Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139180 | A0A396J752 | 55.487 | 483 | 194 | 9 | 101 | 583 | 1 | 462 | 2.22e-160 | 477 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139180 | Msa0397750 | 0.857037 | 2.143943e-62 | -8.615850e-47 |
| Msa0139180 | Msa0735660 | 0.816906 | 4.343751e-52 | -8.615850e-47 |
| Msa0139180 | Msa0753720 | 0.800079 | 1.705502e-48 | -8.615850e-47 |
| Msa0139180 | Msa1044890 | 0.810717 | 1.003298e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139180 | MtrunA17_Chr2g0305311 | 55.487 | 483 | 194 | 9 | 101 | 583 | 1 | 462 | 4.27e-164 | 477 |
| Msa0139180 | MtrunA17_Chr6g0467141 | 89.344 | 122 | 13 | 0 | 460 | 581 | 1 | 122 | 1.07e-68 | 219 |
| Msa0139180 | MtrunA17_Chr2g0309021 | 28.152 | 341 | 210 | 8 | 256 | 568 | 163 | 496 | 2.29e-37 | 145 |
| Msa0139180 | MtrunA17_Chr4g0011741 | 23.514 | 387 | 254 | 13 | 222 | 579 | 507 | 880 | 2.07e-14 | 76.6 |
| Msa0139180 | MtrunA17_Chr3g0086061 | 76.190 | 42 | 8 | 1 | 540 | 581 | 1 | 40 | 5.38e-12 | 61.2 |
| Msa0139180 | MtrunA17_Chr6g0472201 | 24.916 | 297 | 201 | 12 | 293 | 575 | 75 | 363 | 2.96e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0139180 | AT1G40087.1 | 26.496 | 351 | 241 | 7 | 224 | 564 | 2 | 345 | 7.67e-33 | 130 |
| Msa0139180 | AT3G30200.1 | 26.909 | 275 | 188 | 4 | 298 | 564 | 196 | 465 | 4.33e-24 | 106 |
Find 123 sgRNAs with CRISPR-Local
Find 434 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTATTAGCAAATTATT+TGG | 0.134917 | 1_3:+72584765 | Msa0139180:CDS |
| CCTCTTTGTCTCTAGAATTT+TGG | 0.205491 | 1_3:-72586089 | None:intergenic |
| GTCAAGCATTTGCATTAATA+AGG | 0.213637 | 1_3:-72586067 | None:intergenic |
| TGAACGGAGGCGCTTCTTAT+TGG | 0.241740 | 1_3:-72584220 | None:intergenic |
| GCAAGTTCTTGAGAGATAAT+TGG | 0.249235 | 1_3:-72583451 | None:intergenic |
| TGCTGGATATGTCCGTTCTA+TGG | 0.260226 | 1_3:+72585891 | Msa0139180:CDS |
| ATTTAAAGATTTCCCGATAA+TGG | 0.263080 | 1_3:+72584804 | Msa0139180:CDS |
| AGTTAATTCATAGAATTCTT+TGG | 0.292316 | 1_3:-72579852 | None:intergenic |
| TCCACTCAGGCAGTTGATTT+AGG | 0.306922 | 1_3:-72586186 | None:intergenic |
| CATTCATAAAACTTCGCTTT+AGG | 0.312809 | 1_3:-72586209 | None:intergenic |
| AGCAAATTATTTGGGCCAAT+TGG | 0.338084 | 1_3:+72584774 | Msa0139180:CDS |
| GAAGCATTTGCCAATGTGTT+TGG | 0.345306 | 1_3:+72585859 | Msa0139180:CDS |
| GTCATTATCCTAGTTCCATT+TGG | 0.351424 | 1_3:-72584703 | None:intergenic |
| CTTTAAATTGCCTTGCCAAT+TGG | 0.357012 | 1_3:-72584789 | None:intergenic |
| AAATTATTAGCAAATTATTT+GGG | 0.372951 | 1_3:+72584766 | Msa0139180:CDS |
| TCCCATCTTTCAACCATTAT+CGG | 0.380780 | 1_3:-72584817 | None:intergenic |
| TCGAACTTTGCTTGCTCGTA+TGG | 0.386412 | 1_3:-72583385 | None:intergenic |
| GTAATGTTTGTGCAATAGTT+TGG | 0.394963 | 1_3:-72586121 | None:intergenic |
| TGTTTAAGAAACATTACAAA+TGG | 0.399446 | 1_3:+72585073 | Msa0139180:CDS |
| GCTGGATATGTCCGTTCTAT+GGG | 0.400623 | 1_3:+72585892 | Msa0139180:CDS |
| AGCCGAGATTGATTCTCTTA+AGG | 0.409612 | 1_3:+72586005 | Msa0139180:CDS |
| TACTTGTAGGAATTGAGATA+TGG | 0.409851 | 1_3:+72585483 | Msa0139180:intron |
| CATCCTTCCATTTCTTTCCA+AGG | 0.410334 | 1_3:-72585038 | None:intergenic |
| ACATCAACCTCCCAGTATCT+TGG | 0.412857 | 1_3:-72584516 | None:intergenic |
| TCTCTAGCCTTGGAAAGAAA+TGG | 0.416906 | 1_3:+72585031 | Msa0139180:CDS |
| AAGTTTGTTGTTGATGATGA+TGG | 0.421434 | 1_3:+72584988 | Msa0139180:CDS |
| TTCCTTTCTTCGCTTACACT+TGG | 0.431022 | 1_3:-72579824 | None:intergenic |
| ATTGTGCATGCATTTATGTT+CGG | 0.434564 | 1_3:+72586319 | Msa0139180:three_prime_UTR |
| CCCGATAATGGTTGAAAGAT+GGG | 0.441650 | 1_3:+72584816 | Msa0139180:CDS |
| ACGATGCGTTTGGAGTTGAT+AGG | 0.445846 | 1_3:+72579738 | Msa0139180:CDS |
| TCCCGATAATGGTTGAAAGA+TGG | 0.446335 | 1_3:+72584815 | Msa0139180:CDS |
| TTTGCTTCATAGAACGAACT+TGG | 0.455155 | 1_3:-72580034 | None:intergenic |
| GCAGATTGCCCCACCGGTTG+AGG | 0.457756 | 1_3:-72584742 | None:intergenic |
| AATCTCTACATTTGATGCAA+TGG | 0.458071 | 1_3:-72579780 | None:intergenic |
| AAATATGTTATCTCTAGCCT+TGG | 0.458446 | 1_3:+72585021 | Msa0139180:CDS |
| GGTGTCTCATGTGTGGGTGG+TGG | 0.459191 | 1_3:-72584312 | None:intergenic |
| ATCTCTACATTTGATGCAAT+GGG | 0.460721 | 1_3:-72579779 | None:intergenic |
| CCCATCTTTCAACCATTATC+GGG | 0.460909 | 1_3:-72584816 | None:intergenic |
| ATGGAATGATGTTCCTCAAC+CGG | 0.463679 | 1_3:+72584729 | Msa0139180:CDS |
| TATGTCCGTTCTATGGGGCT+TGG | 0.464477 | 1_3:+72585898 | Msa0139180:CDS |
| ATTGGCTGCCTCAAGAGCTC+CGG | 0.469208 | 1_3:-72584160 | None:intergenic |
| TCTTGTACACCCTTCATACA+AGG | 0.470520 | 1_3:-72579891 | None:intergenic |
| GTTTAAGAAACATTACAAAT+GGG | 0.473095 | 1_3:+72585074 | Msa0139180:CDS |
| TTGTGCATGCATTTATGTTC+GGG | 0.473613 | 1_3:+72586320 | Msa0139180:three_prime_UTR |
| TTCAGAAGTTGATGTCTTGA+AGG | 0.473713 | 1_3:+72586035 | Msa0139180:CDS |
| CAAATGGGAACTCACATTAG+AGG | 0.477412 | 1_3:+72585089 | Msa0139180:CDS |
| GCAAGCAAAGTTCGAAAGAA+TGG | 0.481894 | 1_3:+72583393 | Msa0139180:CDS |
| AACATGATCAACGATGCGTT+TGG | 0.485141 | 1_3:+72579728 | None:intergenic |
| TTCTTTCTTTAGGTTGCGAA+TGG | 0.485954 | 1_3:+72584117 | Msa0139180:intron |
| ATGCCGAGGAATATAAAATC+AGG | 0.488070 | 1_3:-72586232 | None:intergenic |
| ATGTGGCGGGTCATACTTCA+AGG | 0.488660 | 1_3:+72584644 | Msa0139180:CDS |
| GAGTCAGTTCCTAGTGTATG+AGG | 0.494286 | 1_3:-72585318 | None:intergenic |
| TTCTATGAATTAACTAGAGA+TGG | 0.494771 | 1_3:+72579860 | Msa0139180:CDS |
| GATAGTCCGTACCTTGGCTC+TGG | 0.496615 | 1_3:+72584387 | Msa0139180:CDS |
| AAGAATCTCCAAATGGAACT+AGG | 0.497813 | 1_3:+72584695 | Msa0139180:CDS |
| AATTTAGCAGATTGCCCCAC+CGG | 0.499755 | 1_3:-72584748 | None:intergenic |
| CGATGCGTTTGGAGTTGATA+GGG | 0.504132 | 1_3:+72579739 | Msa0139180:CDS |
| TGATCTGGGTGAATAAAACT+TGG | 0.513574 | 1_3:-72585132 | None:intergenic |
| GATTGATTCTCTTAAGGAGA+AGG | 0.517958 | 1_3:+72586011 | Msa0139180:CDS |
| TTGGCTGCCTCAAGAGCTCC+GGG | 0.520703 | 1_3:-72584159 | None:intergenic |
| CGCTTCTTATTGGCTGCATG+TGG | 0.521801 | 1_3:-72584210 | None:intergenic |
| GCAGTTGATTTAGGTCCACT+TGG | 0.522475 | 1_3:-72586177 | None:intergenic |
| GGAGAACAACCCTTGTATGA+AGG | 0.531000 | 1_3:+72579881 | Msa0139180:CDS |
| GTGCTTGAAGAATCTCCAAA+TGG | 0.542925 | 1_3:+72584688 | Msa0139180:CDS |
| CTGTTATTTGTTAGATGTGG+CGG | 0.545341 | 1_3:+72584630 | Msa0139180:intron |
| TTCCAAGTGTAAGCGAAGAA+AGG | 0.545769 | 1_3:+72579822 | Msa0139180:CDS |
| ATTTGCCAATGTGTTTGGAA+AGG | 0.548585 | 1_3:+72585864 | Msa0139180:CDS |
| ATTATTTGGGCCAATTGGCA+AGG | 0.549492 | 1_3:+72584779 | Msa0139180:CDS |
| TGTACAACCCGGAGCTCTTG+AGG | 0.549980 | 1_3:+72584152 | Msa0139180:CDS |
