Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140490 | XP_003603145.1 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 5.52e-142 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140490 | sp|Q7XC57|MYBS3_ORYSJ | 36.923 | 195 | 90 | 4 | 3 | 176 | 1 | 183 | 3.08e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140490 | G7J7M5 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 2.64e-142 | 406 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0140490 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140490 | Msa0186800 | 0.975279 | 1.156487e-139 | -8.615850e-47 |
| Msa0140490 | Msa0381760 | 0.814478 | 1.509766e-51 | -8.615850e-47 |
| Msa0140490 | Msa1383440 | 0.983760 | 1.241904e-158 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140490 | MtrunA17_Chr3g0135671 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 5.08e-146 | 406 |
| Msa0140490 | MtrunA17_Chr6g0488471 | 42.857 | 182 | 72 | 7 | 3 | 157 | 1 | 177 | 7.94e-33 | 120 |
| Msa0140490 | MtrunA17_Chr4g0055931 | 37.705 | 183 | 88 | 3 | 3 | 162 | 1 | 180 | 4.18e-30 | 113 |
| Msa0140490 | MtrunA17_Chr5g0415191 | 43.421 | 152 | 53 | 5 | 1 | 122 | 1 | 149 | 9.72e-28 | 107 |
| Msa0140490 | MtrunA17_Chr8g0389241 | 41.040 | 173 | 68 | 4 | 5 | 146 | 4 | 173 | 5.94e-27 | 104 |
| Msa0140490 | MtrunA17_Chr2g0331031 | 62.857 | 70 | 23 | 1 | 70 | 139 | 104 | 170 | 2.51e-23 | 95.9 |
| Msa0140490 | MtrunA17_Chr1g0210471 | 62.162 | 74 | 26 | 1 | 61 | 134 | 110 | 181 | 4.40e-23 | 93.2 |
| Msa0140490 | MtrunA17_Chr5g0429521 | 48.039 | 102 | 46 | 2 | 70 | 171 | 127 | 221 | 9.34e-23 | 93.6 |
| Msa0140490 | MtrunA17_Chr5g0436501 | 47.959 | 98 | 41 | 2 | 35 | 128 | 87 | 178 | 3.86e-22 | 91.3 |
| Msa0140490 | MtrunA17_Chr3g0104071 | 54.217 | 83 | 31 | 2 | 70 | 152 | 142 | 217 | 2.11e-21 | 90.1 |
| Msa0140490 | MtrunA17_Chr7g0241761 | 64.062 | 64 | 23 | 0 | 70 | 133 | 135 | 198 | 3.43e-21 | 89.4 |
| Msa0140490 | MtrunA17_Chr4g0062741 | 54.795 | 73 | 30 | 1 | 70 | 142 | 133 | 202 | 9.33e-21 | 88.2 |
| Msa0140490 | MtrunA17_Chr4g0059701 | 69.231 | 52 | 16 | 0 | 70 | 121 | 79 | 130 | 1.17e-20 | 87.8 |
| Msa0140490 | MtrunA17_Chr1g0162081 | 52.381 | 84 | 37 | 2 | 70 | 153 | 117 | 197 | 3.68e-20 | 86.7 |
| Msa0140490 | MtrunA17_Chr5g0409841 | 41.322 | 121 | 60 | 4 | 51 | 163 | 66 | 183 | 4.32e-20 | 85.1 |
| Msa0140490 | MtrunA17_Chr5g0440731 | 52.239 | 67 | 32 | 0 | 74 | 140 | 104 | 170 | 1.99e-19 | 84.3 |
| Msa0140490 | MtrunA17_Chr5g0440741 | 54.688 | 64 | 29 | 0 | 77 | 140 | 102 | 165 | 2.56e-19 | 84.0 |
| Msa0140490 | MtrunA17_Chr6g0452791 | 68.750 | 48 | 15 | 0 | 75 | 122 | 80 | 127 | 5.94e-19 | 80.5 |
| Msa0140490 | MtrunA17_Chr3g0092621 | 59.322 | 59 | 24 | 0 | 75 | 133 | 84 | 142 | 1.44e-18 | 79.7 |
| Msa0140490 | MtrunA17_Chr5g0409831 | 48.684 | 76 | 33 | 2 | 51 | 122 | 51 | 124 | 4.34e-16 | 74.3 |
| Msa0140490 | MtrunA17_Chr1g0192061 | 46.479 | 71 | 37 | 1 | 71 | 141 | 57 | 126 | 4.93e-14 | 67.8 |
