0% |
| GGTCAAAAGAATATACCACG+GGG | + | chr1_4:71186382-71186401 | None:intergenic | 40.0% | |
| CTCGTCGAAGTTGCTTAAAT+AGG | - | chr1_4:71186680-71186699 | Msa0182580:intron | 40.0% | |
| !! | TTAATTTGTTGGCAGGTTGC+AGG | - | chr1_4:71186712-71186731 | Msa0182580:intron | 40.0% |
| TGCAGGAAAAAGAAAAACGG+CGG | - | chr1_4:71186729-71186748 | Msa0182580:intron | 40.0% | |
| AAGGATGGAAAAGATGAGTG+TGG | - | chr1_4:71186753-71186772 | Msa0182580:intron | 40.0% | |
| AGGATGGAAAAGATGAGTGT+GGG | - | chr1_4:71186754-71186773 | Msa0182580:intron | 40.0% | |
| CCTGAGATTTACAGAACTTG+AGG | + | chr1_4:71186806-71186825 | None:intergenic | 40.0% | |
| CCTCAAGTTCTGTAAATCTC+AGG | - | chr1_4:71186803-71186822 | Msa0182580:intron | 40.0% | |
| TTCTGTAAATCTCAGGCTCT+TGG | - | chr1_4:71186810-71186829 | Msa0182580:intron | 40.0% | |
| TCTGTAAATCTCAGGCTCTT+GGG | - | chr1_4:71186811-71186830 | Msa0182580:intron | 40.0% | |
| !! | AAAAGAATAGCTAGCCTTGG+CGG | + | chr1_4:71186854-71186873 | None:intergenic | 40.0% |
| TGACATGTGACAACGTTTCA+TGG | + | chr1_4:71186998-71187017 | None:intergenic | 40.0% | |
| GAAAGGTCTTTCTCTTGTGT+TGG | - | chr1_4:71187072-71187091 | Msa0182580:CDS | 40.0% | |
| !! | GGTTTAATTTGGTGCAGAGA+GGG | - | chr1_4:71187125-71187144 | Msa0182580:intron | 40.0% |
| GTGCAAGGTTATGATCGTTA+CGG | + | chr1_4:71187188-71187207 | None:intergenic | 40.0% | |
| CATTGGATACATACCCTACA+AGG | + | chr1_4:71187230-71187249 | None:intergenic | 40.0% | |
| AAGGAAAAAGTGGTGTGCAT+TGG | + | chr1_4:71187247-71187266 | None:intergenic | 40.0% | |
| GCTCCATTAATTTAGTACGG+TGG | + | chr1_4:71187398-71187417 | None:intergenic | 40.0% | |
| ! | TGATCTCCCATGTTATTTGC+TGG | + | chr1_4:71187648-71187667 | None:intergenic | 40.0% |
| GAGTACAGATATGGTTGAGA+TGG | + | chr1_4:71187747-71187766 | None:intergenic | 40.0% | |
| ! | GTAGGTGAAGAGTACAGATA+TGG | + | chr1_4:71187756-71187775 | None:intergenic | 40.0% |
| AATGTGTAGGGAAAGACACT+GGG | + | chr1_4:71187782-71187801 | None:intergenic | 40.0% | |
| AAATGTGTAGGGAAAGACAC+TGG | + | chr1_4:71187783-71187802 | None:intergenic | 40.0% | |
| GCTGAGGAATCAAATGTGTA+GGG | + | chr1_4:71187794-71187813 | None:intergenic | 40.0% | |
| TGCTGAGGAATCAAATGTGT+AGG | + | chr1_4:71187795-71187814 | None:intergenic | 40.0% | |
| TCATGTTGTGATATTGCTGG+TGG | + | chr1_4:71187863-71187882 | None:intergenic | 40.0% | |
| CACAACATGAACTATGTTGC+AGG | - | chr1_4:71187873-71187892 | Msa0182580:CDS | 40.0% | |
