AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138580 MtrunA17_Chr1g0155001 93.229 384 20 2 1 384 1 378 0.0 681
Msa0138580 MtrunA17_Chr3g0144531 63.579 475 145 5 8 478 8 458 0.0 612
Msa0138580 MtrunA17_Chr4g0034901 63.539 469 149 5 10 477 15 462 0.0 606
Msa0138580 MtrunA17_Chr7g0223961 40.798 451 238 8 24 472 23 446 2.19e-124 370
Msa0138580 MtrunA17_Chr4g0043511 42.484 459 239 10 24 474 62 503 9.99e-119 358
Msa0138580 MtrunA17_Chr6g0487261 37.370 479 268 7 4 478 10 460 5.90e-112 340
Msa0138580 MtrunA17_Chr8g0389741 37.281 456 258 5 20 474 24 452 1.02e-109 334
Msa0138580 MtrunA17_Chr1g0177171 37.849 465 269 8 24 477 38 493 7.75e-107 326
Msa0138580 MtrunA17_Chr1g0146831 46.866 335 170 4 9 341 16 344 3.61e-103 313
Msa0138580 MtrunA17_Chr1g0189111 46.894 322 168 3 24 345 31 349 1.65e-100 308
Msa0138580 MtrunA17_Chr5g0439251 36.842 456 267 7 24 473 25 465 5.34e-100 308
Msa0138580 MtrunA17_Chr3g0110371 35.833 480 268 6 4 476 1 447 3.30e-97 301
Msa0138580 MtrunA17_Chr4g0043851 45.963 322 172 2 24 345 32 351 1.59e-96 296
Msa0138580 MtrunA17_Chr4g0026321 43.195 338 190 2 24 361 29 364 1.48e-95 293
Msa0138580 MtrunA17_Chr2g0321511 43.064 346 182 5 9 347 11 348 1.76e-95 293
Msa0138580 MtrunA17_Chr5g0434591 36.534 479 265 6 4 476 1 446 1.85e-95 297
Msa0138580 MtrunA17_Chr8g0339191 36.383 481 268 12 4 474 6 458 3.99e-94 293
Msa0138580 MtrunA17_Chr4g0003281 42.249 329 189 1 25 353 41 368 3.13e-92 285
Msa0138580 MtrunA17_Chr3g0121271 34.656 479 277 7 1 476 3 448 7.31e-92 288
Msa0138580 MtrunA17_Chr7g0234821 35.449 457 263 9 25 474 27 458 6.79e-91 284
Msa0138580 MtrunA17_Chr4g0046311 33.547 468 281 9 8 468 7 451 8.14e-91 284
Msa0138580 MtrunA17_Chr2g0285901 43.491 338 185 5 9 344 8 341 2.50e-89 278
Msa0138580 MtrunA17_Chr1g0161011 34.238 479 277 5 4 476 1 447 1.66e-88 279
Msa0138580 MtrunA17_Chr4g0075031 34.716 458 264 5 22 476 43 468 4.87e-87 276
Msa0138580 MtrunA17_Chr8g0378621 33.542 480 283 5 1 476 3 450 8.41e-86 272
Msa0138580 MtrunA17_Chr3g0119541 41.888 339 188 5 24 356 26 361 9.00e-84 263
Msa0138580 MtrunA17_Chr4g0064021 39.062 320 194 1 25 344 27 345 5.49e-81 256
Msa0138580 MtrunA17_Chr1g0154991 100.000 108 0 0 372 479 1 108 2.79e-74 229
Msa0138580 MtrunA17_Chr7g0250301 38.486 317 185 6 24 340 8 314 3.98e-66 215
Msa0138580 MtrunA17_Chr4g0039021 41.034 290 161 5 44 333 1 280 2.76e-65 212
Msa0138580 MtrunA17_Chr4g0038981 37.092 337 194 9 4 340 6 324 9.05e-64 209
Msa0138580 MtrunA17_Chr4g0039011 37.267 322 188 7 24 345 42 349 3.68e-63 209
Msa0138580 MtrunA17_Chr4g0038971 35.799 338 199 8 4 341 6 325 1.73e-61 204
Msa0138580 MtrunA17_Chr4g0038961 36.795 337 195 10 4 340 6 324 2.25e-60 201
Msa0138580 MtrunA17_Chr2g0294601 35.465 344 211 8 8 349 42 376 4.37e-60 202
Msa0138580 MtrunA17_Chr4g0039071 37.500 320 192 5 24 343 25 336 6.78e-60 201
Msa0138580 MtrunA17_Chr4g0038941 36.170 329 192 8 13 341 44 354 3.12e-58 196
Msa0138580 MtrunA17_Chr1g0174261 38.276 290 169 6 53 341 1 281 1.27e-55 189
Msa0138580 MtrunA17_Chr4g0062771 29.916 478 284 17 9 472 14 454 2.55e-55 192
Msa0138580 MtrunA17_Chr3g0129341 29.677 465 282 19 18 474 28 455 4.02e-55 191
Msa0138580 MtrunA17_Chr2g0294591 33.903 351 219 9 16 363 22 362 4.22e-55 188
Msa0138580 MtrunA17_Chr4g0069801 29.350 477 288 16 3 468 5 443 6.48e-55 191
Msa0138580 MtrunA17_Chr2g0290821 29.487 468 282 16 20 477 24 453 4.40e-51 180
Msa0138580 MtrunA17_Chr1g0148391 29.565 460 278 15 24 474 26 448 8.61e-51 179
Msa0138580 MtrunA17_Chr7g0253091 29.935 461 273 17 24 472 26 448 1.73e-50 179
Msa0138580 MtrunA17_Chr7g0250321 36.426 291 174 6 3 291 5 286 2.15e-50 173
Msa0138580 MtrunA17_Chr2g0306311 27.634 503 294 15 5 472 12 479 2.17e-50 179
Msa0138580 MtrunA17_Chr8g0383311 27.564 468 293 14 22 477 41 474 2.68e-50 179
Msa0138580 MtrunA17_Chr3g0138741 28.992 476 292 15 8 474 16 454 3.70e-50 178
Msa0138580 MtrunA17_Chr6g0461601 29.310 464 275 17 24 472 26 451 2.17e-48 173
Msa0138580 MtrunA17_Chr5g0436361 35.786 299 183 6 45 341 58 349 3.94e-45 162
Msa0138580 MtrunA17_Chr4g0076581 27.812 489 302 15 3 477 8 459 2.02e-43 160
Msa0138580 MtrunA17_Chr3g0105981 28.475 446 277 14 16 456 19 427 1.48e-39 148
Msa0138580 MtrunA17_Chr8g0381081 44.898 98 53 1 379 475 45 142 4.32e-24 99.0
Msa0138580 MtrunA17_Chr8g0378381 50.000 84 42 0 391 474 32 115 9.38e-23 93.2
Msa0138580 MtrunA17_Chr8g0378361 48.235 85 44 0 390 474 29 113 1.45e-22 95.1
Msa0138580 MtrunA17_Chr8g0378401 48.235 85 44 0 391 475 32 116 3.21e-21 89.0
Msa0138580 MtrunA17_Chr3g0096451 39.535 129 68 5 352 474 71 195 4.08e-21 92.8
Msa0138580 MtrunA17_Chr5g0443331 42.373 118 49 4 373 474 77 191 3.74e-20 90.1
Msa0138580 MtrunA17_Chr8g0378371 46.429 84 42 1 391 474 33 113 6.69e-20 85.1
Msa0138580 MtrunA17_Chr2g0294581 29.187 209 128 6 24 222 76 274 9.59e-20 89.4
Msa0138580 MtrunA17_Chr3g0120401 45.238 84 46 0 391 474 157 240 1.17e-19 88.2
Msa0138580 MtrunA17_Chr4g0061401 44.681 94 51 1 381 474 14 106 3.65e-19 86.3
Msa0138580 MtrunA17_Chr7g0271411 41.259 143 58 7 354 474 105 243 7.18e-19 87.0
Msa0138580 MtrunA17_Chr2g0304061 45.882 85 45 1 391 475 158 241 1.09e-18 87.0
Msa0138580 MtrunA17_Chr1g0193131 50.633 79 38 1 390 468 419 496 1.85e-18 88.6
Msa0138580 MtrunA17_Chr5g0419121 44.681 94 50 1 383 474 14 107 7.64e-18 83.2
Msa0138580 MtrunA17_Chr1g0213651 42.857 84 48 0 391 474 276 359 9.16e-18 84.7
Msa0138580 MtrunA17_Chr2g0313891 40.449 89 52 1 386 474 25 112 8.78e-17 76.3
Msa0138580 MtrunA17_Chr4g0018771 35.345 116 68 3 248 361 86 196 1.38e-16 79.0
Msa0138580 MtrunA17_Chr4g0018861 31.973 147 92 4 218 361 53 194 3.99e-16 77.4
Msa0138580 MtrunA17_Chr5g0447651 43.529 85 47 1 391 474 30 114 7.99e-16 73.6
Msa0138580 MtrunA17_Chr8g0380231 55.072 69 25 3 403 468 29 94 1.06e-15 72.8
Msa0138580 MtrunA17_Chr4g0040911 43.182 88 49 1 391 477 37 124 2.92e-15 73.9
Msa0138580 MtrunA17_Chr4g0043151 42.222 90 51 1 386 474 16 105 4.42e-15 73.9
Msa0138580 MtrunA17_Chr5g0401301 43.023 86 47 2 391 474 329 414 1.96e-14 75.1
Msa0138580 MtrunA17_Chr4g0076141 37.037 81 50 1 389 468 11 91 7.26e-13 64.7
Msa0138580 MtrunA17_Chr4g0076131 33.333 87 57 1 389 474 26 112 9.90e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138580 AT4G34480.1 63.889 468 139 4 8 474 9 447 0.0 598
Msa0138580 AT2G16230.1 63.053 452 141 3 23 474 24 449 0.0 584
Msa0138580 AT5G42720.1 59.251 427 147 8 1 411 1 416 2.41e-174 497
Msa0138580 AT4G34480.2 69.565 345 103 2 8 351 9 352 4.48e-171 485
Msa0138580 AT4G34480.3 61.918 365 110 3 110 474 1 336 3.10e-156 449