| Msa0140490 | MtrunA17_Chr5g0432941 | 47.945 | 73 | 37 | 1 | 52 | 124 | 90 | 161 | 9.19e-13 | 65.1 |
| Msa0140490 | MtrunA17_Chr3g0113121 | 48.571 | 70 | 32 | 1 | 77 | 142 | 97 | 166 | 1.11e-12 | 64.7 |
| Msa0140490 | MtrunA17_Chr5g0432921 | 64.583 | 48 | 16 | 1 | 77 | 124 | 115 | 161 | 1.16e-12 | 64.7 |
| Msa0140490 | MtrunA17_Chr8g0365011 | 42.353 | 85 | 35 | 2 | 72 | 142 | 89 | 173 | 8.61e-12 | 63.2 |
| Msa0140490 | MtrunA17_Chr8g0364731 | 50.769 | 65 | 31 | 1 | 84 | 148 | 10 | 73 | 6.68e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140490 | AT5G56840.1 | 39.013 | 223 | 114 | 5 | 3 | 207 | 1 | 219 | 1.22e-32 | 118 |
| Msa0140490 | AT5G61620.1 | 39.884 | 173 | 73 | 5 | 1 | 145 | 6 | 175 | 3.68e-28 | 108 |
| Msa0140490 | AT5G47390.1 | 33.745 | 243 | 99 | 7 | 3 | 215 | 1 | 211 | 1.55e-27 | 107 |
| Msa0140490 | AT1G70000.1 | 39.310 | 145 | 63 | 3 | 3 | 122 | 1 | 145 | 1.50e-24 | 97.8 |
| Msa0140490 | AT1G70000.2 | 39.310 | 145 | 63 | 3 | 3 | 122 | 1 | 145 | 1.50e-24 | 97.8 |
| Msa0140490 | AT2G38090.1 | 62.500 | 64 | 24 | 0 | 70 | 133 | 136 | 199 | 1.21e-21 | 90.9 |
| Msa0140490 | AT5G58900.1 | 54.545 | 77 | 35 | 0 | 70 | 146 | 136 | 212 | 1.41e-21 | 90.5 |
| Msa0140490 | AT5G01200.1 | 60.938 | 64 | 25 | 0 | 70 | 133 | 141 | 204 | 2.53e-21 | 89.4 |
| Msa0140490 | AT5G04760.1 | 48.421 | 95 | 43 | 2 | 61 | 151 | 85 | 177 | 7.54e-21 | 87.0 |
| Msa0140490 | AT1G49010.1 | 55.263 | 76 | 31 | 2 | 67 | 142 | 126 | 198 | 8.65e-21 | 89.0 |
| Msa0140490 | AT3G16350.1 | 69.811 | 53 | 16 | 0 | 70 | 122 | 132 | 184 | 1.09e-20 | 89.4 |
| Msa0140490 | AT1G74840.2 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.03e-19 | 84.7 |
| Msa0140490 | AT5G08520.1 | 54.795 | 73 | 30 | 2 | 70 | 142 | 113 | 182 | 1.45e-19 | 85.1 |
| Msa0140490 | AT1G74840.1 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.64e-19 | 84.7 |
| Msa0140490 | AT3G11280.2 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.89e-19 | 83.6 |
| Msa0140490 | AT3G11280.1 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.89e-19 | 83.6 |
| Msa0140490 | AT5G05790.2 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.24e-18 | 82.4 |
| Msa0140490 | AT5G05790.1 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.24e-18 | 82.4 |
| Msa0140490 | AT4G09450.1 | 48.837 | 86 | 41 | 2 | 68 | 151 | 84 | 168 | 2.37e-18 | 80.1 |
| Msa0140490 | AT1G19000.2 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.65e-18 | 81.3 |
| Msa0140490 | AT1G19000.1 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.65e-18 | 81.3 |
| Msa0140490 | AT3G10580.2 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 1.52e-17 | 79.0 |
| Msa0140490 | AT3G10580.1 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 2.25e-17 | 79.0 |
| Msa0140490 | AT5G23650.1 | 63.830 | 47 | 17 | 0 | 75 | 121 | 120 | 166 | 2.10e-12 | 65.5 |
