Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039640 | sp|Q9LT91|PER66_ARATH | 69.304 | 316 | 90 | 2 | 14 | 322 | 7 | 322 | 7.94e-165 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039640 | Msa0087280 | 0.982938 | 2.127923e-156 | -8.615850e-47 |
| Msa0039640 | Msa0104730 | 0.825316 | 5.009793e-54 | -8.615850e-47 |
| Msa0039640 | Msa0133920 | 0.967782 | 9.387834e-128 | -8.615850e-47 |
| Msa0039640 | Msa0138580 | 0.815080 | 1.110187e-51 | -8.615850e-47 |
| Msa0039640 | Msa0140640 | 0.800046 | 1.731897e-48 | -8.615850e-47 |
| Msa0039640 | Msa0145850 | 0.815647 | 8.305380e-52 | -8.615850e-47 |
| Msa0039640 | Msa0154760 | 0.967937 | 5.705538e-128 | -8.615850e-47 |
| Msa0039640 | Msa0228680 | 0.852223 | 5.315883e-61 | -8.615850e-47 |
| Msa0039640 | Msa0519940 | 0.801524 | 8.646571e-49 | -8.615850e-47 |
| Msa0039640 | Msa0623050 | 0.849553 | 3.002967e-60 | -8.615850e-47 |
| Msa0039640 | Msa0660890 | 0.837056 | 6.507909e-57 | -8.615850e-47 |
| Msa0039640 | Msa0716700 | 0.814345 | 1.615349e-51 | -8.615850e-47 |
| Msa0039640 | Msa0716710 | 0.830467 | 2.889117e-55 | -8.615850e-47 |
| Msa0039640 | Msa0757410 | 0.843636 | 1.240549e-58 | -8.615850e-47 |
| Msa0039640 | Msa0772420 | 0.803746 | 3.009547e-49 | -8.615850e-47 |
| Msa0039640 | Msa0799170 | 0.917731 | 3.711634e-86 | -8.615850e-47 |
| Msa0039640 | Msa0837610 | 0.906365 | 1.604553e-80 | -8.615850e-47 |
| Msa0039640 | Msa1191550 | 0.864359 | 1.287010e-64 | -8.615850e-47 |
| Msa0039640 | Msa1227760 | 0.848373 | 6.389353e-60 | -8.615850e-47 |
| Msa0039640 | Msa1257740 | 0.835326 | 1.790745e-56 | -8.615850e-47 |
| Msa0039640 | Msa1257830 | 0.820080 | 8.285845e-53 | -8.615850e-47 |
| Msa0039640 | Msa1270840 | 0.854863 | 9.272574e-62 | -8.615850e-47 |
| Msa0039640 | Msa1329140 | 0.814201 | 1.737815e-51 | -8.615850e-47 |
| Msa0039640 | Msa1329190 | 0.836744 | 7.821095e-57 | -8.615850e-47 |
| Msa0039640 | Msa1329220 | 0.832257 | 1.048020e-55 | -8.615850e-47 |
| Msa0039640 | Msa1369030 | 0.871081 | 8.967992e-67 | -8.615850e-47 |
| Msa0039640 | Msa1369410 | 0.855261 | 7.105059e-62 | -8.615850e-47 |
| Msa0039640 | Msa1429010 | 0.863286 | 2.774539e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039640 | MtrunA17_Chr1g0204011 | 98.758 | 322 | 4 | 0 | 1 | 322 | 1 | 322 | 0.0 | 660 |
| Msa0039640 | MtrunA17_Chr5g0405991 | 56.051 | 314 | 135 | 2 | 9 | 322 | 6 | 316 | 2.27e-128 | 369 |
| Msa0039640 | MtrunA17_Chr8g0371381 | 56.419 | 296 | 127 | 1 | 27 | 322 | 26 | 319 | 4.47e-125 | 360 |
| Msa0039640 | MtrunA17_Chr1g0157051 | 51.899 | 316 | 149 | 2 | 8 | 321 | 3 | 317 | 1.74e-120 | 349 |
| Msa0039640 | MtrunA17_Chr1g0188431 | 47.651 | 298 | 145 | 3 | 27 | 322 | 39 | 327 | 2.61e-94 | 283 |
| Msa0039640 | MtrunA17_Chr3g0128061 | 48.101 | 316 | 159 | 4 | 12 | 322 | 11 | 326 | 8.53e-94 | 281 |
| Msa0039640 | MtrunA17_Chr6g0477071 | 44.590 | 305 | 158 | 3 | 20 | 322 | 47 | 342 | 9.93e-91 | 274 |
| Msa0039640 | MtrunA17_Chr7g0268501 | 44.904 | 314 | 164 | 6 | 14 | 322 | 11 | 320 | 9.62e-89 | 268 |
| Msa0039640 | MtrunA17_Chr7g0268521 | 44.904 | 314 | 164 | 6 | 14 | 322 | 11 | 320 | 9.62e-89 | 268 |
| Msa0039640 | MtrunA17_Chr4g0024121 | 42.368 | 321 | 180 | 4 | 7 | 322 | 6 | 326 | 2.07e-88 | 268 |
| Msa0039640 | MtrunA17_Chr4g0013721 | 45.695 | 302 | 161 | 3 | 23 | 322 | 96 | 396 | 3.65e-87 | 267 |
| Msa0039640 | MtrunA17_Chr5g0402571 | 41.956 | 317 | 178 | 4 | 10 | 322 | 12 | 326 | 3.40e-86 | 262 |
| Msa0039640 | MtrunA17_Chr4g0013821 | 44.554 | 303 | 165 | 3 | 22 | 322 | 23 | 324 | 7.56e-86 | 261 |
| Msa0039640 | MtrunA17_Chr2g0322861 | 43.125 | 320 | 175 | 6 | 8 | 322 | 69 | 386 | 5.96e-85 | 261 |
| Msa0039640 | MtrunA17_Chr1g0197411 | 42.547 | 322 | 176 | 6 | 10 | 322 | 9 | 330 | 1.65e-84 | 258 |
| Msa0039640 | MtrunA17_Chr3g0106921 | 39.752 | 322 | 180 | 5 | 8 | 322 | 6 | 320 | 7.93e-83 | 253 |
| Msa0039640 | MtrunA17_Chr5g0402581 | 40.694 | 317 | 182 | 4 | 10 | 322 | 12 | 326 | 7.94e-83 | 253 |
| Msa0039640 | MtrunA17_Chr1g0194151 | 44.411 | 331 | 174 | 8 | 1 | 322 | 4 | 333 | 2.17e-82 | 252 |
| Msa0039640 | MtrunA17_Chr5g0401431 | 42.727 | 330 | 174 | 9 | 5 | 321 | 1 | 328 | 2.29e-82 | 252 |
| Msa0039640 | MtrunA17_Chr5g0432331 | 44.828 | 319 | 159 | 10 | 13 | 322 | 42 | 352 | 3.82e-82 | 253 |
| Msa0039640 | MtrunA17_Chr3g0129051 | 41.033 | 329 | 180 | 6 | 1 | 322 | 1 | 322 | 1.15e-81 | 250 |
| Msa0039640 | MtrunA17_Chr8g0364291 | 40.952 | 315 | 180 | 4 | 14 | 322 | 10 | 324 | 1.85e-81 | 250 |
| Msa0039640 | MtrunA17_Chr5g0432351 | 44.828 | 319 | 159 | 10 | 13 | 322 | 11 | 321 | 2.23e-81 | 249 |
| Msa0039640 | MtrunA17_Chr4g0070951 | 41.433 | 321 | 174 | 7 | 12 | 322 | 13 | 329 | 2.40e-81 | 249 |
| Msa0039640 | MtrunA17_Chr2g0292271 | 42.138 | 318 | 176 | 5 | 12 | 322 | 14 | 330 | 4.32e-81 | 250 |
| Msa0039640 | MtrunA17_Chr4g0068621 | 44.850 | 301 | 159 | 6 | 27 | 322 | 38 | 336 | 5.17e-81 | 249 |
| Msa0039640 | MtrunA17_Chr1g0175561 | 39.812 | 319 | 181 | 7 | 14 | 322 | 9 | 326 | 6.67e-81 | 248 |
| Msa0039640 | MtrunA17_Chr5g0404721 | 42.715 | 302 | 166 | 5 | 27 | 322 | 30 | 330 | 2.57e-80 | 247 |
| Msa0039640 | MtrunA17_Chr2g0279041 | 41.509 | 318 | 176 | 4 | 12 | 322 | 11 | 325 | 2.60e-80 | 247 |
| Msa0039640 | MtrunA17_Chr2g0291751 | 41.640 | 317 | 179 | 4 | 12 | 322 | 14 | 330 | 5.02e-80 | 247 |
| Msa0039640 | MtrunA17_Chr5g0432341 | 44.201 | 319 | 161 | 10 | 13 | 322 | 11 | 321 | 7.62e-80 | 246 |
| Msa0039640 | MtrunA17_Chr2g0292211 | 42.587 | 317 | 176 | 4 | 12 | 322 | 25 | 341 | 9.19e-80 | 247 |
| Msa0039640 | MtrunA17_Chr2g0299691 | 43.506 | 308 | 159 | 8 | 26 | 322 | 55 | 358 | 1.43e-79 | 246 |
| Msa0039640 | MtrunA17_Chr6g0451571 | 43.750 | 320 | 168 | 7 | 13 | 322 | 17 | 334 | 1.44e-79 | 245 |
| Msa0039640 | MtrunA17_Chr8g0372601 | 43.234 | 303 | 163 | 7 | 27 | 322 | 30 | 330 | 1.65e-79 | 245 |
| Msa0039640 | MtrunA17_Chr3g0114451 | 42.105 | 304 | 165 | 4 | 23 | 322 | 22 | 318 | 7.17e-79 | 243 |
| Msa0039640 | MtrunA17_Chr7g0225221 | 42.006 | 319 | 173 | 7 | 10 | 322 | 8 | 320 | 1.81e-78 | 242 |
| Msa0039640 | MtrunA17_Chr1g0194271 | 43.195 | 338 | 175 | 7 | 1 | 322 | 4 | 340 | 1.84e-78 | 243 |
| Msa0039640 | MtrunA17_Chr2g0320071 | 39.752 | 322 | 179 | 5 | 9 | 322 | 3 | 317 | 3.93e-78 | 241 |
| Msa0039640 | MtrunA17_Chr4g0013181 | 43.478 | 299 | 156 | 6 | 30 | 322 | 62 | 353 | 4.30e-78 | 242 |
| Msa0039640 | MtrunA17_Chr2g0292091 | 40.461 | 304 | 175 | 4 | 25 | 322 | 22 | 325 | 9.60e-78 | 241 |
| Msa0039640 | MtrunA17_Chr2g0320091 | 40.557 | 323 | 176 | 6 | 9 | 322 | 3 | 318 | 3.32e-77 | 239 |
| Msa0039640 | MtrunA17_Chr4g0013171 | 42.904 | 303 | 158 | 8 | 27 | 322 | 27 | 321 | 3.71e-77 | 239 |
| Msa0039640 | MtrunA17_Chr1g0164891 | 45.183 | 301 | 155 | 8 | 31 | 322 | 93 | 392 | 4.01e-77 | 241 |
| Msa0039640 | MtrunA17_Chr7g0258811 | 40.379 | 317 | 180 | 6 | 14 | 322 | 56 | 371 | 4.79e-77 | 240 |
| Msa0039640 | MtrunA17_Chr2g0292241 | 42.157 | 306 | 171 | 4 | 23 | 322 | 25 | 330 | 1.16e-76 | 238 |
