AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145850 MtrunA17_Chr1g0155001 89.062 384 20 3 1 368 1 378 0.0 638
Msa0145850 MtrunA17_Chr3g0144531 61.684 475 138 6 8 462 8 458 0.0 584
Msa0145850 MtrunA17_Chr4g0034901 61.620 469 142 6 10 461 15 462 0.0 579
Msa0145850 MtrunA17_Chr7g0223961 38.581 451 232 8 24 456 23 446 2.95e-113 340
Msa0145850 MtrunA17_Chr4g0043511 40.305 459 233 11 24 458 62 503 2.23e-107 329
Msa0145850 MtrunA17_Chr6g0487261 35.699 479 260 9 4 462 10 460 1.36e-101 313
Msa0145850 MtrunA17_Chr8g0389741 35.526 456 250 7 20 458 24 452 2.34e-99 306
Msa0145850 MtrunA17_Chr1g0177171 36.344 465 260 9 24 461 38 493 2.07e-97 301
Msa0145850 MtrunA17_Chr1g0189111 44.099 322 161 4 24 329 31 349 9.07e-91 282
Msa0145850 MtrunA17_Chr1g0146831 43.284 335 166 5 9 325 16 344 4.12e-90 279
Msa0145850 MtrunA17_Chr5g0439251 34.868 456 260 8 24 457 25 465 2.55e-88 278
Msa0145850 MtrunA17_Chr4g0043851 43.168 322 165 3 24 329 32 351 3.70e-87 272
Msa0145850 MtrunA17_Chr2g0321511 40.751 346 174 6 9 331 11 348 1.04e-86 270
Msa0145850 MtrunA17_Chr3g0110371 33.750 480 262 6 4 460 1 447 1.74e-86 273
Msa0145850 MtrunA17_Chr8g0339191 34.719 481 260 12 4 458 6 458 4.97e-86 271
Msa0145850 MtrunA17_Chr4g0026321 40.237 338 184 3 24 345 29 364 1.45e-85 267
Msa0145850 MtrunA17_Chr4g0046311 32.906 468 268 11 8 452 7 451 4.98e-85 269
Msa0145850 MtrunA17_Chr5g0434591 34.238 479 260 6 4 460 1 446 1.84e-84 268
Msa0145850 MtrunA17_Chr7g0234821 34.354 457 252 10 25 458 27 458 2.42e-84 267
Msa0145850 MtrunA17_Chr3g0121271 32.777 479 270 7 1 460 3 448 7.03e-84 266
Msa0145850 MtrunA17_Chr2g0285901 41.420 338 176 6 9 328 8 341 2.94e-81 256
Msa0145850 MtrunA17_Chr4g0003281 39.210 329 183 2 25 337 41 368 3.45e-81 256
Msa0145850 MtrunA17_Chr8g0378621 31.875 480 275 6 1 460 3 450 1.49e-77 250
Msa0145850 MtrunA17_Chr1g0161011 31.875 480 271 6 4 460 1 447 2.35e-77 249
Msa0145850 MtrunA17_Chr4g0075031 33.624 458 253 7 22 460 43 468 2.50e-77 250
Msa0145850 MtrunA17_Chr1g0154991 100.000 108 0 0 356 463 1 108 2.22e-74 229
Msa0145850 MtrunA17_Chr3g0119541 39.233 339 181 6 24 340 26 361 1.17e-73 236
Msa0145850 MtrunA17_Chr4g0064021 36.250 320 187 2 25 328 27 345 2.68e-72 233
Msa0145850 MtrunA17_Chr4g0039021 39.298 285 157 5 44 317 1 280 1.83e-58 194
Msa0145850 MtrunA17_Chr7g0250301 36.190 315 179 6 24 324 8 314 2.09e-58 195
Msa0145850 MtrunA17_Chr4g0039011 35.962 317 183 7 24 329 42 349 1.95e-57 194
Msa0145850 MtrunA17_Chr4g0038981 35.542 332 190 9 4 324 6 324 2.80e-57 192
Msa0145850 MtrunA17_Chr2g0294601 34.402 343 200 9 8 333 42 376 4.73e-55 188
Msa0145850 MtrunA17_Chr4g0039071 36.050 319 182 5 24 327 25 336 3.41e-54 186
Msa0145850 MtrunA17_Chr4g0038971 34.043 329 193 8 4 321 6 321 5.49e-54 183
Msa0145850 MtrunA17_Chr4g0038961 34.940 332 192 10 4 324 6 324 3.25e-53 181
Msa0145850 MtrunA17_Chr4g0038941 35.185 324 186 8 13 325 44 354 2.01e-52 180
Msa0145850 MtrunA17_Chr3g0129341 29.004 462 273 19 18 458 28 455 1.80e-50 178
Msa0145850 MtrunA17_Chr1g0174261 36.458 288 161 6 53 325 1 281 8.98e-50 173
Msa0145850 MtrunA17_Chr2g0294591 32.378 349 211 9 16 347 22 362 1.09e-49 173
Msa0145850 MtrunA17_Chr4g0062771 28.151 476 279 16 9 456 14 454 1.69e-49 176
Msa0145850 MtrunA17_Chr4g0069801 28.361 476 278 16 3 452 5 443 3.87e-49 175
Msa0145850 MtrunA17_Chr2g0290821 28.602 465 274 15 20 461 24 453 5.85e-47 169
Msa0145850 MtrunA17_Chr2g0306311 27.038 503 281 17 5 456 12 479 7.14e-47 169
Msa0145850 MtrunA17_Chr3g0138741 28.330 473 283 16 8 458 16 454 5.31e-46 166
Msa0145850 MtrunA17_Chr7g0253091 29.284 461 260 18 24 456 26 448 9.06e-46 166
Msa0145850 MtrunA17_Chr1g0148391 28.261 460 268 15 24 458 26 448 3.90e-45 164
Msa0145850 MtrunA17_Chr8g0383311 26.709 468 281 15 22 461 41 474 1.33e-43 160
Msa0145850 MtrunA17_Chr7g0250321 34.256 289 167 6 3 275 5 286 1.54e-43 155
Msa0145850 MtrunA17_Chr6g0461601 27.922 462 268 16 24 456 26 451 7.37e-43 157
Msa0145850 MtrunA17_Chr4g0076581 27.459 488 289 16 3 461 8 459 1.14e-39 149
Msa0145850 MtrunA17_Chr5g0436361 33.779 299 173 7 45 325 58 349 4.24e-37 139
Msa0145850 MtrunA17_Chr3g0105981 27.416 445 267 14 16 440 19 427 1.33e-35 137
Msa0145850 MtrunA17_Chr8g0381081 44.898 98 53 1 363 459 45 142 3.52e-24 99.0
Msa0145850 MtrunA17_Chr8g0378381 50.000 84 42 0 375 458 32 115 9.74e-23 93.2
Msa0145850 MtrunA17_Chr8g0378361 48.235 85 44 0 374 458 29 113 1.31e-22 95.1
Msa0145850 MtrunA17_Chr8g0378401 48.235 85 44 0 375 459 32 116 3.27e-21 89.0
Msa0145850 MtrunA17_Chr3g0096451 39.535 129 68 5 336 458 71 195 4.03e-21 92.8
Msa0145850 MtrunA17_Chr5g0443331 42.373 118 49 4 357 458 77 191 3.95e-20 90.1
Msa0145850 MtrunA17_Chr8g0378371 46.429 84 42 1 375 458 33 113 6.13e-20 85.1
Msa0145850 MtrunA17_Chr2g0294581 29.187 209 128 6 24 222 76 274 9.11e-20 89.4
Msa0145850 MtrunA17_Chr3g0120401 45.238 84 46 0 375 458 157 240 1.13e-19 88.2
Msa0145850 MtrunA17_Chr4g0061401 44.681 94 51 1 365 458 14 106 3.41e-19 86.3
Msa0145850 MtrunA17_Chr7g0271411 49.425 87 38 3 375 458 160 243 7.10e-19 87.0
Msa0145850 MtrunA17_Chr2g0304061 45.882 85 45 1 375 459 158 241 9.39e-19 87.0
Msa0145850 MtrunA17_Chr1g0193131 50.633 79 38 1 374 452 419 496 1.64e-18 88.6
Msa0145850 MtrunA17_Chr5g0419121 44.681 94 50 1 367 458 14 107 7.52e-18 83.2
Msa0145850 MtrunA17_Chr1g0213651 42.857 84 48 0 375 458 276 359 8.25e-18 84.7
Msa0145850 MtrunA17_Chr4g0018771 33.333 138 80 5 210 345 69 196 3.63e-17 80.5
Msa0145850 MtrunA17_Chr4g0018861 33.813 139 80 5 210 345 65 194 6.59e-17 79.7
Msa0145850 MtrunA17_Chr2g0313891 40.449 89 52 1 370 458 25 112 9.31e-17 76.3
Msa0145850 MtrunA17_Chr5g0447651 43.529 85 47 1 375 458 30 114 6.72e-16 73.9
Msa0145850 MtrunA17_Chr8g0380231 55.072 69 25 3 387 452 29 94 1.09e-15 72.8
Msa0145850 MtrunA17_Chr4g0040911 43.182 88 49 1 375 461 37 124 2.14e-15 74.3
Msa0145850 MtrunA17_Chr4g0043151 42.222 90 51 1 370 458 16 105 4.32e-15 73.6
Msa0145850 MtrunA17_Chr5g0401301 43.023 86 47 2 375 458 329 414 2.01e-14 75.1
Msa0145850 MtrunA17_Chr4g0076141 37.037 81 50 1 373 452 11 91 6.40e-13 64.7
Msa0145850 MtrunA17_Chr4g0076131 33.333 87 57 1 373 458 26 112 9.62e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145850 AT4G34480.1 61.752 468 133 5 8 458 9 447 0.0 566
Msa0145850 AT2G16230.1 60.398 452 137 4 23 458 24 449 0.0 548