| Msa0140490 | AT3G10590.1 | 41.758 | 91 | 52 | 1 | 76 | 165 | 112 | 202 | 2.42e-12 | 63.9 |
Find 48 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCTTGCCTACCATGTT+TGG | 0.292024 | 1_3:-74721448 | Msa0140490:CDS |
| AGAAGCTTGGGAAGGGTAAC+TGG | 0.328316 | 1_3:-74721000 | Msa0140490:CDS |
| CATGCCTCTGTTAGCTCTAA+TGG | 0.334233 | 1_3:+74720537 | None:intergenic |
| CTTCATATTTGCCCACAAAA+AGG | 0.340381 | 1_3:-74721522 | Msa0140490:CDS |
| CTTATGCAGCTGATATCATT+TGG | 0.348494 | 1_3:+74720708 | None:intergenic |
| TTTGTGCATGACTAGCTACC+TGG | 0.362976 | 1_3:+74720936 | None:intergenic |
| TTTGGAGTCAAATTTATTCC+TGG | 0.373119 | 1_3:+74720726 | None:intergenic |
| AATTTCTACTTCCACTTAGT+TGG | 0.375503 | 1_3:+74720685 | None:intergenic |
| TGCTCATATTGTGGAAACTT+TGG | 0.380840 | 1_3:-74721607 | Msa0140490:CDS |
| GAAACTTTGGTCACAATTCA+AGG | 0.408806 | 1_3:-74721594 | Msa0140490:CDS |
| CTCAACATTCAATACTGAAA+TGG | 0.409371 | 1_3:-74720638 | Msa0140490:CDS |
| CTTAGAGGACTTGAGAAGCT+TGG | 0.418302 | 1_3:-74721013 | Msa0140490:CDS |
| TCCGTTGATGTTGAAGAGTT+AGG | 0.422454 | 1_3:+74720615 | None:intergenic |
| TTAGAGGACTTGAGAAGCTT+GGG | 0.428690 | 1_3:-74721012 | Msa0140490:CDS |
| GCAAGTTTGAGTTCTAAATC+AGG | 0.432705 | 1_3:+74720570 | None:intergenic |
| GAGCACATGATATTTCTTAG+AGG | 0.438938 | 1_3:-74721028 | Msa0140490:CDS |
| GATAAAGAGGTCCGCGATGA+TGG | 0.481364 | 1_3:+74721478 | None:intergenic |
| CTCTGTTAGCTCTAATGGCA+TGG | 0.487511 | 1_3:+74720542 | None:intergenic |
| TATAAGAAATGAGAATAGCT+AGG | 0.489637 | 1_3:-74721633 | None:intergenic |
| TTACATAATGGAGGCTAAGA+TGG | 0.500282 | 1_3:+74720864 | None:intergenic |
| AAGAGGTCCGCGATGATGGC+AGG | 0.511716 | 1_3:+74721482 | None:intergenic |
| AAATCAGGTGCTGCACTATG+AGG | 0.523156 | 1_3:+74720585 | None:intergenic |
| TCTGTTAGCTCTAATGGCAT+GGG | 0.534114 | 1_3:+74720543 | None:intergenic |
| TGATCAAGCTATTCTGAGAC+TGG | 0.538315 | 1_3:+74720900 | None:intergenic |
| ACACTACTGGTTAGCTTAAG+GGG | 0.538405 | 1_3:+74720512 | None:intergenic |
| GGAGGAGGCTATTGATAAAG+AGG | 0.539005 | 1_3:+74721465 | None:intergenic |
| GCTAGGAAATGCTCATATTG+TGG | 0.540745 | 1_3:-74721616 | Msa0140490:CDS |
| TTGTGCATGACTAGCTACCT+GGG | 0.547274 | 1_3:+74720937 | None:intergenic |
| TTAATTTACTTACATAATGG+AGG | 0.564586 | 1_3:+74720855 | None:intergenic |
| TCATTTGAACCAAACATGGT+AGG | 0.568762 | 1_3:+74721439 | None:intergenic |
| GGACTTGAGAAGCTTGGGAA+GGG | 0.571874 | 1_3:-74721007 | Msa0140490:CDS |
| ATGTGCTCCTCCTCGGTCCA+CGG | 0.572063 | 1_3:+74721043 | None:intergenic |
| GCCTAACTCTTCAACATCAA+CGG | 0.576928 | 1_3:-74720616 | Msa0140490:CDS |
| CATTTCAGTATTGAATGTTG+AGG | 0.583001 | 1_3:+74720639 | None:intergenic |
| AGCTGCATAAGCCAACTAAG+TGG | 0.584599 | 1_3:-74720696 | Msa0140490:CDS |
| AAATATCATGTGCTCCTCCT+CGG | 0.585344 | 1_3:+74721036 | None:intergenic |
| AGGACTTGAGAAGCTTGGGA+AGG | 0.598172 | 1_3:-74721008 | Msa0140490:CDS |