| GATATGGTCGAGAATATAGC+AGG | 0.553453 | 1_3:+72585499 | Msa0139180:CDS |
| CTCCTTAAGAGAATCAATCT+CGG | 0.554776 | 1_3:-72586007 | None:intergenic |
| CCAAAATTCTAGAGACAAAG+AGG | 0.558355 | 1_3:+72586089 | Msa0139180:CDS |
| TGCGATCAGAAAAGATGAGT+TGG | 0.567830 | 1_3:+72585344 | Msa0139180:CDS |
| GAGAACAACCCTTGTATGAA+GGG | 0.572568 | 1_3:+72579882 | Msa0139180:CDS |
| CGATGGAGGTGTCTCATGTG+TGG | 0.575152 | 1_3:-72584319 | None:intergenic |
| GATGGAGGTGTCTCATGTGT+GGG | 0.575465 | 1_3:-72584318 | None:intergenic |
| AATTTGTCAATGAATATGCA+AGG | 0.581916 | 1_3:+72585562 | Msa0139180:CDS |
| CAGTTGATTTAGGTCCACTT+GGG | 0.583159 | 1_3:-72586176 | None:intergenic |
| AAGAAGCGCCTCCGTTCACA+AGG | 0.583256 | 1_3:+72584225 | Msa0139180:CDS |
| ACCTAAATCAACTGCCTGAG+TGG | 0.584189 | 1_3:+72586185 | Msa0139180:three_prime_UTR |
| TAGGAGGAAGGCTGAACAAG+TGG | 0.584537 | 1_3:+72585176 | Msa0139180:CDS |
| GAATGATGTTCCTCAACCGG+TGG | 0.591938 | 1_3:+72584732 | Msa0139180:CDS |
| TGTTATTTGTTAGATGTGGC+GGG | 0.593754 | 1_3:+72584631 | Msa0139180:intron |
| TCATCTCCAGAGCCAAGGTA+CGG | 0.595150 | 1_3:-72584393 | None:intergenic |
| TGTTTCGCTTAAAGATGCCA+AGG | 0.601857 | 1_3:+72585536 | Msa0139180:CDS |
| AATGATGTTCCTCAACCGGT+GGG | 0.604945 | 1_3:+72584733 | Msa0139180:CDS |
| GTGTTTGGAAAGGAACATGC+TGG | 0.608959 | 1_3:+72585874 | Msa0139180:CDS |
| GAACTAGGATAATGACTCGA+TGG | 0.610980 | 1_3:+72584710 | Msa0139180:CDS |
| GGTGAAGGTGTAACATGTGT+AGG | 0.611626 | 1_3:-72584342 | None:intergenic |
| GTTTCGCTTAAAGATGCCAA+GGG | 0.612487 | 1_3:+72585537 | Msa0139180:CDS |
| CTTGGAAAGAAATGGAAGGA+TGG | 0.617605 | 1_3:+72585039 | Msa0139180:CDS |
| ACTTCGCTTTAGGTCCACTC+AGG | 0.619511 | 1_3:-72586199 | None:intergenic |
| ATATGGTCGAGAATATAGCA+GGG | 0.620430 | 1_3:+72585500 | Msa0139180:CDS |
| TAGCCTTGGAAAGAAATGGA+AGG | 0.623697 | 1_3:+72585035 | Msa0139180:CDS |
| CTTGTACACCCTTCATACAA+GGG | 0.624029 | 1_3:-72579890 | None:intergenic |
| ATTTGTCAATGAATATGCAA+GGG | 0.624585 | 1_3:+72585563 | Msa0139180:CDS |
| AAGAAAACAATTACAAAACT+CGG | 0.624839 | 1_3:+72580055 | Msa0139180:CDS |
| TTATGCCAAGCCCCATAGAA+CGG | 0.625942 | 1_3:-72585903 | None:intergenic |
| TATATATAATCGATCCCAAG+TGG | 0.631420 | 1_3:+72586162 | Msa0139180:three_prime_UTR |
| ATGTTCCTTTCCAAACACAT+TGG | 0.633980 | 1_3:-72585869 | None:intergenic |
| GGAGGTGTCTCATGTGTGGG+TGG | 0.634185 | 1_3:-72584315 | None:intergenic |
| GGTGTAACATGTGTAGGCGA+TGG | 0.637531 | 1_3:-72584336 | None:intergenic |
| GAGCGACTAGAGATTCGAGA+TGG | 0.640237 | 1_3:-72585928 | None:intergenic |
| CATCATCATCTCCAGAGCCA+AGG | 0.642384 | 1_3:-72584398 | None:intergenic |
| TGATAGGGATCAGACAAATG+AGG | 0.644394 | 1_3:+72579754 | Msa0139180:CDS |
| AAATCAAAGTTTGTACAACC+CGG | 0.645592 | 1_3:+72584141 | Msa0139180:CDS |
| ATTAGCCTCGATGGAAGACG+AGG | 0.645771 | 1_3:-72585962 | None:intergenic |
| AGGTACGGACTATCATGTGT+AGG | 0.646597 | 1_3:-72584378 | None:intergenic |
| GTAACATGTGTAGGCGATGG+AGG | 0.647899 | 1_3:-72584333 | None:intergenic |
| ACACATGATAGTCCGTACCT+TGG | 0.649019 | 1_3:+72584381 | Msa0139180:CDS |
| TGTGTAGGTGTCACATGTGT+AGG | 0.650146 | 1_3:-72584363 | None:intergenic |
| CTGGATATGTCCGTTCTATG+GGG | 0.651362 | 1_3:+72585893 | Msa0139180:CDS |
| TATGGTCGAGAATATAGCAG+GGG | 0.665151 | 1_3:+72585501 | Msa0139180:CDS |
| GGTGTCACATGTGTAGGTGA+AGG | 0.671622 | 1_3:-72584357 | None:intergenic |
| AAGCTGAACTATGTATGCCG+AGG | 0.679499 | 1_3:-72586246 | None:intergenic |
| GTGGTAAACCTTGTGAACGG+AGG | 0.698715 | 1_3:-72584191 | None:intergenic |
| GTGGTAAACCTTGTGAACGG+AGG | 0.698715 | 1_3:-72584233 | None:intergenic |
| ATTAGCCTCGTCTTCCATCG+AGG | 0.707505 | 1_3:+72585957 | Msa0139180:CDS |
| AAAGAAACCAAGATACTGGG+AGG | 0.708954 | 1_3:+72584509 | Msa0139180:CDS |
| ATGATGTTCCTCAACCGGTG+GGG | 0.710243 | 1_3:+72584734 | Msa0139180:CDS |
| CATGTGGTAAACCTTGTGAA+CGG | 0.710378 | 1_3:-72584194 | None:intergenic |
| CATGTGGTAAACCTTGTGAA+CGG | 0.710378 | 1_3:-72584236 | None:intergenic |
| TTCAAGGAGACGTTTAACAG+TGG | 0.713812 | 1_3:+72584660 | Msa0139180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGAAAATAATATTATTG+TGG | + | chr1_3:72581826-72581845 | Msa0139180:intron | 10.0% |
| !! | TAAATTATTAGCAAATTATT+TGG | + | chr1_3:72584765-72584784 | Msa0139180:CDS | 10.0% |
| !! | AAATTATTAGCAAATTATTT+GGG | + | chr1_3:72584766-72584785 | Msa0139180:CDS | 10.0% |
| !! | GTCTTAAAAATAGTAATAAA+TGG | + | chr1_3:72580809-72580828 | Msa0139180:intron | 15.0% |
| !! | TAATATGAAATAACCAAATA+GGG | + | chr1_3:72582235-72582254 | Msa0139180:intron | 15.0% |
| !! | AGTATATTTAAGAAAGATTA+TGG | + | chr1_3:72583741-72583760 | Msa0139180:intron | 15.0% |
| !! | GATAAAAACTAAATTGAAAA+CGG | - | chr1_3:72583879-72583898 | None:intergenic | 15.0% |
| !!! | TTTCAATTTAGTTTTTATCT+AGG | + | chr1_3:72583880-72583899 | Msa0139180:intron | 15.0% |
| !!! | TAGAGATAACATATTTTTTA+TGG | - | chr1_3:72585017-72585036 | None:intergenic | 15.0% |
| !!! | AATGTCAAACATTTAATTTT+AGG | - | chr1_3:72585656-72585675 | None:intergenic | 15.0% |
| !! | AGTTAATTCATAGAATTCTT+TGG | - | chr1_3:72579855-72579874 | None:intergenic | 20.0% |
| !!! | AATGATTTTAGAGCTATTAA+AGG | + | chr1_3:72579988-72580007 | Msa0139180:intron | 20.0% |
| !! | AAGAAAACAATTACAAAACT+CGG | + | chr1_3:72580055-72580074 | Msa0139180:CDS | 20.0% |
| !! | AAATTTGTAACACTTCAAAA+TGG | + | chr1_3:72580158-72580177 | Msa0139180:intron | 20.0% |
| !!! | ATATGATTCTTTTAAGAAAG+AGG | + | chr1_3:72580660-72580679 | Msa0139180:intron | 20.0% |
| !! | CAAACTACTAAATTATTGAA+GGG | - | chr1_3:72581800-72581819 | None:intergenic | 20.0% |
| !! | ACAAACTACTAAATTATTGA+AGG | - | chr1_3:72581801-72581820 | None:intergenic | 20.0% |
| !! | ATTATTGTGGTTCAATTTAT+AGG | + | chr1_3:72581839-72581858 | Msa0139180:intron | 20.0% |
| !! | TCAATTTGTACATCATTAAT+AGG | - | chr1_3:72582021-72582040 | None:intergenic | 20.0% |
| !! | CTAATATGAAATAACCAAAT+AGG | + | chr1_3:72582234-72582253 | Msa0139180:intron | 20.0% |
| !! | TTATTAAAAACACAAAACTG+TGG | + | chr1_3:72582598-72582617 | Msa0139180:intron | 20.0% |
| !!! | TATCTATTTTAATGCTTCTT+GGG | - | chr1_3:72582786-72582805 | None:intergenic | 20.0% |
| !!! | TTATCTATTTTAATGCTTCT+TGG | - | chr1_3:72582787-72582806 | None:intergenic | 20.0% |
| !! | AAGCATTAAAATAGATAAGT+TGG | + | chr1_3:72582789-72582808 | Msa0139180:intron | 20.0% |
| !! | AGCATTAAAATAGATAAGTT+GGG | + | chr1_3:72582790-72582809 | Msa0139180:intron | 20.0% |
| !!! | TTTGTTCTAAATTTTGTGAT+GGG | - | chr1_3:72583020-72583039 | None:intergenic | 20.0% |
| !!! | ATTTGTTCTAAATTTTGTGA+TGG | - | chr1_3:72583021-72583040 | None:intergenic | 20.0% |