Msa0145850 AT5G42720.1 56.440 427 143 9 1 395 1 416 2.66e-160 461
Msa0145850 AT4G34480.2 66.667 345 97 3 8 335 9 352 1.74e-158 453
Msa0145850 AT4G34480.3 59.178 365 104 4 110 458 1 336 4.76e-144 417
Msa0145850 AT5G24318.1 43.231 458 213 9 20 458 26 455 9.84e-127 376
Msa0145850 AT5G24318.2 43.172 454 211 9 20 454 26 451 9.81e-125 370
Msa0145850 AT3G55430.1 35.746 456 237 14 24 458 29 449 1.92e-97 300
Msa0145850 AT5G55180.1 35.590 458 254 6 23 462 26 460 5.96e-97 300
Msa0145850 AT2G05790.1 35.853 463 256 10 24 461 25 471 4.82e-95 295
Msa0145850 AT5G55180.2 35.938 448 246 6 23 452 26 450 8.63e-95 294
Msa0145850 AT4G29360.1 35.760 467 277 6 9 458 15 475 3.82e-94 295
Msa0145850 AT4G26830.1 34.038 473 268 7 8 462 9 455 6.44e-94 291
Msa0145850 AT5G24318.4 44.377 329 159 5 20 330 26 348 8.58e-94 288
Msa0145850 AT4G26830.2 34.498 458 256 7 23 462 28 459 2.86e-93 290
Msa0145850 AT4G29360.2 35.579 475 277 7 9 458 15 485 5.62e-93 292
Msa0145850 AT5G56590.1 34.423 459 256 7 24 462 26 459 4.42e-91 286
Msa0145850 AT1G32860.1 45.679 324 156 4 24 329 29 350 5.45e-91 283
Msa0145850 AT1G30080.2 45.000 320 158 3 24 327 36 353 1.76e-90 280
Msa0145850 AT2G39640.1 33.473 478 258 9 1 456 1 440 2.50e-90 285
Msa0145850 AT2G39640.1 42.169 83 48 0 375 457 460 542 1.70e-18 88.6
Msa0145850 AT1G30080.1 45.000 320 158 3 24 327 36 353 3.92e-90 280
Msa0145850 AT2G01630.1 34.565 460 248 5 21 460 20 446 2.91e-88 278
Msa0145850 AT5G24318.3 42.274 343 153 7 134 458 1 316 3.39e-88 272
Msa0145850 AT2G01630.3 34.735 452 242 5 21 452 20 438 1.49e-86 272
Msa0145850 AT1G11820.2 33.983 462 248 6 21 460 41 467 3.99e-86 273
Msa0145850 AT4G18340.2 42.000 350 183 4 4 335 12 359 2.51e-84 265
Msa0145850 AT4G18340.1 42.000 350 183 4 4 335 12 359 4.33e-84 264
Msa0145850 AT1G11820.3 33.700 454 244 6 21 452 41 459 1.26e-82 263
Msa0145850 AT2G27500.2 39.252 321 178 2 24 328 29 348 1.70e-82 259
Msa0145850 AT1G66250.1 33.909 463 252 7 18 460 26 454 2.63e-82 263
Msa0145850 AT2G27500.1 39.130 322 179 2 24 329 29 349 5.49e-82 259
Msa0145850 AT3G07320.1 33.553 456 255 9 25 458 26 455 7.65e-80 255
Msa0145850 AT5G42100.2 41.667 324 168 5 24 328 27 348 4.35e-79 252
Msa0145850 AT5G42100.1 41.667 324 168 5 24 328 27 348 6.27e-79 252
Msa0145850 AT4G14080.1 32.604 457 261 11 24 458 42 473 3.56e-78 251
Msa0145850 AT3G13560.4 33.843 458 249 6 23 460 25 448 6.10e-78 252
Msa0145850 AT3G13560.1 33.843 458 249 6 23 460 25 448 6.10e-78 252
Msa0145850 AT3G13560.2 33.843 458 249 6 23 460 25 448 6.10e-78 252
Msa0145850 AT3G13560.5 33.843 458 249 6 23 460 25 448 6.10e-78 252
Msa0145850 AT3G13560.3 33.843 458 249 6 23 460 25 448 6.10e-78 252
Msa0145850 AT3G23770.1 32.751 458 262 11 24 458 37 471 2.06e-77 249
Msa0145850 AT3G15800.1 39.091 330 183 3 25 337 44 372 5.24e-74 238
Msa0145850 AT2G26600.1 35.976 328 193 2 25 336 35 361 1.37e-73 237
Msa0145850 AT2G01630.2 34.257 397 209 4 21 398 20 383 2.90e-69 226
Msa0145850 AT2G27500.3 39.338 272 148 2 74 329 1 271 1.11e-66 216
Msa0145850 AT3G46570.1 38.177 351 187 10 2 330 4 346 9.82e-66 215
Msa0145850 AT3G61810.1 37.982 337 175 7 16 329 47 372 2.31e-64 213
Msa0145850 AT1G11820.1 36.000 325 183 4 21 324 41 361 5.69e-64 212
Msa0145850 AT3G57270.1 38.050 318 173 6 24 325 27 336 4.92e-59 197
Msa0145850 AT4G16260.1 38.312 308 166 7 24 316 24 322 6.18e-58 194
Msa0145850 AT2G26600.2 36.567 268 153 2 85 336 1 267 7.35e-57 190
Msa0145850 AT4G16260.2 37.874 301 163 7 31 316 2 293 3.20e-55 187
Msa0145850 AT1G77780.1 36.795 337 180 10 10 325 7 331 3.66e-53 182
Msa0145850 AT5G20870.1 28.425 489 279 16 3 458 9 459 1.56e-52 184
Msa0145850 AT3G57260.2 34.796 319 178 8 24 326 48 352 2.04e-52 181
Msa0145850 AT3G57260.1 34.796 319 178 8 24 326 32 336 2.22e-52 180
Msa0145850 AT4G31140.1 29.202 476 274 17 8 458 11 448 1.39e-51 182
Msa0145850 AT5G20390.1 35.220 318 180 8 24 324 33 341 2.13e-51 177
Msa0145850 AT5G20340.1 34.796 319 182 8 24 325 43 352 9.07e-49 171
Msa0145850 AT3G24330.1 29.348 460 262 18 24 456 39 462 2.63e-47 171
Msa0145850 AT5G20330.1 35.016 317 182 9 24 324 34 342 1.86e-46 164
Msa0145850 AT3G57240.1 35.048 311 167 12 24 316 35 328 5.28e-45 160
Msa0145850 AT1G77790.1 33.333 315 185 7 28 325 34 340 6.12e-44 157
Msa0145850 AT1G33220.1 33.224 304 179 6 24 311 34 329 1.17e-43 157
Msa0145850 AT5G64790.1 26.407 462 275 16 24 458 28 451 1.31e-43 160
Msa0145850 AT2G19440.2 29.348 460 260 19 24 456 21 442 1.89e-42 157
Msa0145850 AT2G19440.1 29.348 460 260 19 24 456 21 442 1.89e-42 157
Msa0145850 AT5G58090.1 26.580 459 278 15 24 458 22 445 2.01e-42 157
Msa0145850 AT1G64760.1 28.986 483 276 20 1 456 4 446 3.01e-42 156
Msa0145850 AT1G64760.2 28.986 483 276 20 1 456 4 446 3.01e-42 156
Msa0145850 AT5G18220.1 27.692 455 276 15 24 456 30 453 4.20e-41 153
Msa0145850 AT5G58480.1 27.948 458 270 15 24 459 26 445 1.24e-40 152
Msa0145850 AT5G20560.1 32.903 310 184 7 24 317 34 335 1.73e-40 148
Msa0145850 AT4G17180.1 26.957 460 273 16 24 461 25 443 1.38e-39 149
Msa0145850 AT3G04010.1 26.039 457 280 14 24 456 33 455 1.31e-38 146
Msa0145850 AT3G55780.1 32.886 298 172 9 53 329 64 354 1.17e-36 139
Msa0145850 AT4G09462.1 48.810 84 43 0 375 458 29 112 1.02e-25 101
Msa0145850 AT4G09465.1 47.619 84 44 0 375 458 31 114 2.96e-25 100
Msa0145850 AT4G09464.1 47.619 84 44 0 375 458 31 114 3.28e-25 100
Msa0145850 AT4G09467.1 47.619 84 44 0 375 458 31 114 3.28e-25 100
Msa0145850 AT4G09466.1 47.619 84 44 0 375 458 31 114 8.94e-25 99.0
Msa0145850 AT4G05430.1 45.361 97 52 1 363 458 11 107 1.60e-24 99.4
Msa0145850 AT5G63230.1 47.619 84 44 0 375 458 26 109 1.97e-24 97.8
Msa0145850 AT1G66855.1 48.837 86 43 1 375 459 26 111 2.63e-24 97.4
Msa0145850 AT4G05430.3 45.361 97 52 1 363 458 36 132 4.49e-24 99.0
Msa0145850 AT1G18650.1 48.315 89 46 0 370 458 16 104 7.85e-24 98.6
Msa0145850 AT1G66870.1 46.512 86 45 1 375 459 26 111 1.06e-23 95.9
Msa0145850 AT1G18650.2 49.425 87 44 0 370 456 16 102 1.24e-23 96.3
Msa0145850 AT1G66870.2 46.512 86 45 1 375 459 53 138 1.43e-23 96.7
Msa0145850 AT5G63225.1 47.253 91 48 0 368 458 18 108 1.95e-23 95.1
Msa0145850 AT4G09090.1 41.573 89 52 0 371 459 27 115 2.76e-23 95.1
Msa0145850 AT5G61130.1 47.191 89 47 0 370 458 16 104 8.03e-23 96.3
Msa0145850 AT5G67460.1 26.786 392 212 14 77 458 51 377 1.07e-22 99.8
Msa0145850 AT5G63250.1 44.828 87 45 1 375 458 42 128 3.34e-22 92.4