| Msa0039640 | MtrunA17_Chr2g0292251 | 42.020 | 307 | 170 | 5 | 23 | 322 | 24 | 329 | 1.74e-76 | 238 |
| Msa0039640 | MtrunA17_Chr6g0460711 | 39.490 | 314 | 182 | 5 | 12 | 322 | 6 | 314 | 2.04e-76 | 237 |
| Msa0039640 | MtrunA17_Chr1g0155611 | 44.371 | 302 | 162 | 5 | 27 | 322 | 46 | 347 | 2.31e-76 | 238 |
| Msa0039640 | MtrunA17_Chr5g0432441 | 39.450 | 327 | 181 | 7 | 5 | 322 | 8 | 326 | 4.38e-76 | 236 |
| Msa0039640 | MtrunA17_Chr7g0254201 | 41.694 | 307 | 164 | 6 | 22 | 322 | 15 | 312 | 5.16e-76 | 235 |
| Msa0039640 | MtrunA17_Chr3g0129041 | 42.121 | 330 | 175 | 7 | 1 | 322 | 1 | 322 | 7.19e-76 | 235 |
| Msa0039640 | MtrunA17_Chr3g0106901 | 40.184 | 326 | 184 | 4 | 1 | 322 | 5 | 323 | 7.49e-76 | 235 |
| Msa0039640 | MtrunA17_Chr2g0320101 | 39.441 | 322 | 180 | 5 | 9 | 322 | 3 | 317 | 8.93e-76 | 235 |
| Msa0039640 | MtrunA17_Chr5g0400331 | 43.082 | 318 | 164 | 9 | 19 | 322 | 17 | 331 | 9.82e-76 | 235 |
| Msa0039640 | MtrunA17_Chr2g0292111 | 39.432 | 317 | 186 | 4 | 12 | 322 | 14 | 330 | 1.05e-75 | 236 |
| Msa0039640 | MtrunA17_Chr1g0213061 | 42.188 | 320 | 170 | 7 | 10 | 322 | 10 | 321 | 1.10e-75 | 235 |
| Msa0039640 | MtrunA17_Chr1g0148021 | 41.640 | 317 | 177 | 5 | 13 | 322 | 13 | 328 | 1.17e-75 | 235 |
| Msa0039640 | MtrunA17_Chr2g0292181 | 42.157 | 306 | 171 | 4 | 23 | 322 | 34 | 339 | 1.28e-75 | 236 |
| Msa0039640 | MtrunA17_Chr7g0244461 | 40.248 | 323 | 177 | 6 | 5 | 322 | 1 | 312 | 1.93e-75 | 234 |
| Msa0039640 | MtrunA17_Chr5g0438021 | 40.683 | 322 | 171 | 7 | 13 | 322 | 12 | 325 | 2.30e-75 | 234 |
| Msa0039640 | MtrunA17_Chr3g0129061 | 41.824 | 318 | 168 | 7 | 13 | 322 | 14 | 322 | 1.21e-74 | 232 |
| Msa0039640 | MtrunA17_Chr4g0013201 | 40.728 | 302 | 168 | 4 | 25 | 322 | 44 | 338 | 1.83e-74 | 232 |
| Msa0039640 | MtrunA17_Chr2g0320061 | 39.441 | 322 | 180 | 8 | 8 | 322 | 5 | 318 | 2.24e-74 | 231 |
| Msa0039640 | MtrunA17_Chr4g0053871 | 42.138 | 318 | 166 | 8 | 12 | 321 | 16 | 323 | 2.29e-74 | 231 |
| Msa0039640 | MtrunA17_Chr2g0320031 | 38.602 | 329 | 185 | 7 | 1 | 322 | 1 | 319 | 4.01e-74 | 231 |
| Msa0039640 | MtrunA17_Chr4g0043391 | 40.000 | 325 | 177 | 7 | 10 | 322 | 6 | 324 | 4.32e-74 | 231 |
| Msa0039640 | MtrunA17_Chr7g0254231 | 40.333 | 300 | 169 | 3 | 25 | 322 | 20 | 311 | 4.39e-74 | 230 |
| Msa0039640 | MtrunA17_Chr3g0107881 | 41.231 | 325 | 175 | 9 | 7 | 322 | 7 | 324 | 5.60e-74 | 231 |
| Msa0039640 | MtrunA17_Chr2g0292151 | 40.063 | 317 | 184 | 4 | 12 | 322 | 14 | 330 | 7.08e-74 | 231 |
| Msa0039640 | MtrunA17_Chr4g0063671 | 38.941 | 321 | 183 | 5 | 12 | 322 | 3 | 320 | 7.17e-74 | 230 |
| Msa0039640 | MtrunA17_Chr4g0046131 | 39.735 | 302 | 173 | 5 | 26 | 318 | 41 | 342 | 2.52e-73 | 229 |
| Msa0039640 | MtrunA17_Chr2g0292101 | 40.789 | 304 | 174 | 4 | 25 | 322 | 23 | 326 | 5.26e-73 | 229 |
| Msa0039640 | MtrunA17_Chr4g0038171 | 39.130 | 322 | 180 | 7 | 9 | 322 | 8 | 321 | 7.89e-73 | 228 |
| Msa0039640 | MtrunA17_Chr2g0320051 | 39.441 | 322 | 180 | 8 | 8 | 322 | 5 | 318 | 1.09e-72 | 227 |
| Msa0039640 | MtrunA17_Chr2g0292261 | 39.542 | 306 | 179 | 4 | 23 | 322 | 25 | 330 | 4.75e-72 | 226 |
| Msa0039640 | MtrunA17_Chr4g0038161 | 39.752 | 322 | 176 | 7 | 12 | 322 | 6 | 320 | 1.16e-70 | 222 |
| Msa0039640 | MtrunA17_Chr2g0292291 | 40.584 | 308 | 174 | 6 | 23 | 322 | 26 | 332 | 2.06e-70 | 222 |
| Msa0039640 | MtrunA17_Chr5g0421411 | 42.553 | 282 | 149 | 8 | 52 | 322 | 6 | 285 | 2.34e-70 | 220 |
| Msa0039640 | MtrunA17_Chr7g0244451 | 38.413 | 315 | 181 | 5 | 13 | 322 | 10 | 316 | 2.92e-70 | 221 |
| Msa0039640 | MtrunA17_Chr4g0013191 | 40.924 | 303 | 169 | 6 | 25 | 322 | 43 | 340 | 3.81e-70 | 221 |
| Msa0039640 | MtrunA17_Chr4g0038151 | 39.869 | 306 | 169 | 7 | 25 | 322 | 23 | 321 | 5.62e-70 | 220 |
| Msa0039640 | MtrunA17_Chr4g0076211 | 40.678 | 295 | 166 | 3 | 31 | 322 | 45 | 333 | 6.25e-70 | 221 |
| Msa0039640 | MtrunA17_Chr7g0224371 | 40.741 | 297 | 162 | 7 | 31 | 322 | 35 | 322 | 1.04e-69 | 219 |
| Msa0039640 | MtrunA17_Chr4g0072091 | 40.667 | 300 | 168 | 5 | 26 | 318 | 23 | 319 | 2.67e-69 | 218 |
| Msa0039640 | MtrunA17_Chr4g0075241 | 36.280 | 328 | 195 | 8 | 3 | 322 | 6 | 327 | 1.41e-68 | 217 |
| Msa0039640 | MtrunA17_Chr3g0136751 | 39.934 | 303 | 174 | 4 | 25 | 322 | 23 | 322 | 4.91e-68 | 215 |
| Msa0039640 | MtrunA17_Chr2g0279061 | 43.798 | 258 | 136 | 3 | 71 | 322 | 12 | 266 | 3.03e-67 | 211 |
| Msa0039640 | MtrunA17_Chr6g0467161 | 35.000 | 340 | 195 | 7 | 1 | 322 | 5 | 336 | 9.24e-67 | 213 |
| Msa0039640 | MtrunA17_Chr2g0296621 | 38.926 | 298 | 166 | 5 | 31 | 322 | 54 | 341 | 1.55e-66 | 212 |
| Msa0039640 | MtrunA17_Chr6g0467121 | 38.700 | 323 | 173 | 7 | 14 | 322 | 52 | 363 | 1.43e-65 | 211 |
| Msa0039640 | MtrunA17_Chr2g0329641 | 37.908 | 306 | 180 | 5 | 24 | 322 | 33 | 335 | 2.25e-65 | 209 |
| Msa0039640 | MtrunA17_Chr2g0278671 | 36.688 | 308 | 183 | 6 | 23 | 322 | 20 | 323 | 1.70e-63 | 204 |
| Msa0039640 | MtrunA17_Chr2g0316481 | 36.000 | 350 | 186 | 7 | 4 | 318 | 56 | 402 | 2.06e-62 | 203 |
| Msa0039640 | MtrunA17_Chr2g0316831 | 35.429 | 350 | 188 | 7 | 4 | 318 | 92 | 438 | 2.40e-61 | 201 |
| Msa0039640 | MtrunA17_Chr5g0413051 | 36.013 | 311 | 190 | 6 | 21 | 322 | 67 | 377 | 3.69e-61 | 199 |
| Msa0039640 | MtrunA17_Chr2g0316791 | 35.143 | 350 | 189 | 7 | 4 | 318 | 56 | 402 | 7.21e-61 | 199 |
| Msa0039640 | MtrunA17_Chr2g0316191 | 34.473 | 351 | 191 | 7 | 4 | 318 | 56 | 403 | 4.89e-59 | 194 |
| Msa0039640 | MtrunA17_Chr4g0074851 | 34.769 | 325 | 201 | 4 | 4 | 322 | 9 | 328 | 3.42e-58 | 190 |
| Msa0039640 | MtrunA17_Chr1g0181511 | 34.754 | 305 | 188 | 4 | 24 | 322 | 24 | 323 | 1.16e-57 | 189 |
| Msa0039640 | MtrunA17_Chr5g0432401 | 36.364 | 319 | 147 | 8 | 12 | 321 | 14 | 285 | 7.09e-57 | 185 |
| Msa0039640 | MtrunA17_Chr2g0311251 | 34.125 | 337 | 177 | 8 | 25 | 321 | 9 | 340 | 7.58e-56 | 184 |
| Msa0039640 | MtrunA17_Chr6g0467251 | 35.811 | 296 | 179 | 4 | 27 | 318 | 36 | 324 | 2.15e-55 | 183 |
| Msa0039640 | MtrunA17_Chr1g0181431 | 34.211 | 304 | 189 | 4 | 25 | 322 | 25 | 323 | 9.26e-55 | 181 |
| Msa0039640 | MtrunA17_Chr1g0181481 | 34.098 | 305 | 190 | 4 | 24 | 322 | 24 | 323 | 1.46e-53 | 178 |
| Msa0039640 | MtrunA17_Chr2g0311241 | 30.933 | 375 | 181 | 7 | 25 | 322 | 58 | 431 | 9.55e-53 | 179 |
| Msa0039640 | MtrunA17_Chr4g0004591 | 32.075 | 318 | 154 | 5 | 27 | 321 | 77 | 355 | 6.03e-48 | 164 |
| Msa0039640 | MtrunA17_Chr2g0316811 | 33.730 | 252 | 146 | 5 | 4 | 237 | 30 | 278 | 3.15e-42 | 149 |
| Msa0039640 | MtrunA17_Chr2g0292281 | 40.183 | 219 | 114 | 6 | 110 | 322 | 9 | 216 | 1.07e-41 | 145 |
| Msa0039640 | MtrunA17_Chr2g0316141 | 33.101 | 287 | 137 | 8 | 73 | 322 | 11 | 279 | 1.31e-36 | 132 |
| Msa0039640 | MtrunA17_Chr2g0316181 | 33.101 | 287 | 137 | 8 | 73 | 322 | 11 | 279 | 1.31e-36 | 132 |
| Msa0039640 | MtrunA17_Chr3g0114461 | 38.000 | 200 | 112 | 6 | 127 | 322 | 1 | 192 | 5.38e-36 | 128 |
| Msa0039640 | MtrunA17_Chr3g0114491 | 49.541 | 109 | 54 | 1 | 26 | 133 | 17 | 125 | 5.28e-29 | 108 |