| !!! | GGTTTTATTCCAGGAAGTAG+TGG | - | chr1_4:71187948-71187967 | Msa0182580:CDS | 40.0% |
| TTTATTCCAGGAAGTAGTGG+TGG | - | chr1_4:71187951-71187970 | Msa0182580:CDS | 40.0% | |
| TTATTCCAGGAAGTAGTGGT+GGG | - | chr1_4:71187952-71187971 | Msa0182580:CDS | 40.0% | |
| ATGGAAGGGACATTGAATTG+GGG | - | chr1_4:71187993-71188012 | Msa0182580:CDS | 40.0% | |
| GAAAGAGAGAGATTCGAGAG+AGG | - | chr1_4:71185733-71185752 | Msa0182580:CDS | 45.0% | |
| CTCTGTCGGTACAATCATGT+AGG | - | chr1_4:71185937-71185956 | Msa0182580:CDS | 45.0% | |
| CTTGAAGACACTGATCTACC+CGG | - | chr1_4:71186153-71186172 | Msa0182580:CDS | 45.0% | |
| ! | GTCATATTTTGTCATCCCCG+TGG | - | chr1_4:71186364-71186383 | Msa0182580:intron | 45.0% |
| GCAGGAAAAAGAAAAACGGC+GGG | - | chr1_4:71186730-71186749 | Msa0182580:intron | 45.0% | |
| GAAAAAGAAAAACGGCGGGA+AGG | - | chr1_4:71186734-71186753 | Msa0182580:intron | 45.0% | |
| TGGAAAAGATGAGTGTGGGA+AGG | - | chr1_4:71186758-71186777 | Msa0182580:intron | 45.0% | |
| CTGTAAATCTCAGGCTCTTG+GGG | - | chr1_4:71186812-71186831 | Msa0182580:intron | 45.0% | |
| TGTAAATCTCAGGCTCTTGG+GGG | - | chr1_4:71186813-71186832 | Msa0182580:intron | 45.0% | |
| !! | GGGTTTAATTTGGTGCAGAG+AGG | - | chr1_4:71187124-71187143 | Msa0182580:intron | 45.0% |
| ACATACCCTACAAGGTGAGA+GGG | + | chr1_4:71187222-71187241 | None:intergenic | 45.0% | |
| TACATACCCTACAAGGTGAG+AGG | + | chr1_4:71187223-71187242 | None:intergenic | 45.0% | |
| !! | TAGCTTGCTGTTGGTATTGG+TGG | + | chr1_4:71187621-71187640 | None:intergenic | 45.0% |
| !! | GCTGGAATATAGCTTGCTGT+TGG | + | chr1_4:71187630-71187649 | None:intergenic | 45.0% |
| AGATATGGTTGAGATGGCTG+TGG | + | chr1_4:71187741-71187760 | None:intergenic | 45.0% | |
| TGTTGTGATATTGCTGGTGG+TGG | + | chr1_4:71187860-71187879 | None:intergenic | 45.0% | |
| ATGAACTATGTTGCAGGTGC+AGG | - | chr1_4:71187879-71187898 | Msa0182580:CDS | 45.0% | |
| GAGTCGAGTTACACTTGCAT+AGG | - | chr1_4:71187909-71187928 | Msa0182580:CDS | 45.0% | |
| TTACACTTGCATAGGTGCAC+CGG | - | chr1_4:71187917-71187936 | Msa0182580:CDS | 45.0% | |
| AAGGGACATTGAATTGGGGA+AGG | - | chr1_4:71187997-71188016 | Msa0182580:CDS | 45.0% | |
| AATTGGGGAAGGAGCTATTC+AGG | - | chr1_4:71188008-71188027 | Msa0182580:CDS | 45.0% | |
| GAAAGAGAGAGATTCGAGAG+AGG | - | chr1_4:71185733-71185752 | Msa0182580:CDS | 45.0% | |
| CTCTGTCGGTACAATCATGT+AGG | - | chr1_4:71185937-71185956 | Msa0182580:CDS | 45.0% | |