Msa0138580 AT5G24318.1 45.415 458 219 8 20 474 26 455 5.58e-138 405
Msa0138580 AT5G24318.2 45.374 454 217 8 20 470 26 451 7.48e-136 399
Msa0138580 AT2G05790.1 37.797 463 263 9 24 477 25 471 4.54e-106 324
Msa0138580 AT5G55180.1 37.118 458 263 5 23 478 26 460 5.59e-106 323
Msa0138580 AT3G55430.1 37.281 456 246 13 24 474 29 449 6.86e-106 323
Msa0138580 AT5G24318.4 47.416 329 165 4 20 346 26 348 5.80e-105 318
Msa0138580 AT4G29360.1 38.116 467 282 5 9 474 15 475 1.78e-104 322
Msa0138580 AT4G26830.1 35.729 473 276 6 8 478 9 455 3.16e-104 318
Msa0138580 AT4G26830.2 36.245 458 264 6 23 478 28 459 8.72e-104 318
Msa0138580 AT5G55180.2 37.500 448 255 5 23 468 26 450 1.15e-103 317
Msa0138580 AT4G29360.2 37.895 475 282 6 9 474 15 485 3.11e-103 319
Msa0138580 AT5G56590.1 36.166 459 264 5 24 478 26 459 2.61e-101 313
Msa0138580 AT2G39640.1 34.937 478 267 7 1 472 1 440 6.52e-101 313
Msa0138580 AT2G39640.1 42.169 83 48 0 391 473 460 542 1.80e-18 88.6
Msa0138580 AT2G01630.1 37.174 460 252 5 21 476 20 446 1.25e-99 308
Msa0138580 AT1G30080.2 47.812 320 165 2 24 343 36 353 1.52e-99 304
Msa0138580 AT1G32860.1 48.148 324 164 3 24 345 29 350 1.93e-99 305
Msa0138580 AT1G30080.1 47.812 320 165 2 24 343 36 353 3.89e-99 304
Msa0138580 AT5G24318.3 45.190 343 159 6 134 474 1 316 4.10e-99 301
Msa0138580 AT2G01630.3 37.389 452 246 5 21 468 20 438 1.08e-97 301
Msa0138580 AT1G11820.2 35.730 459 260 4 21 476 41 467 1.62e-95 298
Msa0138580 AT4G18340.2 44.571 350 190 3 4 351 12 359 2.63e-94 291
Msa0138580 AT4G18340.1 44.571 350 190 3 4 351 12 359 4.60e-94 290
Msa0138580 AT2G27500.2 42.368 321 184 1 24 344 29 348 1.02e-92 286
Msa0138580 AT2G27500.1 42.236 322 185 1 24 345 29 349 2.90e-92 286
Msa0138580 AT1G66250.1 35.853 463 259 6 18 476 26 454 3.08e-92 289
Msa0138580 AT1G11820.3 35.477 451 256 4 21 468 41 459 6.09e-92 288
Msa0138580 AT3G07320.1 35.088 456 264 9 25 474 26 455 1.29e-87 276
Msa0138580 AT3G13560.4 35.667 457 258 4 23 476 25 448 3.06e-87 276
Msa0138580 AT3G13560.1 35.667 457 258 4 23 476 25 448 3.06e-87 276
Msa0138580 AT3G13560.2 35.667 457 258 4 23 476 25 448 3.06e-87 276
Msa0138580 AT3G13560.5 35.667 457 258 4 23 476 25 448 3.06e-87 276
Msa0138580 AT3G13560.3 35.667 457 258 4 23 476 25 448 3.06e-87 276
Msa0138580 AT5G42100.2 43.519 324 178 4 24 344 27 348 2.18e-86 271
Msa0138580 AT5G42100.1 43.519 324 178 4 24 344 27 348 3.36e-86 271
Msa0138580 AT4G14080.1 33.260 457 274 9 24 474 42 473 2.91e-85 270
Msa0138580 AT3G23770.1 33.624 458 274 9 24 474 37 471 3.34e-85 270
Msa0138580 AT3G15800.1 42.121 330 189 2 25 353 44 372 3.38e-85 268
Msa0138580 AT2G26600.1 38.720 328 200 1 25 352 35 361 3.78e-83 262
Msa0138580 AT2G01630.2 37.280 397 213 4 21 414 20 383 1.80e-80 255
Msa0138580 AT3G46570.1 41.880 351 190 10 2 346 4 346 5.07e-77 245
Msa0138580 AT2G27500.3 43.015 272 154 1 74 345 1 271 6.24e-77 243
Msa0138580 AT1G11820.1 38.509 322 195 2 21 340 41 361 3.25e-73 236
Msa0138580 AT3G61810.1 39.763 337 185 7 16 345 47 372 2.06e-71 231
Msa0138580 AT2G26600.2 39.925 268 160 1 85 352 1 267 2.14e-66 216
Msa0138580 AT3G57270.1 39.498 319 183 6 24 341 27 336 4.02e-65 214
Msa0138580 AT4G16260.1 39.806 309 176 6 24 332 24 322 1.15e-63 210
Msa0138580 AT4G16260.2 39.404 302 173 6 31 332 2 293 6.79e-61 202
Msa0138580 AT1G77780.1 38.757 338 188 10 10 341 7 331 1.09e-59 200
Msa0138580 AT3G57260.1 36.875 320 186 8 24 342 32 336 2.07e-59 199
Msa0138580 AT3G57260.2 36.875 320 186 8 24 342 48 352 2.56e-59 199
Msa0138580 AT5G20870.1 29.448 489 290 16 3 474 9 459 3.17e-58 200
Msa0138580 AT5G20390.1 36.991 319 189 8 24 340 33 341 2.95e-57 193
Msa0138580 AT4G31140.1 29.769 477 286 16 8 474 11 448 3.00e-56 194
Msa0138580 AT5G20340.1 36.875 320 190 8 24 341 43 352 3.27e-55 188
Msa0138580 AT5G20330.1 36.760 321 187 8 24 340 34 342 1.01e-52 181
Msa0138580 AT3G24330.1 30.217 460 274 16 24 472 39 462 1.65e-52 185
Msa0138580 AT1G33220.1 35.410 305 187 6 24 327 34 329 5.03e-50 174
Msa0138580 AT1G77790.1 35.443 316 193 7 28 341 34 340 1.13e-49 173
Msa0138580 AT5G64790.1 27.489 462 286 15 24 474 28 451 2.77e-49 176
Msa0138580 AT3G57240.1 35.897 312 179 11 24 332 35 328 3.49e-49 172
Msa0138580 AT5G58090.1 27.826 460 287 15 24 474 22 445 3.72e-48 172
Msa0138580 AT2G19440.2 30.803 461 268 19 24 472 21 442 7.76e-48 172
Msa0138580 AT2G19440.1 30.803 461 268 19 24 472 21 442 7.76e-48 172
Msa0138580 AT1G64760.1 29.545 484 288 19 1 472 4 446 2.92e-47 170
Msa0138580 AT1G64760.2 29.545 484 288 19 1 472 4 446 2.92e-47 170
Msa0138580 AT5G20560.1 35.048 311 192 7 24 333 34 335 4.27e-47 166
Msa0138580 AT5G18220.1 27.851 456 290 12 24 472 30 453 3.84e-46 167
Msa0138580 AT5G58480.1 28.322 459 283 14 24 475 26 445 2.77e-45 165
Msa0138580 AT3G55780.1 34.899 298 182 8 53 345 64 354 1.14e-44 161
Msa0138580 AT3G04010.1 27.766 461 283 15 24 472 33 455 6.65e-43 159
Msa0138580 AT4G17180.1 27.115 461 287 15 24 477 25 443 2.93e-42 156
Msa0138580 AT4G09462.1 48.810 84 43 0 391 474 29 112 1.16e-25 101
Msa0138580 AT4G09465.1 47.619 84 44 0 391 474 31 114 3.14e-25 100
Msa0138580 AT4G09464.1 47.619 84 44 0 391 474 31 114 3.54e-25 100
Msa0138580 AT4G09467.1 47.619 84 44 0 391 474 31 114 3.54e-25 100
Msa0138580 AT4G09466.1 47.619 84 44 0 391 474 31 114 9.91e-25 99.0
Msa0138580 AT4G05430.1 45.361 97 52 1 379 474 11 107 1.49e-24 99.4
Msa0138580 AT5G63230.1 47.619 84 44 0 391 474 26 109 2.17e-24 97.8
Msa0138580 AT1G66855.1 48.837 86 43 1 391 475 26 111 2.71e-24 97.8
Msa0138580 AT4G05430.3 45.361 97 52 1 379 474 36 132 5.18e-24 99.0
Msa0138580 AT1G18650.1 48.315 89 46 0 386 474 16 104 9.06e-24 98.6
Msa0138580 AT1G18650.2 49.425 87 44 0 386 472 16 102 1.21e-23 96.7
Msa0138580 AT1G66870.1 46.512 86 45 1 391 475 26 111 1.28e-23 95.9
Msa0138580 AT1G66870.2 46.512 86 45 1 391 475 53 138 1.54e-23 96.7
Msa0138580 AT5G63225.1 47.253 91 48 0 384 474 18 108 2.06e-23 95.1
Msa0138580 AT4G09090.1 41.573 89 52 0 387 475 27 115 2.95e-23 95.1
Msa0138580 AT5G61130.1 47.191 89 47 0 386 474 16 104 8.33e-23 96.3
Msa0138580 AT5G63250.1 44.828 87 45 1 391 474 42 128 3.51e-22 92.4
Msa0138580 AT4G13600.1 47.619 84 44 0 391 474 61 144 4.11e-22 95.1
Msa0138580 AT5G63240.1 41.441 111 60 2 367 474 18 126 4.39e-22 92.0
Msa0138580 AT4G05430.2 45.055 91 49 1 379 468 36 126 1.37e-21 90.9
Msa0138580 AT4G16165.1 45.349 86 46 1 391 475 26 111 1.86e-20 87.0
Msa0138580 AT1G66852.1 44.186 86 46 2 391 475 26 110 5.55e-20 85.5
Msa0138580 AT2G29735.1 48.837 86 42 1 391 474 31 116 2.77e-19 84.0