| Msa0039640 | MtrunA17_Chr5g0432321 | 40.323 | 124 | 65 | 3 | 147 | 269 | 17 | 132 | 2.46e-23 | 93.6 |
| Msa0039640 | MtrunA17_Chr6g0468731 | 58.571 | 70 | 26 | 1 | 66 | 135 | 22 | 88 | 3.78e-22 | 89.0 |
| Msa0039640 | MtrunA17_Chr1g0181501 | 30.729 | 192 | 121 | 5 | 137 | 322 | 4 | 189 | 5.66e-22 | 91.7 |
| Msa0039640 | MtrunA17_Chr3g0104101 | 38.194 | 144 | 76 | 6 | 189 | 322 | 9 | 149 | 2.58e-21 | 88.6 |
| Msa0039640 | MtrunA17_Chr7g0254181 | 45.631 | 103 | 54 | 1 | 89 | 191 | 22 | 122 | 1.60e-20 | 86.7 |
| Msa0039640 | MtrunA17_Chr1g0181491 | 37.607 | 117 | 72 | 1 | 19 | 135 | 4 | 119 | 2.20e-19 | 83.2 |
| Msa0039640 | MtrunA17_Chr7g0254171 | 47.222 | 72 | 38 | 0 | 72 | 143 | 3 | 74 | 3.70e-16 | 74.3 |
| Msa0039640 | MtrunA17_Chr2g0316771 | 30.114 | 176 | 91 | 3 | 175 | 318 | 7 | 182 | 5.17e-16 | 75.1 |
| Msa0039640 | MtrunA17_Chr1g0196191 | 53.030 | 66 | 31 | 0 | 69 | 134 | 27 | 92 | 1.40e-14 | 70.5 |
| Msa0039640 | MtrunA17_Chr4g0013811 | 43.243 | 74 | 41 | 1 | 136 | 208 | 5 | 78 | 2.58e-13 | 64.7 |
| Msa0039640 | MtrunA17_Chr7g0268491 | 43.750 | 80 | 40 | 3 | 246 | 322 | 20 | 97 | 9.55e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0039640 | AT5G51890.1 | 69.304 | 316 | 90 | 2 | 14 | 322 | 7 | 322 | 8.07e-166 | 464 |
| Msa0039640 | AT5G42180.1 | 55.696 | 316 | 137 | 2 | 8 | 321 | 2 | 316 | 1.87e-124 | 359 |
| Msa0039640 | AT4G33420.1 | 46.130 | 323 | 161 | 5 | 4 | 322 | 12 | 325 | 1.03e-91 | 276 |
| Msa0039640 | AT4G33420.2 | 46.130 | 323 | 161 | 5 | 4 | 322 | 59 | 372 | 3.92e-91 | 276 |
| Msa0039640 | AT3G01190.1 | 43.450 | 313 | 170 | 6 | 14 | 322 | 12 | 321 | 3.68e-88 | 267 |
| Msa0039640 | AT4G16270.1 | 47.279 | 294 | 152 | 3 | 32 | 322 | 55 | 348 | 1.47e-87 | 266 |
| Msa0039640 | AT5G19890.1 | 43.574 | 319 | 169 | 4 | 12 | 322 | 12 | 327 | 2.82e-87 | 265 |
| Msa0039640 | AT1G05260.1 | 45.066 | 304 | 161 | 5 | 24 | 322 | 23 | 325 | 5.78e-87 | 264 |
| Msa0039640 | AT5G15180.1 | 42.667 | 300 | 166 | 5 | 27 | 322 | 32 | 329 | 3.59e-85 | 259 |
| Msa0039640 | AT4G11290.1 | 43.711 | 318 | 171 | 6 | 12 | 322 | 10 | 326 | 4.68e-85 | 259 |
| Msa0039640 | AT3G21770.1 | 43.234 | 303 | 166 | 5 | 23 | 320 | 25 | 326 | 2.30e-84 | 258 |
| Msa0039640 | AT4G36430.1 | 43.092 | 304 | 166 | 5 | 25 | 322 | 28 | 330 | 5.45e-84 | 257 |
| Msa0039640 | AT2G22420.1 | 42.587 | 317 | 177 | 4 | 10 | 322 | 4 | 319 | 1.23e-83 | 256 |
| Msa0039640 | AT5G06720.1 | 40.881 | 318 | 180 | 5 | 12 | 322 | 17 | 333 | 2.64e-83 | 255 |
| Msa0039640 | AT5G06730.1 | 40.881 | 318 | 180 | 5 | 12 | 322 | 18 | 334 | 8.55e-83 | 254 |
| Msa0039640 | AT5G14130.1 | 43.810 | 315 | 168 | 6 | 14 | 322 | 19 | 330 | 1.79e-82 | 253 |
| Msa0039640 | AT5G66390.1 | 42.991 | 321 | 170 | 7 | 14 | 322 | 14 | 333 | 7.18e-82 | 251 |
| Msa0039640 | AT5G14130.2 | 43.810 | 315 | 168 | 6 | 14 | 322 | 60 | 371 | 9.44e-82 | 252 |
| Msa0039640 | AT1G05240.1 | 42.715 | 302 | 165 | 5 | 27 | 322 | 26 | 325 | 3.13e-81 | 249 |
| Msa0039640 | AT1G05250.1 | 42.715 | 302 | 165 | 5 | 27 | 322 | 26 | 325 | 3.13e-81 | 249 |
| Msa0039640 | AT4G17690.1 | 44.373 | 311 | 162 | 6 | 18 | 322 | 17 | 322 | 4.28e-81 | 249 |
| Msa0039640 | AT2G18150.1 | 38.788 | 330 | 181 | 6 | 13 | 322 | 8 | 336 | 4.39e-80 | 247 |
| Msa0039640 | AT3G50990.1 | 42.188 | 320 | 177 | 6 | 10 | 322 | 23 | 341 | 6.05e-80 | 247 |
| Msa0039640 | AT5G40150.1 | 43.322 | 307 | 161 | 6 | 23 | 322 | 28 | 328 | 6.06e-80 | 246 |
| Msa0039640 | AT5G17820.1 | 40.823 | 316 | 175 | 5 | 10 | 322 | 7 | 313 | 3.13e-79 | 244 |
| Msa0039640 | AT1G44970.1 | 42.763 | 304 | 168 | 5 | 25 | 322 | 43 | 346 | 7.42e-79 | 244 |
| Msa0039640 | AT5G05340.1 | 41.830 | 306 | 163 | 6 | 24 | 322 | 27 | 324 | 1.04e-78 | 243 |
| Msa0039640 | AT3G28200.1 | 41.503 | 306 | 167 | 5 | 23 | 322 | 17 | 316 | 3.45e-78 | 241 |
| Msa0039640 | AT5G17820.2 | 40.823 | 316 | 175 | 5 | 10 | 322 | 60 | 366 | 6.16e-78 | 243 |
| Msa0039640 | AT4G08770.1 | 43.269 | 312 | 165 | 6 | 21 | 322 | 18 | 327 | 7.04e-78 | 242 |
| Msa0039640 | AT2G38380.1 | 42.857 | 308 | 167 | 6 | 23 | 322 | 27 | 333 | 1.08e-77 | 241 |
| Msa0039640 | AT1G71695.1 | 42.715 | 302 | 161 | 5 | 27 | 322 | 44 | 339 | 1.34e-77 | 241 |
| Msa0039640 | AT4G31760.1 | 39.623 | 318 | 178 | 5 | 13 | 322 | 15 | 326 | 2.20e-77 | 239 |
| Msa0039640 | AT3G03670.1 | 39.308 | 318 | 188 | 3 | 9 | 322 | 5 | 321 | 3.05e-77 | 239 |
| Msa0039640 | AT3G49960.1 | 42.633 | 319 | 173 | 7 | 13 | 322 | 12 | 329 | 4.37e-77 | 239 |
| Msa0039640 | AT2G18140.1 | 40.129 | 309 | 178 | 5 | 20 | 322 | 28 | 335 | 7.78e-77 | 239 |
| Msa0039640 | AT4G08780.1 | 42.308 | 312 | 168 | 6 | 21 | 322 | 18 | 327 | 1.28e-76 | 238 |
| Msa0039640 | AT2G38390.1 | 41.883 | 308 | 170 | 6 | 23 | 322 | 27 | 333 | 4.02e-76 | 237 |
| Msa0039640 | AT3G32980.1 | 42.258 | 310 | 171 | 5 | 21 | 322 | 25 | 334 | 4.30e-76 | 237 |
| Msa0039640 | AT4G37530.1 | 41.234 | 308 | 174 | 4 | 22 | 322 | 22 | 329 | 7.45e-76 | 236 |
| Msa0039640 | AT5G64120.1 | 41.837 | 294 | 165 | 3 | 31 | 322 | 39 | 328 | 8.23e-76 | 236 |
| Msa0039640 | AT5G47000.1 | 41.250 | 320 | 175 | 6 | 8 | 318 | 11 | 326 | 1.01e-75 | 236 |
| Msa0039640 | AT4G26010.1 | 41.587 | 315 | 167 | 8 | 13 | 322 | 7 | 309 | 1.42e-75 | 234 |
| Msa0039640 | AT3G49120.1 | 42.903 | 310 | 169 | 5 | 21 | 322 | 26 | 335 | 1.90e-75 | 236 |
| Msa0039640 | AT5G58390.1 | 40.439 | 319 | 174 | 7 | 12 | 322 | 6 | 316 | 2.64e-75 | 234 |
| Msa0039640 | AT4G26010.2 | 41.587 | 315 | 167 | 8 | 13 | 322 | 35 | 337 | 3.34e-75 | 234 |
| Msa0039640 | AT2G41480.1 | 40.312 | 320 | 178 | 7 | 12 | 322 | 13 | 328 | 1.82e-74 | 232 |
| Msa0039640 | AT2G24800.1 | 42.763 | 304 | 165 | 5 | 25 | 322 | 29 | 329 | 2.06e-74 | 232 |
| Msa0039640 | AT2G18980.1 | 40.123 | 324 | 182 | 6 | 7 | 322 | 4 | 323 | 3.79e-74 | 231 |
| Msa0039640 | AT1G68850.1 | 41.234 | 308 | 167 | 8 | 27 | 322 | 30 | 335 | 8.16e-74 | 231 |
| Msa0039640 | AT5G67400.1 | 42.395 | 309 | 167 | 7 | 23 | 322 | 23 | 329 | 1.93e-73 | 230 |
| Msa0039640 | AT3G49110.1 | 41.613 | 310 | 173 | 5 | 21 | 322 | 27 | 336 | 3.49e-73 | 230 |
| Msa0039640 | AT1G14550.1 | 40.938 | 320 | 173 | 8 | 12 | 322 | 9 | 321 | 1.56e-72 | 227 |
| Msa0039640 | AT2G34060.1 | 39.803 | 304 | 174 | 5 | 26 | 320 | 41 | 344 | 1.74e-72 | 228 |
| Msa0039640 | AT4G33870.1 | 37.313 | 335 | 172 | 5 | 22 | 318 | 63 | 397 | 2.39e-72 | 229 |
| Msa0039640 | AT5G19880.1 | 40.432 | 324 | 183 | 7 | 9 | 322 | 6 | 329 | 4.25e-72 | 226 |
| Msa0039640 | AT5G58400.1 | 39.130 | 322 | 178 | 8 | 10 | 322 | 13 | 325 | 4.39e-72 | 226 |
| Msa0039640 | AT1G49570.1 | 40.066 | 302 | 172 | 6 | 25 | 318 | 46 | 346 | 8.88e-71 | 224 |
| Msa0039640 | AT4G37520.1 | 39.672 | 305 | 177 | 4 | 25 | 322 | 25 | 329 | 1.48e-70 | 222 |
| Msa0039640 | AT1G34510.1 | 40.066 | 302 | 165 | 6 | 25 | 322 | 20 | 309 | 1.84e-70 | 221 |
| Msa0039640 | AT2G35380.1 | 40.728 | 302 | 169 | 6 | 31 | 322 | 34 | 335 | 3.22e-70 | 222 |
| Msa0039640 | AT2G39040.1 | 40.777 | 309 | 172 | 7 | 24 | 322 | 43 | 350 | 6.46e-70 | 221 |