Msa0145850 AT4G13600.1 47.619 84 44 0 375 458 61 144 3.52e-22 95.5
Msa0145850 AT5G63240.1 41.441 111 60 2 351 458 18 126 4.39e-22 92.0
Msa0145850 AT4G05430.2 45.055 91 49 1 363 452 36 126 1.57e-21 90.5
Msa0145850 AT4G16165.1 45.349 86 46 1 375 459 26 111 1.89e-20 87.0
Msa0145850 AT5G67460.2 26.943 386 207 14 77 452 51 371 2.17e-20 93.2
Msa0145850 AT1G66852.1 44.186 86 46 2 375 459 26 110 5.61e-20 85.5
Msa0145850 AT2G29735.1 48.837 86 42 1 375 458 31 116 2.62e-19 84.0
Msa0145850 AT2G43670.1 40.476 84 49 1 375 458 35 117 5.26e-19 83.2
Msa0145850 AT5G08000.1 46.067 89 48 0 370 458 16 104 9.96e-19 84.7
Msa0145850 AT5G08000.2 48.235 85 44 0 374 458 39 123 2.40e-18 84.0
Msa0145850 AT1G09460.1 45.361 97 51 2 367 463 129 223 3.87e-18 85.9
Msa0145850 AT5G53600.1 42.857 84 47 1 375 458 29 111 5.69e-18 79.7
Msa0145850 AT1G78520.1 41.667 84 48 1 375 458 32 114 3.52e-17 77.8
Msa0145850 AT2G30933.1 44.086 93 46 3 369 458 76 165 3.83e-17 80.9
Msa0145850 AT2G30933.2 40.909 110 54 5 350 452 54 159 1.62e-16 77.4
Msa0145850 AT2G30933.3 40.909 110 54 5 350 452 54 159 1.62e-16 77.4
Msa0145850 AT1G29380.3 45.455 88 42 3 375 459 148 232 3.75e-16 78.6
Msa0145850 AT1G79480.1 40.476 84 50 0 375 458 311 394 3.97e-16 80.5
Msa0145850 AT1G79480.2 40.476 84 50 0 375 458 310 393 4.05e-16 80.5
Msa0145850 AT1G69295.1 46.341 82 43 1 371 452 17 97 4.63e-16 77.8
Msa0145850 AT1G29380.1 45.977 87 41 3 375 458 148 231 4.78e-16 79.3
Msa0145850 AT2G04910.2 41.176 85 49 1 375 458 15 99 7.87e-16 73.6
Msa0145850 AT1G13830.1 41.860 86 48 1 375 458 21 106 9.46e-16 76.3
Msa0145850 AT5G53610.1 42.683 82 46 1 375 456 28 108 1.05e-15 73.6
Msa0145850 AT1G13830.2 41.860 86 48 1 375 458 35 120 1.21e-15 76.3
Msa0145850 AT1G29380.4 46.429 84 39 3 375 455 148 228 2.95e-15 75.5
Msa0145850 AT1G29380.2 46.429 84 39 3 375 455 148 228 2.95e-15 75.5
Msa0145850 AT1G69295.2 45.570 79 42 1 374 452 16 93 6.60e-15 74.3
Msa0145850 AT5G35740.1 41.860 86 48 2 375 458 30 115 8.12e-15 71.2
Msa0145850 AT2G43660.1 38.372 86 52 1 374 458 33 118 9.20e-15 71.2
Msa0145850 AT2G43660.2 38.372 86 52 1 374 458 34 119 9.26e-15 71.2
Msa0145850 AT2G03505.4 37.778 90 54 1 371 458 17 106 1.55e-14 72.0
Msa0145850 AT2G03505.1 37.778 90 54 1 371 458 17 106 1.55e-14 72.0
Msa0145850 AT2G03505.2 37.778 90 54 1 371 458 17 106 1.55e-14 72.0
Msa0145850 AT2G03505.3 37.778 90 54 1 371 458 17 106 1.59e-14 70.5
Msa0145850 AT3G28250.1 38.750 80 48 1 373 452 1 79 2.69e-14 69.7
Msa0145850 AT3G58100.1 41.176 85 49 1 375 458 41 125 5.82e-14 70.5
Msa0145850 AT1G26450.1 44.737 76 41 1 371 446 17 91 8.39e-14 70.5
Msa0145850 AT2G04910.1 41.772 79 45 1 375 452 15 93 9.32e-14 68.2
Msa0145850 AT3G58100.2 41.176 85 49 1 375 458 117 201 1.88e-13 70.9

Find 142 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTGGTGGTAAAATT+AGG 0.082325 1_4:+5596265 Msa0145850:CDS
TGTGCAACTACAAGCAAATT+TGG 0.210617 1_4:+5597593 Msa0145850:CDS
TAGATCTGCACTAGATTCTA+TGG 0.240384 1_4:+5596766 Msa0145850:CDS
TCCTGGAAGGGCTGATAATT+TGG 0.251824 1_4:+5596455 Msa0145850:CDS
GGGTTTGTTGTCGTTTAATA+AGG 0.272334 1_4:+5596377 Msa0145850:CDS
AACATGACAAGAATGGTTTC+TGG 0.284683 1_4:+5594325 Msa0145850:exon
TCCGATTACGATTCCGATTC+CGG 0.307053 1_4:-5596040 None:intergenic
TTCTCTTGGTGGTAAAATTA+GGG 0.311256 1_4:+5596266 Msa0145850:CDS
GTTGGCGAGGGATTTGATTA+TGG 0.311492 1_4:-5596016 None:intergenic
TTGTCGTTTAATAAGGATAC+TGG 0.317569 1_4:+5596384 Msa0145850:CDS
TATAATAGTTGTATTTATAC+TGG 0.317977 1_4:+5598388 Msa0145850:CDS
GACCGGCATTAGGTTGAAAA+AGG 0.325112 1_4:-5596485 None:intergenic
CATGCTATGTTACTATTATA+CGG 0.335966 1_4:-5597543 None:intergenic
ACATCAGTTAATCCTGCTTT+TGG 0.340038 1_4:-5597573 None:intergenic
GATTAAGCACCTGCGATCTA+AGG 0.346796 1_4:+5596898 Msa0145850:CDS
GTTGTTGGACTTGGAACTTT+TGG 0.356417 1_4:-5597519 None:intergenic
GTTGGTGGAAATCCAGGTTT+TGG 0.362874 1_4:-5596109 None:intergenic
GCATCAACTCGACCGGCATT+AGG 0.367245 1_4:-5596495 None:intergenic
AATGATACAAATCTTATTAA+CGG 0.369125 1_4:+5596198 Msa0145850:CDS
GCATGGTTAGCTAATGTGTT+AGG 0.371637 1_4:-5597678 None:intergenic
TTACTATTATACGGCGTTGT+TGG 0.396054 1_4:-5597534 None:intergenic
GCTGGTTCTGAGAAAGCCTT+CGG 0.400618 1_4:+5596998 Msa0145850:CDS
CCATTCCTCGGAGTAAACTA+TGG 0.408450 1_4:+5595898 Msa0145850:CDS
GGATAAGGATTAATAGCAAA+AGG 0.408820 1_4:-5596411 None:intergenic
GATAAGGATTAATAGCAAAA+GGG 0.410562 1_4:-5596410 None:intergenic
AACTCGGAGCCACCTTCTGC+TGG 0.410697 1_4:+5596321 Msa0145850:CDS
ACCGGAATCGGAATCGTAAT+CGG 0.412511 1_4:+5596039 Msa0145850:CDS
TTATAAGCAAAATAAGGATA+AGG 0.414067 1_4:-5596426 None:intergenic
CTGGTTCTGAGAAAGCCTTC+GGG 0.427029 1_4:+5596999 Msa0145850:CDS
TCCCTCGCCAACACCGGAAT+CGG 0.431599 1_4:+5596027 Msa0145850:CDS
ATGTTGCTGGCGGGATAGTA+AGG 0.437537 1_4:-5596138 None:intergenic
TTTGCTTATAAAAGTGATCC+TGG 0.441378 1_4:+5596438 Msa0145850:CDS
TACGATTCCGATTCCGGTGT+TGG 0.445725 1_4:-5596034 None:intergenic
ATCCAAGTTTCGCCAAAACC+TGG 0.446819 1_4:+5596097 Msa0145850:CDS
GAGGACGTTGGTGGAAATCC+AGG 0.449002 1_4:-5596115 None:intergenic
TTATACGGCGTTGTTGGACT+TGG 0.451067 1_4:-5597528 None:intergenic
GGATTTGATTATGGCGGGAT+CGG 0.452407 1_4:-5596007 None:intergenic
GCAAATTTGGATTATGCTTG+TGG 0.452527 1_4:+5597606 Msa0145850:CDS
CATTCTTGTCATGTTTACCT+TGG 0.452555 1_4:-5594317 None:intergenic
GCCAAATTATCAGCCCTTCC+AGG 0.454800 1_4:-5596456 None:intergenic
GGAGGGTATGTCGCCGTTTG+CGG 0.457744 1_4:-5596064 None:intergenic
ATCTCTTCTATCACACTGTT+GGG 0.461725 1_4:+5597715 Msa0145850:CDS
GGATGTTGAGATTGTGGTTG+CGG 0.465710 1_4:+5596796 Msa0145850:CDS
ATTCTTGTCATGTTTACCTT+GGG 0.466359 1_4:-5594316 None:intergenic
GCTTTCTCAGAACCAGCTCC+AGG 0.467861 1_4:-5596992 None:intergenic
CAAGGTAAACATGACAAGAA+TGG 0.469473 1_4:+5594318 Msa0145850:exon
TCGTCGTTATCTCCTTTGTA+AGG 0.471777 1_4:-5596830 None:intergenic
TATGATGAGGACTTGAAGCC+TGG 0.475102 1_4:+5596974 Msa0145850:CDS
CTTGATGAAGCTTCTCTTGG+TGG 0.477574 1_4:+5596255 Msa0145850:CDS
GCGCTTGATGAAGCTTCTCT+TGG 0.478524 1_4:+5596252 Msa0145850:CDS
CCATAGTTTACTCCGAGGAA+TGG 0.481901 1_4:-5595898 None:intergenic
TTGGATTATGCTTGTGGGCA+GGG 0.482048 1_4:+5597612 Msa0145850:CDS
GAGATTGTGGTTGCGGAGAC+AGG 0.486438 1_4:+5596803 Msa0145850:CDS
TGGATTATGCTTGTGGGCAG+GGG 0.487006 1_4:+5597613 Msa0145850:CDS
TAGTAGCCCCGTGGTATCTC+CGG 0.488228 1_4:+5597096 Msa0145850:CDS
TTTCGAAGGCGGTGGTTTGG+AGG 0.488710 1_4:-5595966 None:intergenic