| !! | ATAACATAAATTTACCACTA+AGG | + | chr1_3:72583837-72583856 | Msa0139180:intron | 20.0% |
| !!! | AATTTATGTTTTAACAGACA+AGG | + | chr1_3:72583972-72583991 | Msa0139180:intron | 20.0% |
| !! | GAGCTTTCATATATAAATAT+TGG | + | chr1_3:72584092-72584111 | Msa0139180:intron | 20.0% |
| !! | AATATTGGAATTCTTTCTTT+AGG | + | chr1_3:72584107-72584126 | Msa0139180:intron | 20.0% |
| !!! | CTGTTATTGATTGTTTTAAA+TGG | + | chr1_3:72584597-72584616 | Msa0139180:intron | 20.0% |
| !!! | GTTTTATGATAACAAAGTAA+AGG | + | chr1_3:72584870-72584889 | Msa0139180:CDS | 20.0% |
| !! | TGTTTAAGAAACATTACAAA+TGG | + | chr1_3:72585073-72585092 | Msa0139180:CDS | 20.0% |
| !! | GTTTAAGAAACATTACAAAT+GGG | + | chr1_3:72585074-72585093 | Msa0139180:CDS | 20.0% |
| !! | ATTATTGTTTCAATTAATGC+AGG | + | chr1_3:72585251-72585270 | Msa0139180:intron | 20.0% |
| ! | TTCTATGAATTAACTAGAGA+TGG | + | chr1_3:72579860-72579879 | Msa0139180:CDS | 25.0% |
| !!! | TGAAGTGTTACAAATTTTAC+AGG | - | chr1_3:72580155-72580174 | None:intergenic | 25.0% |
| ! | TTTGAACTCATTATACCAAA+TGG | - | chr1_3:72580457-72580476 | None:intergenic | 25.0% |
| ! | TGAGTTCAAATTATAGCATT+TGG | + | chr1_3:72580467-72580486 | Msa0139180:intron | 25.0% |
| !!! | TTACTATTTTTAAGACGACA+AGG | - | chr1_3:72580805-72580824 | None:intergenic | 25.0% |
| !! | TAGTAATAAATGGTGTTTTG+TGG | + | chr1_3:72580819-72580838 | Msa0139180:intron | 25.0% |
| !! | AGTAATAAATGGTGTTTTGT+GGG | + | chr1_3:72580820-72580839 | Msa0139180:intron | 25.0% |
| !!! | CAAAACATAAAGGTCATTTT+TGG | + | chr1_3:72580964-72580983 | Msa0139180:intron | 25.0% |
| ! | TATTCTTTGAACTTCCATAT+TGG | + | chr1_3:72581127-72581146 | Msa0139180:intron | 25.0% |
| ! | TGAAAATGGAAAAATTTCTC+CGG | + | chr1_3:72581314-72581333 | Msa0139180:intron | 25.0% |
| ! | TCATTCTTTAGACAATTATG+TGG | + | chr1_3:72581570-72581589 | Msa0139180:intron | 25.0% |
| !! | AGTATTGAATGTTGAAGATT+TGG | + | chr1_3:72581596-72581615 | Msa0139180:intron | 25.0% |
| ! | ATACATGAGATTCTTACATA+CGG | + | chr1_3:72581934-72581953 | Msa0139180:intron | 25.0% |
| ! | AACCTTCTTACTTTATCAAA+AGG | - | chr1_3:72582526-72582545 | None:intergenic | 25.0% |
| ! | TCTATTAATCTTCCATAGTA+AGG | - | chr1_3:72582694-72582713 | None:intergenic | 25.0% |
| ! | TTTACAAGATTAACACATAC+CGG | + | chr1_3:72582829-72582848 | Msa0139180:intron | 25.0% |
| ! | TATAACAATCACAAGTACAT+CGG | - | chr1_3:72583171-72583190 | None:intergenic | 25.0% |
| ! | AGAACTTAAAAAAAAGATGG+TGG | + | chr1_3:72583417-72583436 | Msa0139180:CDS | 25.0% |
| ! | TTCAAAACGTTCATCAAAAA+AGG | + | chr1_3:72583492-72583511 | Msa0139180:CDS | 25.0% |
| ! | AATTTATGTTATGTACACAG+TGG | - | chr1_3:72583829-72583848 | None:intergenic | 25.0% |
| ! | ATAAAAAGAAACCAAGATAC+TGG | + | chr1_3:72584505-72584524 | Msa0139180:CDS | 25.0% |
| ! | TAAAAAGAAACCAAGATACT+GGG | + | chr1_3:72584506-72584525 | Msa0139180:CDS | 25.0% |
| ! | ATTTAAAGATTTCCCGATAA+TGG | + | chr1_3:72584804-72584823 | Msa0139180:CDS | 25.0% |
| !!! | TTGTTTTTGTCAATTTTAGG+AGG | + | chr1_3:72585160-72585179 | Msa0139180:CDS | 25.0% |
| ! | TATCATATATGCTTACTTGT+AGG | + | chr1_3:72585470-72585489 | Msa0139180:intron | 25.0% |
| ! | AATTTGTCAATGAATATGCA+AGG | + | chr1_3:72585562-72585581 | Msa0139180:CDS | 25.0% |
| ! | ATTTGTCAATGAATATGCAA+GGG | + | chr1_3:72585563-72585582 | Msa0139180:CDS | 25.0% |
| !! | TTTTTGCACAATTGAAAAAG+AGG | + | chr1_3:72585610-72585629 | Msa0139180:intron | 25.0% |
| ATCTCTACATTTGATGCAAT+GGG | - | chr1_3:72579782-72579801 | None:intergenic | 30.0% | |
| AATCTCTACATTTGATGCAA+TGG | - | chr1_3:72579783-72579802 | None:intergenic | 30.0% | |
| CAATAAAGCATACAATCGTT+GGG | - | chr1_3:72580109-72580128 | None:intergenic | 30.0% | |
| ! | CAACGATTGTATGCTTTATT+GGG | + | chr1_3:72580108-72580127 | Msa0139180:intron | 30.0% |
| ! | AACGATTGTATGCTTTATTG+GGG | + | chr1_3:72580109-72580128 | Msa0139180:intron | 30.0% |
| AACACTTCAAAATGGAAATC+AGG | + | chr1_3:72580166-72580185 | Msa0139180:intron | 30.0% | |
| ACACTTCAAAATGGAAATCA+GGG | + | chr1_3:72580167-72580186 | Msa0139180:intron | 30.0% | |
| AGGATTGTGTTGTCAATAAT+AGG | + | chr1_3:72580194-72580213 | Msa0139180:intron | 30.0% | |
| ! | AAATAACGAAGAACTTTTGC+AGG | - | chr1_3:72580229-72580248 | None:intergenic | 30.0% |
| !! | CTTTTCAATCGAGGTTTTAA+TGG | - | chr1_3:72580253-72580272 | None:intergenic | 30.0% |
| ATAATGTCGATGATAATTCC+TGG | + | chr1_3:72580550-72580569 | Msa0139180:intron | 30.0% | |
| ACACAGATTTAGATTGAACA+AGG | + | chr1_3:72580867-72580886 | Msa0139180:intron | 30.0% | |
| TCAACAGGTTCAAAACATAA+AGG | + | chr1_3:72580954-72580973 | Msa0139180:intron | 30.0% | |
| ! | TTTTCTTCTTCCAAATTGGA+GGG | - | chr1_3:72581104-72581123 | None:intergenic | 30.0% |
| ! | ATGCTTTTCTTCTTCCAAAT+TGG | - | chr1_3:72581108-72581127 | None:intergenic | 30.0% |
| ! | ACATTTTTCTCGATATGCAT+CGG | - | chr1_3:72581183-72581202 | None:intergenic | 30.0% |
| GAGGAAATATCATTTACATG+TGG | - | chr1_3:72581656-72581675 | None:intergenic | 30.0% | |
| ! | CAAGTTTAACTTCTTCAACA+AGG | - | chr1_3:72581716-72581735 | None:intergenic | 30.0% |
| CTTGTTGAAGAAGTTAAACT+TGG | + | chr1_3:72581714-72581733 | Msa0139180:intron | 30.0% | |
| TGTCGAAAGGTAAATTATGT+CGG | + | chr1_3:72581767-72581786 | Msa0139180:intron | 30.0% | |
| GGTTCAATTTATAGGTACTT+AGG | + | chr1_3:72581847-72581866 | Msa0139180:intron | 30.0% | |
| TAGGAAACATTGAGACTAAA+TGG | + | chr1_3:72581968-72581987 | Msa0139180:intron | 30.0% | |
| ! | TCCAACTCTAGGAAATAATT+CGG | - | chr1_3:72582055-72582074 | None:intergenic | 30.0% |
| ! | TGAGCTTGTAACTTTTCAAT+CGG | - | chr1_3:72582114-72582133 | None:intergenic | 30.0% |
| TAGTGTTCATAAACCCATTT+AGG | + | chr1_3:72582364-72582383 | Msa0139180:intron | 30.0% | |
| ! | GTGACTAACTGTATGTTTTA+TGG | + | chr1_3:72582427-72582446 | Msa0139180:intron | 30.0% |
| CTAATGAGAACATCTTTATC+TGG | - | chr1_3:72582490-72582509 | None:intergenic | 30.0% | |
| ! | GTCCTTTTGATAAAGTAAGA+AGG | + | chr1_3:72582521-72582540 | Msa0139180:intron | 30.0% |
| TGGATTCAAATTTCGAACAA+AGG | + | chr1_3:72582564-72582583 | Msa0139180:intron | 30.0% | |
| TAATAGACATCATTGAGCTT+CGG | + | chr1_3:72582707-72582726 | Msa0139180:intron | 30.0% | |
| TGCCAATGTTTAAATGTGAA+TGG | + | chr1_3:72582746-72582765 | Msa0139180:intron | 30.0% | |
| GCCAATGTTTAAATGTGAAT+GGG | + | chr1_3:72582747-72582766 | Msa0139180:intron | 30.0% | |
| AGCTCAAATGGTTTATTATG+TGG | + | chr1_3:72582891-72582910 | Msa0139180:intron | 30.0% | |
| TTATTATGTGGATGATGAGA+AGG | + | chr1_3:72582903-72582922 | Msa0139180:intron | 30.0% | |