Msa0138580 AT2G43670.1 40.476 84 49 1 391 474 35 117 5.55e-19 83.2
Msa0138580 AT5G67460.1 38.889 126 72 3 352 474 254 377 8.90e-19 88.6
Msa0138580 AT5G08000.1 46.067 89 48 0 386 474 16 104 1.07e-18 84.7
Msa0138580 AT5G08000.2 48.235 85 44 0 390 474 39 123 2.63e-18 84.0
Msa0138580 AT1G09460.1 45.361 97 51 2 383 479 129 223 3.70e-18 85.9
Msa0138580 AT5G53600.1 42.857 84 47 1 391 474 29 111 6.01e-18 79.7
Msa0138580 AT1G78520.1 41.667 84 48 1 391 474 32 114 3.85e-17 77.8
Msa0138580 AT2G30933.1 44.086 93 46 3 385 474 76 165 4.08e-17 80.9
Msa0138580 AT5G67460.2 39.167 120 68 3 352 468 254 371 1.31e-16 82.0
Msa0138580 AT2G30933.2 40.909 110 54 5 366 468 54 159 1.76e-16 77.4
Msa0138580 AT2G30933.3 40.909 110 54 5 366 468 54 159 1.76e-16 77.4
Msa0138580 AT1G29380.3 45.455 88 42 3 391 475 148 232 3.85e-16 79.0
Msa0138580 AT1G79480.2 40.476 84 50 0 391 474 310 393 3.87e-16 80.5
Msa0138580 AT1G79480.1 40.476 84 50 0 391 474 311 394 3.97e-16 80.5
Msa0138580 AT1G69295.1 46.341 82 43 1 387 468 17 97 4.64e-16 77.8
Msa0138580 AT1G29380.1 45.977 87 41 3 391 474 148 231 4.90e-16 79.3
Msa0138580 AT2G04910.2 41.176 85 49 1 391 474 15 99 8.00e-16 73.6
Msa0138580 AT1G13830.1 41.860 86 48 1 391 474 21 106 9.62e-16 76.3
Msa0138580 AT5G53610.1 42.683 82 46 1 391 472 28 108 1.05e-15 73.6
Msa0138580 AT1G13830.2 41.860 86 48 1 391 474 35 120 1.23e-15 76.3
Msa0138580 AT1G29380.4 46.429 84 39 3 391 471 148 228 3.04e-15 75.5
Msa0138580 AT1G29380.2 46.429 84 39 3 391 471 148 228 3.04e-15 75.5
Msa0138580 AT1G69295.2 45.570 79 42 1 390 468 16 93 6.97e-15 74.3
Msa0138580 AT5G35740.1 41.860 86 48 2 391 474 30 115 9.26e-15 71.2
Msa0138580 AT2G43660.2 38.372 86 52 1 390 474 34 119 9.67e-15 71.2
Msa0138580 AT2G43660.1 38.372 86 52 1 390 474 33 118 9.99e-15 71.2
Msa0138580 AT2G03505.3 37.778 90 54 1 387 474 17 106 1.45e-14 70.5
Msa0138580 AT2G03505.4 37.778 90 54 1 387 474 17 106 1.66e-14 72.0
Msa0138580 AT2G03505.1 37.778 90 54 1 387 474 17 106 1.66e-14 72.0
Msa0138580 AT2G03505.2 37.778 90 54 1 387 474 17 106 1.66e-14 72.0
Msa0138580 AT3G58100.1 41.176 85 49 1 391 474 41 125 6.47e-14 70.5
Msa0138580 AT1G26450.1 44.737 76 41 1 387 462 17 91 1.01e-13 70.5
Msa0138580 AT2G04910.1 41.772 79 45 1 391 468 15 93 1.03e-13 68.2
Msa0138580 AT3G58100.2 41.176 85 49 1 391 474 117 201 2.17e-13 70.5
Msa0138580 AT3G28250.1 38.750 80 48 1 389 468 1 79 1.22e-12 65.1

Find 146 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTGGTGGTAAAATT+AGG 0.082325 1_3:-71687297 Msa0138580:CDS
TGTGCAACTACAAGCAAATT+TGG 0.210617 1_3:-71685977 Msa0138580:CDS
TAGATCTGCACTAGATTCTA+TGG 0.240384 1_3:-71686804 Msa0138580:CDS
TCCTGGAAGGGCTGATAATT+TGG 0.251824 1_3:-71687107 Msa0138580:CDS
GGGTTTGTTGTCGTTTAATA+AGG 0.272334 1_3:-71687185 Msa0138580:CDS
AACATGACAAGAATGGTTTC+TGG 0.284683 1_3:-71689229 Msa0138580:CDS
TCCGATTACGATTCCGATTC+CGG 0.307053 1_3:+71687522 None:intergenic
TTCTCTTGGTGGTAAAATTA+GGG 0.311256 1_3:-71687296 Msa0138580:CDS
GTTGGCGAGGGATTTGATTA+TGG 0.311492 1_3:+71687546 None:intergenic
TTGTCGTTTAATAAGGATAC+TGG 0.317569 1_3:-71687178 Msa0138580:CDS
TATAATAGTTGTATTTATAC+TGG 0.317977 1_3:-71685182 Msa0138580:CDS
CATGAATATGTTTGATGCTC+AGG 0.324784 1_3:-71687026 Msa0138580:intron
CATGCTATGTTACTATTATA+CGG 0.335966 1_3:+71686027 None:intergenic
ACATCAGTTAATCCTGCTTT+TGG 0.340038 1_3:+71685997 None:intergenic
GATTAAGCACCTGCGATCTA+AGG 0.346796 1_3:-71686672 Msa0138580:CDS
GTTGTTGGACTTGGAACTTT+TGG 0.356417 1_3:+71686051 None:intergenic
GTTGGTGGAAATCCAGGTTT+TGG 0.362874 1_3:+71687453 None:intergenic
AATGATACAAATCTTATTAA+CGG 0.369125 1_3:-71687364 Msa0138580:CDS
GCATGGTTAGCTAATGTGTT+AGG 0.371637 1_3:+71685892 None:intergenic
TTACTATTATACGGCGTTGT+TGG 0.396054 1_3:+71686036 None:intergenic
GCTGGTTCTGAGAAAGCCTT+CGG 0.400618 1_3:-71686572 Msa0138580:CDS
CCATTCCTCGGAGTAAACTA+TGG 0.408450 1_3:-71687664 Msa0138580:CDS
GGATAAGGATTAATAGCAAA+AGG 0.408820 1_3:+71687151 None:intergenic
GATAAGGATTAATAGCAAAA+GGG 0.410562 1_3:+71687152 None:intergenic
AACTCGGAGCCACCTTCTGC+TGG 0.410697 1_3:-71687241 Msa0138580:CDS
ACCGGAATCGGAATCGTAAT+CGG 0.412511 1_3:-71687523 Msa0138580:CDS
TTATAAGCAAAATAAGGATA+AGG 0.414067 1_3:+71687136 None:intergenic
CTGGTTCTGAGAAAGCCTTC+GGG 0.427029 1_3:-71686571 Msa0138580:CDS
TCCCTCGCCAACACCGGAAT+CGG 0.431599 1_3:-71687535 Msa0138580:CDS
GACCGGCATTCGGTTGGAAA+AGG 0.437326 1_3:+71687077 None:intergenic
ATGTTGCTGGCGGGATAGTA+AGG 0.437537 1_3:+71687424 None:intergenic
GAGATTGTGGTTGCGGAGAC+AGG 0.439275 1_3:-71686767 Msa0138580:CDS
TTTGCTTATAAAAGTGATCC+TGG 0.441378 1_3:-71687124 Msa0138580:CDS
TACGATTCCGATTCCGGTGT+TGG 0.445725 1_3:+71687528 None:intergenic
ATCCAAGTTTCGCCAAAACC+TGG 0.446819 1_3:-71687465 Msa0138580:CDS
GAGGACGTTGGTGGAAATCC+AGG 0.449002 1_3:+71687447 None:intergenic
TTATACGGCGTTGTTGGACT+TGG 0.451067 1_3:+71686042 None:intergenic
GGATTTGATTATGGCGGGAT+CGG 0.452407 1_3:+71687555 None:intergenic
GCAAATTTGGATTATGCTTG+TGG 0.452527 1_3:-71685964 Msa0138580:CDS
CATTCTTGTCATGTTTACCT+TGG 0.452555 1_3:+71689237 None:intergenic
GCCAAATTATCAGCCCTTCC+AGG 0.454800 1_3:+71687106 None:intergenic
GGAGGGTATGTCGCCGTTTG+CGG 0.457744 1_3:+71687498 None:intergenic
GCATCAACCCGACCGGCATT+CGG 0.458627 1_3:+71687067 None:intergenic
ATCTCTTCTATCACACTGTT+GGG 0.461725 1_3:-71685855 Msa0138580:CDS
GGATGTTGAGATTGTGGTTG+CGG 0.465710 1_3:-71686774 Msa0138580:CDS
ATTCTTGTCATGTTTACCTT+GGG 0.466359 1_3:+71689238 None:intergenic
GCTTTCTCAGAACCAGCTCC+AGG 0.467861 1_3:+71686578 None:intergenic
CAAGGTAAACATGACAAGAA+TGG 0.469473 1_3:-71689236 Msa0138580:exon
TTTCCAACCGAATGCCGGTC+GGG 0.471037 1_3:-71687074 Msa0138580:CDS
TCGTCGTTATCTCCTTTGTA+AGG 0.471777 1_3:+71686740 None:intergenic
TATGATGAGGACTTGAAGCC+TGG 0.475102 1_3:-71686596 Msa0138580:CDS
CTTGATGAAGCTTCTCTTGG+TGG 0.477574 1_3:-71687307 Msa0138580:CDS
GCGCTTGATGAAGCTTCTCT+TGG 0.478524 1_3:-71687310 Msa0138580:CDS
CCATAGTTTACTCCGAGGAA+TGG 0.481901 1_3:+71687664 None:intergenic
TTGGATTATGCTTGTGGGCA+GGG 0.482048 1_3:-71685958 Msa0138580:CDS
TGGATTATGCTTGTGGGCAG+GGG 0.487006 1_3:-71685957 Msa0138580:CDS
TAGTAGCCCCGTGGTATCTC+CGG 0.488228 1_3:-71686474 Msa0138580:intron
TTTCGAAGGCGGTGGTTTGG+AGG 0.488710 1_3:+71687596 None:intergenic
CGGTGGCGGATGCTGGTGGA+AGG 0.489604 1_3:+71687626 None:intergenic
CAAATTTGGATTATGCTTGT+GGG 0.491169 1_3:-71685963 Msa0138580:CDS
ATCGTAATCGGAGCCGCAAA+CGG 0.493965 1_3:-71687511 Msa0138580:CDS
TTTGGATTATGCTTGTGGGC+AGG 0.494350 1_3:-71685959 Msa0138580:CDS