CGGTGGCGGATGCTGGTGGA+AGG 0.489604 1_4:-5595936 None:intergenic
CAAATTTGGATTATGCTTGT+GGG 0.491169 1_4:+5597607 Msa0145850:CDS
ATCGTAATCGGAGCCGCAAA+CGG 0.493965 1_4:+5596051 Msa0145850:CDS
TTTGGATTATGCTTGTGGGC+AGG 0.494350 1_4:+5597611 Msa0145850:CDS
GTGGAAGGTTGTCGGCGACT+TGG 0.495042 1_4:-5595921 None:intergenic
TCCGATTCCGGTGTTGGCGA+GGG 0.497776 1_4:-5596028 None:intergenic
CATAGTTTACTCCGAGGAAT+GGG 0.498903 1_4:-5595897 None:intergenic
TGGTAAAATTAGGGTTTCTA+CGG 0.503871 1_4:+5596275 Msa0145850:CDS
GCGAGGGATTTGATTATGGC+GGG 0.506513 1_4:-5596012 None:intergenic
AATCTCTTCTATCACACTGT+TGG 0.507292 1_4:+5597714 Msa0145850:CDS
GGATGCTGGTGGAAGGTTGT+CGG 0.507464 1_4:-5595929 None:intergenic
AGCACCTGCGATCTAAGGTT+GGG 0.513066 1_4:+5596903 Msa0145850:CDS
GCATGGTGTGTGCCAAAAGC+AGG 0.513211 1_4:+5597561 Msa0145850:CDS
AGATCTGCACTAGATTCTAT+GGG 0.515532 1_4:+5596767 Msa0145850:CDS
GAGGACTTGAAGCCTGGAGC+TGG 0.515732 1_4:+5596980 Msa0145850:CDS
ACTGATTTCCCTGGCATCAG+TGG 0.516517 1_4:-5596929 None:intergenic
GGTGATGAGGATGATGTTGC+TGG 0.516557 1_4:-5596151 None:intergenic
GCCTTTGCATTCTCAATACT+CGG 0.519040 1_4:-5596860 None:intergenic
GTTGGGACACCACTGATGCC+AGG 0.519883 1_4:+5596920 Msa0145850:CDS
TTCCGATTCCGGTGTTGGCG+AGG 0.525201 1_4:-5596029 None:intergenic
AAAGGAGATAACGACGAGGC+TGG 0.525920 1_4:+5596836 Msa0145850:CDS
GGTTCAAAACAAGCACCTCC+TGG 0.528280 1_4:-5597657 None:intergenic
ATCAAATCCCTCGCCAACAC+CGG 0.533535 1_4:+5596021 Msa0145850:CDS
CTTATAAAAGTGATCCTGGA+AGG 0.535941 1_4:+5596442 Msa0145850:CDS
GGCGAGGGATTTGATTATGG+CGG 0.537617 1_4:-5596013 None:intergenic
CTTCAAGTCCTCATCATACA+AGG 0.538927 1_4:-5596969 None:intergenic
CGACAACAAACCCTGCAAAA+CGG 0.539250 1_4:-5596367 None:intergenic
AGTATTTGCATCAACTCGAC+CGG 0.541663 1_4:-5596502 None:intergenic
ATAGTAAGGGAGGACGTTGG+TGG 0.542466 1_4:-5596124 None:intergenic
AAGCACCTGCGATCTAAGGT+TGG 0.545052 1_4:+5596902 Msa0145850:CDS
TGTGAGGAAACTTACTTGCA+AGG 0.552392 1_4:-5594375 None:intergenic
ATAGTTGTATTTATACTGGA+GGG 0.553455 1_4:+5598392 Msa0145850:CDS
TAGTGCTTTGTTGCTTAGAG+AGG 0.556972 1_4:-5597060 None:intergenic
AATAGTTGTATTTATACTGG+AGG 0.558577 1_4:+5598391 Msa0145850:CDS
GATACCACGGGGCTACTAGT+AGG 0.558920 1_4:-5597091 None:intergenic
AGTGTGATAGAAGAGATTCA+TGG 0.564034 1_4:-5597709 None:intergenic
ATCAGTGTTGTAAAGCCCGA+AGG 0.564335 1_4:-5597014 None:intergenic
GTGTCCCAACCTTAGATCGC+AGG 0.566462 1_4:-5596907 None:intergenic
CAAAACAAGCACCTCCTGGT+TGG 0.568304 1_4:-5597653 None:intergenic
GAGTGGTGTCTGTGCAGAGG+AGG 0.572883 1_4:+5598549 Msa0145850:three_prime_UTR
ATAAGGATTAATAGCAAAAG+GGG 0.575778 1_4:-5596409 None:intergenic
TATGTGTCCACTGATTTCCC+TGG 0.578850 1_4:-5596938 None:intergenic
TTTGCGGTGGCGGATGCTGG+TGG 0.579027 1_4:-5595940 None:intergenic
ATTATTTGAATAACATAACA+TGG 0.582729 1_4:-5598678 None:intergenic
GCAGAATCTGACCCATTCCT+CGG 0.583867 1_4:+5595886 Msa0145850:intron
CTTCGTTGCCGACGGTGATG+AGG 0.587261 1_4:-5596164 None:intergenic
CAAACGATGATCTATGACGC+TGG 0.587813 1_4:+5597037 Msa0145850:CDS
ACTTGGATCGGAAGCGAGGG+AGG 0.590059 1_4:-5596082 None:intergenic
ATGAGGATGATGTTGCTGGC+GGG 0.593640 1_4:-5596147 None:intergenic
TCATGAAAACTTCCAGCAGA+AGG 0.595377 1_4:-5596333 None:intergenic
CGAAACTTGGATCGGAAGCG+AGG 0.597502 1_4:-5596086 None:intergenic
TTCTACGGTTCATACGATGT+CGG 0.598813 1_4:+5596290 Msa0145850:CDS
TTGGGACACCACTGATGCCA+GGG 0.599886 1_4:+5596921 Msa0145850:CDS
CGTATAATAGTAACATAGCA+TGG 0.600001 1_4:+5597544 Msa0145850:CDS
CATCTTTGCCTTGTATGATG+AGG 0.600659 1_4:+5596961 Msa0145850:CDS
GAAACTTGGATCGGAAGCGA+GGG 0.603669 1_4:-5596085 None:intergenic
CGGGATCGGTTCCGTATAGT+CGG 0.611085 1_4:-5595993 None:intergenic
GCAGTTTCAAAGTCTTCCCA+AGG 0.612888 1_4:+5594300 Msa0145850:five_prime_UTR
AATTCATACCGGAGATACCA+CGG 0.615954 1_4:-5597104 None:intergenic
AGTGGTGTCTGTGCAGAGGA+GGG 0.617599 1_4:+5598550 Msa0145850:three_prime_UTR
GATTGTAGCTTAATCCAACC+AGG 0.618358 1_4:+5597639 Msa0145850:CDS
AACATCATCCTCATCACCGT+CGG 0.621796 1_4:+5596156 Msa0145850:CDS
ATTCATACCGGAGATACCAC+GGG 0.621948 1_4:-5597103 None:intergenic
TTGTGGTTGCGGAGACAGGT+TGG 0.627147 1_4:+5596807 Msa0145850:CDS
TTATAAAAGTGATCCTGGAA+GGG 0.632786 1_4:+5596443 Msa0145850:CDS
CTTGGATCGGAAGCGAGGGA+GGG 0.633878 1_4:-5596081 None:intergenic
GAGAATGCAAAGGCTTACAA+TGG 0.637829 1_4:+5596869 Msa0145850:CDS
AAAGAGTGGTGTCTGTGCAG+AGG 0.638878 1_4:+5598546 Msa0145850:three_prime_UTR
TGTTGCTGGCGGGATAGTAA+GGG 0.641175 1_4:-5596137 None:intergenic
TGAAAACTTCCAGCAGAAGG+TGG 0.643067 1_4:-5596330 None:intergenic
GATTCATGGCGTATGCAGCA+TGG 0.644106 1_4:-5597695 None:intergenic
GAGACAGGTTGGCCTTACAA+AGG 0.646337 1_4:+5596818 Msa0145850:CDS
ACCGAGTATTGAGAATGCAA+AGG 0.650369 1_4:+5596859 Msa0145850:CDS
TGCTGGCGGGATAGTAAGGG+AGG 0.653268 1_4:-5596134 None:intergenic
AACGTTAACAGAAATAGAGG+AGG 0.656829 1_4:-5598577 None:intergenic
AGTGATGACTTCGTTGCCGA+CGG 0.661992 1_4:-5596172 None:intergenic
GATGAGGATGATGTTGCTGG+CGG 0.665630 1_4:-5596148 None:intergenic
ACGGGGCTACTAGTAGGTGT+AGG 0.667625 1_4:-5597085 None:intergenic
GGGATAGTAAGGGAGGACGT+TGG 0.674640 1_4:-5596127 None:intergenic
AGTGCTCAGAAATAAAAGAG+TGG 0.677774 1_4:+5598532 Msa0145850:three_prime_UTR
ACTGATGCCAGGGAAATCAG+TGG 0.687146 1_4:+5596931 Msa0145850:CDS
CTTGGCCATAGTTTACTCCG+AGG 0.717839 1_4:-5595903 None:intergenic
TACACCTACTAGTAGCCCCG+TGG 0.742913 1_4:+5597087 Msa0145850:CDS
TGTAGCTTAATCCAACCAGG+AGG 0.770988 1_4:+5597642 Msa0145850:CDS
TTCATACCGGAGATACCACG+GGG 0.792540 1_4:-5597102 None:intergenic
TTACAAAGGAGATAACGACG+AGG 0.827370 1_4:+5596832 Msa0145850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTATATATATTATCAAAT+AGG - chr1_4:5595181-5595200 None:intergenic 10.0%
!!! CTATTTGATAATATATATAA+TGG + chr1_4:5595179-5595198 Msa0145850:intron 10.0%
!! TTAAAACATCATCAAAAATT+AGG - chr1_4:5594554-5594573 None:intergenic 15.0%
!!! TAATTTTGTGAATTAAAACT+GGG + chr1_4:5594680-5594699 Msa0145850:intron 15.0%
!! AGAGAATTAAAAAAAAAAAC+TGG + chr1_4:5595533-5595552 Msa0145850:intron 15.0%
!! AATGATACAAATCTTATTAA+CGG + chr1_4:5596198-5596217 Msa0145850:CDS 15.0%
!! TGTTTAAACAATACTATATT+AGG + chr1_4:5598001-5598020 Msa0145850:intron 15.0%
!! GTTTAAACAATACTATATTA+GGG + chr1_4:5598002-5598021 Msa0145850:intron 15.0%
!!! ATATACTTTGTTTATTTTGT+AGG + chr1_4:5598364-5598383 Msa0145850:intron 15.0%