| !!! | TCTAAATTTTGTGATGGGTA+TGG | - | chr1_3:72583015-72583034 | None:intergenic | 30.0% |
| TCTTGCTAATTGTATATGTG+TGG | - | chr1_3:72583058-72583077 | None:intergenic | 30.0% | |
| ATAACAATCACAAGTACATC+GGG | - | chr1_3:72583170-72583189 | None:intergenic | 30.0% | |
| AAAGAAAAACTAGCAACAAG+AGG | - | chr1_3:72583293-72583312 | None:intergenic | 30.0% | |
| GGCAGAACTTAAAAAAAAGA+TGG | + | chr1_3:72583414-72583433 | Msa0139180:CDS | 30.0% | |
| !!! | TTTTGATGAACGTTTTGAAG+TGG | - | chr1_3:72583491-72583510 | None:intergenic | 30.0% |
| ATACATAATTACGTCCTTAG+TGG | - | chr1_3:72583854-72583873 | None:intergenic | 30.0% | |
| ! | GGATGTTATGTCTTTTTATG+TGG | + | chr1_3:72583993-72584012 | Msa0139180:intron | 30.0% |
| AACAATAGCTGCTTGAATAT+TGG | + | chr1_3:72584055-72584074 | Msa0139180:intron | 30.0% | |
| AAATCAAAGTTTGTACAACC+CGG | + | chr1_3:72584141-72584160 | Msa0139180:CDS | 30.0% | |
| TAATCTAGTGTTCCTATTTG+TGG | + | chr1_3:72584549-72584568 | Msa0139180:intron | 30.0% | |
| AATCTAGTGTTCCTATTTGT+GGG | + | chr1_3:72584550-72584569 | Msa0139180:intron | 30.0% | |
| ! | ATGCTGTTATTTGTTAGATG+TGG | + | chr1_3:72584627-72584646 | Msa0139180:intron | 30.0% |
| !! | AAGTTTGTTGTTGATGATGA+TGG | + | chr1_3:72584988-72585007 | Msa0139180:CDS | 30.0% |
| AAATATGTTATCTCTAGCCT+TGG | + | chr1_3:72585021-72585040 | Msa0139180:CDS | 30.0% | |
| ! | TTTTATTCACCCAGATCATT+GGG | + | chr1_3:72585137-72585156 | Msa0139180:CDS | 30.0% |
| !!! | GGGTTGTTTTTGTCAATTTT+AGG | + | chr1_3:72585157-72585176 | Msa0139180:CDS | 30.0% |
| !! | TTTTGTCAATTTTAGGAGGA+AGG | + | chr1_3:72585164-72585183 | Msa0139180:CDS | 30.0% |
| CACAAAAAAATGCAAGAAGT+AGG | + | chr1_3:72585280-72585299 | Msa0139180:CDS | 30.0% | |
| TACTTGTAGGAATTGAGATA+TGG | + | chr1_3:72585483-72585502 | Msa0139180:intron | 30.0% | |
| ! | TTCATTGACAAATTTTCCCT+TGG | - | chr1_3:72585556-72585575 | None:intergenic | 30.0% |
| TTCAATGTTATGACCTCTTT+AGG | - | chr1_3:72585694-72585713 | None:intergenic | 30.0% | |
| GTCAAGCATTTGCATTAATA+AGG | - | chr1_3:72586070-72586089 | None:intergenic | 30.0% | |
| GTAATGTTTGTGCAATAGTT+TGG | - | chr1_3:72586124-72586143 | None:intergenic | 30.0% | |
| TATATATAATCGATCCCAAG+TGG | + | chr1_3:72586162-72586181 | Msa0139180:three_prime_UTR | 30.0% | |
| CATTCATAAAACTTCGCTTT+AGG | - | chr1_3:72586212-72586231 | None:intergenic | 30.0% | |
| ! | ATGCCTGATTTTATATTCCT+CGG | + | chr1_3:72586229-72586248 | Msa0139180:three_prime_UTR | 30.0% |
| ATTGTGCATGCATTTATGTT+CGG | + | chr1_3:72586319-72586338 | Msa0139180:three_prime_UTR | 30.0% | |
| TATCACATCAAGTGTTTGTG+TGG | + | chr1_3:72579944-72579963 | Msa0139180:intron | 35.0% | |
| ATCACATCAAGTGTTTGTGT+GGG | + | chr1_3:72579945-72579964 | Msa0139180:intron | 35.0% | |
| TTTGCTTCATAGAACGAACT+TGG | - | chr1_3:72580037-72580056 | None:intergenic | 35.0% | |
| CCAATAAAGCATACAATCGT+TGG | - | chr1_3:72580110-72580129 | None:intergenic | 35.0% | |
| CCAACGATTGTATGCTTTAT+TGG | + | chr1_3:72580107-72580126 | Msa0139180:intron | 35.0% | |
| CACTTCAAAATGGAAATCAG+GGG | + | chr1_3:72580168-72580187 | Msa0139180:intron | 35.0% | |
| AAAATGGAAATCAGGGGAAA+AGG | + | chr1_3:72580174-72580193 | Msa0139180:intron | 35.0% | |
| ! | GAAAACAGTCTTTTCAATCG+AGG | - | chr1_3:72580262-72580281 | None:intergenic | 35.0% |
| !! | GCAGTTGATAATAACAACGA+TGG | + | chr1_3:72580316-72580335 | Msa0139180:intron | 35.0% |
| ATAACAACGATGGAATGATG+AGG | + | chr1_3:72580326-72580345 | Msa0139180:intron | 35.0% | |
| AATTTGACCTGAAACACAGT+TGG | + | chr1_3:72580377-72580396 | Msa0139180:intron | 35.0% | |
| TAGACATCGATATCATTTCC+TGG | - | chr1_3:72580586-72580605 | None:intergenic | 35.0% | |
| TAAATCTGTGTCTCTGATGA+AGG | - | chr1_3:72580858-72580877 | None:intergenic | 35.0% | |
| GTAAAAAGCCAAAGAAAGCA+GGG | + | chr1_3:72580986-72581005 | Msa0139180:intron | 35.0% | |
| !!! | TCCTTTTTTTCTGGTTTGGA+GGG | - | chr1_3:72581053-72581072 | None:intergenic | 35.0% |
| ! | CTTTTCTTCTTCCAAATTGG+AGG | - | chr1_3:72581105-72581124 | None:intergenic | 35.0% |
| CTTTGAACTTCCATATTGGA+AGG | + | chr1_3:72581131-72581150 | Msa0139180:intron | 35.0% | |
| AGAAGATTGTCCTTCCAATA+TGG | - | chr1_3:72581144-72581163 | None:intergenic | 35.0% | |
| ! | CATTTTTCTCGATATGCATC+GGG | - | chr1_3:72581182-72581201 | None:intergenic | 35.0% |
| GCATATCGAGAAAAATGTGT+TGG | + | chr1_3:72581185-72581204 | Msa0139180:intron | 35.0% | |
| ! | TTCCATTTTCATTGCACCAA+AGG | - | chr1_3:72581305-72581324 | None:intergenic | 35.0% |
| CCAGTCAAAGTAAAAATTGC+CGG | - | chr1_3:72581336-72581355 | None:intergenic | 35.0% | |
| ! | TTTGACTGGTCAAAGTAAGA+GGG | + | chr1_3:72581347-72581366 | Msa0139180:intron | 35.0% |
| ! | ATGTTGCTTGAATAACCATC+AGG | - | chr1_3:72581405-72581424 | None:intergenic | 35.0% |
| !! | CATTTCTAGATGCATTGACT+TGG | + | chr1_3:72581422-72581441 | Msa0139180:intron | 35.0% |
| !! | TTGGAAGCTCTTAAGTTGAA+AGG | + | chr1_3:72581441-72581460 | Msa0139180:intron | 35.0% |
| AACTTCTACCTTTAGCCATT+CGG | + | chr1_3:72581502-72581521 | Msa0139180:intron | 35.0% | |
| AATACTGCTGAAACTTCAGT+AGG | - | chr1_3:72581537-72581556 | None:intergenic | 35.0% | |
| GGCATAAAGTGAGGATAATT+TGG | - | chr1_3:72581635-72581654 | None:intergenic | 35.0% | |
| TTTACATGTGGCATAAAGTG+AGG | - | chr1_3:72581644-72581663 | None:intergenic | 35.0% | |
| GTTGAAGAAGTTAAACTTGG+AGG | + | chr1_3:72581717-72581736 | Msa0139180:intron | 35.0% | |
| ATACATCCATCGATACTGAA+CGG | - | chr1_3:72581745-72581764 | None:intergenic | 35.0% | |
| GACATAATTTACCTTTCGAC+AGG | - | chr1_3:72581768-72581787 | None:intergenic | 35.0% | |
| GTAATAAAGCACAACCAGAA+GGG | + | chr1_3:72581890-72581909 | Msa0139180:intron | 35.0% | |
| AGATTCTTACATACGGTTCA+AGG | + | chr1_3:72581941-72581960 | Msa0139180:intron | 35.0% | |
| TGAGACTAAATGGAATCAAC+CGG | + | chr1_3:72581978-72581997 | Msa0139180:intron | 35.0% | |
| TTAGATAGTCCTCAACTACA+GGG | - | chr1_3:72582158-72582177 | None:intergenic | 35.0% | |
| ATTAGATAGTCCTCAACTAC+AGG | - | chr1_3:72582159-72582178 | None:intergenic | 35.0% | |
| ATACTTCTGTACTCCCTATT+TGG | - | chr1_3:72582251-72582270 | None:intergenic | 35.0% | |
| ! | TTCATAAAGAGTTTGCTCGT+TGG | + | chr1_3:72582327-72582346 | Msa0139180:intron | 35.0% |
| CAAACTCTGTGAACCTAAAT+GGG | - | chr1_3:72582380-72582399 | None:intergenic | 35.0% | |
| AACAATCTTGACACCATTGA+TGG | + | chr1_3:72582463-72582482 | Msa0139180:intron | 35.0% | |
| ATCTTTATCTGGTCCATCAA+TGG | - | chr1_3:72582479-72582498 | None:intergenic | 35.0% | |
| TTCACTGCATACAATGTCAA+TGG | + | chr1_3:72582544-72582563 | Msa0139180:intron | 35.0% | |
| ! | ACACAAAACTGTGGAGTTTT+TGG | + | chr1_3:72582607-72582626 | Msa0139180:intron | 35.0% |