GTGGAAGGTTGTCGGCGACT+TGG 0.495042 1_3:+71687641 None:intergenic
TCCGATTCCGGTGTTGGCGA+GGG 0.497776 1_3:+71687534 None:intergenic
CATAGTTTACTCCGAGGAAT+GGG 0.498903 1_3:+71687665 None:intergenic
TGGTAAAATTAGGGTTTCTA+CGG 0.503871 1_3:-71687287 Msa0138580:CDS
GCGAGGGATTTGATTATGGC+GGG 0.506513 1_3:+71687550 None:intergenic
AATCTCTTCTATCACACTGT+TGG 0.507292 1_3:-71685856 Msa0138580:CDS
GGATGCTGGTGGAAGGTTGT+CGG 0.507464 1_3:+71687633 None:intergenic
AGCACCTGCGATCTAAGGTT+GGG 0.513066 1_3:-71686667 Msa0138580:CDS
GCATGGTGTGTGCCAAAAGC+AGG 0.513211 1_3:-71686009 Msa0138580:CDS
AGATCTGCACTAGATTCTAT+GGG 0.515532 1_3:-71686803 Msa0138580:CDS
GAGGACTTGAAGCCTGGAGC+TGG 0.515732 1_3:-71686590 Msa0138580:CDS
ACTGATTTCCCTGGCATCAG+TGG 0.516517 1_3:+71686641 None:intergenic
GGTGATGAGGATGATGTTGC+TGG 0.516557 1_3:+71687411 None:intergenic
GCCTTTGCATTCTCAATACT+CGG 0.519040 1_3:+71686710 None:intergenic
GTTGGGACACCACTGATGCC+AGG 0.519883 1_3:-71686650 Msa0138580:CDS
TTCCGATTCCGGTGTTGGCG+AGG 0.525201 1_3:+71687533 None:intergenic
AAAGGAGATAACGACGAGGC+TGG 0.525920 1_3:-71686734 Msa0138580:CDS
GGTTCAAAACAAGCACCTCC+TGG 0.528280 1_3:+71685913 None:intergenic
ATCAAATCCCTCGCCAACAC+CGG 0.533535 1_3:-71687541 Msa0138580:CDS
CTTATAAAAGTGATCCTGGA+AGG 0.535941 1_3:-71687120 Msa0138580:CDS
CAACCCGACCGGCATTCGGT+TGG 0.536871 1_3:+71687071 None:intergenic
GGCGAGGGATTTGATTATGG+CGG 0.537617 1_3:+71687549 None:intergenic
CTTCAAGTCCTCATCATACA+AGG 0.538927 1_3:+71686601 None:intergenic
CGACAACAAACCCTGCAAAA+CGG 0.539250 1_3:+71687195 None:intergenic
ATAGTAAGGGAGGACGTTGG+TGG 0.542466 1_3:+71687438 None:intergenic
AAGCACCTGCGATCTAAGGT+TGG 0.545052 1_3:-71686668 Msa0138580:CDS
TGTGAGGAAACTTACTTGCA+AGG 0.552392 1_3:+71689179 None:intergenic
ATAGTTGTATTTATACTGGA+GGG 0.553455 1_3:-71685178 Msa0138580:CDS
TAGTGCTTTGTTGCTTAGAG+AGG 0.556972 1_3:+71686510 None:intergenic
AATAGTTGTATTTATACTGG+AGG 0.558577 1_3:-71685179 Msa0138580:CDS
GATACCACGGGGCTACTAGT+AGG 0.558920 1_3:+71686479 None:intergenic
AGTGTGATAGAAGAGATTCA+TGG 0.564034 1_3:+71685861 None:intergenic
ATCAGTGTTGTAAAGCCCGA+AGG 0.564335 1_3:+71686556 None:intergenic
GTGTCCCAACCTTAGATCGC+AGG 0.566462 1_3:+71686663 None:intergenic
CAAAACAAGCACCTCCTGGT+TGG 0.568304 1_3:+71685917 None:intergenic
GAGTGGTGTCTGTGCAGAGG+AGG 0.572883 1_3:-71685021 Msa0138580:three_prime_UTR
AGTATTTGCATCAACCCGAC+CGG 0.574473 1_3:+71687060 None:intergenic
ATAAGGATTAATAGCAAAAG+GGG 0.575778 1_3:+71687153 None:intergenic
TATGTGTCCACTGATTTCCC+TGG 0.578850 1_3:+71686632 None:intergenic
TTTGCGGTGGCGGATGCTGG+TGG 0.579027 1_3:+71687622 None:intergenic
ATTATTTGAATAACATAACA+TGG 0.582729 1_3:+71684892 None:intergenic
GCAGAATCTGACCCATTCCT+CGG 0.583867 1_3:-71687676 Msa0138580:intron
CTTCGTTGCCGACGGTGATG+AGG 0.587261 1_3:+71687398 None:intergenic
CAAACGATGATCTATGACGC+TGG 0.587813 1_3:-71686533 Msa0138580:CDS
ACTTGGATCGGAAGCGAGGG+AGG 0.590059 1_3:+71687480 None:intergenic
ATGAGGATGATGTTGCTGGC+GGG 0.593640 1_3:+71687415 None:intergenic
CGAAACTTGGATCGGAAGCG+AGG 0.597502 1_3:+71687476 None:intergenic
TTCTACGGTTCATACGATGT+CGG 0.598813 1_3:-71687272 Msa0138580:CDS
TTGGGACACCACTGATGCCA+GGG 0.599886 1_3:-71686649 Msa0138580:CDS
CGTATAATAGTAACATAGCA+TGG 0.600001 1_3:-71686026 Msa0138580:CDS
CATCTTTGCCTTGTATGATG+AGG 0.600659 1_3:-71686609 Msa0138580:CDS
GAAACTTGGATCGGAAGCGA+GGG 0.603669 1_3:+71687477 None:intergenic
TCATGAAAACTTCCAGCAGA+AGG 0.604960 1_3:+71687229 None:intergenic
AGATTGTGGTTGCGGAGACA+GGG 0.609553 1_3:-71686766 Msa0138580:CDS
CGGGATCGGTTCCGTATAGT+CGG 0.611085 1_3:+71687569 None:intergenic
GCAGTTTCAAAGTCTTCCCA+AGG 0.612888 1_3:-71689254 Msa0138580:five_prime_UTR
AATTCATACCGGAGATACCA+CGG 0.615954 1_3:+71686466 None:intergenic
AGTGGTGTCTGTGCAGAGGA+GGG 0.617599 1_3:-71685020 Msa0138580:three_prime_UTR
GATTGTAGCTTAATCCAACC+AGG 0.618358 1_3:-71685931 Msa0138580:CDS
AACATCATCCTCATCACCGT+CGG 0.621796 1_3:-71687406 Msa0138580:CDS
ATTCATACCGGAGATACCAC+GGG 0.621948 1_3:+71686467 None:intergenic
GAGACAGGGTGGCCTTACAA+AGG 0.630203 1_3:-71686752 Msa0138580:CDS
TTATAAAAGTGATCCTGGAA+GGG 0.632786 1_3:-71687119 Msa0138580:CDS
CTTGGATCGGAAGCGAGGGA+GGG 0.633878 1_3:+71687481 None:intergenic
GAGAATGCAAAGGCTTACAA+TGG 0.637829 1_3:-71686701 Msa0138580:CDS
AAAGAGTGGTGTCTGTGCAG+AGG 0.638878 1_3:-71685024 Msa0138580:three_prime_UTR
TGTTGCTGGCGGGATAGTAA+GGG 0.641175 1_3:+71687425 None:intergenic
TGAAAACTTCCAGCAGAAGG+TGG 0.643067 1_3:+71687232 None:intergenic
GATTCATGGCGTATGCAGCA+TGG 0.644106 1_3:+71685875 None:intergenic
ACCGAGTATTGAGAATGCAA+AGG 0.650369 1_3:-71686711 Msa0138580:CDS
TGCTGGCGGGATAGTAAGGG+AGG 0.653268 1_3:+71687428 None:intergenic
AACGTTAACAGAAATAGAGG+AGG 0.656829 1_3:+71684993 None:intergenic
AGTGATGACTTCGTTGCCGA+CGG 0.661992 1_3:+71687390 None:intergenic
GATGAGGATGATGTTGCTGG+CGG 0.665630 1_3:+71687414 None:intergenic
ACGGGGCTACTAGTAGGTGT+AGG 0.667625 1_3:+71686485 None:intergenic
GGGATAGTAAGGGAGGACGT+TGG 0.674640 1_3:+71687435 None:intergenic
AGTGCTCAGAAATAAAAGAG+TGG 0.677774 1_3:-71685038 Msa0138580:three_prime_UTR
ACTGATGCCAGGGAAATCAG+TGG 0.687146 1_3:-71686639 Msa0138580:CDS
TTGTGGTTGCGGAGACAGGG+TGG 0.690352 1_3:-71686763 Msa0138580:CDS
CTTGGCCATAGTTTACTCCG+AGG 0.717839 1_3:+71687659 None:intergenic
TACACCTACTAGTAGCCCCG+TGG 0.742913 1_3:-71686483 Msa0138580:CDS
TGTAGCTTAATCCAACCAGG+AGG 0.770988 1_3:-71685928 Msa0138580:CDS
TTCATACCGGAGATACCACG+GGG 0.792540 1_3:+71686468 None:intergenic
TTACAAAGGAGATAACGACG+AGG 0.827370 1_3:-71686738 Msa0138580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTATATATATTATCAAAT+AGG + chr1_3:71685745-71685764 None:intergenic 10.0%
!!! CTATTTGATAATATATATAA+TGG - chr1_3:71685743-71685762 Msa0138580:intron 10.0%
!! TTAAAACATCATCAAAAATT+AGG + chr1_3:71685126-71685145 None:intergenic 15.0%
!!! TAATTTTGTGAATTAAAACT+GGG - chr1_3:71685252-71685271 Msa0138580:intron 15.0%
!! AGAGAATTAAAAAAAAAAAC+TGG - chr1_3:71686097-71686116 Msa0138580:intron 15.0%
!!! GTCAATTTTTAAAAATTCTT+AGG + chr1_3:71686281-71686300 None:intergenic 15.0%
!! AATGATACAAATCTTATTAA+CGG - chr1_3:71686762-71686781 Msa0138580:CDS 15.0%
!! ATATAATCAGAATTGATATT+TGG + chr1_3:71687131-71687150 None:intergenic 15.0%
!! TGTTTAAACAATACTATATT+AGG - chr1_3:71688557-71688576 Msa0138580:intron 15.0%
!! GTTTAAACAATACTATATTA+GGG - chr1_3:71688558-71688577 Msa0138580:intron 15.0%
!!! ATATACTTTGTTTATTTTGT+AGG - chr1_3:71688920-71688939 Msa0138580:intron 15.0%
!! TATAATAGTTGTATTTATAC+TGG - chr1_3:71688944-71688963 Msa0138580:intron 15.0%