!! TATAATAGTTGTATTTATAC+TGG + chr1_4:5598388-5598407 Msa0145850:CDS 15.0%
!!! TTATCGTTAAAAAAATGTTT+TGG + chr1_4:5598501-5598520 Msa0145850:three_prime_UTR 15.0%
!! ATTATTTGAATAACATAACA+TGG - chr1_4:5598681-5598700 None:intergenic 15.0%
!! TCTATTTAATCTGTTCTTAA+CGG + chr1_4:5594608-5594627 Msa0145850:intron 20.0%
!! ATTCACAAAATTAGAGATTA+TGG - chr1_4:5594673-5594692 None:intergenic 20.0%
!!! CTAATTTTGTGAATTAAAAC+TGG + chr1_4:5594679-5594698 Msa0145850:intron 20.0%
!! AACATTTCTTATTCTAACTA+TGG + chr1_4:5595047-5595066 Msa0145850:intron 20.0%
!!! TAATTATAAGCTCAGTTTTA+AGG - chr1_4:5595326-5595345 None:intergenic 20.0%
!! TTCAATCATCATTCAAAATT+GGG - chr1_4:5595416-5595435 None:intergenic 20.0%
!! ATTCAATCATCATTCAAAAT+TGG - chr1_4:5595417-5595436 None:intergenic 20.0%
!!! GTCAATTTCTAAAATTTCTT+AGG - chr1_4:5595717-5595736 None:intergenic 20.0%
!!! ATAGAAGAATTTTTAAGTAG+AGG + chr1_4:5595742-5595761 Msa0145850:intron 20.0%
!! TTATAAGCAAAATAAGGATA+AGG - chr1_4:5596429-5596448 None:intergenic 20.0%
!!! TCACTTTTATAAGCAAAATA+AGG - chr1_4:5596435-5596454 None:intergenic 20.0%
!! ATGTAATCAGAATTGATATT+TGG - chr1_4:5596567-5596586 None:intergenic 20.0%
!! AGTTAATAACTGATTATTAG+TGG + chr1_4:5598048-5598067 Msa0145850:intron 20.0%
!! GTTAATAACTGATTATTAGT+GGG + chr1_4:5598049-5598068 Msa0145850:intron 20.0%
!! AGACAAAAGTTATTAGAAAA+TGG - chr1_4:5598164-5598183 None:intergenic 20.0%
!!! TTGTTTATCACTTTAGATTT+TGG + chr1_4:5598253-5598272 Msa0145850:intron 20.0%
!!! TATCTACTTTCTTGTTTTTT+AGG - chr1_4:5598427-5598446 None:intergenic 20.0%
!! AAAAACAAGAAAGTAGATAA+AGG + chr1_4:5598428-5598447 Msa0145850:three_prime_UTR 20.0%
!! TTCTTTGTTTCATTAAGTTG+AGG + chr1_4:5594468-5594487 Msa0145850:intron 25.0%
! AAACAAATGAAAAATGCTAG+CGG - chr1_4:5594577-5594596 None:intergenic 25.0%
!!! TAAATATTTTTACTCTCCCA+CGG - chr1_4:5594742-5594761 None:intergenic 25.0%
!!! AAATATTTATTTTCAGCCGT+TGG + chr1_4:5594753-5594772 Msa0145850:intron 25.0%
!!! GAAGATGATTATTTCTACAA+GGG - chr1_4:5594887-5594906 None:intergenic 25.0%
! GAAATAATCATCTTCCATAA+AGG + chr1_4:5594892-5594911 Msa0145850:intron 25.0%
! TTTAGATAACCTAGTTAGAT+TGG - chr1_4:5595630-5595649 None:intergenic 25.0%
! TGATGTTGTGATATATGTTT+CGG - chr1_4:5595686-5595705 None:intergenic 25.0%
! ATAAGGATTAATAGCAAAAG+GGG - chr1_4:5596412-5596431 None:intergenic 25.0%
! GATAAGGATTAATAGCAAAA+GGG - chr1_4:5596413-5596432 None:intergenic 25.0%
! TAAAGTGATAGAATTCATAC+CGG - chr1_4:5597118-5597137 None:intergenic 25.0%
! CATGCTATGTTACTATTATA+CGG - chr1_4:5597546-5597565 None:intergenic 25.0%
! TGTGAAAAATCACAAGTTAA+TGG - chr1_4:5597747-5597766 None:intergenic 25.0%
! TATGCAATGTATGTAGTATT+TGG - chr1_4:5598086-5598105 None:intergenic 25.0%
!! GTATTAAGTTGTGCATTATT+CGG + chr1_4:5598109-5598128 Msa0145850:intron 25.0%
!! TTGTTTATCCCTTTAGATTT+TGG + chr1_4:5598183-5598202 Msa0145850:intron 25.0%
! CTCAATTACCAAAATCTAAA+GGG - chr1_4:5598194-5598213 None:intergenic 25.0%
! TCTCAATTACCAAAATCTAA+AGG - chr1_4:5598195-5598214 None:intergenic 25.0%
! AATAGTTGTATTTATACTGG+AGG + chr1_4:5598391-5598410 Msa0145850:CDS 25.0%
! ATAGTTGTATTTATACTGGA+GGG + chr1_4:5598392-5598411 Msa0145850:CDS 25.0%
! AAAAACGTTAACAGAAATAG+AGG - chr1_4:5598583-5598602 None:intergenic 25.0%
ATTCTTGTCATGTTTACCTT+GGG - chr1_4:5594319-5594338 None:intergenic 30.0%
TGTAACTGAGATTGTAAGAA+GGG - chr1_4:5594402-5594421 None:intergenic 30.0%
!!! GAAACAAGTGATTTTGACTT+TGG - chr1_4:5594451-5594470 None:intergenic 30.0%
!! TATATCCTTTAATTTTGCCC+AGG + chr1_4:5594518-5594537 Msa0145850:intron 30.0%
!! GGAAGATGATTATTTCTACA+AGG - chr1_4:5594888-5594907 None:intergenic 30.0%
TTCTTTCCAGAAATCTTCAA+CGG - chr1_4:5594920-5594939 None:intergenic 30.0%
! GTTGATGAATGAGCAATAAA+GGG - chr1_4:5595004-5595023 None:intergenic 30.0%
!! AGTTGATGAATGAGCAATAA+AGG - chr1_4:5595005-5595024 None:intergenic 30.0%
TTATTGTCAAATTACCCTAC+TGG + chr1_4:5595104-5595123 Msa0145850:intron 30.0%
TATTGTCAAATTACCCTACT+GGG + chr1_4:5595105-5595124 Msa0145850:intron 30.0%
AGTATGAATCTGAACTTTAC+TGG - chr1_4:5595137-5595156 None:intergenic 30.0%
! TTAGATCCATGTTTCTGATA+AGG + chr1_4:5595217-5595236 Msa0145850:intron 30.0%
TGCATAGTGTTTATAGTCTT+CGG + chr1_4:5595482-5595501 Msa0145850:intron 30.0%
!! CTAGTTTTTGATATTGAGAG+AGG - chr1_4:5595515-5595534 None:intergenic 30.0%
!! CATCCTAGTTTTCAATGAAT+TGG - chr1_4:5595769-5595788 None:intergenic 30.0%
! TTCTCTTGGTGGTAAAATTA+GGG + chr1_4:5596266-5596285 Msa0145850:CDS 30.0%
TGGTAAAATTAGGGTTTCTA+CGG + chr1_4:5596275-5596294 Msa0145850:CDS 30.0%
! TTGTCGTTTAATAAGGATAC+TGG + chr1_4:5596384-5596403 Msa0145850:CDS 30.0%
GGATAAGGATTAATAGCAAA+AGG - chr1_4:5596414-5596433 None:intergenic 30.0%
TTTGCTTATAAAAGTGATCC+TGG + chr1_4:5596438-5596457 Msa0145850:CDS 30.0%
TTATAAAAGTGATCCTGGAA+GGG + chr1_4:5596443-5596462 Msa0145850:CDS 30.0%
AAGTTATGTGTTAGCTATGA+TGG + chr1_4:5596685-5596704 Msa0145850:intron 30.0%
! ACTAGATTCTATGGGTTTTA+AGG + chr1_4:5596775-5596794 Msa0145850:CDS 30.0%
!! TTTTAAGGATGTTGAGATTG+TGG + chr1_4:5596790-5596809 Msa0145850:CDS 30.0%
ATGAAAATGATGATACTTGG+TGG - chr1_4:5597209-5597228 None:intergenic 30.0%
GGTATGAAAATGATGATACT+TGG - chr1_4:5597212-5597231 None:intergenic 30.0%
TTGAATTTGATTGAAGACTC+CGG + chr1_4:5597279-5597298 Msa0145850:intron 30.0%
! TTTAAGAATTCCGCTTTGTT+TGG - chr1_4:5597355-5597374 None:intergenic 30.0%
AACAAAGCGGAATTCTTAAA+CGG + chr1_4:5597355-5597374 Msa0145850:intron 30.0%
GATTAATGATTGCAAAATGC+TGG - chr1_4:5597389-5597408 None:intergenic 30.0%
CGTATAATAGTAACATAGCA+TGG + chr1_4:5597544-5597563 Msa0145850:CDS 30.0%
CAAATTTGGATTATGCTTGT+GGG + chr1_4:5597607-5597626 Msa0145850:CDS 30.0%
TTTCTCAGATATCGTAAGAT+AGG - chr1_4:5597839-5597858 None:intergenic 30.0%
! TACTATGCACAGTTGATTTA+TGG - chr1_4:5597907-5597926 None:intergenic 30.0%
! ATTATTCGGCAAAAGTTGAT+TGG + chr1_4:5598123-5598142 Msa0145850:intron 30.0%
!! GATTTTGGTAATTGAGAATG+TGG + chr1_4:5598198-5598217 Msa0145850:intron 30.0%
CATTCTTGTCATGTTTACCT+TGG - chr1_4:5594320-5594339 None:intergenic 35.0%
CAAGGTAAACATGACAAGAA+TGG + chr1_4:5594318-5594337 Msa0145850:exon 35.0%
AACATGACAAGAATGGTTTC+TGG + chr1_4:5594325-5594344 Msa0145850:exon 35.0%
GTGTAACTGAGATTGTAAGA+AGG - chr1_4:5594403-5594422 None:intergenic 35.0%
TAAGACCTGGGCAAAATTAA+AGG - chr1_4:5594526-5594545 None:intergenic 35.0%