| AATGATGCCCAAATGAGATT+TGG | + | chr1_3:72582661-72582680 | Msa0139180:intron | 35.0% | |
| GCCCATTCACATTTAAACAT+TGG | - | chr1_3:72582751-72582770 | None:intergenic | 35.0% | |
| TTTAATGCTTCTTGGGTTTG+TGG | - | chr1_3:72582779-72582798 | None:intergenic | 35.0% | |
| GGGTGGAAATGATGAAATTA+TGG | + | chr1_3:72582978-72582997 | Msa0139180:intron | 35.0% | |
| CAAACATCATCATCTGTAGT+CGG | - | chr1_3:72583081-72583100 | None:intergenic | 35.0% | |
| TAACAATCACAAGTACATCG+GGG | - | chr1_3:72583169-72583188 | None:intergenic | 35.0% | |
| TGCAAATAGCTAAGCAAAGT+AGG | - | chr1_3:72583318-72583337 | None:intergenic | 35.0% | |
| GCAAGTTCTTGAGAGATAAT+TGG | - | chr1_3:72583454-72583473 | None:intergenic | 35.0% | |
| TGAAGAGTTTATGCTTCATC+TGG | + | chr1_3:72583590-72583609 | Msa0139180:intron | 35.0% | |
| ! | ATCACGTACAAGTTGACATT+CGG | - | chr1_3:72583644-72583663 | None:intergenic | 35.0% |
| ATAACCTATAACGTGCGTTT+GGG | - | chr1_3:72583695-72583714 | None:intergenic | 35.0% | |
| AATAACCTATAACGTGCGTT+TGG | - | chr1_3:72583696-72583715 | None:intergenic | 35.0% | |
| !! | TTCTTTCTTTAGGTTGCGAA+TGG | + | chr1_3:72584117-72584136 | Msa0139180:intron | 35.0% |
| ATCTAGTGTTCCTATTTGTG+GGG | + | chr1_3:72584551-72584570 | Msa0139180:intron | 35.0% | |
| ! | CTGTTATTTGTTAGATGTGG+CGG | + | chr1_3:72584630-72584649 | Msa0139180:intron | 35.0% |
| ! | TGTTATTTGTTAGATGTGGC+GGG | + | chr1_3:72584631-72584650 | Msa0139180:intron | 35.0% |
| AAGAATCTCCAAATGGAACT+AGG | + | chr1_3:72584695-72584714 | Msa0139180:CDS | 35.0% | |
| GTCATTATCCTAGTTCCATT+TGG | - | chr1_3:72584706-72584725 | None:intergenic | 35.0% | |
| AGCAAATTATTTGGGCCAAT+TGG | + | chr1_3:72584774-72584793 | Msa0139180:CDS | 35.0% | |
| CTTTAAATTGCCTTGCCAAT+TGG | - | chr1_3:72584792-72584811 | None:intergenic | 35.0% | |
| TCCCATCTTTCAACCATTAT+CGG | - | chr1_3:72584820-72584839 | None:intergenic | 35.0% | |
| ! | ATGGGATGCTGCAATTTTAA+AGG | + | chr1_3:72584834-72584853 | Msa0139180:CDS | 35.0% |
| TGATCTGGGTGAATAAAACT+TGG | - | chr1_3:72585135-72585154 | None:intergenic | 35.0% | |
| !! | GTTTTATTCACCCAGATCAT+TGG | + | chr1_3:72585136-72585155 | Msa0139180:CDS | 35.0% |
| CAAAAACAACCCAATGATCT+GGG | - | chr1_3:72585149-72585168 | None:intergenic | 35.0% | |
| ACAAAAACAACCCAATGATC+TGG | - | chr1_3:72585150-72585169 | None:intergenic | 35.0% | |
| CAAAAAACTCCTCATACACT+AGG | + | chr1_3:72585309-72585328 | Msa0139180:CDS | 35.0% | |
| !! | TCAGAAAAGATGAGTTGGTA+TGG | + | chr1_3:72585349-72585368 | Msa0139180:intron | 35.0% |
| ATATGGTCGAGAATATAGCA+GGG | + | chr1_3:72585500-72585519 | Msa0139180:CDS | 35.0% | |
| ! | TTAATTTTAGGCGAGCTATG+AGG | - | chr1_3:72585644-72585663 | None:intergenic | 35.0% |
| CACTGTATTATTGCCTAAAG+AGG | + | chr1_3:72585678-72585697 | Msa0139180:intron | 35.0% | |
| TCATGAACTGTTGTATATGC+AGG | + | chr1_3:72585795-72585814 | Msa0139180:intron | 35.0% | |
| ATTTGCCAATGTGTTTGGAA+AGG | + | chr1_3:72585864-72585883 | Msa0139180:CDS | 35.0% | |
| ATGTTCCTTTCCAAACACAT+TGG | - | chr1_3:72585872-72585891 | None:intergenic | 35.0% | |
| CTCCTTAAGAGAATCAATCT+CGG | - | chr1_3:72586010-72586029 | None:intergenic | 35.0% | |
| ! | GATTGATTCTCTTAAGGAGA+AGG | + | chr1_3:72586011-72586030 | Msa0139180:CDS | 35.0% |
| !! | TTCAGAAGTTGATGTCTTGA+AGG | + | chr1_3:72586035-72586054 | Msa0139180:CDS | 35.0% |
| !!! | CCTCTTTGTCTCTAGAATTT+TGG | - | chr1_3:72586092-72586111 | None:intergenic | 35.0% |
| ! | CCAAAATTCTAGAGACAAAG+AGG | + | chr1_3:72586089-72586108 | Msa0139180:CDS | 35.0% |
| ATGCCGAGGAATATAAAATC+AGG | - | chr1_3:72586235-72586254 | None:intergenic | 35.0% | |
| !! | GCTTCTCTGTTTTAGACAAT+AGG | + | chr1_3:72586265-72586284 | Msa0139180:three_prime_UTR | 35.0% |
| TTGTGCATGCATTTATGTTC+GGG | + | chr1_3:72586320-72586339 | Msa0139180:three_prime_UTR | 35.0% | |
| TGATAGGGATCAGACAAATG+AGG | + | chr1_3:72579754-72579773 | Msa0139180:CDS | 40.0% | |
| TTCCAAGTGTAAGCGAAGAA+AGG | + | chr1_3:72579822-72579841 | Msa0139180:CDS | 40.0% | |
| TTCCTTTCTTCGCTTACACT+TGG | - | chr1_3:72579827-72579846 | None:intergenic | 40.0% | |
| GAGAACAACCCTTGTATGAA+GGG | + | chr1_3:72579882-72579901 | Msa0139180:CDS | 40.0% | |
| CTTGTACACCCTTCATACAA+GGG | - | chr1_3:72579893-72579912 | None:intergenic | 40.0% | |
| TCTTGTACACCCTTCATACA+AGG | - | chr1_3:72579894-72579913 | None:intergenic | 40.0% | |
| !! | ATCCTAGAGATTCTGAAGCT+TGG | + | chr1_3:72580350-72580369 | Msa0139180:intron | 40.0% |
| TTCCAAGCTTCAGAATCTCT+AGG | - | chr1_3:72580355-72580374 | None:intergenic | 40.0% | |
| ATGCAAACCAACTGTGTTTC+AGG | - | chr1_3:72580387-72580406 | None:intergenic | 40.0% | |
| ! | AGTGACGGCTTTAATCCATT+TGG | + | chr1_3:72580439-72580458 | Msa0139180:intron | 40.0% |
| ATTCCTGGTAAATATTCGCC+AGG | + | chr1_3:72580565-72580584 | Msa0139180:intron | 40.0% | |
| TTTCCTGGCGAATATTTACC+AGG | - | chr1_3:72580571-72580590 | None:intergenic | 40.0% | |
| CTACTTACAACCTCTAGTCA+AGG | + | chr1_3:72580603-72580622 | Msa0139180:intron | 40.0% | |
| TCAAGGAGTTGAAGGAGTTA+TGG | + | chr1_3:72580620-72580639 | Msa0139180:intron | 40.0% | |
| TTGAAGGAGTTATGGACAAC+TGG | + | chr1_3:72580628-72580647 | Msa0139180:intron | 40.0% | |
| AAGACGACAAGGTTTAGTGT+CGG | - | chr1_3:72580794-72580813 | None:intergenic | 40.0% | |
| TTGAACAAGGTTCGCTTTGA+TGG | + | chr1_3:72580880-72580899 | Msa0139180:intron | 40.0% | |
| TGATGTCCAGATAACGTTAC+CGG | - | chr1_3:72580928-72580947 | None:intergenic | 40.0% | |
| TGGACATCAAGTTCTTCAAC+AGG | + | chr1_3:72580939-72580958 | Msa0139180:intron | 40.0% | |
| GGTAAAAAGCCAAAGAAAGC+AGG | + | chr1_3:72580985-72581004 | Msa0139180:intron | 40.0% | |
| GCAGGGTTGGGAAAAAAAAA+AGG | + | chr1_3:72581003-72581022 | Msa0139180:intron | 40.0% | |
| ACCCTCCAAACCAGAAAAAA+AGG | + | chr1_3:72581049-72581068 | Msa0139180:intron | 40.0% | |
| !!! | GTCCTTTTTTTCTGGTTTGG+AGG | - | chr1_3:72581054-72581073 | None:intergenic | 40.0% |
| !!! | CCTGTCCTTTTTTTCTGGTT+TGG | - | chr1_3:72581057-72581076 | None:intergenic | 40.0% |
| CCAAACCAGAAAAAAAGGAC+AGG | + | chr1_3:72581054-72581073 | Msa0139180:intron | 40.0% | |
| !!! | TCTTGCCTGTCCTTTTTTTC+TGG | - | chr1_3:72581062-72581081 | None:intergenic | 40.0% |
| AGAAAAAAAGGACAGGCAAG+AGG | + | chr1_3:72581061-72581080 | Msa0139180:intron | 40.0% | |
| ATCTTATGCCCATAGCTTCA+AGG | - | chr1_3:72581278-72581297 | None:intergenic | 40.0% | |
| ! | GACCTTTGGTGCAATGAAAA+TGG | + | chr1_3:72581300-72581319 | Msa0139180:intron | 40.0% |
| ! | CCGGCAATTTTTACTTTGAC+TGG | + | chr1_3:72581333-72581352 | Msa0139180:intron | 40.0% |