!!! TTATCGTTAAAAAAATGTTT+TGG - chr1_3:71689057-71689076 Msa0138580:intron 15.0%
!! ATTATTTGAATAACATAACA+TGG + chr1_3:71689237-71689256 None:intergenic 15.0%
!!! TCTTTTTAATCTGTTCTTAA+CGG - chr1_3:71685180-71685199 Msa0138580:CDS 20.0%
!! ATTCACAAAATTAGAGATTA+TGG + chr1_3:71685245-71685264 None:intergenic 20.0%
!!! CTAATTTTGTGAATTAAAAC+TGG - chr1_3:71685251-71685270 Msa0138580:intron 20.0%
!! AACATTTCTTATTCTAACTA+TGG - chr1_3:71685619-71685638 Msa0138580:intron 20.0%
!!! TAATTATAAGCTCAGTTTTA+AGG + chr1_3:71685890-71685909 None:intergenic 20.0%
!! ATTCAATCATCATTCAAAAT+CGG + chr1_3:71685980-71685999 None:intergenic 20.0%
!!! ATAGAAGAATTTTTAAGTAG+AGG - chr1_3:71686306-71686325 Msa0138580:intron 20.0%
!! TTATAAGCAAAATAAGGATA+AGG + chr1_3:71686993-71687012 None:intergenic 20.0%
!!! TCACTTTTATAAGCAAAATA+AGG + chr1_3:71686999-71687018 None:intergenic 20.0%
!! AGTTAATAACTGATTATTAG+TGG - chr1_3:71688604-71688623 Msa0138580:intron 20.0%
!! GTTAATAACTGATTATTAGT+GGG - chr1_3:71688605-71688624 Msa0138580:intron 20.0%
!! AGACAAAAGTTATTAGAAAA+TGG + chr1_3:71688720-71688739 None:intergenic 20.0%
!!! TTGTTTATCACTTTAGATTT+TGG - chr1_3:71688809-71688828 Msa0138580:intron 20.0%
!!! TATCTACTTTCTTGTTTTTT+AGG + chr1_3:71688983-71689002 None:intergenic 20.0%
!! AAAAACAAGAAAGTAGATAA+AGG - chr1_3:71688984-71689003 Msa0138580:intron 20.0%
!! TTCTTTGTTTCATTAAGTTG+AGG - chr1_3:71685040-71685059 Msa0138580:three_prime_UTR 25.0%
! AAACAAATGAAAAATGCTAG+CGG + chr1_3:71685149-71685168 None:intergenic 25.0%
!!! TAAATATTTTTACTCTCCCA+CGG + chr1_3:71685314-71685333 None:intergenic 25.0%
!!! AAATATTTATTTTCACCCGT+TGG - chr1_3:71685325-71685344 Msa0138580:intron 25.0%
!!! GAAGATGATTATTTCTACAA+GGG + chr1_3:71685459-71685478 None:intergenic 25.0%
! GAAATAATCATCTTCCATAA+AGG - chr1_3:71685464-71685483 Msa0138580:intron 25.0%
! ATTGATGAATGAGCAATAAA+GGG + chr1_3:71685576-71685595 None:intergenic 25.0%
! AATTGATGAATGAGCAATAA+AGG + chr1_3:71685577-71685596 None:intergenic 25.0%
! TTCAATCATCATTCAAAATC+GGG + chr1_3:71685979-71685998 None:intergenic 25.0%
! TTTAGATAACCTAGTTAGAT+TGG + chr1_3:71686194-71686213 None:intergenic 25.0%
! TGATGTTGTGATATATGTTT+CGG + chr1_3:71686250-71686269 None:intergenic 25.0%
! ATAAGGATTAATAGCAAAAG+GGG + chr1_3:71686976-71686995 None:intergenic 25.0%
! GATAAGGATTAATAGCAAAA+GGG + chr1_3:71686977-71686996 None:intergenic 25.0%
! TAAAGTGATAGAATTCATAC+CGG + chr1_3:71687674-71687693 None:intergenic 25.0%
! CATGCTATGTTACTATTATA+CGG + chr1_3:71688102-71688121 None:intergenic 25.0%
! TGTGAAAAATCACAAGTTAA+TGG + chr1_3:71688303-71688322 None:intergenic 25.0%
! TATGCAATGTATGTAGTATT+TGG + chr1_3:71688642-71688661 None:intergenic 25.0%
!! GTATTAAGTTGTGCATTATT+CGG - chr1_3:71688665-71688684 Msa0138580:intron 25.0%
!! TTGTTTATCCCTTTAGATTT+TGG - chr1_3:71688739-71688758 Msa0138580:intron 25.0%
! CTCAATTACCAAAATCTAAA+GGG + chr1_3:71688750-71688769 None:intergenic 25.0%
! TCTCAATTACCAAAATCTAA+AGG + chr1_3:71688751-71688770 None:intergenic 25.0%
! AATAGTTGTATTTATACTGG+AGG - chr1_3:71688947-71688966 Msa0138580:intron 25.0%
! ATAGTTGTATTTATACTGGA+GGG - chr1_3:71688948-71688967 Msa0138580:intron 25.0%
! AAAAACGTTAACAGAAATAG+AGG + chr1_3:71689139-71689158 None:intergenic 25.0%
ATTCTTGTCATGTTTACCTT+GGG + chr1_3:71684891-71684910 None:intergenic 30.0%
TGTAACTGAGATTGTAAGAA+GGG + chr1_3:71684974-71684993 None:intergenic 30.0%
!!! GAAACAAGTGATTTTGACTT+TGG + chr1_3:71685023-71685042 None:intergenic 30.0%
!! TATATCCTTTAATTTTGCCC+AGG - chr1_3:71685090-71685109 Msa0138580:three_prime_UTR 30.0%
!! GGAAGATGATTATTTCTACA+AGG + chr1_3:71685460-71685479 None:intergenic 30.0%
TTATTGTCAAATTACCCTAC+TGG - chr1_3:71685676-71685695 Msa0138580:intron 30.0%
! TTAGATCCATGTTTCTGATA+AGG - chr1_3:71685781-71685800 Msa0138580:intron 30.0%
TGCATAGTGTTTATAGTCTT+CGG - chr1_3:71686046-71686065 Msa0138580:CDS 30.0%
!! CTAGTTTTTGATATTGAGAG+AGG + chr1_3:71686079-71686098 None:intergenic 30.0%
!!! CATCCTTGTTTTCAATGAAT+TGG + chr1_3:71686333-71686352 None:intergenic 30.0%
! TTCTCTTGGTGGTAAAATTA+GGG - chr1_3:71686830-71686849 Msa0138580:intron 30.0%
TGGTAAAATTAGGGTTTCTA+CGG - chr1_3:71686839-71686858 Msa0138580:intron 30.0%
! TTGTCGTTTAATAAGGATAC+TGG - chr1_3:71686948-71686967 Msa0138580:intron 30.0%
GGATAAGGATTAATAGCAAA+AGG + chr1_3:71686978-71686997 None:intergenic 30.0%
TTTGCTTATAAAAGTGATCC+TGG - chr1_3:71687002-71687021 Msa0138580:intron 30.0%
TTATAAAAGTGATCCTGGAA+GGG - chr1_3:71687007-71687026 Msa0138580:intron 30.0%
!! TCAAAATTTTATGAGTGTCG+AGG - chr1_3:71687168-71687187 Msa0138580:CDS 30.0%
! ACTAGATTCTATGGGTTTTA+AGG - chr1_3:71687331-71687350 Msa0138580:CDS 30.0%
!! TTTTAAGGATGTTGAGATTG+TGG - chr1_3:71687346-71687365 Msa0138580:CDS 30.0%
ATGAAAATGATGATACTTGG+TGG + chr1_3:71687765-71687784 None:intergenic 30.0%
GGTATGAAAATGATGATACT+TGG + chr1_3:71687768-71687787 None:intergenic 30.0%
TTGAATTTGATTGAAGACTC+CGG - chr1_3:71687835-71687854 Msa0138580:intron 30.0%
! TTTAAGAATTCCGCTTTGTT+TGG + chr1_3:71687911-71687930 None:intergenic 30.0%
AACAAAGCGGAATTCTTAAA+CGG - chr1_3:71687911-71687930 Msa0138580:intron 30.0%
GATTAATGATTGCAAAATGC+TGG + chr1_3:71687945-71687964 None:intergenic 30.0%
CGTATAATAGTAACATAGCA+TGG - chr1_3:71688100-71688119 Msa0138580:intron 30.0%
CAAATTTGGATTATGCTTGT+GGG - chr1_3:71688163-71688182 Msa0138580:intron 30.0%
TTTCTCAGATATCGTAAGAT+AGG + chr1_3:71688395-71688414 None:intergenic 30.0%
! TACTATGCACAGTTGATTTA+TGG + chr1_3:71688463-71688482 None:intergenic 30.0%
! ATTATTCGGCAAAAGTTGAT+TGG - chr1_3:71688679-71688698 Msa0138580:intron 30.0%
!! GATTTTGGTAATTGAGAATG+TGG - chr1_3:71688754-71688773 Msa0138580:intron 30.0%
CATTCTTGTCATGTTTACCT+TGG + chr1_3:71684892-71684911 None:intergenic 35.0%
CAAGGTAAACATGACAAGAA+TGG - chr1_3:71684890-71684909 Msa0138580:three_prime_UTR 35.0%
AACATGACAAGAATGGTTTC+TGG - chr1_3:71684897-71684916 Msa0138580:three_prime_UTR 35.0%
GTGTAACTGAGATTGTAAGA+AGG + chr1_3:71684975-71684994 None:intergenic 35.0%
TAAGACCTGGGCAAAATTAA+AGG + chr1_3:71685098-71685117 None:intergenic 35.0%
AATTAGGCAAAGTAAGACCT+GGG + chr1_3:71685110-71685129 None:intergenic 35.0%
AAATTAGGCAAAGTAAGACC+TGG + chr1_3:71685111-71685130 None:intergenic 35.0%
! TATTTCTACAAGGGTGGATT+TGG + chr1_3:71685450-71685469 None:intergenic 35.0%
!! GATGATTATTTCTACAAGGG+TGG + chr1_3:71685456-71685475 None:intergenic 35.0%
AATCTTCAACAGTGCCTTTA+TGG + chr1_3:71685481-71685500 None:intergenic 35.0%
! AATGGCGACAAAGATGTTTT+TGG + chr1_3:71685543-71685562 None:intergenic 35.0%