| TGAACCAAACATGGTAGGCA+AGG | 0.600769 | 1_3:+74721444 | None:intergenic |
| ATCAGGTATGCCGTGGACCG+AGG | 0.606863 | 1_3:-74721053 | Msa0140490:intron |
| GCATGACTAGCTACCTGGGT+TGG | 0.613754 | 1_3:+74720941 | None:intergenic |
| AAACATGGTAGGCAAGGAGG+AGG | 0.626173 | 1_3:+74721450 | None:intergenic |
| CTTGGGAAGGGTAACTGGAG+AGG | 0.645821 | 1_3:-74720995 | Msa0140490:CDS |
| ACCAAACATGGTAGGCAAGG+AGG | 0.664492 | 1_3:+74721447 | None:intergenic |
| AGGTATGCCGTGGACCGAGG+AGG | 0.665092 | 1_3:-74721050 | Msa0140490:CDS |
| TCAAGCTATTCTGAGACTGG+CGG | 0.679211 | 1_3:+74720903 | None:intergenic |
| TGAGGATGAGAAAGCCACTG+AGG | 0.730112 | 1_3:+74720657 | None:intergenic |
| CATGCCATTAGAGCTAACAG+AGG | 0.740508 | 1_3:-74720541 | Msa0140490:CDS |
| AGAACTACCTGCCATCATCG+CGG | 0.745192 | 1_3:-74721489 | Msa0140490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTACTTACATAA+TGG | + | chr1_3:74721303-74721322 | None:intergenic | 10.0% |
| !! | AAATTAAATATAGAATAAGA+TGG | + | chr1_3:74721386-74721405 | None:intergenic | 10.0% |
| !! | ATCTTATTCTATATTTAATT+TGG | - | chr1_3:74721385-74721404 | Msa0140490:intron | 10.0% |
| !!! | ATTTTAATTTACTTACATAA+TGG | + | chr1_3:74721303-74721322 | None:intergenic | 10.0% |
| !! | AAATTAAATATAGAATAAGA+TGG | + | chr1_3:74721386-74721405 | None:intergenic | 10.0% |
| !! | ATCTTATTCTATATTTAATT+TGG | - | chr1_3:74721385-74721404 | Msa0140490:intron | 10.0% |
| !!! | TAATTATAACCTTTTTTACT+GGG | + | chr1_3:74720785-74720804 | None:intergenic | 15.0% |
| !!! | ATAATTATAACCTTTTTTAC+TGG | + | chr1_3:74720786-74720805 | None:intergenic | 15.0% |
| !!! | AATTAAAGAAGTTTAAAGTA+AGG | + | chr1_3:74721359-74721378 | None:intergenic | 15.0% |
| !!! | TAATTATAACCTTTTTTACT+GGG | + | chr1_3:74720785-74720804 | None:intergenic | 15.0% |
| !!! | ATAATTATAACCTTTTTTAC+TGG | + | chr1_3:74720786-74720805 | None:intergenic | 15.0% |
| !!! | AATTAAAGAAGTTTAAAGTA+AGG | + | chr1_3:74721359-74721378 | None:intergenic | 15.0% |
| !! | TTAATTTACTTACATAATGG+AGG | + | chr1_3:74721300-74721319 | None:intergenic | 20.0% |
| !!! | TATTCTATATTTAATTTGGC+AGG | - | chr1_3:74721389-74721408 | Msa0140490:intron | 20.0% |
| !! | TTAATTTACTTACATAATGG+AGG | + | chr1_3:74721300-74721319 | None:intergenic | 20.0% |
| !!! | TATTCTATATTTAATTTGGC+AGG | - | chr1_3:74721389-74721408 | Msa0140490:intron | 20.0% |
| !! | ATTTTCATTTGAACCAAACA+TGG | + | chr1_3:74720720-74720739 | None:intergenic | 25.0% |
| ! | TGAATCCAAAATTCAAAATC+TGG | - | chr1_3:74720864-74720883 | Msa0140490:intron | 25.0% |
| ! | TCCAACTAATGAGAAAATTA+AGG | - | chr1_3:74720904-74720923 | Msa0140490:CDS | 25.0% |
| !! | TCCTTAATTTTCTCATTAGT+TGG | + | chr1_3:74720908-74720927 | None:intergenic | 25.0% |
| !!! | ATGTACATTTTTTTGTGATC+AGG | - | chr1_3:74721082-74721101 | Msa0140490:intron | 25.0% |
| !!! | TGCACGTAACTATTTTTATA+TGG | + | chr1_3:74721332-74721351 | None:intergenic | 25.0% |
| !! | ATTTTCATTTGAACCAAACA+TGG | + | chr1_3:74720720-74720739 | None:intergenic | 25.0% |