| ! | CTTTGACTGGTCAAAGTAAG+AGG | + | chr1_3:72581346-72581365 | Msa0139180:intron | 40.0% |
| AAGAATATCACAGTGCCTGA+TGG | + | chr1_3:72581387-72581406 | Msa0139180:intron | 40.0% | |
| TCATGATGGCCACATATTGA+TGG | + | chr1_3:72581476-72581495 | Msa0139180:intron | 40.0% | |
| ! | GAAGTTGGTCCATCAATATG+TGG | - | chr1_3:72581488-72581507 | None:intergenic | 40.0% |
| GAATGGCTAAAGGTAGAAGT+TGG | - | chr1_3:72581503-72581522 | None:intergenic | 40.0% | |
| AATGTTGTCCGAATGGCTAA+AGG | - | chr1_3:72581513-72581532 | None:intergenic | 40.0% | |
| AGTAGGTAATGTTGTCCGAA+TGG | - | chr1_3:72581520-72581539 | None:intergenic | 40.0% | |
| ATGACAGTGAAGAATGATGG+AGG | - | chr1_3:72581675-72581694 | None:intergenic | 40.0% | |
| TCCATCATTCTTCACTGTCA+TGG | + | chr1_3:72581674-72581693 | Msa0139180:intron | 40.0% | |
| ACCATGACAGTGAAGAATGA+TGG | - | chr1_3:72581678-72581697 | None:intergenic | 40.0% | |
| TACATCCATCGATACTGAAC+GGG | - | chr1_3:72581744-72581763 | None:intergenic | 40.0% | |
| CGTAATAAAGCACAACCAGA+AGG | + | chr1_3:72581889-72581908 | Msa0139180:intron | 40.0% | |
| ! | ACATACGGTTCAAGGTATCT+AGG | + | chr1_3:72581949-72581968 | Msa0139180:intron | 40.0% |
| GAGACTAAATGGAATCAACC+GGG | + | chr1_3:72581979-72581998 | Msa0139180:intron | 40.0% | |
| GCCGAATTATTTCCTAGAGT+TGG | + | chr1_3:72582051-72582070 | Msa0139180:intron | 40.0% | |
| ! | CCAATAGGTTTTCCAACTCT+AGG | - | chr1_3:72582066-72582085 | None:intergenic | 40.0% |
| CCTAGAGTTGGAAAACCTAT+TGG | + | chr1_3:72582063-72582082 | Msa0139180:intron | 40.0% | |
| AGAGTTGGAAAACCTATTGG+TGG | + | chr1_3:72582066-72582085 | Msa0139180:intron | 40.0% | |
| TAACGTGAAGATCCACCAAT+AGG | - | chr1_3:72582081-72582100 | None:intergenic | 40.0% | |
| GTATGATACGAAGTCAGCTA+AGG | + | chr1_3:72582267-72582286 | Msa0139180:intron | 40.0% | |
| !! | TACTTCTGAGGTAGACAAGA+AGG | + | chr1_3:72582304-72582323 | Msa0139180:intron | 40.0% |
| GCAAACTCTGTGAACCTAAA+TGG | - | chr1_3:72582381-72582400 | None:intergenic | 40.0% | |
| !! | GTTCTCATTAGTCTTGCTCA+AGG | + | chr1_3:72582499-72582518 | Msa0139180:intron | 40.0% |
| ATGCCCAAATGAGATTTGGA+GGG | + | chr1_3:72582665-72582684 | Msa0139180:intron | 40.0% | |
| ATCATTGAGCTTCGGTATGA+TGG | + | chr1_3:72582715-72582734 | Msa0139180:intron | 40.0% | |
| CTCATCATCTTCATGTTGTC+CGG | - | chr1_3:72582851-72582870 | None:intergenic | 40.0% | |
| ATGATGAGAAGGAAGAAGGA+TGG | + | chr1_3:72582914-72582933 | Msa0139180:intron | 40.0% | |
| TCTCTTGGCTTCAAATGAAC+AGG | - | chr1_3:72582946-72582965 | None:intergenic | 40.0% | |
| CCAAGAGACTTGTATGACAT+GGG | + | chr1_3:72582958-72582977 | Msa0139180:intron | 40.0% | |
| GCAAGCAAAGTTCGAAAGAA+TGG | + | chr1_3:72583393-72583412 | Msa0139180:CDS | 40.0% | |
| !!! | TGATGAACGTTTTGAAGTGG+CGG | - | chr1_3:72583488-72583507 | None:intergenic | 40.0% |
| TGGATAGAACTGTCAAACTG+TGG | + | chr1_3:72584013-72584032 | Msa0139180:intron | 40.0% | |
| CATGTGGTAAACCTTGTGAA+CGG | - | chr1_3:72584197-72584216 | None:intergenic | 40.0% | |
| CATGTGGTAAACCTTGTGAA+CGG | - | chr1_3:72584197-72584216 | None:intergenic | 40.0% | |
| GGATCTGTAACATGATCATG+CGG | - | chr1_3:72584294-72584313 | None:intergenic | 40.0% | |
| AAAGAAACCAAGATACTGGG+AGG | + | chr1_3:72584509-72584528 | Msa0139180:CDS | 40.0% | |
| AAAAACACAGCCCCACAAAT+AGG | - | chr1_3:72584564-72584583 | None:intergenic | 40.0% | |
| !!! | GGCTGTGTTTTTTCTCTTGT+TGG | + | chr1_3:72584572-72584591 | Msa0139180:intron | 40.0% |
| TTCAAGGAGACGTTTAACAG+TGG | + | chr1_3:72584660-72584679 | Msa0139180:CDS | 40.0% | |
| GTGCTTGAAGAATCTCCAAA+TGG | + | chr1_3:72584688-72584707 | Msa0139180:CDS | 40.0% | |
| GAACTAGGATAATGACTCGA+TGG | + | chr1_3:72584710-72584729 | Msa0139180:CDS | 40.0% | |
| ATGGAATGATGTTCCTCAAC+CGG | + | chr1_3:72584729-72584748 | Msa0139180:CDS | 40.0% | |
| ATTATTTGGGCCAATTGGCA+AGG | + | chr1_3:72584779-72584798 | Msa0139180:CDS | 40.0% | |
| ! | TCCCGATAATGGTTGAAAGA+TGG | + | chr1_3:72584815-72584834 | Msa0139180:CDS | 40.0% |
| CCCATCTTTCAACCATTATC+GGG | - | chr1_3:72584819-72584838 | None:intergenic | 40.0% | |
| ! | CCCGATAATGGTTGAAAGAT+GGG | + | chr1_3:72584816-72584835 | Msa0139180:CDS | 40.0% |
| !! | TCTCTAGCCTTGGAAAGAAA+TGG | + | chr1_3:72585031-72585050 | Msa0139180:CDS | 40.0% |
| ! | TAGCCTTGGAAAGAAATGGA+AGG | + | chr1_3:72585035-72585054 | Msa0139180:CDS | 40.0% |
| CATCCTTCCATTTCTTTCCA+AGG | - | chr1_3:72585041-72585060 | None:intergenic | 40.0% | |
| CTTGGAAAGAAATGGAAGGA+TGG | + | chr1_3:72585039-72585058 | Msa0139180:CDS | 40.0% | |
| CAAATGGGAACTCACATTAG+AGG | + | chr1_3:72585089-72585108 | Msa0139180:CDS | 40.0% | |
| TGCGATCAGAAAAGATGAGT+TGG | + | chr1_3:72585344-72585363 | Msa0139180:CDS | 40.0% | |
| TCTGTGTATGCAATCTCATC+TGG | + | chr1_3:72585409-72585428 | Msa0139180:intron | 40.0% | |
| GATATGGTCGAGAATATAGC+AGG | + | chr1_3:72585499-72585518 | Msa0139180:CDS | 40.0% | |
| TATGGTCGAGAATATAGCAG+GGG | + | chr1_3:72585501-72585520 | Msa0139180:CDS | 40.0% | |
| TGTTTCGCTTAAAGATGCCA+AGG | + | chr1_3:72585536-72585555 | Msa0139180:CDS | 40.0% | |
| GTTTCGCTTAAAGATGCCAA+GGG | + | chr1_3:72585537-72585556 | Msa0139180:CDS | 40.0% | |
| ! | GAAGCATTTGCCAATGTGTT+TGG | + | chr1_3:72585859-72585878 | Msa0139180:CDS | 40.0% |
| !! | CATTTTCTCATTAGCCTCGA+TGG | - | chr1_3:72585974-72585993 | None:intergenic | 40.0% |
| ! | AGCCGAGATTGATTCTCTTA+AGG | + | chr1_3:72586005-72586024 | Msa0139180:CDS | 40.0% |
| ! | CAGTTGATTTAGGTCCACTT+GGG | - | chr1_3:72586179-72586198 | None:intergenic | 40.0% |
| ! | ACGATGCGTTTGGAGTTGAT+AGG | + | chr1_3:72579738-72579757 | Msa0139180:CDS | 45.0% |
| !! | CGATGCGTTTGGAGTTGATA+GGG | + | chr1_3:72579739-72579758 | Msa0139180:CDS | 45.0% |
| GGAGAACAACCCTTGTATGA+AGG | + | chr1_3:72579881-72579900 | Msa0139180:CDS | 45.0% | |
| ATACAATCGTTGGGACATGC+AGG | - | chr1_3:72580100-72580119 | None:intergenic | 45.0% | |
| ATTGGGGTGAAGATGAAGAC+AGG | + | chr1_3:72580125-72580144 | Msa0139180:intron | 45.0% | |
| TTGGGGTGAAGATGAAGACA+GGG | + | chr1_3:72580126-72580145 | Msa0139180:intron | 45.0% | |
| TTCTTCATCAAAGACTGCCG+AGG | + | chr1_3:72580279-72580298 | Msa0139180:intron | 45.0% | |
| TGCATGCCATCTCATATCCT+CGG | - | chr1_3:72580299-72580318 | None:intergenic | 45.0% | |
| AATGCAAGACGCAAGTTTCG+CGG | - | chr1_3:72580415-72580434 | None:intergenic | 45.0% | |
| CGTCTTGCATTAGCTAGTGA+CGG | + | chr1_3:72580424-72580443 | Msa0139180:intron | 45.0% | |
| TTGTATGGGATGAGCACAAC+TGG | - | chr1_3:72580493-72580512 | None:intergenic | 45.0% | |
| GTATCTTTCATGCACACCCA+TGG | - | chr1_3:72580523-72580542 | None:intergenic | 45.0% | |