ATAAAGGGCTACGATGATAA+TGG + chr1_3:71685561-71685580 None:intergenic 35.0%
ACATGGATCTAAACTTCAGA+TGG + chr1_3:71685773-71685792 None:intergenic 35.0%
GCATAGTGTTTATAGTCTTC+GGG - chr1_3:71686047-71686066 Msa0138580:CDS 35.0%
TGGCACGAGCAAATAAATTT+AGG + chr1_3:71686147-71686166 None:intergenic 35.0%
! ATAACCTAGTTAGATTGGCT+CGG + chr1_3:71686189-71686208 None:intergenic 35.0%
GGACCAATTCATTGAAAACA+AGG - chr1_3:71686327-71686346 Msa0138580:intron 35.0%
TTCGAAAAAGTCCGACTATA+CGG - chr1_3:71686546-71686565 Msa0138580:CDS 35.0%
! TTTTGCATGTTCTGTATAGC+TGG + chr1_3:71686795-71686814 None:intergenic 35.0%
! CTTCTCTTGGTGGTAAAATT+AGG - chr1_3:71686829-71686848 Msa0138580:intron 35.0%
!!! GATGTCGGTTTTGAAAAACT+CGG - chr1_3:71686869-71686888 Msa0138580:intron 35.0%
! GAATATAGTACCGTTTTGCA+GGG - chr1_3:71686921-71686940 Msa0138580:intron 35.0%
!! GGGTTTGTTGTCGTTTAATA+AGG - chr1_3:71686941-71686960 Msa0138580:intron 35.0%
CTTATAAAAGTGATCCTGGA+AGG - chr1_3:71687006-71687025 Msa0138580:intron 35.0%
CATGAATATGTTTGATGCTC+AGG - chr1_3:71687100-71687119 Msa0138580:CDS 35.0%
! TTTTATCGTGTGTATTGTGC+AGG - chr1_3:71687289-71687308 Msa0138580:CDS 35.0%
TAGATCTGCACTAGATTCTA+TGG - chr1_3:71687322-71687341 Msa0138580:CDS 35.0%
AGATCTGCACTAGATTCTAT+GGG - chr1_3:71687323-71687342 Msa0138580:CDS 35.0%
TAGAACAGTTTCAAGATGAG+AGG + chr1_3:71687789-71687808 None:intergenic 35.0%
!! CTTTGTTTGGTGTAGAACTT+GGG + chr1_3:71687898-71687917 None:intergenic 35.0%
AAGTTCTACACCAAACAAAG+CGG - chr1_3:71687898-71687917 Msa0138580:intron 35.0%
!! ACTTTTGGCGTTGAATTCAT+AGG + chr1_3:71688063-71688082 None:intergenic 35.0%
TTACTATTATACGGCGTTGT+TGG + chr1_3:71688093-71688112 None:intergenic 35.0%
! ACATCAGTTAATCCTGCTTT+TGG + chr1_3:71688132-71688151 None:intergenic 35.0%
TGTGCAACTACAAGCAAATT+TGG - chr1_3:71688149-71688168 Msa0138580:intron 35.0%
GCAAATTTGGATTATGCTTG+TGG - chr1_3:71688162-71688181 Msa0138580:intron 35.0%
AGTGTGATAGAAGAGATTCA+TGG + chr1_3:71688268-71688287 None:intergenic 35.0%
AATCTCTTCTATCACACTGT+TGG - chr1_3:71688270-71688289 Msa0138580:intron 35.0%
ATCTCTTCTATCACACTGTT+GGG - chr1_3:71688271-71688290 Msa0138580:intron 35.0%
!! AAAGTTGATTGGTTCTGACT+TGG - chr1_3:71688690-71688709 Msa0138580:intron 35.0%
AGTGCTCAGAAATAAAAGAG+TGG - chr1_3:71689088-71689107 Msa0138580:intron 35.0%
AACGTTAACAGAAATAGAGG+AGG + chr1_3:71689136-71689155 None:intergenic 35.0%
TGTGAGGAAACTTACTTGCA+AGG + chr1_3:71684950-71684969 None:intergenic 40.0%
AGATTGTAAGAAGGGTTGTG+AGG + chr1_3:71684966-71684985 None:intergenic 40.0%
TGTGAATTAAAACTGGGCCA+AGG - chr1_3:71685258-71685277 Msa0138580:intron 40.0%
ATGAGCTTTCACTATCCAAC+GGG + chr1_3:71685343-71685362 None:intergenic 40.0%
CATGAGCTTTCACTATCCAA+CGG + chr1_3:71685344-71685363 None:intergenic 40.0%
TTCTCTATTCTCTCTCCTCT+TGG - chr1_3:71685413-71685432 Msa0138580:intron 40.0%
!! AAGGCACTGTTGAAGATTTC+TGG - chr1_3:71685483-71685502 Msa0138580:intron 40.0%
TCTGAACTTTACTGCCAGTA+GGG + chr1_3:71685693-71685712 None:intergenic 40.0%
ATCTGAACTTTACTGCCAGT+AGG + chr1_3:71685694-71685713 None:intergenic 40.0%
! TCCATGTTTCTGATAAGGTG+TGG - chr1_3:71685786-71685805 Msa0138580:intron 40.0%
! CCATGTTTCTGATAAGGTGT+GGG - chr1_3:71685787-71685806 Msa0138580:intron 40.0%
!!! CAGTTTTAAGGTGCCTTCTA+GGG + chr1_3:71685878-71685897 None:intergenic 40.0%
!!! TCAGTTTTAAGGTGCCTTCT+AGG + chr1_3:71685879-71685898 None:intergenic 40.0%
TGTTTATAGTCTTCGGGTCA+AGG - chr1_3:71686053-71686072 Msa0138580:CDS 40.0%
CATAGTTTACTCCGAGGAAT+GGG + chr1_3:71686464-71686483 None:intergenic 40.0%
!!! GTATAGTCGGACTTTTTCGA+AGG + chr1_3:71686547-71686566 None:intergenic 40.0%
TTCTACGGTTCATACGATGT+CGG - chr1_3:71686854-71686873 Msa0138580:intron 40.0%
TCATGAAAACTTCCAGCAGA+AGG + chr1_3:71686900-71686919 None:intergenic 40.0%
! CGAATATAGTACCGTTTTGC+AGG - chr1_3:71686920-71686939 Msa0138580:intron 40.0%
TACTTTATCCCTCGTGTACA+TGG - chr1_3:71687192-71687211 Msa0138580:CDS 40.0%
TCGTCGTTATCTCCTTTGTA+AGG + chr1_3:71687389-71687408 None:intergenic 40.0%
TTACAAAGGAGATAACGACG+AGG - chr1_3:71687388-71687407 Msa0138580:CDS 40.0%
!! ACCGAGTATTGAGAATGCAA+AGG - chr1_3:71687415-71687434 Msa0138580:CDS 40.0%
GCCTTTGCATTCTCAATACT+CGG + chr1_3:71687419-71687438 None:intergenic 40.0%
GAGAATGCAAAGGCTTACAA+TGG - chr1_3:71687425-71687444 Msa0138580:CDS 40.0%
CATCTTTGCCTTGTATGATG+AGG - chr1_3:71687517-71687536 Msa0138580:CDS 40.0%
CTTCAAGTCCTCATCATACA+AGG + chr1_3:71687528-71687547 None:intergenic 40.0%
! TAGTGCTTTGTTGCTTAGAG+AGG + chr1_3:71687619-71687638 None:intergenic 40.0%
AATTCATACCGGAGATACCA+CGG + chr1_3:71687663-71687682 None:intergenic 40.0%
! TGATGATACTTGGTGGTTGA+AGG + chr1_3:71687758-71687777 None:intergenic 40.0%
! ACTGGAGTTTTCGATACTTC+CGG + chr1_3:71687857-71687876 None:intergenic 40.0%
!! GCTTTGTTTGGTGTAGAACT+TGG + chr1_3:71687899-71687918 None:intergenic 40.0%
! GTTGTTGGACTTGGAACTTT+TGG + chr1_3:71688078-71688097 None:intergenic 40.0%
GATTGTAGCTTAATCCAACC+AGG - chr1_3:71688195-71688214 Msa0138580:intron 40.0%
! GCATGGTTAGCTAATGTGTT+AGG + chr1_3:71688237-71688256 None:intergenic 40.0%
AACCCAAGTAAGTTCTCATG+CGG - chr1_3:71688345-71688364 Msa0138580:intron 40.0%
AACCGCATGAGAACTTACTT+GGG + chr1_3:71688350-71688369 None:intergenic 40.0%
AAACCGCATGAGAACTTACT+TGG + chr1_3:71688351-71688370 None:intergenic 40.0%
!! GATTTTGGCAATTGAGAGTG+TGG - chr1_3:71688824-71688843 Msa0138580:intron 40.0%
GCAGTTTCAAAGTCTTCCCA+AGG - chr1_3:71684872-71684891 Msa0138580:three_prime_UTR 45.0%
ATTAAAACTGGGCCAAGGCT+AGG - chr1_3:71685263-71685282 Msa0138580:intron 45.0%
TTAAAACTGGGCCAAGGCTA+GGG - chr1_3:71685264-71685283 Msa0138580:intron 45.0%
CTTGATAAGTCTCTCACCGT+GGG - chr1_3:71685295-71685314 Msa0138580:intron 45.0%
TTGGACAAGGAAGAACCAAG+AGG + chr1_3:71685431-71685450 None:intergenic 45.0%
! TACAAGGGTGGATTTGGACA+AGG + chr1_3:71685444-71685463 None:intergenic 45.0%
CCCACACCTTATCAGAAACA+TGG + chr1_3:71685790-71685809 None:intergenic 45.0%
! TGTTTCTGATAAGGTGTGGG+AGG - chr1_3:71685790-71685809 Msa0138580:intron 45.0%
GTTTCTGATAAGGTGTGGGA+GGG - chr1_3:71685791-71685810 Msa0138580:intron 45.0%
!! TTTAAGGTGCCTTCTAGGGT+GGG + chr1_3:71685874-71685893 None:intergenic 45.0%
!!! TTTTAAGGTGCCTTCTAGGG+TGG + chr1_3:71685875-71685894 None:intergenic 45.0%
CCATAGTTTACTCCGAGGAA+TGG + chr1_3:71686465-71686484 None:intergenic 45.0%
CCATTCCTCGGAGTAAACTA+TGG - chr1_3:71686462-71686481 Msa0138580:intron 45.0%
!!! TAGTCGGACTTTTTCGAAGG+CGG + chr1_3:71686544-71686563 None:intergenic 45.0%