AATTAGGCAAAGTAAGACCT+GGG - chr1_4:5594538-5594557 None:intergenic 35.0%
AAATTAGGCAAAGTAAGACC+TGG - chr1_4:5594539-5594558 None:intergenic 35.0%
! TATTTCTACAAGGGTGGATT+TGG - chr1_4:5594878-5594897 None:intergenic 35.0%
!! GATGATTATTTCTACAAGGG+TGG - chr1_4:5594884-5594903 None:intergenic 35.0%
! AATGGCGACAAAGATGTTTT+TGG - chr1_4:5594971-5594990 None:intergenic 35.0%
ATAAAGGGCTACGATGATAA+TGG - chr1_4:5594989-5595008 None:intergenic 35.0%
ACATGGATCTAAACTTCAGA+TGG - chr1_4:5595209-5595228 None:intergenic 35.0%
GCATAGTGTTTATAGTCTTC+GGG + chr1_4:5595483-5595502 Msa0145850:intron 35.0%
TGGCACGAGCAAATAAATTT+AGG - chr1_4:5595583-5595602 None:intergenic 35.0%
! ATAACCTAGTTAGATTGGCT+CGG - chr1_4:5595625-5595644 None:intergenic 35.0%
GGACCAATTCATTGAAAACT+AGG + chr1_4:5595763-5595782 Msa0145850:intron 35.0%
TTCGAAAAAGTCCGACTATA+CGG + chr1_4:5595982-5596001 Msa0145850:CDS 35.0%
! TTTTGCATGTTCTGTATAGC+TGG - chr1_4:5596231-5596250 None:intergenic 35.0%
! CTTCTCTTGGTGGTAAAATT+AGG + chr1_4:5596265-5596284 Msa0145850:CDS 35.0%
!!! GATGTCGGTTTTGAAAAACT+CGG + chr1_4:5596305-5596324 Msa0145850:CDS 35.0%
! TGAATATAGTACCGTTTTGC+AGG + chr1_4:5596356-5596375 Msa0145850:CDS 35.0%
! GAATATAGTACCGTTTTGCA+GGG + chr1_4:5596357-5596376 Msa0145850:CDS 35.0%
!! GGGTTTGTTGTCGTTTAATA+AGG + chr1_4:5596377-5596396 Msa0145850:CDS 35.0%
CTTATAAAAGTGATCCTGGA+AGG + chr1_4:5596442-5596461 Msa0145850:CDS 35.0%
CATGAATATGTTTGATGCTC+AGG + chr1_4:5596536-5596555 Msa0145850:intron 35.0%
!! TCAAGATTTTATGAGTGTCG+AGG + chr1_4:5596604-5596623 Msa0145850:intron 35.0%
! TTTTATCGTGTGAATTGTGC+AGG + chr1_4:5596733-5596752 Msa0145850:intron 35.0%
TAGATCTGCACTAGATTCTA+TGG + chr1_4:5596766-5596785 Msa0145850:CDS 35.0%
AGATCTGCACTAGATTCTAT+GGG + chr1_4:5596767-5596786 Msa0145850:CDS 35.0%
TAGAACAGTTTCAAGATGAG+AGG - chr1_4:5597233-5597252 None:intergenic 35.0%
!! CTTTGTTTGGTGTAGAACTT+GGG - chr1_4:5597342-5597361 None:intergenic 35.0%
AAGTTCTACACCAAACAAAG+CGG + chr1_4:5597342-5597361 Msa0145850:intron 35.0%
!! ACTTTTGGCGTTGAATTCAT+AGG - chr1_4:5597507-5597526 None:intergenic 35.0%
TTACTATTATACGGCGTTGT+TGG - chr1_4:5597537-5597556 None:intergenic 35.0%
! ACATCAGTTAATCCTGCTTT+TGG - chr1_4:5597576-5597595 None:intergenic 35.0%
TGTGCAACTACAAGCAAATT+TGG + chr1_4:5597593-5597612 Msa0145850:CDS 35.0%
GCAAATTTGGATTATGCTTG+TGG + chr1_4:5597606-5597625 Msa0145850:CDS 35.0%
AGTGTGATAGAAGAGATTCA+TGG - chr1_4:5597712-5597731 None:intergenic 35.0%
AATCTCTTCTATCACACTGT+TGG + chr1_4:5597714-5597733 Msa0145850:CDS 35.0%
ATCTCTTCTATCACACTGTT+GGG + chr1_4:5597715-5597734 Msa0145850:CDS 35.0%
!! AAAGTTGATTGGTTCTGACT+TGG + chr1_4:5598134-5598153 Msa0145850:intron 35.0%
AGTGCTCAGAAATAAAAGAG+TGG + chr1_4:5598532-5598551 Msa0145850:three_prime_UTR 35.0%
AACGTTAACAGAAATAGAGG+AGG - chr1_4:5598580-5598599 None:intergenic 35.0%
TGTGAGGAAACTTACTTGCA+AGG - chr1_4:5594378-5594397 None:intergenic 40.0%
AGATTGTAAGAAGGGTTGTG+AGG - chr1_4:5594394-5594413 None:intergenic 40.0%
TGTGAATTAAAACTGGGCCA+AGG + chr1_4:5594686-5594705 Msa0145850:intron 40.0%
CATGAGCTTTCACTATCCAA+CGG - chr1_4:5594772-5594791 None:intergenic 40.0%
TTCTCTATTCTCTCTCCTCT+TGG + chr1_4:5594841-5594860 Msa0145850:intron 40.0%
TTGGACAAGAAAGAACCAAG+AGG - chr1_4:5594859-5594878 None:intergenic 40.0%
AATCTTCAACGGTGCCTTTA+TGG - chr1_4:5594909-5594928 None:intergenic 40.0%
!! TTACTGGAAAGTACCCAGTA+GGG - chr1_4:5595121-5595140 None:intergenic 40.0%
!! TTTACTGGAAAGTACCCAGT+AGG - chr1_4:5595122-5595141 None:intergenic 40.0%
! TCCATGTTTCTGATAAGGTG+TGG + chr1_4:5595222-5595241 Msa0145850:intron 40.0%
! CCATGTTTCTGATAAGGTGT+GGG + chr1_4:5595223-5595242 Msa0145850:intron 40.0%
TGTTTATAGTCTTCGGGTCA+AGG + chr1_4:5595489-5595508 Msa0145850:intron 40.0%
CATAGTTTACTCCGAGGAAT+GGG - chr1_4:5595900-5595919 None:intergenic 40.0%
!!! GTATAGTCGGACTTTTTCGA+AGG - chr1_4:5595983-5596002 None:intergenic 40.0%
TTCTACGGTTCATACGATGT+CGG + chr1_4:5596290-5596309 Msa0145850:CDS 40.0%
TCATGAAAACTTCCAGCAGA+AGG - chr1_4:5596336-5596355 None:intergenic 40.0%
!!! TGCCTTTTTCAACCTAATGC+CGG + chr1_4:5596483-5596502 Msa0145850:CDS 40.0%
AGTATTTGCATCAACTCGAC+CGG - chr1_4:5596505-5596524 None:intergenic 40.0%
TACTTTATCCTTCGTGTGCA+TGG + chr1_4:5596628-5596647 Msa0145850:intron 40.0%
TCGTCGTTATCTCCTTTGTA+AGG - chr1_4:5596833-5596852 None:intergenic 40.0%
TTACAAAGGAGATAACGACG+AGG + chr1_4:5596832-5596851 Msa0145850:CDS 40.0%
!! ACCGAGTATTGAGAATGCAA+AGG + chr1_4:5596859-5596878 Msa0145850:CDS 40.0%
GCCTTTGCATTCTCAATACT+CGG - chr1_4:5596863-5596882 None:intergenic 40.0%
GAGAATGCAAAGGCTTACAA+TGG + chr1_4:5596869-5596888 Msa0145850:CDS 40.0%
CATCTTTGCCTTGTATGATG+AGG + chr1_4:5596961-5596980 Msa0145850:CDS 40.0%
CTTCAAGTCCTCATCATACA+AGG - chr1_4:5596972-5596991 None:intergenic 40.0%
! TAGTGCTTTGTTGCTTAGAG+AGG - chr1_4:5597063-5597082 None:intergenic 40.0%
AATTCATACCGGAGATACCA+CGG - chr1_4:5597107-5597126 None:intergenic 40.0%
! TGATGATACTTGGTGGTTGA+AGG - chr1_4:5597202-5597221 None:intergenic 40.0%
! ACTGGAGTTTTCGATACTTC+CGG - chr1_4:5597301-5597320 None:intergenic 40.0%
!! GCTTTGTTTGGTGTAGAACT+TGG - chr1_4:5597343-5597362 None:intergenic 40.0%
! GTTGTTGGACTTGGAACTTT+TGG - chr1_4:5597522-5597541 None:intergenic 40.0%
GATTGTAGCTTAATCCAACC+AGG + chr1_4:5597639-5597658 Msa0145850:CDS 40.0%
! GCATGGTTAGCTAATGTGTT+AGG - chr1_4:5597681-5597700 None:intergenic 40.0%
AACCCAAGTAAGTTCTCATG+CGG + chr1_4:5597789-5597808 Msa0145850:intron 40.0%
AACCGCATGAGAACTTACTT+GGG - chr1_4:5597794-5597813 None:intergenic 40.0%
AAACCGCATGAGAACTTACT+TGG - chr1_4:5597795-5597814 None:intergenic 40.0%
!! GATTTTGGCAATTGAGAGTG+TGG + chr1_4:5598268-5598287 Msa0145850:intron 40.0%
GCAGTTTCAAAGTCTTCCCA+AGG + chr1_4:5594300-5594319 Msa0145850:five_prime_UTR 45.0%
ATTAAAACTGGGCCAAGGCT+AGG + chr1_4:5594691-5594710 Msa0145850:intron 45.0%
TTAAAACTGGGCCAAGGCTA+GGG + chr1_4:5594692-5594711 Msa0145850:intron 45.0%
CTTGATAAGTCTCTCACCGT+GGG + chr1_4:5594723-5594742 Msa0145850:intron 45.0%
!! AAGGCACCGTTGAAGATTTC+TGG + chr1_4:5594911-5594930 Msa0145850:intron 45.0%
CCCACACCTTATCAGAAACA+TGG - chr1_4:5595226-5595245 None:intergenic 45.0%
! TGTTTCTGATAAGGTGTGGG+AGG + chr1_4:5595226-5595245 Msa0145850:intron 45.0%
GTTTCTGATAAGGTGTGGGA+GGG + chr1_4:5595227-5595246 Msa0145850:intron 45.0%
!!! CAGTTTTAAGGCGCCTTCTA+GGG - chr1_4:5595314-5595333 None:intergenic 45.0%