| Msa0039640 | AT1G14540.1 | 38.245 | 319 | 184 | 6 | 10 | 322 | 4 | 315 | 6.93e-70 | 220 |
| Msa0039640 | AT4G30170.1 | 38.689 | 305 | 176 | 5 | 25 | 322 | 25 | 325 | 5.41e-69 | 218 |
| Msa0039640 | AT5G39580.1 | 38.871 | 319 | 185 | 7 | 9 | 322 | 6 | 319 | 9.35e-69 | 217 |
| Msa0039640 | AT4G37520.2 | 39.344 | 305 | 175 | 5 | 25 | 322 | 25 | 326 | 1.22e-67 | 215 |
| Msa0039640 | AT1G30870.1 | 39.145 | 304 | 168 | 6 | 27 | 322 | 51 | 345 | 1.91e-67 | 215 |
| Msa0039640 | AT1G24110.1 | 38.050 | 318 | 188 | 6 | 13 | 322 | 6 | 322 | 1.80e-66 | 212 |
| Msa0039640 | AT5G64110.1 | 39.506 | 324 | 178 | 8 | 12 | 322 | 12 | 330 | 2.30e-66 | 211 |
| Msa0039640 | AT4G37530.2 | 42.912 | 261 | 144 | 3 | 22 | 277 | 22 | 282 | 2.41e-66 | 210 |
| Msa0039640 | AT5G64100.1 | 39.000 | 300 | 172 | 5 | 28 | 322 | 38 | 331 | 2.56e-65 | 209 |
| Msa0039640 | AT4G25980.1 | 35.220 | 318 | 195 | 5 | 13 | 322 | 12 | 326 | 4.33e-65 | 208 |
| Msa0039640 | AT5G22410.1 | 34.862 | 327 | 188 | 8 | 8 | 319 | 6 | 322 | 4.63e-64 | 206 |
| Msa0039640 | AT3G17070.1 | 35.948 | 306 | 182 | 7 | 27 | 322 | 38 | 339 | 5.24e-62 | 201 |
| Msa0039640 | AT1G77100.1 | 36.137 | 321 | 189 | 7 | 10 | 322 | 7 | 319 | 3.32e-60 | 195 |
| Msa0039640 | AT2G43480.1 | 35.144 | 313 | 190 | 6 | 19 | 322 | 27 | 335 | 3.38e-59 | 193 |
| Msa0039640 | AT4G21960.1 | 36.076 | 316 | 189 | 5 | 15 | 322 | 17 | 327 | 9.92e-59 | 192 |
| Msa0039640 | AT5G24070.1 | 34.821 | 336 | 193 | 8 | 8 | 322 | 5 | 335 | 1.61e-58 | 192 |
| Msa0039640 | AT2G37130.1 | 35.256 | 312 | 190 | 5 | 18 | 322 | 21 | 327 | 3.15e-56 | 185 |
| Msa0039640 | AT2G37130.2 | 35.333 | 300 | 182 | 5 | 30 | 322 | 2 | 296 | 1.83e-53 | 177 |
| Msa0039640 | AT2G35380.2 | 40.408 | 245 | 136 | 6 | 88 | 322 | 3 | 247 | 5.47e-49 | 164 |
| Msa0039640 | AT4G25980.2 | 38.785 | 214 | 113 | 3 | 18 | 215 | 62 | 273 | 3.76e-47 | 160 |
| Msa0039640 | AT3G17070.2 | 34.266 | 286 | 168 | 9 | 47 | 322 | 1 | 276 | 2.19e-46 | 158 |
| Msa0039640 | AT5G39580.2 | 41.667 | 192 | 108 | 2 | 9 | 199 | 6 | 194 | 1.63e-45 | 155 |
| Msa0039640 | AT2G24800.2 | 45.665 | 173 | 88 | 3 | 25 | 196 | 29 | 196 | 1.43e-42 | 147 |
| Msa0039640 | AT3G42570.1 | 35.238 | 105 | 66 | 1 | 88 | 190 | 43 | 147 | 4.96e-13 | 66.2 |
Find 98 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATGTCGATTTAATATT+TGG | 0.083993 | 1_1:-69513847 | None:intergenic |
| AAAATACGGGCTGGGACTTT+TGG | 0.229987 | 1_1:-69512272 | None:intergenic |
| AAAGATATGGTGACTTTATC+TGG | 0.249055 | 1_1:+69513229 | Msa0039640:CDS |
| CTCACATTGTTCTTCCTTTG+AGG | 0.255401 | 1_1:+69513270 | Msa0039640:CDS |
| TCTGCGTAGTCTGTAAGTTT+TGG | 0.257376 | 1_1:-69514004 | None:intergenic |
| TATTCCATGTTGACGGCCTT+CGG | 0.289036 | 1_1:+69513931 | Msa0039640:three_prime_UTR |
| CCAGGAACTGTCCTGCGTTT+TGG | 0.289159 | 1_1:-69513393 | None:intergenic |
| AAGTCTCACTTCTCCATTAT+CGG | 0.305966 | 1_1:-69513608 | None:intergenic |
| TTCAATTCTATGAATGATTA+CGG | 0.317662 | 1_1:+69513959 | Msa0039640:three_prime_UTR |
| AATGATCGAACTGAGATATT+AGG | 0.321061 | 1_1:-69512503 | None:intergenic |
| CCAAAACGCAGGACAGTTCC+TGG | 0.338284 | 1_1:+69513393 | Msa0039640:CDS |
| AGCTTTGCTAAGAGAGGGTT+GGG | 0.350687 | 1_1:+69513202 | Msa0039640:CDS |
| CATTTACCATTCTTGATATG+AGG | 0.364679 | 1_1:-69513775 | None:intergenic |
| CCATATTGGAAAGTACTAAA+AGG | 0.374080 | 1_1:+69513097 | Msa0039640:CDS |
| AATCTAAGAGGCTCCGATAA+TGG | 0.377790 | 1_1:+69513595 | Msa0039640:CDS |
| AGCTAAAGCAAAGCTTGAAT+TGG | 0.379670 | 1_1:+69512541 | Msa0039640:CDS |
| ATTCCATGTTGACGGCCTTC+GGG | 0.380519 | 1_1:+69513932 | Msa0039640:three_prime_UTR |
| GACAGTCTGGAGGTCCATAT+TGG | 0.388021 | 1_1:+69513083 | Msa0039640:intron |
| GTCTTTCTCTGCTTGGTTAG+TGG | 0.398136 | 1_1:-69512474 | None:intergenic |
| CTATTACCTGGTTTATCAAA+TGG | 0.400480 | 1_1:+69512091 | Msa0039640:exon |
| TGACCAAACATGTCCACAAT+TGG | 0.401881 | 1_1:+69512205 | Msa0039640:CDS |
| AGCCTTCTATTCCATGTTGA+CGG | 0.403306 | 1_1:+69513924 | Msa0039640:three_prime_UTR |
| GTTGGCCTACATTCAAGGTT+GGG | 0.404646 | 1_1:-69513171 | None:intergenic |
| GGCCGTCAACATGGAATAGA+AGG | 0.408200 | 1_1:-69513926 | None:intergenic |
| GAGAAGTGAGACTTAATTGC+AGG | 0.408777 | 1_1:+69513617 | Msa0039640:CDS |
| CTTCCATGACTGTTTCATAA+GGG | 0.409975 | 1_1:+69512304 | Msa0039640:CDS |
| TCTTCCATGACTGTTTCATA+AGG | 0.417437 | 1_1:+69512303 | Msa0039640:CDS |
| AATGAGTTGGCCTACATTCA+AGG | 0.421076 | 1_1:-69513176 | None:intergenic |
| TCTTCCGACCAGTCACTTGT+TGG | 0.422695 | 1_1:+69513481 | Msa0039640:CDS |
| GAGGGCCGTCTTTCTCTGCT+TGG | 0.432126 | 1_1:-69512481 | None:intergenic |
| TCAATTCTATGAATGATTAC+GGG | 0.436272 | 1_1:+69513960 | Msa0039640:three_prime_UTR |
| ATGGGCATGAAGTTCAGCTT+TGG | 0.440243 | 1_1:-69512177 | None:intergenic |
| GGAAGAACATCCTCAAAATA+CGG | 0.446099 | 1_1:-69512286 | None:intergenic |
| ACATGTTTGGTCATAGTAAT+GGG | 0.452448 | 1_1:-69512195 | None:intergenic |
| TGTCCAATTGTGGACATGTT+TGG | 0.453516 | 1_1:-69512208 | None:intergenic |
| ATGCGATGCATCAGTGTTGC+TGG | 0.453989 | 1_1:+69512442 | Msa0039640:CDS |
| CAAGGTTGGGGCTGGTAAGT+TGG | 0.465173 | 1_1:-69513158 | None:intergenic |
| GTAAAGAAGAGGAGAAGGAT+TGG | 0.465569 | 1_1:-69512140 | None:intergenic |
| TCAGCACAAGAAACAATGCC+TGG | 0.469419 | 1_1:-69512569 | None:intergenic |
| CCTACATTCAAGGTTGGGGC+TGG | 0.480478 | 1_1:-69513166 | None:intergenic |
| TTGGCCTACATTCAAGGTTG+GGG | 0.486625 | 1_1:-69513170 | None:intergenic |
| GAGCTTTGCTAAGAGAGGGT+TGG | 0.490396 | 1_1:+69513201 | Msa0039640:CDS |
| GAGAACTGTAAAATGAGGAT+TGG | 0.494268 | 1_1:-69512065 | None:intergenic |
| AACATCCTCAAAATACGGGC+TGG | 0.495747 | 1_1:-69512281 | None:intergenic |
| AAACAACTGCTAGCTGGAAA+AGG | 0.497283 | 1_1:+69513451 | Msa0039640:CDS |
| TATTACAAACAACTGCTAGC+TGG | 0.500242 | 1_1:+69513445 | Msa0039640:CDS |
| AGGGTTGGGAGTTAAAGATA+TGG | 0.501982 | 1_1:+69513216 | Msa0039640:CDS |
| TGTATACCTCATATCAAGAA+TGG | 0.505829 | 1_1:+69513769 | Msa0039640:three_prime_UTR |
| AAGCTTGAATTGGCTTGCCC+AGG | 0.507178 | 1_1:+69512551 | Msa0039640:CDS |
| GTACTAAAAGGACGGAAAGA+TGG | 0.509250 | 1_1:+69513109 | Msa0039640:CDS |
| AGTTGGCCTACATTCAAGGT+TGG | 0.511821 | 1_1:-69513172 | None:intergenic |
| TTTATCTGGAGGACACACTC+TGG | 0.512594 | 1_1:+69513243 | Msa0039640:CDS |
| AGCAAGAGATGTGGTTGCCA+TGG | 0.519204 | 1_1:+69512607 | Msa0039640:CDS |
| TTGGTGATTACAGAACTAGA+TGG | 0.519606 | 1_1:+69513500 | Msa0039640:CDS |
| TTCAGAGCTTTGCTAAGAGA+GGG | 0.532283 | 1_1:+69513197 | Msa0039640:CDS |
| GATCGAACTGAGATATTAGG+AGG | 0.532320 | 1_1:-69512500 | None:intergenic |
| ACAGTTCTCGAGCTATTACC+TGG | 0.533419 | 1_1:+69512079 | Msa0039640:five_prime_UTR |
| TACATTTATTTCAACATGAG+TGG | 0.534739 | 1_1:-69513738 | None:intergenic |
| TTATCTGGAGGACACACTCT+GGG | 0.536646 | 1_1:+69513244 | Msa0039640:CDS |
| GGTTGGGGCTGGTAAGTTGG+CGG | 0.537926 | 1_1:-69513155 | None:intergenic |
| ATGCAAATATTGTAAAGAAG+AGG | 0.541984 | 1_1:-69512151 | None:intergenic |
| AGCTCGAGAACTGTAAAATG+AGG | 0.542145 | 1_1:-69512070 | None:intergenic |