! GGATTTGATTATGGCGGGAT+CGG + chr1_3:71686574-71686593 None:intergenic 45.0%
GTTGGCGAGGGATTTGATTA+TGG + chr1_3:71686583-71686602 None:intergenic 45.0%
ACCGGAATCGGAATCGTAAT+CGG - chr1_3:71686603-71686622 Msa0138580:CDS 45.0%
TCCGATTACGATTCCGATTC+CGG + chr1_3:71686607-71686626 None:intergenic 45.0%
!! GGTTTTGGCGAAACTTGGAT+CGG + chr1_3:71686661-71686680 None:intergenic 45.0%
ATCCAAGTTTCGCCAAAACC+TGG - chr1_3:71686661-71686680 Msa0138580:CDS 45.0%
!! ATCCAGGTTTTGGCGAAACT+TGG + chr1_3:71686666-71686685 None:intergenic 45.0%
!! GTTGGTGGAAATCCAGGTTT+TGG + chr1_3:71686676-71686695 None:intergenic 45.0%
AACATCATCCTCATCACCGT+CGG - chr1_3:71686720-71686739 Msa0138580:CDS 45.0%
CTTGATGAAGCTTCTCTTGG+TGG - chr1_3:71686819-71686838 Msa0138580:intron 45.0%
TGAAAACTTCCAGCAGAAGG+TGG + chr1_3:71686897-71686916 None:intergenic 45.0%
CGACAACAAACCCTGCAAAA+CGG + chr1_3:71686934-71686953 None:intergenic 45.0%
TCCTGGAAGGGCTGATAATT+TGG - chr1_3:71687019-71687038 Msa0138580:intron 45.0%
AGTATTTGCATCAACCCGAC+CGG + chr1_3:71687069-71687088 None:intergenic 45.0%
ACTTGACTCCATGTACACGA+GGG + chr1_3:71687203-71687222 None:intergenic 45.0%
TACTTGACTCCATGTACACG+AGG + chr1_3:71687204-71687223 None:intergenic 45.0%
TATCGTGTGTATTGTGCAGG+TGG - chr1_3:71687292-71687311 Msa0138580:CDS 45.0%
GGATGTTGAGATTGTGGTTG+CGG - chr1_3:71687352-71687371 Msa0138580:CDS 45.0%
GATTAAGCACCTGCGATCTA+AGG - chr1_3:71687454-71687473 Msa0138580:CDS 45.0%
!! TATGTGTCCACTGATTTCCC+TGG + chr1_3:71687497-71687516 None:intergenic 45.0%
TATGATGAGGACTTGAAGCC+TGG - chr1_3:71687530-71687549 Msa0138580:CDS 45.0%
ATCAGTGTTGTAAAGCCCGA+AGG + chr1_3:71687573-71687592 None:intergenic 45.0%
CAAACGATGATCTATGACGC+TGG - chr1_3:71687593-71687612 Msa0138580:CDS 45.0%
ATTCATACCGGAGATACCAC+GGG + chr1_3:71687662-71687681 None:intergenic 45.0%
! ACTTGGTGGTTGAAGGTTCA+TGG + chr1_3:71687751-71687770 None:intergenic 45.0%
TTATACGGCGTTGTTGGACT+TGG + chr1_3:71688087-71688106 None:intergenic 45.0%
TTTGGATTATGCTTGTGGGC+AGG - chr1_3:71688167-71688186 Msa0138580:intron 45.0%
TTGGATTATGCTTGTGGGCA+GGG - chr1_3:71688168-71688187 Msa0138580:intron 45.0%
TGTAGCTTAATCCAACCAGG+AGG - chr1_3:71688198-71688217 Msa0138580:intron 45.0%
!!! TATTTGATAATATATATAAT+GGG - chr1_3:71685744-71685763 Msa0138580:intron 5.0%
GCTTGATAAGTCTCTCACCG+TGG - chr1_3:71685294-71685313 Msa0138580:intron 50.0%
!!! GCTGCTTTTTCACTCACCCA+CGG - chr1_3:71685828-71685847 Msa0138580:CDS 50.0%
!! CTTTTTCACTCACCCACGGT+GGG - chr1_3:71685832-71685851 Msa0138580:CDS 50.0%
CTTAATAGGTCTCCCACCGT+GGG + chr1_3:71685847-71685866 None:intergenic 50.0%
CTAGGGTGGGAGAGCTTAAT+AGG + chr1_3:71685861-71685880 None:intergenic 50.0%
TTAAGCTCTCCCACCCTAGA+AGG - chr1_3:71685862-71685881 Msa0138580:CDS 50.0%
!! GTGGGATTGGTTTGAGAGCT+TGG + chr1_3:71686167-71686186 None:intergenic 50.0%
!! TTAGATTGGCTCGGTGGGAT+TGG + chr1_3:71686180-71686199 None:intergenic 50.0%
!! CCTAGTTAGATTGGCTCGGT+GGG + chr1_3:71686185-71686204 None:intergenic 50.0%
!! ACCTAGTTAGATTGGCTCGG+TGG + chr1_3:71686186-71686205 None:intergenic 50.0%
GCAGAATCTGACCCATTCCT+CGG - chr1_3:71686450-71686469 Msa0138580:intron 50.0%
CTTGGCCATAGTTTACTCCG+AGG + chr1_3:71686470-71686489 None:intergenic 50.0%
!! GGTGGTTTGGAGGAGTTTTG+CGG + chr1_3:71686523-71686542 None:intergenic 50.0%
!!! CTTTTTCGAAGGCGGTGGTT+TGG + chr1_3:71686536-71686555 None:intergenic 50.0%
GCGAGGGATTTGATTATGGC+GGG + chr1_3:71686579-71686598 None:intergenic 50.0%
GGCGAGGGATTTGATTATGG+CGG + chr1_3:71686580-71686599 None:intergenic 50.0%
ATCAAATCCCTCGCCAACAC+CGG - chr1_3:71686585-71686604 Msa0138580:CDS 50.0%
TACGATTCCGATTCCGGTGT+TGG + chr1_3:71686601-71686620 None:intergenic 50.0%
ATCGTAATCGGAGCCGCAAA+CGG - chr1_3:71686615-71686634 Msa0138580:CDS 50.0%
GAAACTTGGATCGGAAGCGA+GGG + chr1_3:71686652-71686671 None:intergenic 50.0%
ATAGTAAGGGAGGACGTTGG+TGG + chr1_3:71686691-71686710 None:intergenic 50.0%
TGTTGCTGGCGGGATAGTAA+GGG + chr1_3:71686704-71686723 None:intergenic 50.0%
ATGTTGCTGGCGGGATAGTA+AGG + chr1_3:71686705-71686724 None:intergenic 50.0%
ATGAGGATGATGTTGCTGGC+GGG + chr1_3:71686714-71686733 None:intergenic 50.0%
GATGAGGATGATGTTGCTGG+CGG + chr1_3:71686715-71686734 None:intergenic 50.0%
GGTGATGAGGATGATGTTGC+TGG + chr1_3:71686718-71686737 None:intergenic 50.0%
AGTGATGACTTCGTTGCCGA+CGG + chr1_3:71686739-71686758 None:intergenic 50.0%
GCGCTTGATGAAGCTTCTCT+TGG - chr1_3:71686816-71686835 Msa0138580:CDS 50.0%
GCCAAATTATCAGCCCTTCC+AGG + chr1_3:71687023-71687042 None:intergenic 50.0%
! TGCCTTTTCCAACCGAATGC+CGG - chr1_3:71687047-71687066 Msa0138580:CDS 50.0%
! TTTTCCAACCGAATGCCGGT+CGG - chr1_3:71687051-71687070 Msa0138580:CDS 50.0%
AGATTGTGGTTGCGGAGACA+GGG - chr1_3:71687360-71687379 Msa0138580:CDS 50.0%
AAAGGAGATAACGACGAGGC+TGG - chr1_3:71687392-71687411 Msa0138580:CDS 50.0%
! AAGCACCTGCGATCTAAGGT+TGG - chr1_3:71687458-71687477 Msa0138580:CDS 50.0%
! AGCACCTGCGATCTAAGGTT+GGG - chr1_3:71687459-71687478 Msa0138580:CDS 50.0%
! ACTGATTTCCCTGGCATCAG+TGG + chr1_3:71687488-71687507 None:intergenic 50.0%
ACTGATGCCAGGGAAATCAG+TGG - chr1_3:71687487-71687506 Msa0138580:CDS 50.0%
!! GCTGGTTCTGAGAAAGCCTT+CGG - chr1_3:71687554-71687573 Msa0138580:CDS 50.0%
!! CTGGTTCTGAGAAAGCCTTC+GGG - chr1_3:71687555-71687574 Msa0138580:CDS 50.0%
TTCATACCGGAGATACCACG+GGG + chr1_3:71687661-71687680 None:intergenic 50.0%
TGGATTATGCTTGTGGGCAG+GGG - chr1_3:71688169-71688188 Msa0138580:intron 50.0%
CAAAACAAGCACCTCCTGGT+TGG + chr1_3:71688212-71688231 None:intergenic 50.0%
GGTTCAAAACAAGCACCTCC+TGG + chr1_3:71688216-71688235 None:intergenic 50.0%
GATTCATGGCGTATGCAGCA+TGG + chr1_3:71688254-71688273 None:intergenic 50.0%
AAAGAGTGGTGTCTGTGCAG+AGG - chr1_3:71689102-71689121 Msa0138580:intron 50.0%
!!! GCTTTTTCACTCACCCACGG+TGG - chr1_3:71685831-71685850 Msa0138580:CDS 55.0%
GCTTAATAGGTCTCCCACCG+TGG + chr1_3:71685848-71685867 None:intergenic 55.0%
CCCACCGAGCCAATCTAACT+AGG - chr1_3:71686182-71686201 Msa0138580:intron 55.0%
GGATGCTGGTGGAAGGTTGT+CGG + chr1_3:71686496-71686515 None:intergenic 55.0%
! TTGGAGGAGTTTTGCGGTGG+CGG + chr1_3:71686517-71686536 None:intergenic 55.0%
! GGTTTGGAGGAGTTTTGCGG+TGG + chr1_3:71686520-71686539 None:intergenic 55.0%
! TTTCGAAGGCGGTGGTTTGG+AGG + chr1_3:71686533-71686552 None:intergenic 55.0%
!!! TCGGACTTTTTCGAAGGCGG+TGG + chr1_3:71686541-71686560 None:intergenic 55.0%
! CGGGATCGGTTCCGTATAGT+CGG + chr1_3:71686560-71686579 None:intergenic 55.0%
CGAAACTTGGATCGGAAGCG+AGG + chr1_3:71686653-71686672 None:intergenic 55.0%
! GAGGACGTTGGTGGAAATCC+AGG + chr1_3:71686682-71686701 None:intergenic 55.0%