!!! TCAGTTTTAAGGCGCCTTCT+AGG - chr1_4:5595315-5595334 None:intergenic 45.0%
CCATAGTTTACTCCGAGGAA+TGG - chr1_4:5595901-5595920 None:intergenic 45.0%
CCATTCCTCGGAGTAAACTA+TGG + chr1_4:5595898-5595917 Msa0145850:CDS 45.0%
!!! TAGTCGGACTTTTTCGAAGG+CGG - chr1_4:5595980-5595999 None:intergenic 45.0%
! GGATTTGATTATGGCGGGAT+CGG - chr1_4:5596010-5596029 None:intergenic 45.0%
GTTGGCGAGGGATTTGATTA+TGG - chr1_4:5596019-5596038 None:intergenic 45.0%
ACCGGAATCGGAATCGTAAT+CGG + chr1_4:5596039-5596058 Msa0145850:CDS 45.0%
TCCGATTACGATTCCGATTC+CGG - chr1_4:5596043-5596062 None:intergenic 45.0%
!! GGTTTTGGCGAAACTTGGAT+CGG - chr1_4:5596097-5596116 None:intergenic 45.0%
ATCCAAGTTTCGCCAAAACC+TGG + chr1_4:5596097-5596116 Msa0145850:CDS 45.0%
!! ATCCAGGTTTTGGCGAAACT+TGG - chr1_4:5596102-5596121 None:intergenic 45.0%
!! GTTGGTGGAAATCCAGGTTT+TGG - chr1_4:5596112-5596131 None:intergenic 45.0%
AACATCATCCTCATCACCGT+CGG + chr1_4:5596156-5596175 Msa0145850:CDS 45.0%
CTTGATGAAGCTTCTCTTGG+TGG + chr1_4:5596255-5596274 Msa0145850:CDS 45.0%
TGAAAACTTCCAGCAGAAGG+TGG - chr1_4:5596333-5596352 None:intergenic 45.0%
CGACAACAAACCCTGCAAAA+CGG - chr1_4:5596370-5596389 None:intergenic 45.0%
TCCTGGAAGGGCTGATAATT+TGG + chr1_4:5596455-5596474 Msa0145850:CDS 45.0%
!! GACCGGCATTAGGTTGAAAA+AGG - chr1_4:5596488-5596507 None:intergenic 45.0%
TATCGTGTGAATTGTGCAGG+TGG + chr1_4:5596736-5596755 Msa0145850:intron 45.0%
GGATGTTGAGATTGTGGTTG+CGG + chr1_4:5596796-5596815 Msa0145850:CDS 45.0%
GATTAAGCACCTGCGATCTA+AGG + chr1_4:5596898-5596917 Msa0145850:CDS 45.0%
!! TATGTGTCCACTGATTTCCC+TGG - chr1_4:5596941-5596960 None:intergenic 45.0%
TATGATGAGGACTTGAAGCC+TGG + chr1_4:5596974-5596993 Msa0145850:CDS 45.0%
ATCAGTGTTGTAAAGCCCGA+AGG - chr1_4:5597017-5597036 None:intergenic 45.0%
CAAACGATGATCTATGACGC+TGG + chr1_4:5597037-5597056 Msa0145850:CDS 45.0%
ATTCATACCGGAGATACCAC+GGG - chr1_4:5597106-5597125 None:intergenic 45.0%
! ACTTGGTGGTTGAAGGTTCA+TGG - chr1_4:5597195-5597214 None:intergenic 45.0%
TTATACGGCGTTGTTGGACT+TGG - chr1_4:5597531-5597550 None:intergenic 45.0%
TTTGGATTATGCTTGTGGGC+AGG + chr1_4:5597611-5597630 Msa0145850:CDS 45.0%
TTGGATTATGCTTGTGGGCA+GGG + chr1_4:5597612-5597631 Msa0145850:CDS 45.0%
TGTAGCTTAATCCAACCAGG+AGG + chr1_4:5597642-5597661 Msa0145850:CDS 45.0%
!!! TATTTGATAATATATATAAT+GGG + chr1_4:5595180-5595199 Msa0145850:intron 5.0%
GCTTGATAAGTCTCTCACCG+TGG + chr1_4:5594722-5594741 Msa0145850:intron 50.0%
!!! GCTGCTTTTTCACTCACCCA+CGG + chr1_4:5595264-5595283 Msa0145850:intron 50.0%
!! CTTTTTCACTCACCCACGGT+GGG + chr1_4:5595268-5595287 Msa0145850:intron 50.0%
CTTAATAGGTCTCCCACCGT+GGG - chr1_4:5595283-5595302 None:intergenic 50.0%
CTAGGGTGGGAGAGCTTAAT+AGG - chr1_4:5595297-5595316 None:intergenic 50.0%
TTAAGCTCTCCCACCCTAGA+AGG + chr1_4:5595298-5595317 Msa0145850:intron 50.0%
!! TTTAAGGCGCCTTCTAGGGT+GGG - chr1_4:5595310-5595329 None:intergenic 50.0%
!!! TTTTAAGGCGCCTTCTAGGG+TGG - chr1_4:5595311-5595330 None:intergenic 50.0%
!! GTGGGATTGGTTTGAGAGCT+TGG - chr1_4:5595603-5595622 None:intergenic 50.0%
!! TTAGATTGGCTCGGTGGGAT+TGG - chr1_4:5595616-5595635 None:intergenic 50.0%
!! CCTAGTTAGATTGGCTCGGT+GGG - chr1_4:5595621-5595640 None:intergenic 50.0%
!! ACCTAGTTAGATTGGCTCGG+TGG - chr1_4:5595622-5595641 None:intergenic 50.0%
GCAGAATCTGACCCATTCCT+CGG + chr1_4:5595886-5595905 Msa0145850:intron 50.0%
CTTGGCCATAGTTTACTCCG+AGG - chr1_4:5595906-5595925 None:intergenic 50.0%
!! GGTGGTTTGGAGGAGTTTTG+CGG - chr1_4:5595959-5595978 None:intergenic 50.0%
!!! CTTTTTCGAAGGCGGTGGTT+TGG - chr1_4:5595972-5595991 None:intergenic 50.0%
GCGAGGGATTTGATTATGGC+GGG - chr1_4:5596015-5596034 None:intergenic 50.0%
GGCGAGGGATTTGATTATGG+CGG - chr1_4:5596016-5596035 None:intergenic 50.0%
ATCAAATCCCTCGCCAACAC+CGG + chr1_4:5596021-5596040 Msa0145850:CDS 50.0%
TACGATTCCGATTCCGGTGT+TGG - chr1_4:5596037-5596056 None:intergenic 50.0%
ATCGTAATCGGAGCCGCAAA+CGG + chr1_4:5596051-5596070 Msa0145850:CDS 50.0%
GAAACTTGGATCGGAAGCGA+GGG - chr1_4:5596088-5596107 None:intergenic 50.0%
ATAGTAAGGGAGGACGTTGG+TGG - chr1_4:5596127-5596146 None:intergenic 50.0%
TGTTGCTGGCGGGATAGTAA+GGG - chr1_4:5596140-5596159 None:intergenic 50.0%
ATGTTGCTGGCGGGATAGTA+AGG - chr1_4:5596141-5596160 None:intergenic 50.0%
ATGAGGATGATGTTGCTGGC+GGG - chr1_4:5596150-5596169 None:intergenic 50.0%
GATGAGGATGATGTTGCTGG+CGG - chr1_4:5596151-5596170 None:intergenic 50.0%
GGTGATGAGGATGATGTTGC+TGG - chr1_4:5596154-5596173 None:intergenic 50.0%
AGTGATGACTTCGTTGCCGA+CGG - chr1_4:5596175-5596194 None:intergenic 50.0%
GCGCTTGATGAAGCTTCTCT+TGG + chr1_4:5596252-5596271 Msa0145850:CDS 50.0%
GCCAAATTATCAGCCCTTCC+AGG - chr1_4:5596459-5596478 None:intergenic 50.0%
ACTTGACTCCATGCACACGA+AGG - chr1_4:5596639-5596658 None:intergenic 50.0%
!! GAGACAGGTTGGCCTTACAA+AGG + chr1_4:5596818-5596837 Msa0145850:CDS 50.0%
AAAGGAGATAACGACGAGGC+TGG + chr1_4:5596836-5596855 Msa0145850:CDS 50.0%
! AAGCACCTGCGATCTAAGGT+TGG + chr1_4:5596902-5596921 Msa0145850:CDS 50.0%
! AGCACCTGCGATCTAAGGTT+GGG + chr1_4:5596903-5596922 Msa0145850:CDS 50.0%
! ACTGATTTCCCTGGCATCAG+TGG - chr1_4:5596932-5596951 None:intergenic 50.0%
ACTGATGCCAGGGAAATCAG+TGG + chr1_4:5596931-5596950 Msa0145850:CDS 50.0%
!! GCTGGTTCTGAGAAAGCCTT+CGG + chr1_4:5596998-5597017 Msa0145850:CDS 50.0%
!! CTGGTTCTGAGAAAGCCTTC+GGG + chr1_4:5596999-5597018 Msa0145850:CDS 50.0%
TTCATACCGGAGATACCACG+GGG - chr1_4:5597105-5597124 None:intergenic 50.0%
TGGATTATGCTTGTGGGCAG+GGG + chr1_4:5597613-5597632 Msa0145850:CDS 50.0%
CAAAACAAGCACCTCCTGGT+TGG - chr1_4:5597656-5597675 None:intergenic 50.0%
GGTTCAAAACAAGCACCTCC+TGG - chr1_4:5597660-5597679 None:intergenic 50.0%
GATTCATGGCGTATGCAGCA+TGG - chr1_4:5597698-5597717 None:intergenic 50.0%
AAAGAGTGGTGTCTGTGCAG+AGG + chr1_4:5598546-5598565 Msa0145850:three_prime_UTR 50.0%
!!! GCTTTTTCACTCACCCACGG+TGG + chr1_4:5595267-5595286 Msa0145850:intron 55.0%
GCTTAATAGGTCTCCCACCG+TGG - chr1_4:5595284-5595303 None:intergenic 55.0%
CCCACCGAGCCAATCTAACT+AGG + chr1_4:5595618-5595637 Msa0145850:intron 55.0%
GGATGCTGGTGGAAGGTTGT+CGG - chr1_4:5595932-5595951 None:intergenic 55.0%
! TTGGAGGAGTTTTGCGGTGG+CGG - chr1_4:5595953-5595972 None:intergenic 55.0%
! GGTTTGGAGGAGTTTTGCGG+TGG - chr1_4:5595956-5595975 None:intergenic 55.0%
! TTTCGAAGGCGGTGGTTTGG+AGG - chr1_4:5595969-5595988 None:intergenic 55.0%