| CTTGAAGACACTGATCTACC+CGG | - | chr1_4:71186153-71186172 | Msa0182580:CDS | 45.0% | |
| ! | GTCATATTTTGTCATCCCCG+TGG | - | chr1_4:71186364-71186383 | Msa0182580:intron | 45.0% |
| GCAGGAAAAAGAAAAACGGC+GGG | - | chr1_4:71186730-71186749 | Msa0182580:intron | 45.0% | |
| GAAAAAGAAAAACGGCGGGA+AGG | - | chr1_4:71186734-71186753 | Msa0182580:intron | 45.0% | |
| TGGAAAAGATGAGTGTGGGA+AGG | - | chr1_4:71186758-71186777 | Msa0182580:intron | 45.0% | |
| CTGTAAATCTCAGGCTCTTG+GGG | - | chr1_4:71186812-71186831 | Msa0182580:intron | 45.0% | |
| TGTAAATCTCAGGCTCTTGG+GGG | - | chr1_4:71186813-71186832 | Msa0182580:intron | 45.0% | |
| !! | GGGTTTAATTTGGTGCAGAG+AGG | - | chr1_4:71187124-71187143 | Msa0182580:intron | 45.0% |
| ACATACCCTACAAGGTGAGA+GGG | + | chr1_4:71187222-71187241 | None:intergenic | 45.0% | |
| TACATACCCTACAAGGTGAG+AGG | + | chr1_4:71187223-71187242 | None:intergenic | 45.0% | |
| !! | TAGCTTGCTGTTGGTATTGG+TGG | + | chr1_4:71187621-71187640 | None:intergenic | 45.0% |
| !! | GCTGGAATATAGCTTGCTGT+TGG | + | chr1_4:71187630-71187649 | None:intergenic | 45.0% |
| AGATATGGTTGAGATGGCTG+TGG | + | chr1_4:71187741-71187760 | None:intergenic | 45.0% | |
| TGTTGTGATATTGCTGGTGG+TGG | + | chr1_4:71187860-71187879 | None:intergenic | 45.0% | |
| ATGAACTATGTTGCAGGTGC+AGG | - | chr1_4:71187879-71187898 | Msa0182580:CDS | 45.0% | |
| GAGTCGAGTTACACTTGCAT+AGG | - | chr1_4:71187909-71187928 | Msa0182580:CDS | 45.0% | |
| TTACACTTGCATAGGTGCAC+CGG | - | chr1_4:71187917-71187936 | Msa0182580:CDS | 45.0% | |
| AAGGGACATTGAATTGGGGA+AGG | - | chr1_4:71187997-71188016 | Msa0182580:CDS | 45.0% | |
| AATTGGGGAAGGAGCTATTC+AGG | - | chr1_4:71188008-71188027 | Msa0182580:CDS | 45.0% | |
| AGAGAGAGATTCGAGAGAGG+AGG | - | chr1_4:71185736-71185755 | Msa0182580:CDS | 50.0% | |
| !! | TCCATTTTCAGGAGACCGCA+AGG | - | chr1_4:71186069-71186088 | Msa0182580:CDS | 50.0% |
| TCCTTGCGGTCTCCTGAAAA+TGG | + | chr1_4:71186073-71186092 | None:intergenic | 50.0% | |
| CGGGTAGATCAGTGTCTTCA+AGG | + | chr1_4:71186155-71186174 | None:intergenic | 50.0% | |
| AAGAAAAACGGCGGGAAGGA+TGG | - | chr1_4:71186738-71186757 | Msa0182580:intron | 50.0% | |
| ! | TGAGATGCGTGGGAGTGTAT+GGG | + | chr1_4:71187363-71187382 | None:intergenic | 50.0% |
| TAAACCGCTGTGAGATGCGT+GGG | + | chr1_4:71187373-71187392 | None:intergenic | 50.0% | |