| ! | TGAATCCAAAATTCAAAATC+TGG | - | chr1_3:74720864-74720883 | Msa0140490:intron | 25.0% |
| ! | TCCAACTAATGAGAAAATTA+AGG | - | chr1_3:74720904-74720923 | Msa0140490:CDS | 25.0% |
| !! | TCCTTAATTTTCTCATTAGT+TGG | + | chr1_3:74720908-74720927 | None:intergenic | 25.0% |
| !!! | ATGTACATTTTTTTGTGATC+AGG | - | chr1_3:74721082-74721101 | Msa0140490:intron | 25.0% |
| !!! | TGCACGTAACTATTTTTATA+TGG | + | chr1_3:74721332-74721351 | None:intergenic | 25.0% |
| !!! | TTTCTGAAACTCCTTTTTGT+GGG | + | chr1_3:74720644-74720663 | None:intergenic | 30.0% |
| TGATATATGCTCGTTTCTTA+CGG | + | chr1_3:74720753-74720772 | None:intergenic | 30.0% | |
| !! | AGTTTTGTGAGGGTTAAATT+AGG | - | chr1_3:74720840-74720859 | Msa0140490:intron | 30.0% |
| TAGAATTGTGAATTGTTGCT+TGG | - | chr1_3:74721043-74721062 | Msa0140490:CDS | 30.0% | |
| !! | TCTATATTTAATTTGGCAGG+TGG | - | chr1_3:74721392-74721411 | Msa0140490:intron | 30.0% |
| !! | CTATATTTAATTTGGCAGGT+GGG | - | chr1_3:74721393-74721412 | Msa0140490:intron | 30.0% |
| ! | TTTGGAGTCAAATTTATTCC+TGG | + | chr1_3:74721429-74721448 | None:intergenic | 30.0% |
| AATTTCTACTTCCACTTAGT+TGG | + | chr1_3:74721470-74721489 | None:intergenic | 30.0% | |
| ! | CATTTCAGTATTGAATGTTG+AGG | + | chr1_3:74721516-74721535 | None:intergenic | 30.0% |
| CTCAACATTCAATACTGAAA+TGG | - | chr1_3:74721514-74721533 | Msa0140490:CDS | 30.0% | |
| !!! | TTTCTGAAACTCCTTTTTGT+GGG | + | chr1_3:74720644-74720663 | None:intergenic | 30.0% |
| TGATATATGCTCGTTTCTTA+CGG | + | chr1_3:74720753-74720772 | None:intergenic | 30.0% | |
| !! | AGTTTTGTGAGGGTTAAATT+AGG | - | chr1_3:74720840-74720859 | Msa0140490:intron | 30.0% |
| TAGAATTGTGAATTGTTGCT+TGG | - | chr1_3:74721043-74721062 | Msa0140490:CDS | 30.0% | |
| !! | TCTATATTTAATTTGGCAGG+TGG | - | chr1_3:74721392-74721411 | Msa0140490:intron | 30.0% |
| !! | CTATATTTAATTTGGCAGGT+GGG | - | chr1_3:74721393-74721412 | Msa0140490:intron | 30.0% |
| ! | TTTGGAGTCAAATTTATTCC+TGG | + | chr1_3:74721429-74721448 | None:intergenic | 30.0% |
| AATTTCTACTTCCACTTAGT+TGG | + | chr1_3:74721470-74721489 | None:intergenic | 30.0% | |
| ! | CATTTCAGTATTGAATGTTG+AGG | + | chr1_3:74721516-74721535 | None:intergenic | 30.0% |
| CTCAACATTCAATACTGAAA+TGG | - | chr1_3:74721514-74721533 | Msa0140490:CDS | 30.0% | |
| TGCTCATATTGTGGAAACTT+TGG | - | chr1_3:74720545-74720564 | Msa0140490:CDS | 35.0% | |
| GAAACTTTGGTCACAATTCA+AGG | - | chr1_3:74720558-74720577 | Msa0140490:CDS | 35.0% | |
| ! | CTTTTTGTGGGCAAATATGA+AGG | + | chr1_3:74720632-74720651 | None:intergenic | 35.0% |
| CTTCATATTTGCCCACAAAA+AGG | - | chr1_3:74720630-74720649 | Msa0140490:CDS | 35.0% | |
| !!! | CTTTCTGAAACTCCTTTTTG+TGG | + | chr1_3:74720645-74720664 | None:intergenic | 35.0% |
| TCATTTGAACCAAACATGGT+AGG | + | chr1_3:74720716-74720735 | None:intergenic | 35.0% | |