| GACATGTTTGGTCATAGTAA+TGG | 0.542302 | 1_1:-69512196 | None:intergenic |
| TTGAAACTCGGAAATCTAAG+AGG | 0.544657 | 1_1:+69513583 | Msa0039640:CDS |
| ACACTGATGCTGTTGAGTCC+AGG | 0.545026 | 1_1:-69513411 | None:intergenic |
| GGACAAAATCATTTCAGAGA+CGG | 0.552916 | 1_1:+69512226 | Msa0039640:CDS |
| TAGCAAAGCTCTGAATGAGT+TGG | 0.558089 | 1_1:-69513189 | None:intergenic |
| ATTCAGAGCTTTGCTAAGAG+AGG | 0.558792 | 1_1:+69513196 | Msa0039640:CDS |
| TGGCCCGAAGGCCGTCAACA+TGG | 0.562533 | 1_1:-69513935 | None:intergenic |
| ATTATGTAGACGAGCCTCAA+AGG | 0.566429 | 1_1:-69513284 | None:intergenic |
| GAAGAACATCCTCAAAATAC+GGG | 0.568324 | 1_1:-69512285 | None:intergenic |
| TGTAATCACCAACAAGTGAC+TGG | 0.570253 | 1_1:-69513489 | None:intergenic |
| AATCATTCATAGAATTGAAG+TGG | 0.574000 | 1_1:-69513955 | None:intergenic |
| CCAGCCCCAACCTTGAATGT+AGG | 0.575023 | 1_1:+69513166 | Msa0039640:CDS |
| GCAGCTTCAATGTTGAAACT+CGG | 0.579318 | 1_1:+69513571 | Msa0039640:CDS |
| TAAAAGGACGGAAAGATGGA+AGG | 0.581132 | 1_1:+69513113 | Msa0039640:CDS |
| ATATTGTAAAGAAGAGGAGA+AGG | 0.581746 | 1_1:-69512145 | None:intergenic |
| ACATCCTCAAAATACGGGCT+GGG | 0.585381 | 1_1:-69512280 | None:intergenic |
| GAAGAGGAGAAGGATTGGAA+AGG | 0.589858 | 1_1:-69512135 | None:intergenic |
| CAAATTCAGTGTTCAACCGT+GGG | 0.598938 | 1_1:-69513330 | None:intergenic |
| AAAAGGACGGAAAGATGGAA+GGG | 0.602051 | 1_1:+69513114 | Msa0039640:CDS |
| ATTGGAAAGTACTAAAAGGA+CGG | 0.617043 | 1_1:+69513101 | Msa0039640:CDS |
| GAAAGATGGAAGGGTATCAA+AGG | 0.620383 | 1_1:+69513123 | Msa0039640:CDS |
| CAGCACAAGAAACAATGCCT+GGG | 0.620896 | 1_1:-69512568 | None:intergenic |
| CTGTTCATGACACTGACCCA+CGG | 0.625549 | 1_1:+69513314 | Msa0039640:CDS |
| TATTTGCTCTGACAGTCTGG+AGG | 0.625944 | 1_1:+69513073 | Msa0039640:intron |
| CCAAACAACAACCAAAACGC+AGG | 0.627767 | 1_1:+69513382 | Msa0039640:CDS |
| ATCACCAACAAGTGACTGGT+CGG | 0.630373 | 1_1:-69513485 | None:intergenic |
| ATACCCTTATGAAACAGTCA+TGG | 0.637915 | 1_1:-69512307 | None:intergenic |
| AGAAGTGAGACTTAATTGCA+GGG | 0.639340 | 1_1:+69513618 | Msa0039640:CDS |
| GAGGAGCCATTTGATAAACC+AGG | 0.641043 | 1_1:-69512097 | None:intergenic |
| GCAAATTCAGTGTTCAACCG+TGG | 0.641287 | 1_1:-69513331 | None:intergenic |
| ACTAACCAAGCAGAGAAAGA+CGG | 0.648493 | 1_1:+69512476 | Msa0039640:CDS |
| AATATCGTATATAATTGTAG+TGG | 0.651415 | 1_1:-69513697 | None:intergenic |
| ATAGAATTGAAGTGGCCCGA+AGG | 0.657478 | 1_1:-69513947 | None:intergenic |
| CATTTGTGCACAATAGCATG+AGG | 0.660144 | 1_1:+69513807 | Msa0039640:three_prime_UTR |
| ATCGAACTGAGATATTAGGA+GGG | 0.667185 | 1_1:-69512499 | None:intergenic |
| GATATGGTGACTTTATCTGG+AGG | 0.710527 | 1_1:+69513232 | Msa0039640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTAATGTTCAATTAT+AGG | + | chr1_1:69512418-69512437 | Msa0039640:intron | 15.0% |
| !! | ATGATTAATGTTCAATTATA+GGG | + | chr1_1:69512419-69512438 | Msa0039640:intron | 15.0% |
| !! | AATGATTAATGTTCAATTAT+AGG | + | chr1_1:69512418-69512437 | Msa0039640:intron | 15.0% |
| !! | ATGATTAATGTTCAATTATA+GGG | + | chr1_1:69512419-69512438 | Msa0039640:intron | 15.0% |
| !!! | GTATAGTTTTTTTTACCAAT+GGG | + | chr1_1:69512382-69512401 | Msa0039640:intron | 20.0% |
| !! | GATACAATTATTGGATAAAA+TGG | - | chr1_1:69512688-69512707 | None:intergenic | 20.0% |
| !! | TAGCTTAGATAAAATTTCTT+TGG | - | chr1_1:69513005-69513024 | None:intergenic | 20.0% |
| !! | AATATCGTATATAATTGTAG+TGG | - | chr1_1:69513700-69513719 | None:intergenic | 20.0% |
| !!! | TTTGATGTCGATTTAATATT+TGG | - | chr1_1:69513850-69513869 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTTTCTTATCAA+GGG | + | chr1_1:69513885-69513904 | Msa0039640:three_prime_UTR | 20.0% |
| !! | TTCAATTCTATGAATGATTA+CGG | + | chr1_1:69513959-69513978 | Msa0039640:three_prime_UTR | 20.0% |
| !!! | GTATAGTTTTTTTTACCAAT+GGG | + | chr1_1:69512382-69512401 | Msa0039640:intron | 20.0% |
| !! | GATACAATTATTGGATAAAA+TGG | - | chr1_1:69512688-69512707 | None:intergenic | 20.0% |
| !! | TAGCTTAGATAAAATTTCTT+TGG | - | chr1_1:69513005-69513024 | None:intergenic | 20.0% |
| !! | AATATCGTATATAATTGTAG+TGG | - | chr1_1:69513700-69513719 | None:intergenic | 20.0% |
| !!! | TTTGATGTCGATTTAATATT+TGG | - | chr1_1:69513850-69513869 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTTTCTTATCAA+GGG | + | chr1_1:69513885-69513904 | Msa0039640:three_prime_UTR | 20.0% |
| !! | TTCAATTCTATGAATGATTA+CGG | + | chr1_1:69513959-69513978 | Msa0039640:three_prime_UTR | 20.0% |
| ! | ATGCAAATATTGTAAAGAAG+AGG | - | chr1_1:69512154-69512173 | None:intergenic | 25.0% |
| !!! | CGTATAGTTTTTTTTACCAA+TGG | + | chr1_1:69512381-69512400 | Msa0039640:intron | 25.0% |
| ! | ATCTTAGATAGATATTACCA+TGG | - | chr1_1:69512627-69512646 | None:intergenic | 25.0% |
| !!! | AGAAGTATCAAAATTTTAGC+AGG | - | chr1_1:69512659-69512678 | None:intergenic | 25.0% |
| !!! | GCTAAAATTTTGATACTTCT+AGG | + | chr1_1:69512659-69512678 | Msa0039640:intron | 25.0% |
| ! | ATCTAAGCTATTTAGTATAC+TGG | + | chr1_1:69513015-69513034 | Msa0039640:intron | 25.0% |
| ! | TCTAAGCTATTTAGTATACT+GGG | + | chr1_1:69513016-69513035 | Msa0039640:intron | 25.0% |
| ! | TACATTTATTTCAACATGAG+TGG | - | chr1_1:69513741-69513760 | None:intergenic | 25.0% |
| !! | CTTCTTTCATTTTCTTATCA+AGG | + | chr1_1:69513884-69513903 | Msa0039640:three_prime_UTR | 25.0% |
| ! | AATCATTCATAGAATTGAAG+TGG | - | chr1_1:69513958-69513977 | None:intergenic | 25.0% |
| ! | TCAATTCTATGAATGATTAC+GGG | + | chr1_1:69513960-69513979 | Msa0039640:three_prime_UTR | 25.0% |
| ! | ATGCAAATATTGTAAAGAAG+AGG | - | chr1_1:69512154-69512173 | None:intergenic | 25.0% |
| !!! | CGTATAGTTTTTTTTACCAA+TGG | + | chr1_1:69512381-69512400 | Msa0039640:intron | 25.0% |
| ! | ATCTTAGATAGATATTACCA+TGG | - | chr1_1:69512627-69512646 | None:intergenic | 25.0% |
| !!! | AGAAGTATCAAAATTTTAGC+AGG | - | chr1_1:69512659-69512678 | None:intergenic | 25.0% |
| !!! | GCTAAAATTTTGATACTTCT+AGG | + | chr1_1:69512659-69512678 | Msa0039640:intron | 25.0% |
| ! | ATCTAAGCTATTTAGTATAC+TGG | + | chr1_1:69513015-69513034 | Msa0039640:intron | 25.0% |
| ! | TCTAAGCTATTTAGTATACT+GGG | + | chr1_1:69513016-69513035 | Msa0039640:intron | 25.0% |
| ! | TACATTTATTTCAACATGAG+TGG | - | chr1_1:69513741-69513760 | None:intergenic | 25.0% |
| !! | CTTCTTTCATTTTCTTATCA+AGG | + | chr1_1:69513884-69513903 | Msa0039640:three_prime_UTR | 25.0% |
| ! | AATCATTCATAGAATTGAAG+TGG | - | chr1_1:69513958-69513977 | None:intergenic | 25.0% |
| ! | TCAATTCTATGAATGATTAC+GGG | + | chr1_1:69513960-69513979 | Msa0039640:three_prime_UTR | 25.0% |
| CTATTACCTGGTTTATCAAA+TGG | + | chr1_1:69512091-69512110 | Msa0039640:exon | 30.0% | |
| ATATTGTAAAGAAGAGGAGA+AGG | - | chr1_1:69512148-69512167 | None:intergenic | 30.0% | |
| ACATGTTTGGTCATAGTAAT+GGG | - | chr1_1:69512198-69512217 | None:intergenic | 30.0% | |
| ! | GAAATGATTTTGTCCAATTG+TGG | - | chr1_1:69512221-69512240 | None:intergenic | 30.0% |