| ACCTCTAGTCAAGGAGTTGA+AGG | + | chr1_3:72580612-72580631 | Msa0139180:intron | 45.0% | |
| TCCTTCAACTCCTTGACTAG+AGG | - | chr1_3:72580616-72580635 | None:intergenic | 45.0% | |
| CATTACACGCAACCTTGATG+TGG | + | chr1_3:72580689-72580708 | Msa0139180:intron | 45.0% | |
| GTCACTAATCGTCCACATCA+AGG | - | chr1_3:72580704-72580723 | None:intergenic | 45.0% | |
| GTGGACGATTAGTGACTTTC+CGG | + | chr1_3:72580708-72580727 | Msa0139180:intron | 45.0% | |
| TGGACGATTAGTGACTTTCC+GGG | + | chr1_3:72580709-72580728 | Msa0139180:intron | 45.0% | |
| ATTAGTGACTTTCCGGGCTT+AGG | + | chr1_3:72580715-72580734 | Msa0139180:intron | 45.0% | |
| ! | GCTTAGGTATGCTTTCTGGT+TGG | + | chr1_3:72580731-72580750 | Msa0139180:intron | 45.0% |
| TCTGGTTGGAACACATACAC+CGG | + | chr1_3:72580745-72580764 | Msa0139180:intron | 45.0% | |
| ACACGAAGGACATGCAAAAC+CGG | - | chr1_3:72580767-72580786 | None:intergenic | 45.0% | |
| !! | TTAGTGTCGGTGTTACACGA+AGG | - | chr1_3:72580781-72580800 | None:intergenic | 45.0% |
| AAAGCCAAAGAAAGCAGGGT+TGG | + | chr1_3:72580990-72581009 | Msa0139180:intron | 45.0% | |
| AAGCCAAAGAAAGCAGGGTT+GGG | + | chr1_3:72580991-72581010 | Msa0139180:intron | 45.0% | |
| TTTCCCAACCCTGCTTTCTT+TGG | - | chr1_3:72580997-72581016 | None:intergenic | 45.0% | |
| GGCAAGAAACAACCTACACA+AGG | + | chr1_3:72581024-72581043 | Msa0139180:intron | 45.0% | |
| CAGAAGATGACCCTCCAATT+TGG | + | chr1_3:72581091-72581110 | Msa0139180:intron | 45.0% | |
| TCGAAGAGACCTTGAAGCTA+TGG | + | chr1_3:72581266-72581285 | Msa0139180:intron | 45.0% | |
| CGAAGAGACCTTGAAGCTAT+GGG | + | chr1_3:72581267-72581286 | Msa0139180:intron | 45.0% | |
| TGGGCATAAGATCTGACCTT+TGG | + | chr1_3:72581286-72581305 | Msa0139180:intron | 45.0% | |
| GGAACGTTGAAGAGTCATGA+TGG | + | chr1_3:72581462-72581481 | Msa0139180:intron | 45.0% | |
| CTTCACTGTCATGGTTCACT+TGG | + | chr1_3:72581683-72581702 | Msa0139180:intron | 45.0% | |
| GATGGATGTATCCTGTCGAA+AGG | + | chr1_3:72581754-72581773 | Msa0139180:intron | 45.0% | |
| CAGAAGGGTCTATTGCAGAA+GGG | + | chr1_3:72581905-72581924 | Msa0139180:intron | 45.0% | |
| GAAATAATTCGGCTACACGC+GGG | - | chr1_3:72582044-72582063 | None:intergenic | 45.0% | |
| GGAAATAATTCGGCTACACG+CGG | - | chr1_3:72582045-72582064 | None:intergenic | 45.0% | |
| AACAAACTGCCCTGTAGTTG+AGG | + | chr1_3:72582146-72582165 | Msa0139180:intron | 45.0% | |
| TAGTGCAAGGACTACTTCTG+AGG | + | chr1_3:72582292-72582311 | Msa0139180:intron | 45.0% | |
| !!! | TGTGGAGTTTTTGGCGTGTT+TGG | + | chr1_3:72582616-72582635 | Msa0139180:intron | 45.0% |
| !!! | GTGGAGTTTTTGGCGTGTTT+GGG | + | chr1_3:72582617-72582636 | Msa0139180:intron | 45.0% |
| GATGCCCAAATGAGATTTGG+AGG | + | chr1_3:72582664-72582683 | Msa0139180:intron | 45.0% | |
| TGCCCAAATGAGATTTGGAG+GGG | + | chr1_3:72582666-72582685 | Msa0139180:intron | 45.0% | |
| CACCCCTCCAAATCTCATTT+GGG | - | chr1_3:72582671-72582690 | None:intergenic | 45.0% | |
| GCTTCTGACGCTGTAATGAA+TGG | - | chr1_3:72582874-72582893 | None:intergenic | 45.0% | |
| TACAGCGTCAGAAGCTCAAA+TGG | + | chr1_3:72582879-72582898 | Msa0139180:intron | 45.0% | |
| GTGGATGATGAGAAGGAAGA+AGG | + | chr1_3:72582910-72582929 | Msa0139180:intron | 45.0% | |
| GCCAAGAGACTTGTATGACA+TGG | + | chr1_3:72582957-72582976 | Msa0139180:intron | 45.0% | |
| CCCATGTCATACAAGTCTCT+TGG | - | chr1_3:72582961-72582980 | None:intergenic | 45.0% | |
| AGAGACTTGTATGACATGGG+TGG | + | chr1_3:72582961-72582980 | Msa0139180:intron | 45.0% | |
| !! | TGTGATGGGTATGGCTCAAT+GGG | - | chr1_3:72583006-72583025 | None:intergenic | 45.0% |
| !! | TTGTGATGGGTATGGCTCAA+TGG | - | chr1_3:72583007-72583026 | None:intergenic | 45.0% |
| TCGAACTTTGCTTGCTCGTA+TGG | - | chr1_3:72583388-72583407 | None:intergenic | 45.0% | |
| !!! | ACGTTTTGAAGTGGCGGAAT+AGG | - | chr1_3:72583482-72583501 | None:intergenic | 45.0% |
| CGAAATTAGTGAGACTGACG+TGG | - | chr1_3:72583618-72583637 | None:intergenic | 45.0% | |
| !!! | TGAACGGAGGCGCTTTTTAT+TGG | - | chr1_3:72584181-72584200 | None:intergenic | 45.0% |
| GTAACATGATCATGCGGTGA+AGG | - | chr1_3:72584288-72584307 | None:intergenic | 45.0% | |
| ! | GGTGAAGGTGTAACATGTGT+AGG | - | chr1_3:72584345-72584364 | None:intergenic | 45.0% |
| ! | TGTGTAGGTGTCACATGTGT+AGG | - | chr1_3:72584366-72584385 | None:intergenic | 45.0% |
| ! | AGGTACGGACTATCATGTGT+AGG | - | chr1_3:72584381-72584400 | None:intergenic | 45.0% |
| ACACATGATAGTCCGTACCT+TGG | + | chr1_3:72584381-72584400 | Msa0139180:CDS | 45.0% | |
| ACATCAACCTCCCAGTATCT+TGG | - | chr1_3:72584519-72584538 | None:intergenic | 45.0% | |
| AATGATGTTCCTCAACCGGT+GGG | + | chr1_3:72584733-72584752 | Msa0139180:CDS | 45.0% | |
| AATTTAGCAGATTGCCCCAC+CGG | - | chr1_3:72584751-72584770 | None:intergenic | 45.0% | |
| GAGTCAGTTCCTAGTGTATG+AGG | - | chr1_3:72585321-72585340 | None:intergenic | 45.0% | |
| GTGTTTGGAAAGGAACATGC+TGG | + | chr1_3:72585874-72585893 | Msa0139180:CDS | 45.0% | |
| TGCTGGATATGTCCGTTCTA+TGG | + | chr1_3:72585891-72585910 | Msa0139180:CDS | 45.0% | |
| GCTGGATATGTCCGTTCTAT+GGG | + | chr1_3:72585892-72585911 | Msa0139180:CDS | 45.0% | |
| CTGGATATGTCCGTTCTATG+GGG | + | chr1_3:72585893-72585912 | Msa0139180:CDS | 45.0% | |
| TTATGCCAAGCCCCATAGAA+CGG | - | chr1_3:72585906-72585925 | None:intergenic | 45.0% | |
| ! | GCAGTTGATTTAGGTCCACT+TGG | - | chr1_3:72586180-72586199 | None:intergenic | 45.0% |
| ACCTAAATCAACTGCCTGAG+TGG | + | chr1_3:72586185-72586204 | Msa0139180:three_prime_UTR | 45.0% | |
| ! | TCCACTCAGGCAGTTGATTT+AGG | - | chr1_3:72586189-72586208 | None:intergenic | 45.0% |
| AAGCTGAACTATGTATGCCG+AGG | - | chr1_3:72586249-72586268 | None:intergenic | 45.0% | |
| AGACTGCCGAGGATATGAGA+TGG | + | chr1_3:72580290-72580309 | Msa0139180:intron | 50.0% | |
| TCCCATACAACACTCCTCCA+TGG | + | chr1_3:72580503-72580522 | Msa0139180:intron | 50.0% | |
| !! | CCCATGGAGGAGTGTTGTAT+GGG | - | chr1_3:72580507-72580526 | None:intergenic | 50.0% |
| CCCATACAACACTCCTCCAT+GGG | + | chr1_3:72580504-72580523 | Msa0139180:intron | 50.0% | |
| !! | ACCCATGGAGGAGTGTTGTA+TGG | - | chr1_3:72580508-72580527 | None:intergenic | 50.0% |
| TCTTTCATGCACACCCATGG+AGG | - | chr1_3:72580520-72580539 | None:intergenic | 50.0% | |
| GGAGTTATGGACAACTGGTG+TGG | + | chr1_3:72580633-72580652 | Msa0139180:intron | 50.0% | |
| ! | CCAGAAAGCATACCTAAGCC+CGG | - | chr1_3:72580730-72580749 | None:intergenic | 50.0% |
| GCAAGAAATGCGTAGTCCAC+CGG | + | chr1_3:72580906-72580925 | Msa0139180:intron | 50.0% | |
| AGTCCACCGGTAACGTTATC+TGG | + | chr1_3:72580919-72580938 | Msa0139180:intron | 50.0% | |
| TGTCCAGATAACGTTACCGG+TGG | - | chr1_3:72580925-72580944 | None:intergenic | 50.0% | |