| ACAATCAGACCCAGTAAAAA+AGG | - | chr1_3:74720773-74720792 | Msa0140490:intron | 35.0% | |
| !! | CTTACAGATCAGTTTTGTGA+GGG | - | chr1_3:74720830-74720849 | Msa0140490:intron | 35.0% |
| ! | CTTGGCCAGATTTTGAATTT+TGG | + | chr1_3:74720872-74720891 | None:intergenic | 35.0% |
| GAGCACATGATATTTCTTAG+AGG | - | chr1_3:74721124-74721143 | Msa0140490:intron | 35.0% | |
| ! | TTACATAATGGAGGCTAAGA+TGG | + | chr1_3:74721291-74721310 | None:intergenic | 35.0% |
| CTTATGCAGCTGATATCATT+TGG | + | chr1_3:74721447-74721466 | None:intergenic | 35.0% | |
| ! | GTAGAAATTTTCTTCCTCAG+TGG | - | chr1_3:74721481-74721500 | Msa0140490:CDS | 35.0% |
| !! | GCAAGTTTGAGTTCTAAATC+AGG | + | chr1_3:74721585-74721604 | None:intergenic | 35.0% |
| TGCTCATATTGTGGAAACTT+TGG | - | chr1_3:74720545-74720564 | Msa0140490:CDS | 35.0% | |
| GAAACTTTGGTCACAATTCA+AGG | - | chr1_3:74720558-74720577 | Msa0140490:CDS | 35.0% | |
| ! | CTTTTTGTGGGCAAATATGA+AGG | + | chr1_3:74720632-74720651 | None:intergenic | 35.0% |
| CTTCATATTTGCCCACAAAA+AGG | - | chr1_3:74720630-74720649 | Msa0140490:CDS | 35.0% | |
| !!! | CTTTCTGAAACTCCTTTTTG+TGG | + | chr1_3:74720645-74720664 | None:intergenic | 35.0% |
| TCATTTGAACCAAACATGGT+AGG | + | chr1_3:74720716-74720735 | None:intergenic | 35.0% | |
| ACAATCAGACCCAGTAAAAA+AGG | - | chr1_3:74720773-74720792 | Msa0140490:intron | 35.0% | |
| !! | CTTACAGATCAGTTTTGTGA+GGG | - | chr1_3:74720830-74720849 | Msa0140490:intron | 35.0% |
| ! | CTTGGCCAGATTTTGAATTT+TGG | + | chr1_3:74720872-74720891 | None:intergenic | 35.0% |
| GAGCACATGATATTTCTTAG+AGG | - | chr1_3:74721124-74721143 | Msa0140490:intron | 35.0% | |
| ! | TTACATAATGGAGGCTAAGA+TGG | + | chr1_3:74721291-74721310 | None:intergenic | 35.0% |
| CTTATGCAGCTGATATCATT+TGG | + | chr1_3:74721447-74721466 | None:intergenic | 35.0% | |
| ! | GTAGAAATTTTCTTCCTCAG+TGG | - | chr1_3:74721481-74721500 | Msa0140490:CDS | 35.0% |
| !! | GCAAGTTTGAGTTCTAAATC+AGG | + | chr1_3:74721585-74721604 | None:intergenic | 35.0% |
| GCTAGGAAATGCTCATATTG+TGG | - | chr1_3:74720536-74720555 | Msa0140490:CDS | 40.0% | |
| CCTCACAAAACTGATCTGTA+AGG | + | chr1_3:74720832-74720851 | None:intergenic | 40.0% | |
| !! | CCTTACAGATCAGTTTTGTG+AGG | - | chr1_3:74720829-74720848 | Msa0140490:intron | 40.0% |
| AAATATCATGTGCTCCTCCT+CGG | + | chr1_3:74721119-74721138 | None:intergenic | 40.0% | |
| TTAGAGGACTTGAGAAGCTT+GGG | - | chr1_3:74721140-74721159 | Msa0140490:intron | 40.0% | |
| AACAACAAAAACACCAACCC+AGG | - | chr1_3:74721198-74721217 | Msa0140490:intron | 40.0% | |
| !! | TGATCAAGCTATTCTGAGAC+TGG | + | chr1_3:74721255-74721274 | None:intergenic | 40.0% |
| GCCTAACTCTTCAACATCAA+CGG | - | chr1_3:74721536-74721555 | Msa0140490:CDS | 40.0% | |
| TCCGTTGATGTTGAAGAGTT+AGG | + | chr1_3:74721540-74721559 | None:intergenic | 40.0% | |
| !! | TCTGTTAGCTCTAATGGCAT+GGG | + | chr1_3:74721612-74721631 | None:intergenic | 40.0% |
| GCTAGGAAATGCTCATATTG+TGG | - | chr1_3:74720536-74720555 | Msa0140490:CDS | 40.0% | |