| TTAGAAGATTACAAACCCAT+TGG | - | chr1_1:69512400-69512419 | None:intergenic | 30.0% | |
| AATGATCGAACTGAGATATT+AGG | - | chr1_1:69512506-69512525 | None:intergenic | 30.0% | |
| GGCATATAGGATACAATTAT+TGG | - | chr1_1:69512697-69512716 | None:intergenic | 30.0% | |
| CATACATATCTACTCTACAT+AGG | - | chr1_1:69512718-69512737 | None:intergenic | 30.0% | |
| CTATGTAGAGTAGATATGTA+TGG | + | chr1_1:69512716-69512735 | Msa0039640:intron | 30.0% | |
| ! | CCTTTTAGTACTTTCCAATA+TGG | - | chr1_1:69513100-69513119 | None:intergenic | 30.0% |
| !! | CCATATTGGAAAGTACTAAA+AGG | + | chr1_1:69513097-69513116 | Msa0039640:CDS | 30.0% |
| !! | ATTGGAAAGTACTAAAAGGA+CGG | + | chr1_1:69513101-69513120 | Msa0039640:CDS | 30.0% |
| AAAGATATGGTGACTTTATC+TGG | + | chr1_1:69513229-69513248 | Msa0039640:CDS | 30.0% | |
| !!! | GTTTTGGGCACTTATTTTTT+AGG | - | chr1_1:69513363-69513382 | None:intergenic | 30.0% |
| !!! | TTTGGTTGTTGTTTGGTTTT+GGG | - | chr1_1:69513378-69513397 | None:intergenic | 30.0% |
| !!! | TTTTGGTTGTTGTTTGGTTT+TGG | - | chr1_1:69513379-69513398 | None:intergenic | 30.0% |
| GCAAAGACAAAAAACAATCA+CGG | - | chr1_1:69513676-69513695 | None:intergenic | 30.0% | |
| TGTATACCTCATATCAAGAA+TGG | + | chr1_1:69513769-69513788 | Msa0039640:three_prime_UTR | 30.0% | |
| CATTTACCATTCTTGATATG+AGG | - | chr1_1:69513778-69513797 | None:intergenic | 30.0% | |
| CTATTACCTGGTTTATCAAA+TGG | + | chr1_1:69512091-69512110 | Msa0039640:exon | 30.0% | |
| ATATTGTAAAGAAGAGGAGA+AGG | - | chr1_1:69512148-69512167 | None:intergenic | 30.0% | |
| ACATGTTTGGTCATAGTAAT+GGG | - | chr1_1:69512198-69512217 | None:intergenic | 30.0% | |
| ! | GAAATGATTTTGTCCAATTG+TGG | - | chr1_1:69512221-69512240 | None:intergenic | 30.0% |
| TTAGAAGATTACAAACCCAT+TGG | - | chr1_1:69512400-69512419 | None:intergenic | 30.0% | |
| AATGATCGAACTGAGATATT+AGG | - | chr1_1:69512506-69512525 | None:intergenic | 30.0% | |
| GGCATATAGGATACAATTAT+TGG | - | chr1_1:69512697-69512716 | None:intergenic | 30.0% | |
| CATACATATCTACTCTACAT+AGG | - | chr1_1:69512718-69512737 | None:intergenic | 30.0% | |
| CTATGTAGAGTAGATATGTA+TGG | + | chr1_1:69512716-69512735 | Msa0039640:intron | 30.0% | |
| ! | CCTTTTAGTACTTTCCAATA+TGG | - | chr1_1:69513100-69513119 | None:intergenic | 30.0% |
| !! | CCATATTGGAAAGTACTAAA+AGG | + | chr1_1:69513097-69513116 | Msa0039640:CDS | 30.0% |
| !! | ATTGGAAAGTACTAAAAGGA+CGG | + | chr1_1:69513101-69513120 | Msa0039640:CDS | 30.0% |
| AAAGATATGGTGACTTTATC+TGG | + | chr1_1:69513229-69513248 | Msa0039640:CDS | 30.0% | |
| !!! | GTTTTGGGCACTTATTTTTT+AGG | - | chr1_1:69513363-69513382 | None:intergenic | 30.0% |
| !!! | TTTGGTTGTTGTTTGGTTTT+GGG | - | chr1_1:69513378-69513397 | None:intergenic | 30.0% |
| !!! | TTTTGGTTGTTGTTTGGTTT+TGG | - | chr1_1:69513379-69513398 | None:intergenic | 30.0% |
| GCAAAGACAAAAAACAATCA+CGG | - | chr1_1:69513676-69513695 | None:intergenic | 30.0% | |
| TGTATACCTCATATCAAGAA+TGG | + | chr1_1:69513769-69513788 | Msa0039640:three_prime_UTR | 30.0% | |
| CATTTACCATTCTTGATATG+AGG | - | chr1_1:69513778-69513797 | None:intergenic | 30.0% | |
| GAGAACTGTAAAATGAGGAT+TGG | - | chr1_1:69512068-69512087 | None:intergenic | 35.0% | |
| GACATGTTTGGTCATAGTAA+TGG | - | chr1_1:69512199-69512218 | None:intergenic | 35.0% | |
| GGACAAAATCATTTCAGAGA+CGG | + | chr1_1:69512226-69512245 | Msa0039640:CDS | 35.0% | |
| GAAGAACATCCTCAAAATAC+GGG | - | chr1_1:69512288-69512307 | None:intergenic | 35.0% | |
| GGAAGAACATCCTCAAAATA+CGG | - | chr1_1:69512289-69512308 | None:intergenic | 35.0% | |
| TCTTCCATGACTGTTTCATA+AGG | + | chr1_1:69512303-69512322 | Msa0039640:CDS | 35.0% | |
| CTTCCATGACTGTTTCATAA+GGG | + | chr1_1:69512304-69512323 | Msa0039640:CDS | 35.0% | |
| ATACCCTTATGAAACAGTCA+TGG | - | chr1_1:69512310-69512329 | None:intergenic | 35.0% | |
| ATCGAACTGAGATATTAGGA+GGG | - | chr1_1:69512502-69512521 | None:intergenic | 35.0% | |
| AGCTAAAGCAAAGCTTGAAT+TGG | + | chr1_1:69512541-69512560 | Msa0039640:CDS | 35.0% | |
| TCTACTCTACATAGGCATAT+AGG | - | chr1_1:69512710-69512729 | None:intergenic | 35.0% | |
| TATTACAAACAACTGCTAGC+TGG | + | chr1_1:69513445-69513464 | Msa0039640:CDS | 35.0% | |
| ! | TTGGTGATTACAGAACTAGA+TGG | + | chr1_1:69513500-69513519 | Msa0039640:CDS | 35.0% |
| TTGAAACTCGGAAATCTAAG+AGG | + | chr1_1:69513583-69513602 | Msa0039640:CDS | 35.0% | |
| AAGTCTCACTTCTCCATTAT+CGG | - | chr1_1:69513611-69513630 | None:intergenic | 35.0% | |
| AGAAGTGAGACTTAATTGCA+GGG | + | chr1_1:69513618-69513637 | Msa0039640:CDS | 35.0% | |
| ACTGTAAAATGAGGATTGGA+TGG | - | chr1_1:69512064-69512083 | None:intergenic | 35.0% | |
| GAGAACTGTAAAATGAGGAT+TGG | - | chr1_1:69512068-69512087 | None:intergenic | 35.0% | |
| GACATGTTTGGTCATAGTAA+TGG | - | chr1_1:69512199-69512218 | None:intergenic | 35.0% | |
| GGACAAAATCATTTCAGAGA+CGG | + | chr1_1:69512226-69512245 | Msa0039640:CDS | 35.0% | |
| GAAGAACATCCTCAAAATAC+GGG | - | chr1_1:69512288-69512307 | None:intergenic | 35.0% | |
| GGAAGAACATCCTCAAAATA+CGG | - | chr1_1:69512289-69512308 | None:intergenic | 35.0% | |
| TCTTCCATGACTGTTTCATA+AGG | + | chr1_1:69512303-69512322 | Msa0039640:CDS | 35.0% | |
| CTTCCATGACTGTTTCATAA+GGG | + | chr1_1:69512304-69512323 | Msa0039640:CDS | 35.0% | |
| ATACCCTTATGAAACAGTCA+TGG | - | chr1_1:69512310-69512329 | None:intergenic | 35.0% | |
| ATCGAACTGAGATATTAGGA+GGG | - | chr1_1:69512502-69512521 | None:intergenic | 35.0% | |
| AGCTAAAGCAAAGCTTGAAT+TGG | + | chr1_1:69512541-69512560 | Msa0039640:CDS | 35.0% | |
| TCTACTCTACATAGGCATAT+AGG | - | chr1_1:69512710-69512729 | None:intergenic | 35.0% | |
| TATTACAAACAACTGCTAGC+TGG | + | chr1_1:69513445-69513464 | Msa0039640:CDS | 35.0% | |
| ! | TTGGTGATTACAGAACTAGA+TGG | + | chr1_1:69513500-69513519 | Msa0039640:CDS | 35.0% |
| TTGAAACTCGGAAATCTAAG+AGG | + | chr1_1:69513583-69513602 | Msa0039640:CDS | 35.0% | |
| AAGTCTCACTTCTCCATTAT+CGG | - | chr1_1:69513611-69513630 | None:intergenic | 35.0% | |
| AGAAGTGAGACTTAATTGCA+GGG | + | chr1_1:69513618-69513637 | Msa0039640:CDS | 35.0% | |
| AGCTCGAGAACTGTAAAATG+AGG | - | chr1_1:69512073-69512092 | None:intergenic | 40.0% | |
| GTAAAGAAGAGGAGAAGGAT+TGG | - | chr1_1:69512143-69512162 | None:intergenic | 40.0% | |
| TGACCAAACATGTCCACAAT+TGG | + | chr1_1:69512205-69512224 | Msa0039640:CDS | 40.0% | |
| TGTCCAATTGTGGACATGTT+TGG | - | chr1_1:69512211-69512230 | None:intergenic | 40.0% | |
| !! | TTTTGGGTCATGGATAGAAG+CGG | - | chr1_1:69512258-69512277 | None:intergenic | 40.0% |
| ACTAACCAAGCAGAGAAAGA+CGG | + | chr1_1:69512476-69512495 | Msa0039640:CDS | 40.0% | |
| GATCGAACTGAGATATTAGG+AGG | - | chr1_1:69512503-69512522 | None:intergenic | 40.0% | |
| ! | TGCTCTTTTAGCAAGAGATG+TGG | + | chr1_1:69512598-69512617 | Msa0039640:CDS | 40.0% |
| GTACTAAAAGGACGGAAAGA+TGG | + | chr1_1:69513109-69513128 | Msa0039640:CDS | 40.0% | |
| TAAAAGGACGGAAAGATGGA+AGG | + | chr1_1:69513113-69513132 | Msa0039640:CDS | 40.0% | |
| AAAAGGACGGAAAGATGGAA+GGG | + | chr1_1:69513114-69513133 | Msa0039640:CDS | 40.0% | |