| TTAAACCGCTGTGAGATGCG+TGG | + | chr1_4:71187374-71187393 | None:intergenic | 50.0% | |
| !! | CTTGCTGTTGGTATTGGTGG+TGG | + | chr1_4:71187618-71187637 | None:intergenic | 50.0% |
| TATGGTTGAGATGGCTGTGG+TGG | + | chr1_4:71187738-71187757 | None:intergenic | 50.0% | |
| AACTATGTTGCAGGTGCAGG+TGG | - | chr1_4:71187882-71187901 | Msa0182580:CDS | 50.0% | |
| !! | ATAGGTGCACCGGTTAGACA+AGG | - | chr1_4:71187927-71187946 | Msa0182580:CDS | 50.0% |
| AGAGAGAGATTCGAGAGAGG+AGG | - | chr1_4:71185736-71185755 | Msa0182580:CDS | 50.0% | |
| !! | TCCATTTTCAGGAGACCGCA+AGG | - | chr1_4:71186069-71186088 | Msa0182580:CDS | 50.0% |
| TCCTTGCGGTCTCCTGAAAA+TGG | + | chr1_4:71186073-71186092 | None:intergenic | 50.0% | |
| CGGGTAGATCAGTGTCTTCA+AGG | + | chr1_4:71186155-71186174 | None:intergenic | 50.0% | |
| AAGAAAAACGGCGGGAAGGA+TGG | - | chr1_4:71186738-71186757 | Msa0182580:intron | 50.0% | |
| ! | TGAGATGCGTGGGAGTGTAT+GGG | + | chr1_4:71187363-71187382 | None:intergenic | 50.0% |
| TAAACCGCTGTGAGATGCGT+GGG | + | chr1_4:71187373-71187392 | None:intergenic | 50.0% | |
| TTAAACCGCTGTGAGATGCG+TGG | + | chr1_4:71187374-71187393 | None:intergenic | 50.0% | |
| !! | CTTGCTGTTGGTATTGGTGG+TGG | + | chr1_4:71187618-71187637 | None:intergenic | 50.0% |
| TATGGTTGAGATGGCTGTGG+TGG | + | chr1_4:71187738-71187757 | None:intergenic | 50.0% | |
| AACTATGTTGCAGGTGCAGG+TGG | - | chr1_4:71187882-71187901 | Msa0182580:CDS | 50.0% | |
| !! | ATAGGTGCACCGGTTAGACA+AGG | - | chr1_4:71187927-71187946 | Msa0182580:CDS | 50.0% |
| GAGAGATTCGAGAGAGGAGG+TGG | - | chr1_4:71185739-71185758 | Msa0182580:CDS | 55.0% | |
| !! | ATAGCTAGCCTTGGCGGTGA+CGG | + | chr1_4:71186848-71186867 | None:intergenic | 55.0% |
| ! | GGAAGACTAGCTGACGTGCA+TGG | + | chr1_4:71187167-71187186 | None:intergenic | 55.0% |
| CAGCTCCCTCTCACCTTGTA+GGG | - | chr1_4:71187214-71187233 | Msa0182580:intron | 55.0% | |
| ! | GTGAGATGCGTGGGAGTGTA+TGG | + | chr1_4:71187364-71187383 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTGGTGGAATGT+GGG | + | chr1_4:71187718-71187737 | None:intergenic | 55.0% |
| TATGTTGCAGGTGCAGGTGG+TGG | - | chr1_4:71187885-71187904 | Msa0182580:CDS | 55.0% | |
| ! | TCCAGGAAGTAGTGGTGGGA+AGG | - | chr1_4:71187956-71187975 | Msa0182580:CDS | 55.0% |
| TCCTTCCCACCACTACTTCC+TGG | + | chr1_4:71187960-71187979 | None:intergenic | 55.0% | |
| TGGGGAAGGAGCTATTCAGG+AGG | - | chr1_4:71188011-71188030 | Msa0182580:CDS | 55.0% | |