| CCTCACAAAACTGATCTGTA+AGG | + | chr1_3:74720832-74720851 | None:intergenic | 40.0% | |
| !! | CCTTACAGATCAGTTTTGTG+AGG | - | chr1_3:74720829-74720848 | Msa0140490:intron | 40.0% |
| AAATATCATGTGCTCCTCCT+CGG | + | chr1_3:74721119-74721138 | None:intergenic | 40.0% | |
| TTAGAGGACTTGAGAAGCTT+GGG | - | chr1_3:74721140-74721159 | Msa0140490:intron | 40.0% | |
| AACAACAAAAACACCAACCC+AGG | - | chr1_3:74721198-74721217 | Msa0140490:intron | 40.0% | |
| !! | TGATCAAGCTATTCTGAGAC+TGG | + | chr1_3:74721255-74721274 | None:intergenic | 40.0% |
| GCCTAACTCTTCAACATCAA+CGG | - | chr1_3:74721536-74721555 | Msa0140490:CDS | 40.0% | |
| TCCGTTGATGTTGAAGAGTT+AGG | + | chr1_3:74721540-74721559 | None:intergenic | 40.0% | |
| !! | TCTGTTAGCTCTAATGGCAT+GGG | + | chr1_3:74721612-74721631 | None:intergenic | 40.0% |
| GGAGGAGGCTATTGATAAAG+AGG | + | chr1_3:74720690-74720709 | None:intergenic | 45.0% | |
| TGAACCAAACATGGTAGGCA+AGG | + | chr1_3:74720711-74720730 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCACTTCACT+TGG | + | chr1_3:74720890-74720909 | None:intergenic | 45.0% |
| ! | TTTTGTGATCAGGTATGCCG+TGG | - | chr1_3:74721092-74721111 | Msa0140490:intron | 45.0% |
| CTTAGAGGACTTGAGAAGCT+TGG | - | chr1_3:74721139-74721158 | Msa0140490:intron | 45.0% | |
| ! | TTGTGCATGACTAGCTACCT+GGG | + | chr1_3:74721218-74721237 | None:intergenic | 45.0% |
| ! | TTTGTGCATGACTAGCTACC+TGG | + | chr1_3:74721219-74721238 | None:intergenic | 45.0% |
| !! | TCAAGCTATTCTGAGACTGG+CGG | + | chr1_3:74721252-74721271 | None:intergenic | 45.0% |
| AGCTGCATAAGCCAACTAAG+TGG | - | chr1_3:74721456-74721475 | Msa0140490:CDS | 45.0% | |
| ! | AAATCAGGTGCTGCACTATG+AGG | + | chr1_3:74721570-74721589 | None:intergenic | 45.0% |
| !! | CTCTGTTAGCTCTAATGGCA+TGG | + | chr1_3:74721613-74721632 | None:intergenic | 45.0% |
| CATGCCATTAGAGCTAACAG+AGG | - | chr1_3:74721611-74721630 | Msa0140490:CDS | 45.0% | |
| !! | CATGCCTCTGTTAGCTCTAA+TGG | + | chr1_3:74721618-74721637 | None:intergenic | 45.0% |
| GGAGGAGGCTATTGATAAAG+AGG | + | chr1_3:74720690-74720709 | None:intergenic | 45.0% | |
| TGAACCAAACATGGTAGGCA+AGG | + | chr1_3:74720711-74720730 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCACTTCACT+TGG | + | chr1_3:74720890-74720909 | None:intergenic | 45.0% |
| ! | TTTTGTGATCAGGTATGCCG+TGG | - | chr1_3:74721092-74721111 | Msa0140490:intron | 45.0% |
| CTTAGAGGACTTGAGAAGCT+TGG | - | chr1_3:74721139-74721158 | Msa0140490:intron | 45.0% | |
| ! | TTGTGCATGACTAGCTACCT+GGG | + | chr1_3:74721218-74721237 | None:intergenic | 45.0% |
| ! | TTTGTGCATGACTAGCTACC+TGG | + | chr1_3:74721219-74721238 | None:intergenic | 45.0% |
| !! | TCAAGCTATTCTGAGACTGG+CGG | + | chr1_3:74721252-74721271 | None:intergenic | 45.0% |
| AGCTGCATAAGCCAACTAAG+TGG | - | chr1_3:74721456-74721475 | Msa0140490:CDS | 45.0% | |
| ! | AAATCAGGTGCTGCACTATG+AGG | + | chr1_3:74721570-74721589 | None:intergenic | 45.0% |