| !! | GAAAGATGGAAGGGTATCAA+AGG | + | chr1_1:69513123-69513142 | Msa0039640:CDS | 40.0% |
| ! | AATGAGTTGGCCTACATTCA+AGG | - | chr1_1:69513179-69513198 | None:intergenic | 40.0% |
| !! | TAGCAAAGCTCTGAATGAGT+TGG | - | chr1_1:69513192-69513211 | None:intergenic | 40.0% |
| ATTCAGAGCTTTGCTAAGAG+AGG | + | chr1_1:69513196-69513215 | Msa0039640:CDS | 40.0% | |
| TTCAGAGCTTTGCTAAGAGA+GGG | + | chr1_1:69513197-69513216 | Msa0039640:CDS | 40.0% | |
| AGGGTTGGGAGTTAAAGATA+TGG | + | chr1_1:69513216-69513235 | Msa0039640:CDS | 40.0% | |
| GATATGGTGACTTTATCTGG+AGG | + | chr1_1:69513232-69513251 | Msa0039640:CDS | 40.0% | |
| CTCACATTGTTCTTCCTTTG+AGG | + | chr1_1:69513270-69513289 | Msa0039640:CDS | 40.0% | |
| ATTATGTAGACGAGCCTCAA+AGG | - | chr1_1:69513287-69513306 | None:intergenic | 40.0% | |
| CAAATTCAGTGTTCAACCGT+GGG | - | chr1_1:69513333-69513352 | None:intergenic | 40.0% | |
| AAACAACTGCTAGCTGGAAA+AGG | + | chr1_1:69513451-69513470 | Msa0039640:CDS | 40.0% | |
| TGTAATCACCAACAAGTGAC+TGG | - | chr1_1:69513492-69513511 | None:intergenic | 40.0% | |
| GCAGCTTCAATGTTGAAACT+CGG | + | chr1_1:69513571-69513590 | Msa0039640:CDS | 40.0% | |
| AATCTAAGAGGCTCCGATAA+TGG | + | chr1_1:69513595-69513614 | Msa0039640:CDS | 40.0% | |
| GAGAAGTGAGACTTAATTGC+AGG | + | chr1_1:69513617-69513636 | Msa0039640:CDS | 40.0% | |
| CATTTGTGCACAATAGCATG+AGG | + | chr1_1:69513807-69513826 | Msa0039640:three_prime_UTR | 40.0% | |
| AGCCTTCTATTCCATGTTGA+CGG | + | chr1_1:69513924-69513943 | Msa0039640:three_prime_UTR | 40.0% | |
| AGCTCGAGAACTGTAAAATG+AGG | - | chr1_1:69512073-69512092 | None:intergenic | 40.0% | |
| GTAAAGAAGAGGAGAAGGAT+TGG | - | chr1_1:69512143-69512162 | None:intergenic | 40.0% | |
| TGACCAAACATGTCCACAAT+TGG | + | chr1_1:69512205-69512224 | Msa0039640:CDS | 40.0% | |
| TGTCCAATTGTGGACATGTT+TGG | - | chr1_1:69512211-69512230 | None:intergenic | 40.0% | |
| !! | TTTTGGGTCATGGATAGAAG+CGG | - | chr1_1:69512258-69512277 | None:intergenic | 40.0% |
| ACTAACCAAGCAGAGAAAGA+CGG | + | chr1_1:69512476-69512495 | Msa0039640:CDS | 40.0% | |
| GATCGAACTGAGATATTAGG+AGG | - | chr1_1:69512503-69512522 | None:intergenic | 40.0% | |
| ! | TGCTCTTTTAGCAAGAGATG+TGG | + | chr1_1:69512598-69512617 | Msa0039640:CDS | 40.0% |
| GTACTAAAAGGACGGAAAGA+TGG | + | chr1_1:69513109-69513128 | Msa0039640:CDS | 40.0% | |
| TAAAAGGACGGAAAGATGGA+AGG | + | chr1_1:69513113-69513132 | Msa0039640:CDS | 40.0% | |
| AAAAGGACGGAAAGATGGAA+GGG | + | chr1_1:69513114-69513133 | Msa0039640:CDS | 40.0% | |
| !! | GAAAGATGGAAGGGTATCAA+AGG | + | chr1_1:69513123-69513142 | Msa0039640:CDS | 40.0% |
| ! | AATGAGTTGGCCTACATTCA+AGG | - | chr1_1:69513179-69513198 | None:intergenic | 40.0% |
| !! | TAGCAAAGCTCTGAATGAGT+TGG | - | chr1_1:69513192-69513211 | None:intergenic | 40.0% |
| ATTCAGAGCTTTGCTAAGAG+AGG | + | chr1_1:69513196-69513215 | Msa0039640:CDS | 40.0% | |
| TTCAGAGCTTTGCTAAGAGA+GGG | + | chr1_1:69513197-69513216 | Msa0039640:CDS | 40.0% | |
| AGGGTTGGGAGTTAAAGATA+TGG | + | chr1_1:69513216-69513235 | Msa0039640:CDS | 40.0% | |
| GATATGGTGACTTTATCTGG+AGG | + | chr1_1:69513232-69513251 | Msa0039640:CDS | 40.0% | |
| CTCACATTGTTCTTCCTTTG+AGG | + | chr1_1:69513270-69513289 | Msa0039640:CDS | 40.0% | |
| ATTATGTAGACGAGCCTCAA+AGG | - | chr1_1:69513287-69513306 | None:intergenic | 40.0% | |
| CAAATTCAGTGTTCAACCGT+GGG | - | chr1_1:69513333-69513352 | None:intergenic | 40.0% | |
| AAACAACTGCTAGCTGGAAA+AGG | + | chr1_1:69513451-69513470 | Msa0039640:CDS | 40.0% | |
| TGTAATCACCAACAAGTGAC+TGG | - | chr1_1:69513492-69513511 | None:intergenic | 40.0% | |
| GCAGCTTCAATGTTGAAACT+CGG | + | chr1_1:69513571-69513590 | Msa0039640:CDS | 40.0% | |
| AATCTAAGAGGCTCCGATAA+TGG | + | chr1_1:69513595-69513614 | Msa0039640:CDS | 40.0% | |
| GAGAAGTGAGACTTAATTGC+AGG | + | chr1_1:69513617-69513636 | Msa0039640:CDS | 40.0% | |
| CATTTGTGCACAATAGCATG+AGG | + | chr1_1:69513807-69513826 | Msa0039640:three_prime_UTR | 40.0% | |
| AGCCTTCTATTCCATGTTGA+CGG | + | chr1_1:69513924-69513943 | Msa0039640:three_prime_UTR | 40.0% | |
| ACAGTTCTCGAGCTATTACC+TGG | + | chr1_1:69512079-69512098 | Msa0039640:five_prime_UTR | 45.0% | |
| GAGGAGCCATTTGATAAACC+AGG | - | chr1_1:69512100-69512119 | None:intergenic | 45.0% | |
| !! | AAGGTGTTTTGTGCTAGCAG+AGG | - | chr1_1:69512119-69512138 | None:intergenic | 45.0% |
| GAAGAGGAGAAGGATTGGAA+AGG | - | chr1_1:69512138-69512157 | None:intergenic | 45.0% | |
| ATGGGCATGAAGTTCAGCTT+TGG | - | chr1_1:69512180-69512199 | None:intergenic | 45.0% | |
| !!! | AAATACGGGCTGGGACTTTT+GGG | - | chr1_1:69512274-69512293 | None:intergenic | 45.0% |
| !!! | AAAATACGGGCTGGGACTTT+TGG | - | chr1_1:69512275-69512294 | None:intergenic | 45.0% |
| ACATCCTCAAAATACGGGCT+GGG | - | chr1_1:69512283-69512302 | None:intergenic | 45.0% | |
| AACATCCTCAAAATACGGGC+TGG | - | chr1_1:69512284-69512303 | None:intergenic | 45.0% | |
| GTCTTTCTCTGCTTGGTTAG+TGG | - | chr1_1:69512477-69512496 | None:intergenic | 45.0% | |
| CAGCACAAGAAACAATGCCT+GGG | - | chr1_1:69512571-69512590 | None:intergenic | 45.0% | |
| TCAGCACAAGAAACAATGCC+TGG | - | chr1_1:69512572-69512591 | None:intergenic | 45.0% | |
| CCAGACTGTCAGAGCAAATA+GGG | - | chr1_1:69513073-69513092 | None:intergenic | 45.0% | |
| TCCAGACTGTCAGAGCAAAT+AGG | - | chr1_1:69513074-69513093 | None:intergenic | 45.0% | |
| TATTTGCTCTGACAGTCTGG+AGG | + | chr1_1:69513073-69513092 | Msa0039640:intron | 45.0% | |
| TTGGCCTACATTCAAGGTTG+GGG | - | chr1_1:69513173-69513192 | None:intergenic | 45.0% | |
| ! | GTTGGCCTACATTCAAGGTT+GGG | - | chr1_1:69513174-69513193 | None:intergenic | 45.0% |
| ! | AGTTGGCCTACATTCAAGGT+TGG | - | chr1_1:69513175-69513194 | None:intergenic | 45.0% |
| AGCTTTGCTAAGAGAGGGTT+GGG | + | chr1_1:69513202-69513221 | Msa0039640:CDS | 45.0% | |
| TTTATCTGGAGGACACACTC+TGG | + | chr1_1:69513243-69513262 | Msa0039640:CDS | 45.0% | |
| TTATCTGGAGGACACACTCT+GGG | + | chr1_1:69513244-69513263 | Msa0039640:CDS | 45.0% | |
| GCAAATTCAGTGTTCAACCG+TGG | - | chr1_1:69513334-69513353 | None:intergenic | 45.0% | |
| !!! | CCTGCGTTTTGGTTGTTGTT+TGG | - | chr1_1:69513385-69513404 | None:intergenic | 45.0% |
| CCAAACAACAACCAAAACGC+AGG | + | chr1_1:69513382-69513401 | Msa0039640:CDS | 45.0% | |
| ATCACCAACAAGTGACTGGT+CGG | - | chr1_1:69513488-69513507 | None:intergenic | 45.0% | |
| TATTCCATGTTGACGGCCTT+CGG | + | chr1_1:69513931-69513950 | Msa0039640:three_prime_UTR | 45.0% | |
| ATAGAATTGAAGTGGCCCGA+AGG | - | chr1_1:69513950-69513969 | None:intergenic | 45.0% | |
| ACAGTTCTCGAGCTATTACC+TGG | + | chr1_1:69512079-69512098 | Msa0039640:five_prime_UTR | 45.0% | |
| GAGGAGCCATTTGATAAACC+AGG | - | chr1_1:69512100-69512119 | None:intergenic | 45.0% | |
| !! | AAGGTGTTTTGTGCTAGCAG+AGG | - | chr1_1:69512119-69512138 | None:intergenic | 45.0% |
| GAAGAGGAGAAGGATTGGAA+AGG | - | chr1_1:69512138-69512157 | None:intergenic | 45.0% | |
| ATGGGCATGAAGTTCAGCTT+TGG | - | chr1_1:69512180-69512199 | None:intergenic | 45.0% | |