!!! TCGGACTTTTTCGAAGGCGG+TGG - chr1_4:5595977-5595996 None:intergenic 55.0%
! CGGGATCGGTTCCGTATAGT+CGG - chr1_4:5595996-5596015 None:intergenic 55.0%
CGAAACTTGGATCGGAAGCG+AGG - chr1_4:5596089-5596108 None:intergenic 55.0%
! GAGGACGTTGGTGGAAATCC+AGG - chr1_4:5596118-5596137 None:intergenic 55.0%
GGGATAGTAAGGGAGGACGT+TGG - chr1_4:5596130-5596149 None:intergenic 55.0%
GCATCAACTCGACCGGCATT+AGG - chr1_4:5596498-5596517 None:intergenic 55.0%
GAGATTGTGGTTGCGGAGAC+AGG + chr1_4:5596803-5596822 Msa0145850:CDS 55.0%
TTGTGGTTGCGGAGACAGGT+TGG + chr1_4:5596807-5596826 Msa0145850:CDS 55.0%
GTGTCCCAACCTTAGATCGC+AGG - chr1_4:5596910-5596929 None:intergenic 55.0%
TTGGGACACCACTGATGCCA+GGG + chr1_4:5596921-5596940 Msa0145850:CDS 55.0%
GCTTTCTCAGAACCAGCTCC+AGG - chr1_4:5596995-5597014 None:intergenic 55.0%
ACGGGGCTACTAGTAGGTGT+AGG - chr1_4:5597088-5597107 None:intergenic 55.0%
TACACCTACTAGTAGCCCCG+TGG + chr1_4:5597087-5597106 Msa0145850:CDS 55.0%
GATACCACGGGGCTACTAGT+AGG - chr1_4:5597094-5597113 None:intergenic 55.0%
TAGTAGCCCCGTGGTATCTC+CGG + chr1_4:5597096-5597115 Msa0145850:CDS 55.0%
!! CCTGTTGGTGCTGGAATCAC+TGG - chr1_4:5597319-5597338 None:intergenic 55.0%
CCAGTGATTCCAGCACCAAC+AGG + chr1_4:5597316-5597335 Msa0145850:intron 55.0%
GGTGTAGAACTTGGGCCTGT+TGG - chr1_4:5597334-5597353 None:intergenic 55.0%
GCATGGTGTGTGCCAAAAGC+AGG + chr1_4:5597561-5597580 Msa0145850:CDS 55.0%
AGTGGTGTCTGTGCAGAGGA+GGG + chr1_4:5598550-5598569 Msa0145850:three_prime_UTR 55.0%
AAACTGGGCCAAGGCTAGGG+TGG + chr1_4:5594695-5594714 Msa0145850:intron 60.0%
AACTGGGCCAAGGCTAGGGT+GGG + chr1_4:5594696-5594715 Msa0145850:intron 60.0%
AAGCTCTCCCACCCTAGCCT+TGG - chr1_4:5594706-5594725 None:intergenic 60.0%
GTGGAAGGTTGTCGGCGACT+TGG - chr1_4:5595924-5595943 None:intergenic 60.0%
!!! AGTTTTGCGGTGGCGGATGC+TGG - chr1_4:5595946-5595965 None:intergenic 60.0%
TCCCTCGCCAACACCGGAAT+CGG + chr1_4:5596027-5596046 Msa0145850:CDS 60.0%
!! TCCGATTCCGGTGTTGGCGA+GGG - chr1_4:5596031-5596050 None:intergenic 60.0%
!! TTCCGATTCCGGTGTTGGCG+AGG - chr1_4:5596032-5596051 None:intergenic 60.0%
! GGAGGGTATGTCGCCGTTTG+CGG - chr1_4:5596067-5596086 None:intergenic 60.0%
CTTGGATCGGAAGCGAGGGA+GGG - chr1_4:5596084-5596103 None:intergenic 60.0%
ACTTGGATCGGAAGCGAGGG+AGG - chr1_4:5596085-5596104 None:intergenic 60.0%
TGCTGGCGGGATAGTAAGGG+AGG - chr1_4:5596137-5596156 None:intergenic 60.0%
CTTCGTTGCCGACGGTGATG+AGG - chr1_4:5596167-5596186 None:intergenic 60.0%
AACTCGGAGCCACCTTCTGC+TGG + chr1_4:5596321-5596340 Msa0145850:CDS 60.0%
GTTGGGACACCACTGATGCC+AGG + chr1_4:5596920-5596939 Msa0145850:CDS 60.0%
GAGGACTTGAAGCCTGGAGC+TGG + chr1_4:5596980-5596999 Msa0145850:CDS 60.0%
GAACTTGGGCCTGTTGGTGC+TGG - chr1_4:5597328-5597347 None:intergenic 60.0%
GAGTGGTGTCTGTGCAGAGG+AGG + chr1_4:5598549-5598568 Msa0145850:three_prime_UTR 60.0%
!! TTTGCGGTGGCGGATGCTGG+TGG - chr1_4:5595943-5595962 None:intergenic 65.0%
!! CGGTGGCGGATGCTGGTGGA+AGG - chr1_4:5595939-5595958 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5594298 5598722 5594298 ID=Msa0145850;Name=Msa0145850
chr1_4 mRNA 5594298 5598722 5594298 ID=Msa0145850-mRNA-1;Parent=Msa0145850;Name=Msa0145850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=30|0.75|0.8|1|1|1|5|299|463
chr1_4 exon 5594298 5594382 5594298 ID=Msa0145850-mRNA-1:exon:2340;Parent=Msa0145850-mRNA-1
chr1_4 exon 5595890 5596509 5595890 ID=Msa0145850-mRNA-1:exon:2341;Parent=Msa0145850-mRNA-1
chr1_4 exon 5596755 5597117 5596755 ID=Msa0145850-mRNA-1:exon:2342;Parent=Msa0145850-mRNA-1
chr1_4 exon 5597480 5597795 5597480 ID=Msa0145850-mRNA-1:exon:2343;Parent=Msa0145850-mRNA-1
chr1_4 exon 5598386 5598722 5598386 ID=Msa0145850-mRNA-1:exon:2344;Parent=Msa0145850-mRNA-1
chr1_4 five_prime_UTR 5594298 5594327 5594298 ID=Msa0145850-mRNA-1:five_prime_utr;Parent=Msa0145850-mRNA-1
chr1_4 CDS 5594328 5594382 5594328 ID=Msa0145850-mRNA-1:cds;Parent=Msa0145850-mRNA-1
chr1_4 CDS 5595890 5596509 5595890 ID=Msa0145850-mRNA-1:cds;Parent=Msa0145850-mRNA-1
chr1_4 CDS 5596755 5597117 5596755 ID=Msa0145850-mRNA-1:cds;Parent=Msa0145850-mRNA-1
chr1_4 CDS 5597480 5597795 5597480 ID=Msa0145850-mRNA-1:cds;Parent=Msa0145850-mRNA-1
chr1_4 CDS 5598386 5598423 5598386 ID=Msa0145850-mRNA-1:cds;Parent=Msa0145850-mRNA-1
chr1_4 three_prime_UTR 5598424 5598722 5598424 ID=Msa0145850-mRNA-1:three_prime_utr;Parent=Msa0145850-mRNA-1
Gene Sequence

>Msa0145850

ATGACAAGAATGGTTTCTGGCTTTCTTCTACTCTTTCTCGCATTCAACCTTGCAAAATCTGACCCATTCCTCGGAGTAAACTATGGCCAAGTCGCCGACAACCTTCCACCAGCATCCGCCACCGCAAAACTCCTCCAAACCACCGCCTTCGAAAAAGTCCGACTATACGGAACCGATCCCGCCATAATCAAATCCCTCGCCAACACCGGAATCGGAATCGTAATCGGAGCCGCAAACGGCGACATACCCTCCCTCGCTTCCGATCCAAGTTTCGCCAAAACCTGGATTTCCACCAACGTCCTCCCTTACTATCCCGCCAGCAACATCATCCTCATCACCGTCGGCAACGAAGTCATCACTTCAAATGATACAAATCTTATTAACGGAATGTTACCAGCTATACAGAACATGCAAAAAGCGCTTGATGAAGCTTCTCTTGGTGGTAAAATTAGGGTTTCTACGGTTCATACGATGTCGGTTTTGAAAAACTCGGAGCCACCTTCTGCTGGAAGTTTTCATGATGAATATAGTACCGTTTTGCAGGGTTTGTTGTCGTTTAATAAGGATACTGGTTCCCCTTTTGCTATTAATCCTTATCCTTATTTTGCTTATAAAAGTGATCCTGGAAGGGCTGATAATTTGGCTTTTTGCCTTTTTCAACCTAATGCCGGTCGAGTGGATGCTGTTAGATCTGCACTAGATTCTATGGGTTTTAAGGATGTTGAGATTGTGGTTGCGGAGACAGGTTGGCCTTACAAAGGAGATAACGACGAGGCTGGACCGAGTATTGAGAATGCAAAGGCTTACAATGGTAATCTGATTAAGCACCTGCGATCTAAGGTTGGGACACCACTGATGCCAGGGAAATCAGTGGACACATACATCTTTGCCTTGTATGATGAGGACTTGAAGCCTGGAGCTGGTTCTGAGAAAGCCTTCGGGCTTTACAACACTGATCAAACGATGATCTATGACGCTGGCCTCTCTAAGCAACAAAGCACTACTCCTACACCTACTAGTAGCCCCGTGGTATCTCCGATTAATCAAGATGTGTCAAAATCTCCTATGAATTCAACGCCAAAAGTTCCAAGTCCAACAACGCCGTATAATAGTAACATAGCATGGTGTGTGCCAAAAGCAGGATTAACTGATGTGCAACTACAAGCAAATTTGGATTATGCTTGTGGGCAGGGGATTGATTGTAGCTTAATCCAACCAGGAGGTGCTTGTTTTGAACCTAACACATTAGCTAACCATGCTGCATACGCCATGAATCTCTTCTATCACACTGTTGGGCAAAATCCATTAACTTGTGATTTTTCACAAACAGCTACACTAACATCAAATAACCCAAGTTATAATAGTTGTATTTATACTGGAGGGAATGCATAA
Protein sequence

>Msa0145850

MTRMVSGFLLLFLAFNLAKSDPFLGVNYGQVADNLPPASATAKLLQTTAFEKVRLYGTDPAIIKSLANTGIGIVIGAANGDIPSLASDPSFAKTWISTNVLPYYPASNIILITVGNEVITSNDTNLINGMLPAIQNMQKALDEASLGGKIRVSTVHTMSVLKNSEPPSAGSFHDEYSTVLQGLLSFNKDTGSPFAINPYPYFAYKSDPGRADNLAFCLFQPNAGRVDAVRSALDSMGFKDVEIVVAETGWPYKGDNDEAGPSIENAKAYNGNLIKHLRSKVGTPLMPGKSVDTYIFALYDEDLKPGAGSEKAFGLYNTDQTMIYDAGLSKQQSTTPTPTSSPVVSPINQDVSKSPMNSTPKVPSPTTPYNSNIAWCVPKAGLTDVQLQANLDYACGQGIDCSLIQPGGACFEPNTLANHAAYAMNLFYHTVGQNPLTCDFSQTATLTSNNPSYNSCIYTGGNA*