| TTTGGAGGGTCACCTTGTGT+AGG | - | chr1_3:72581039-72581058 | None:intergenic | 50.0% | |
| GGTCTCTTCGAGCATCAACA+TGG | - | chr1_3:72581257-72581276 | None:intergenic | 50.0% | |
| CCTTCTGCAATAGACCCTTC+TGG | - | chr1_3:72581907-72581926 | None:intergenic | 50.0% | |
| CCAGAAGGGTCTATTGCAGA+AGG | + | chr1_3:72581904-72581923 | Msa0139180:intron | 50.0% | |
| GTCAGCTAAGGAGTAGTGCA+AGG | + | chr1_3:72582279-72582298 | Msa0139180:intron | 50.0% | |
| GCACCCCTCCAAATCTCATT+TGG | - | chr1_3:72582672-72582691 | None:intergenic | 50.0% | |
| !! | TTTGGAGGGGTGCCTTACTA+TGG | + | chr1_3:72582679-72582698 | Msa0139180:intron | 50.0% |
| ! | TGATGGGTATGGCTCAATGG+GGG | - | chr1_3:72583004-72583023 | None:intergenic | 50.0% |
| !! | GTGATGGGTATGGCTCAATG+GGG | - | chr1_3:72583005-72583024 | None:intergenic | 50.0% |
| TCAGCCCAAACGCACGTTAT+AGG | + | chr1_3:72583688-72583707 | Msa0139180:intron | 50.0% | |
| !! | AAAAAGCGCCTCCGTTCACA+AGG | + | chr1_3:72584183-72584202 | Msa0139180:CDS | 50.0% |
| GTGGTAAACCTTGTGAACGG+AGG | - | chr1_3:72584194-72584213 | None:intergenic | 50.0% | |
| ! | CGCTTCTTATTGGCTGCATG+TGG | - | chr1_3:72584213-72584232 | None:intergenic | 50.0% |
| !! | TGAACGGAGGCGCTTCTTAT+TGG | - | chr1_3:72584223-72584242 | None:intergenic | 50.0% |
| GTGGTAAACCTTGTGAACGG+AGG | - | chr1_3:72584194-72584213 | None:intergenic | 50.0% | |
| !! | GAAGGTGTCACATGTGTAGG+CGG | - | chr1_3:72584270-72584289 | None:intergenic | 50.0% |
| !! | GGTGAAGGTGTCACATGTGT+AGG | - | chr1_3:72584273-72584292 | None:intergenic | 50.0% |
| !! | GATGGAGGTGTCTCATGTGT+GGG | - | chr1_3:72584321-72584340 | None:intergenic | 50.0% |
| GTAACATGTGTAGGCGATGG+AGG | - | chr1_3:72584336-72584355 | None:intergenic | 50.0% | |
| GGTGTAACATGTGTAGGCGA+TGG | - | chr1_3:72584339-72584358 | None:intergenic | 50.0% | |
| ! | GGTGTCACATGTGTAGGTGA+AGG | - | chr1_3:72584360-72584379 | None:intergenic | 50.0% |
| TCATCTCCAGAGCCAAGGTA+CGG | - | chr1_3:72584396-72584415 | None:intergenic | 50.0% | |
| CATCATCATCTCCAGAGCCA+AGG | - | chr1_3:72584401-72584420 | None:intergenic | 50.0% | |
| !! | ATGTGGCGGGTCATACTTCA+AGG | + | chr1_3:72584644-72584663 | Msa0139180:CDS | 50.0% |
| GAATGATGTTCCTCAACCGG+TGG | + | chr1_3:72584732-72584751 | Msa0139180:CDS | 50.0% | |
| ATGATGTTCCTCAACCGGTG+GGG | + | chr1_3:72584734-72584753 | Msa0139180:CDS | 50.0% | |
| TAGGAGGAAGGCTGAACAAG+TGG | + | chr1_3:72585176-72585195 | Msa0139180:CDS | 50.0% | |
| TATGTCCGTTCTATGGGGCT+TGG | + | chr1_3:72585898-72585917 | Msa0139180:CDS | 50.0% | |
| GAGCGACTAGAGATTCGAGA+TGG | - | chr1_3:72585931-72585950 | None:intergenic | 50.0% | |
| ! | ATTAGCCTCGTCTTCCATCG+AGG | + | chr1_3:72585957-72585976 | Msa0139180:CDS | 50.0% |
| ! | ATTAGCCTCGATGGAAGACG+AGG | - | chr1_3:72585965-72585984 | None:intergenic | 50.0% |
| ! | ACTTCGCTTTAGGTCCACTC+AGG | - | chr1_3:72586202-72586221 | None:intergenic | 50.0% |
| CCGGGCTTAGGTATGCTTTC+TGG | + | chr1_3:72580727-72580746 | Msa0139180:intron | 55.0% | |
| ! | GAGGTCCCGTTCAGTATCGA+TGG | + | chr1_3:72581736-72581755 | Msa0139180:intron | 55.0% |
| TGTACAACCCGGAGCTCTTG+AGG | + | chr1_3:72584152-72584171 | Msa0139180:CDS | 55.0% | |
| ATTGGCTGCCTCAAGAGCTC+CGG | - | chr1_3:72584163-72584182 | None:intergenic | 55.0% | |
| !! | AAGAAGCGCCTCCGTTCACA+AGG | + | chr1_3:72584225-72584244 | Msa0139180:CDS | 55.0% |
| !! | CGATGGAGGTGTCTCATGTG+TGG | - | chr1_3:72584322-72584341 | None:intergenic | 55.0% |
| GATAGTCCGTACCTTGGCTC+TGG | + | chr1_3:72584387-72584406 | Msa0139180:CDS | 55.0% | |
| GGCTCATCGTCTACACGACC+CGG | - | chr1_3:72582000-72582019 | None:intergenic | 60.0% | |
| TTGGCTGCCTCAAGAGCTCC+GGG | - | chr1_3:72584162-72584181 | None:intergenic | 60.0% | |
| GTAGGCGGTGAAGCTGCATG+TGG | - | chr1_3:72584255-72584274 | None:intergenic | 60.0% | |
| GGTGTCTCATGTGTGGGTGG+TGG | - | chr1_3:72584315-72584334 | None:intergenic | 60.0% | |
| !! | GGAGGTGTCTCATGTGTGGG+TGG | - | chr1_3:72584318-72584337 | None:intergenic | 60.0% |
| ! | GCAGATTGCCCCACCGGTTG+AGG | - | chr1_3:72584745-72584764 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72579731 | 72586366 | 72579731 | ID=Msa0139180;Name=Msa0139180 |
| chr1_3 | mRNA | 72579731 | 72586366 | 72579731 | ID=Msa0139180-mRNA-1;Parent=Msa0139180;Name=Msa0139180-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.55|0.6|1|0.66|0.6|10|208|594 |
| chr1_3 | exon | 72579731 | 72579954 | 72579731 | ID=Msa0139180-mRNA-1:exon:25293;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72580010 | 72580076 | 72580010 | ID=Msa0139180-mRNA-1:exon:25294;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72583370 | 72583513 | 72583370 | ID=Msa0139180-mRNA-1:exon:25295;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72584129 | 72584246 | 72584129 | ID=Msa0139180-mRNA-1:exon:25296;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72584310 | 72584543 | 72584310 | ID=Msa0139180-mRNA-1:exon:25297;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72584644 | 72584891 | 72584644 | ID=Msa0139180-mRNA-1:exon:25298;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72584985 | 72585197 | 72584985 | ID=Msa0139180-mRNA-1:exon:25299;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72585273 | 72585365 | 72585273 | ID=Msa0139180-mRNA-1:exon:25300;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72585492 | 72585593 | 72585492 | ID=Msa0139180-mRNA-1:exon:25301;Parent=Msa0139180-mRNA-1 |
| chr1_3 | exon | 72585817 | 72586366 | 72585817 | ID=Msa0139180-mRNA-1:exon:25302;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72579731 | 72579954 | 72579731 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72580010 | 72580076 | 72580010 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72583370 | 72583513 | 72583370 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72584129 | 72584246 | 72584129 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72584310 | 72584543 | 72584310 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72584644 | 72584891 | 72584644 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72584985 | 72585197 | 72584985 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72585273 | 72585365 | 72585273 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72585492 | 72585593 | 72585492 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | CDS | 72585817 | 72586158 | 72585817 | ID=Msa0139180-mRNA-1:cds;Parent=Msa0139180-mRNA-1 |
| chr1_3 | three_prime_UTR | 72586159 | 72586366 | 72586159 | ID=Msa0139180-mRNA-1:three_prime_utr;Parent=Msa0139180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