GGGATAGTAAGGGAGGACGT+TGG + chr1_3:71686694-71686713 None:intergenic 55.0%
GACCGGCATTCGGTTGGAAA+AGG + chr1_3:71687052-71687071 None:intergenic 55.0%
TTTCCAACCGAATGCCGGTC+GGG - chr1_3:71687052-71687071 Msa0138580:CDS 55.0%
GAGATTGTGGTTGCGGAGAC+AGG - chr1_3:71687359-71687378 Msa0138580:CDS 55.0%
! GAGACAGGGTGGCCTTACAA+AGG - chr1_3:71687374-71687393 Msa0138580:CDS 55.0%
GTGTCCCAACCTTAGATCGC+AGG + chr1_3:71687466-71687485 None:intergenic 55.0%
TTGGGACACCACTGATGCCA+GGG - chr1_3:71687477-71687496 Msa0138580:CDS 55.0%
GCTTTCTCAGAACCAGCTCC+AGG + chr1_3:71687551-71687570 None:intergenic 55.0%
ACGGGGCTACTAGTAGGTGT+AGG + chr1_3:71687644-71687663 None:intergenic 55.0%
TACACCTACTAGTAGCCCCG+TGG - chr1_3:71687643-71687662 Msa0138580:CDS 55.0%
GATACCACGGGGCTACTAGT+AGG + chr1_3:71687650-71687669 None:intergenic 55.0%
TAGTAGCCCCGTGGTATCTC+CGG - chr1_3:71687652-71687671 Msa0138580:CDS 55.0%
!! CCTGTTGGTGCTGGAATCAC+TGG + chr1_3:71687875-71687894 None:intergenic 55.0%
CCAGTGATTCCAGCACCAAC+AGG - chr1_3:71687872-71687891 Msa0138580:intron 55.0%
GGTGTAGAACTTGGGCCTGT+TGG + chr1_3:71687890-71687909 None:intergenic 55.0%
GCATGGTGTGTGCCAAAAGC+AGG - chr1_3:71688117-71688136 Msa0138580:intron 55.0%
AGTGGTGTCTGTGCAGAGGA+GGG - chr1_3:71689106-71689125 Msa0138580:intron 55.0%
AAACTGGGCCAAGGCTAGGG+TGG - chr1_3:71685267-71685286 Msa0138580:intron 60.0%
AACTGGGCCAAGGCTAGGGT+GGG - chr1_3:71685268-71685287 Msa0138580:intron 60.0%
AAGCTCTCCCACCCTAGCCT+TGG + chr1_3:71685278-71685297 None:intergenic 60.0%
GTGGAAGGTTGTCGGCGACT+TGG + chr1_3:71686488-71686507 None:intergenic 60.0%
!!! AGTTTTGCGGTGGCGGATGC+TGG + chr1_3:71686510-71686529 None:intergenic 60.0%
TCCCTCGCCAACACCGGAAT+CGG - chr1_3:71686591-71686610 Msa0138580:CDS 60.0%
!! TCCGATTCCGGTGTTGGCGA+GGG + chr1_3:71686595-71686614 None:intergenic 60.0%
!! TTCCGATTCCGGTGTTGGCG+AGG + chr1_3:71686596-71686615 None:intergenic 60.0%
! GGAGGGTATGTCGCCGTTTG+CGG + chr1_3:71686631-71686650 None:intergenic 60.0%
CTTGGATCGGAAGCGAGGGA+GGG + chr1_3:71686648-71686667 None:intergenic 60.0%
ACTTGGATCGGAAGCGAGGG+AGG + chr1_3:71686649-71686668 None:intergenic 60.0%
TGCTGGCGGGATAGTAAGGG+AGG + chr1_3:71686701-71686720 None:intergenic 60.0%
CTTCGTTGCCGACGGTGATG+AGG + chr1_3:71686731-71686750 None:intergenic 60.0%
AACTCGGAGCCACCTTCTGC+TGG - chr1_3:71686885-71686904 Msa0138580:intron 60.0%
GCATCAACCCGACCGGCATT+CGG + chr1_3:71687062-71687081 None:intergenic 60.0%
TTGTGGTTGCGGAGACAGGG+TGG - chr1_3:71687363-71687382 Msa0138580:CDS 60.0%
GTTGGGACACCACTGATGCC+AGG - chr1_3:71687476-71687495 Msa0138580:CDS 60.0%
GAGGACTTGAAGCCTGGAGC+TGG - chr1_3:71687536-71687555 Msa0138580:CDS 60.0%
GAACTTGGGCCTGTTGGTGC+TGG + chr1_3:71687884-71687903 None:intergenic 60.0%
GAGTGGTGTCTGTGCAGAGG+AGG - chr1_3:71689105-71689124 Msa0138580:intron 60.0%
!! TTTGCGGTGGCGGATGCTGG+TGG + chr1_3:71686507-71686526 None:intergenic 65.0%
CAACCCGACCGGCATTCGGT+TGG + chr1_3:71687058-71687077 None:intergenic 65.0%
!! CGGTGGCGGATGCTGGTGGA+AGG + chr1_3:71686503-71686522 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 71684870 71689278 71684870 ID=Msa0138580;Name=Msa0138580
chr1_3 mRNA 71684870 71689278 71684870 ID=Msa0138580-mRNA-1;Parent=Msa0138580;Name=Msa0138580-mRNA-1;_AED=0.11;_eAED=0.11;_QI=30|1|1|1|1|1|5|299|479
chr1_3 exon 71684870 71685206 71684870 ID=Msa0138580-mRNA-1:exon:24939;Parent=Msa0138580-mRNA-1
chr1_3 exon 71685797 71686112 71685797 ID=Msa0138580-mRNA-1:exon:24938;Parent=Msa0138580-mRNA-1
chr1_3 exon 71686475 71686837 71686475 ID=Msa0138580-mRNA-1:exon:24937;Parent=Msa0138580-mRNA-1
chr1_3 exon 71687027 71687694 71687027 ID=Msa0138580-mRNA-1:exon:24936;Parent=Msa0138580-mRNA-1
chr1_3 exon 71689194 71689278 71689194 ID=Msa0138580-mRNA-1:exon:24935;Parent=Msa0138580-mRNA-1
chr1_3 five_prime_UTR 71689249 71689278 71689249 ID=Msa0138580-mRNA-1:five_prime_utr;Parent=Msa0138580-mRNA-1
chr1_3 CDS 71689194 71689248 71689194 ID=Msa0138580-mRNA-1:cds;Parent=Msa0138580-mRNA-1
chr1_3 CDS 71687027 71687694 71687027 ID=Msa0138580-mRNA-1:cds;Parent=Msa0138580-mRNA-1
chr1_3 CDS 71686475 71686837 71686475 ID=Msa0138580-mRNA-1:cds;Parent=Msa0138580-mRNA-1
chr1_3 CDS 71685797 71686112 71685797 ID=Msa0138580-mRNA-1:cds;Parent=Msa0138580-mRNA-1
chr1_3 CDS 71685169 71685206 71685169 ID=Msa0138580-mRNA-1:cds;Parent=Msa0138580-mRNA-1
chr1_3 three_prime_UTR 71684870 71685168 71684870 ID=Msa0138580-mRNA-1:three_prime_utr;Parent=Msa0138580-mRNA-1
Gene Sequence

>Msa0138580

ATGACAAGAATGGTTTCTGGCTTTCTTCTACTCTTTCTCGCATTCAACCTTGCAAAATCTGACCCATTCCTCGGAGTAAACTATGGCCAAGTCGCCGACAACCTTCCACCAGCATCCGCCACCGCAAAACTCCTCCAAACCACCGCCTTCGAAAAAGTCCGACTATACGGAACCGATCCCGCCATAATCAAATCCCTCGCCAACACCGGAATCGGAATCGTAATCGGAGCCGCAAACGGCGACATACCCTCCCTCGCTTCCGATCCAAGTTTCGCCAAAACCTGGATTTCCACCAACGTCCTCCCTTACTATCCCGCCAGCAACATCATCCTCATCACCGTCGGCAACGAAGTCATCACTTCAAATGATACAAATCTTATTAACGGAATGTTACCAGCTATACAGAACATGCAAAAAGCGCTTGATGAAGCTTCTCTTGGTGGTAAAATTAGGGTTTCTACGGTTCATACGATGTCGGTTTTGAAAAACTCGGAGCCACCTTCTGCTGGAAGTTTTCATGACGAATATAGTACCGTTTTGCAGGGTTTGTTGTCGTTTAATAAGGATACTGGTTCCCCTTTTGCTATTAATCCTTATCCTTATTTTGCTTATAAAAGTGATCCTGGAAGGGCTGATAATTTGGCTTTTTGCCTTTTCCAACCGAATGCCGGTCGGGTTGATGCAAATACTAAGCTCAATTACATGAATATGTTTGATGCTCAGGTGGATGCTGTTAGATCTGCACTAGATTCTATGGGTTTTAAGGATGTTGAGATTGTGGTTGCGGAGACAGGGTGGCCTTACAAAGGAGATAACGACGAGGCTGGACCGAGTATTGAGAATGCAAAGGCTTACAATGGTAATCTGATTAAGCACCTGCGATCTAAGGTTGGGACACCACTGATGCCAGGGAAATCAGTGGACACATACATCTTTGCCTTGTATGATGAGGACTTGAAGCCTGGAGCTGGTTCTGAGAAAGCCTTCGGGCTTTACAACACTGATCAAACGATGATCTATGACGCTGGCCTCTCTAAGCAACAAAGCACTACTCCTACACCTACTAGTAGCCCCGTGGTATCTCCGATTAATCAAGATGTGTCAAAATCTCCTATGAATTCAACGCCAAAAGTTCCAAGTCCAACAACGCCGTATAATAGTAACATAGCATGGTGTGTGCCAAAAGCAGGATTAACTGATGTGCAACTACAAGCAAATTTGGATTATGCTTGTGGGCAGGGGATTGATTGTAGCTTAATCCAACCAGGAGGTGCTTGTTTTGAACCTAACACATTAGCTAACCATGCTGCATACGCCATGAATCTCTTCTATCACACTGTTGGGCAAAATCCATTAACTTGTGATTTTTCACAAACAGCTACACTAACATCAAATAACCCAAGTTATAATAGTTGTATTTATACTGGAGGGAATGCATAA
Protein sequence

>Msa0138580

MTRMVSGFLLLFLAFNLAKSDPFLGVNYGQVADNLPPASATAKLLQTTAFEKVRLYGTDPAIIKSLANTGIGIVIGAANGDIPSLASDPSFAKTWISTNVLPYYPASNIILITVGNEVITSNDTNLINGMLPAIQNMQKALDEASLGGKIRVSTVHTMSVLKNSEPPSAGSFHDEYSTVLQGLLSFNKDTGSPFAINPYPYFAYKSDPGRADNLAFCLFQPNAGRVDANTKLNYMNMFDAQVDAVRSALDSMGFKDVEIVVAETGWPYKGDNDEAGPSIENAKAYNGNLIKHLRSKVGTPLMPGKSVDTYIFALYDEDLKPGAGSEKAFGLYNTDQTMIYDAGLSKQQSTTPTPTSSPVVSPINQDVSKSPMNSTPKVPSPTTPYNSNIAWCVPKAGLTDVQLQANLDYACGQGIDCSLIQPGGACFEPNTLANHAAYAMNLFYHTVGQNPLTCDFSQTATLTSNNPSYNSCIYTGGNA*