| GGAAGGAGCTATTCAGGAGG+AGG | - | chr1_4:71188014-71188033 | Msa0182580:CDS | 55.0% | |
| GAGAGATTCGAGAGAGGAGG+TGG | - | chr1_4:71185739-71185758 | Msa0182580:CDS | 55.0% | |
| !! | ATAGCTAGCCTTGGCGGTGA+CGG | + | chr1_4:71186848-71186867 | None:intergenic | 55.0% |
| ! | GGAAGACTAGCTGACGTGCA+TGG | + | chr1_4:71187167-71187186 | None:intergenic | 55.0% |
| CAGCTCCCTCTCACCTTGTA+GGG | - | chr1_4:71187214-71187233 | Msa0182580:intron | 55.0% | |
| ! | GTGAGATGCGTGGGAGTGTA+TGG | + | chr1_4:71187364-71187383 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTGGTGGAATGT+GGG | + | chr1_4:71187718-71187737 | None:intergenic | 55.0% |
| TATGTTGCAGGTGCAGGTGG+TGG | - | chr1_4:71187885-71187904 | Msa0182580:CDS | 55.0% | |
| ! | TCCAGGAAGTAGTGGTGGGA+AGG | - | chr1_4:71187956-71187975 | Msa0182580:CDS | 55.0% |
| TCCTTCCCACCACTACTTCC+TGG | + | chr1_4:71187960-71187979 | None:intergenic | 55.0% | |
| TGGGGAAGGAGCTATTCAGG+AGG | - | chr1_4:71188011-71188030 | Msa0182580:CDS | 55.0% | |
| GGAAGGAGCTATTCAGGAGG+AGG | - | chr1_4:71188014-71188033 | Msa0182580:CDS | 55.0% | |
| TTCGAGAGAGGAGGTGGCAG+AGG | - | chr1_4:71185745-71185764 | Msa0182580:CDS | 60.0% | |
| CACATGAACCGTCACCGCCA+AGG | - | chr1_4:71186837-71186856 | Msa0182580:intron | 60.0% | |
| AGGGAGCTGGTTGTGGTGCA+AGG | + | chr1_4:71187203-71187222 | None:intergenic | 60.0% | |
| AGGTGAGAGGGAGCTGGTTG+TGG | + | chr1_4:71187210-71187229 | None:intergenic | 60.0% | |
| CCTACAAGGTGAGAGGGAGC+TGG | + | chr1_4:71187216-71187235 | None:intergenic | 60.0% | |
| CCAGCTCCCTCTCACCTTGT+AGG | - | chr1_4:71187213-71187232 | Msa0182580:intron | 60.0% | |
| CACTCCCACGCATCTCACAG+CGG | - | chr1_4:71187366-71187385 | Msa0182580:intron | 60.0% | |
| !! | GTGGTGGTGGTGGTGGAATG+TGG | + | chr1_4:71187719-71187738 | None:intergenic | 60.0% |
| !! | TGAGATGGCTGTGGTGGTGG+TGG | + | chr1_4:71187732-71187751 | None:intergenic | 60.0% |
| GGTTGAGATGGCTGTGGTGG+TGG | + | chr1_4:71187735-71187754 | None:intergenic | 60.0% | |
| GGGAAAGACACTGGGCGTGT+AGG | + | chr1_4:71187774-71187793 | None:intergenic | 60.0% | |
| TTCGAGAGAGGAGGTGGCAG+AGG | - | chr1_4:71185745-71185764 | Msa0182580:CDS | 60.0% | |
| CACATGAACCGTCACCGCCA+AGG | - | chr1_4:71186837-71186856 | Msa0182580:intron | 60.0% | |
| AGGGAGCTGGTTGTGGTGCA+AGG | + | chr1_4:71187203-71187222 | None:intergenic | 60.0% | |
| AGGTGAGAGGGAGCTGGTTG+TGG | + | chr1_4:71187210-71187229 | None:intergenic | 60.0% | |