| !!! | AAATACGGGCTGGGACTTTT+GGG | - | chr1_1:69512274-69512293 | None:intergenic | 45.0% |
| !!! | AAAATACGGGCTGGGACTTT+TGG | - | chr1_1:69512275-69512294 | None:intergenic | 45.0% |
| ACATCCTCAAAATACGGGCT+GGG | - | chr1_1:69512283-69512302 | None:intergenic | 45.0% | |
| AACATCCTCAAAATACGGGC+TGG | - | chr1_1:69512284-69512303 | None:intergenic | 45.0% | |
| GTCTTTCTCTGCTTGGTTAG+TGG | - | chr1_1:69512477-69512496 | None:intergenic | 45.0% | |
| CAGCACAAGAAACAATGCCT+GGG | - | chr1_1:69512571-69512590 | None:intergenic | 45.0% | |
| TCAGCACAAGAAACAATGCC+TGG | - | chr1_1:69512572-69512591 | None:intergenic | 45.0% | |
| CCAGACTGTCAGAGCAAATA+GGG | - | chr1_1:69513073-69513092 | None:intergenic | 45.0% | |
| TCCAGACTGTCAGAGCAAAT+AGG | - | chr1_1:69513074-69513093 | None:intergenic | 45.0% | |
| TATTTGCTCTGACAGTCTGG+AGG | + | chr1_1:69513073-69513092 | Msa0039640:intron | 45.0% | |
| TTGGCCTACATTCAAGGTTG+GGG | - | chr1_1:69513173-69513192 | None:intergenic | 45.0% | |
| ! | GTTGGCCTACATTCAAGGTT+GGG | - | chr1_1:69513174-69513193 | None:intergenic | 45.0% |
| ! | AGTTGGCCTACATTCAAGGT+TGG | - | chr1_1:69513175-69513194 | None:intergenic | 45.0% |
| AGCTTTGCTAAGAGAGGGTT+GGG | + | chr1_1:69513202-69513221 | Msa0039640:CDS | 45.0% | |
| TTTATCTGGAGGACACACTC+TGG | + | chr1_1:69513243-69513262 | Msa0039640:CDS | 45.0% | |
| TTATCTGGAGGACACACTCT+GGG | + | chr1_1:69513244-69513263 | Msa0039640:CDS | 45.0% | |
| GCAAATTCAGTGTTCAACCG+TGG | - | chr1_1:69513334-69513353 | None:intergenic | 45.0% | |
| !!! | CCTGCGTTTTGGTTGTTGTT+TGG | - | chr1_1:69513385-69513404 | None:intergenic | 45.0% |
| CCAAACAACAACCAAAACGC+AGG | + | chr1_1:69513382-69513401 | Msa0039640:CDS | 45.0% | |
| ATCACCAACAAGTGACTGGT+CGG | - | chr1_1:69513488-69513507 | None:intergenic | 45.0% | |
| TATTCCATGTTGACGGCCTT+CGG | + | chr1_1:69513931-69513950 | Msa0039640:three_prime_UTR | 45.0% | |
| ATAGAATTGAAGTGGCCCGA+AGG | - | chr1_1:69513950-69513969 | None:intergenic | 45.0% | |
| ! | AAGTCCCAGCCCGTATTTTG+AGG | + | chr1_1:69512276-69512295 | Msa0039640:CDS | 50.0% |
| ATGCGATGCATCAGTGTTGC+TGG | + | chr1_1:69512442-69512461 | Msa0039640:CDS | 50.0% | |
| !! | AAGCTTGAATTGGCTTGCCC+AGG | + | chr1_1:69512551-69512570 | Msa0039640:CDS | 50.0% |
| AGCAAGAGATGTGGTTGCCA+TGG | + | chr1_1:69512607-69512626 | Msa0039640:CDS | 50.0% | |
| CCCTATTTGCTCTGACAGTC+TGG | + | chr1_1:69513070-69513089 | Msa0039640:intron | 50.0% | |
| GACAGTCTGGAGGTCCATAT+TGG | + | chr1_1:69513083-69513102 | Msa0039640:intron | 50.0% | |
| GAGCTTTGCTAAGAGAGGGT+TGG | + | chr1_1:69513201-69513220 | Msa0039640:CDS | 50.0% | |
| CTGTTCATGACACTGACCCA+CGG | + | chr1_1:69513314-69513333 | Msa0039640:CDS | 50.0% | |
| ACACTGATGCTGTTGAGTCC+AGG | - | chr1_1:69513414-69513433 | None:intergenic | 50.0% | |
| TCTTCCGACCAGTCACTTGT+TGG | + | chr1_1:69513481-69513500 | Msa0039640:CDS | 50.0% | |
| GGCCGTCAACATGGAATAGA+AGG | - | chr1_1:69513929-69513948 | None:intergenic | 50.0% | |
| ATTCCATGTTGACGGCCTTC+GGG | + | chr1_1:69513932-69513951 | Msa0039640:three_prime_UTR | 50.0% | |
| ! | AAGTCCCAGCCCGTATTTTG+AGG | + | chr1_1:69512276-69512295 | Msa0039640:CDS | 50.0% |
| ATGCGATGCATCAGTGTTGC+TGG | + | chr1_1:69512442-69512461 | Msa0039640:CDS | 50.0% | |
| !! | AAGCTTGAATTGGCTTGCCC+AGG | + | chr1_1:69512551-69512570 | Msa0039640:CDS | 50.0% |
| AGCAAGAGATGTGGTTGCCA+TGG | + | chr1_1:69512607-69512626 | Msa0039640:CDS | 50.0% | |
| CCCTATTTGCTCTGACAGTC+TGG | + | chr1_1:69513070-69513089 | Msa0039640:intron | 50.0% | |
| GACAGTCTGGAGGTCCATAT+TGG | + | chr1_1:69513083-69513102 | Msa0039640:intron | 50.0% | |
| GAGCTTTGCTAAGAGAGGGT+TGG | + | chr1_1:69513201-69513220 | Msa0039640:CDS | 50.0% | |
| CTGTTCATGACACTGACCCA+CGG | + | chr1_1:69513314-69513333 | Msa0039640:CDS | 50.0% | |
| ACACTGATGCTGTTGAGTCC+AGG | - | chr1_1:69513414-69513433 | None:intergenic | 50.0% | |
| TCTTCCGACCAGTCACTTGT+TGG | + | chr1_1:69513481-69513500 | Msa0039640:CDS | 50.0% | |
| GGCCGTCAACATGGAATAGA+AGG | - | chr1_1:69513929-69513948 | None:intergenic | 50.0% | |
| ATTCCATGTTGACGGCCTTC+GGG | + | chr1_1:69513932-69513951 | Msa0039640:three_prime_UTR | 50.0% | |
| ! | CAAGGTTGGGGCTGGTAAGT+TGG | - | chr1_1:69513161-69513180 | None:intergenic | 55.0% |
| CCTACATTCAAGGTTGGGGC+TGG | - | chr1_1:69513169-69513188 | None:intergenic | 55.0% | |
| CCAGCCCCAACCTTGAATGT+AGG | + | chr1_1:69513166-69513185 | Msa0039640:CDS | 55.0% | |
| ! | CCAGGAACTGTCCTGCGTTT+TGG | - | chr1_1:69513396-69513415 | None:intergenic | 55.0% |
| CCAAAACGCAGGACAGTTCC+TGG | + | chr1_1:69513393-69513412 | Msa0039640:CDS | 55.0% | |
| ! | CAAGGTTGGGGCTGGTAAGT+TGG | - | chr1_1:69513161-69513180 | None:intergenic | 55.0% |
| CCTACATTCAAGGTTGGGGC+TGG | - | chr1_1:69513169-69513188 | None:intergenic | 55.0% | |
| CCAGCCCCAACCTTGAATGT+AGG | + | chr1_1:69513166-69513185 | Msa0039640:CDS | 55.0% | |
| ! | CCAGGAACTGTCCTGCGTTT+TGG | - | chr1_1:69513396-69513415 | None:intergenic | 55.0% |
| CCAAAACGCAGGACAGTTCC+TGG | + | chr1_1:69513393-69513412 | Msa0039640:CDS | 55.0% | |
| !! | GGGCTGGGACTTTTGGGTCA+TGG | - | chr1_1:69512268-69512287 | None:intergenic | 60.0% |
| GAGGGCCGTCTTTCTCTGCT+TGG | - | chr1_1:69512484-69512503 | None:intergenic | 60.0% | |
| ! | GGTTGGGGCTGGTAAGTTGG+CGG | - | chr1_1:69513158-69513177 | None:intergenic | 60.0% |
| !! | GGGCTGGGACTTTTGGGTCA+TGG | - | chr1_1:69512268-69512287 | None:intergenic | 60.0% |
| GAGGGCCGTCTTTCTCTGCT+TGG | - | chr1_1:69512484-69512503 | None:intergenic | 60.0% | |
| ! | GGTTGGGGCTGGTAAGTTGG+CGG | - | chr1_1:69513158-69513177 | None:intergenic | 60.0% |
| TGGCCCGAAGGCCGTCAACA+TGG | - | chr1_1:69513938-69513957 | None:intergenic | 65.0% | |
| TGGCCCGAAGGCCGTCAACA+TGG | - | chr1_1:69513938-69513957 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 69512062 | 69514014 | 69512062 | ID=Msa0039640;Name=Msa0039640 |
| chr1_1 | mRNA | 69512062 | 69514014 | 69512062 | ID=Msa0039640-mRNA-1;Parent=Msa0039640;Name=Msa0039640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=48|1|1|1|1|1|3|363|322 |
| chr1_1 | exon | 69512062 | 69512325 | 69512062 | ID=Msa0039640-mRNA-1:exon:22737;Parent=Msa0039640-mRNA-1 |
| chr1_1 | exon | 69512440 | 69512628 | 69512440 | ID=Msa0039640-mRNA-1:exon:22738;Parent=Msa0039640-mRNA-1 |
| chr1_1 | exon | 69513088 | 69514014 | 69513088 | ID=Msa0039640-mRNA-1:exon:22739;Parent=Msa0039640-mRNA-1 |
| chr1_1 | five_prime_UTR | 69512062 | 69512109 | 69512062 | ID=Msa0039640-mRNA-1:five_prime_utr;Parent=Msa0039640-mRNA-1 |
| chr1_1 | CDS | 69512110 | 69512325 | 69512110 | ID=Msa0039640-mRNA-1:cds;Parent=Msa0039640-mRNA-1 |
| chr1_1 | CDS | 69512440 | 69512628 | 69512440 | ID=Msa0039640-mRNA-1:cds;Parent=Msa0039640-mRNA-1 |
| chr1_1 | CDS | 69513088 | 69513651 | 69513088 | ID=Msa0039640-mRNA-1:cds;Parent=Msa0039640-mRNA-1 |
| chr1_1 | three_prime_UTR | 69513652 | 69514014 | 69513652 | ID=Msa0039640-mRNA-1:three_prime_utr;Parent=Msa0039640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