| CCTACAAGGTGAGAGGGAGC+TGG | + | chr1_4:71187216-71187235 | None:intergenic | 60.0% | |
| CCAGCTCCCTCTCACCTTGT+AGG | - | chr1_4:71187213-71187232 | Msa0182580:intron | 60.0% | |
| CACTCCCACGCATCTCACAG+CGG | - | chr1_4:71187366-71187385 | Msa0182580:intron | 60.0% | |
| !! | GTGGTGGTGGTGGTGGAATG+TGG | + | chr1_4:71187719-71187738 | None:intergenic | 60.0% |
| !! | TGAGATGGCTGTGGTGGTGG+TGG | + | chr1_4:71187732-71187751 | None:intergenic | 60.0% |
| GGTTGAGATGGCTGTGGTGG+TGG | + | chr1_4:71187735-71187754 | None:intergenic | 60.0% | |
| GGGAAAGACACTGGGCGTGT+AGG | + | chr1_4:71187774-71187793 | None:intergenic | 60.0% | |
| !! | GATGGCTGTGGTGGTGGTGG+TGG | + | chr1_4:71187729-71187748 | None:intergenic | 65.0% |
| !! | GATGGCTGTGGTGGTGGTGG+TGG | + | chr1_4:71187729-71187748 | None:intergenic | 65.0% |
| !! | GGCTGTGGTGGTGGTGGTGG+TGG | + | chr1_4:71187726-71187745 | None:intergenic | 70.0% |
| !! | GGCTGTGGTGGTGGTGGTGG+TGG | + | chr1_4:71187726-71187745 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 71185719 | 71188106 | 71185719 | ID=Msa0182580;Name=Msa0182580 |
| chr1_4 | mRNA | 71185719 | 71188106 | 71185719 | ID=Msa0182580-mRNA-1;Parent=Msa0182580;Name=Msa0182580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.25|0|1|0.5|0.4|5|0|348 |
| chr1_4 | exon | 71187871 | 71188106 | 71187871 | ID=Msa0182580-mRNA-1:exon:23892;Parent=Msa0182580-mRNA-1 |
| chr1_4 | exon | 71187651 | 71187745 | 71187651 | ID=Msa0182580-mRNA-1:exon:23891;Parent=Msa0182580-mRNA-1 |
| chr1_4 | exon | 71186979 | 71187098 | 71186979 | ID=Msa0182580-mRNA-1:exon:23890;Parent=Msa0182580-mRNA-1 |
| chr1_4 | exon | 71186590 | 71186683 | 71186590 | ID=Msa0182580-mRNA-1:exon:23889;Parent=Msa0182580-mRNA-1 |
| chr1_4 | exon | 71185719 | 71186217 | 71185719 | ID=Msa0182580-mRNA-1:exon:23888;Parent=Msa0182580-mRNA-1 |
| chr1_4 | CDS | 71187871 | 71188106 | 71187871 | ID=Msa0182580-mRNA-1:cds;Parent=Msa0182580-mRNA-1 |
| chr1_4 | CDS | 71187651 | 71187745 | 71187651 | ID=Msa0182580-mRNA-1:cds;Parent=Msa0182580-mRNA-1 |
| chr1_4 | CDS | 71186979 | 71187098 | 71186979 | ID=Msa0182580-mRNA-1:cds;Parent=Msa0182580-mRNA-1 |
| chr1_4 | CDS | 71186590 | 71186683 | 71186590 | ID=Msa0182580-mRNA-1:cds;Parent=Msa0182580-mRNA-1 |
| chr1_4 | CDS | 71185719 | 71186217 | 71185719 | ID=Msa0182580-mRNA-1:cds;Parent=Msa0182580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