| !! | CTCTGTTAGCTCTAATGGCA+TGG | + | chr1_3:74721613-74721632 | None:intergenic | 45.0% |
| CATGCCATTAGAGCTAACAG+AGG | - | chr1_3:74721611-74721630 | Msa0140490:CDS | 45.0% | |
| !! | CATGCCTCTGTTAGCTCTAA+TGG | + | chr1_3:74721618-74721637 | None:intergenic | 45.0% |
| AGAACTACCTGCCATCATCG+CGG | - | chr1_3:74720663-74720682 | Msa0140490:CDS | 50.0% | |
| GATAAAGAGGTCCGCGATGA+TGG | + | chr1_3:74720677-74720696 | None:intergenic | 50.0% | |
| AAACATGGTAGGCAAGGAGG+AGG | + | chr1_3:74720705-74720724 | None:intergenic | 50.0% | |
| TCCTCCTTGCCTACCATGTT+TGG | - | chr1_3:74720704-74720723 | Msa0140490:CDS | 50.0% | |
| ACCAAACATGGTAGGCAAGG+AGG | + | chr1_3:74720708-74720727 | None:intergenic | 50.0% | |
| AGGACTTGAGAAGCTTGGGA+AGG | - | chr1_3:74721144-74721163 | Msa0140490:intron | 50.0% | |
| GGACTTGAGAAGCTTGGGAA+GGG | - | chr1_3:74721145-74721164 | Msa0140490:intron | 50.0% | |
| AGAAGCTTGGGAAGGGTAAC+TGG | - | chr1_3:74721152-74721171 | Msa0140490:intron | 50.0% | |
| CAGGTGGGATGTGAAAAACC+AGG | - | chr1_3:74721408-74721427 | Msa0140490:intron | 50.0% | |
| TGAGGATGAGAAAGCCACTG+AGG | + | chr1_3:74721498-74721517 | None:intergenic | 50.0% | |
| AGAACTACCTGCCATCATCG+CGG | - | chr1_3:74720663-74720682 | Msa0140490:CDS | 50.0% | |
| GATAAAGAGGTCCGCGATGA+TGG | + | chr1_3:74720677-74720696 | None:intergenic | 50.0% | |
| AAACATGGTAGGCAAGGAGG+AGG | + | chr1_3:74720705-74720724 | None:intergenic | 50.0% | |
| TCCTCCTTGCCTACCATGTT+TGG | - | chr1_3:74720704-74720723 | Msa0140490:CDS | 50.0% | |
| ACCAAACATGGTAGGCAAGG+AGG | + | chr1_3:74720708-74720727 | None:intergenic | 50.0% | |
| AGGACTTGAGAAGCTTGGGA+AGG | - | chr1_3:74721144-74721163 | Msa0140490:intron | 50.0% | |
| GGACTTGAGAAGCTTGGGAA+GGG | - | chr1_3:74721145-74721164 | Msa0140490:intron | 50.0% | |
| AGAAGCTTGGGAAGGGTAAC+TGG | - | chr1_3:74721152-74721171 | Msa0140490:intron | 50.0% | |
| CAGGTGGGATGTGAAAAACC+AGG | - | chr1_3:74721408-74721427 | Msa0140490:intron | 50.0% | |
| TGAGGATGAGAAAGCCACTG+AGG | + | chr1_3:74721498-74721517 | None:intergenic | 50.0% | |
| CTTGGGAAGGGTAACTGGAG+AGG | - | chr1_3:74721157-74721176 | Msa0140490:intron | 55.0% | |
| ! | GCATGACTAGCTACCTGGGT+TGG | + | chr1_3:74721214-74721233 | None:intergenic | 55.0% |
| CTTGGGAAGGGTAACTGGAG+AGG | - | chr1_3:74721157-74721176 | Msa0140490:intron | 55.0% | |
| ! | GCATGACTAGCTACCTGGGT+TGG | + | chr1_3:74721214-74721233 | None:intergenic | 55.0% |
| ! | AAGAGGTCCGCGATGATGGC+AGG | + | chr1_3:74720673-74720692 | None:intergenic | 60.0% |
| ATCAGGTATGCCGTGGACCG+AGG | - | chr1_3:74721099-74721118 | Msa0140490:intron | 60.0% | |
| ATGTGCTCCTCCTCGGTCCA+CGG | + | chr1_3:74721112-74721131 | None:intergenic | 60.0% | |
| ! | AAGAGGTCCGCGATGATGGC+AGG | + | chr1_3:74720673-74720692 | None:intergenic | 60.0% |
| ATCAGGTATGCCGTGGACCG+AGG | - | chr1_3:74721099-74721118 | Msa0140490:intron | 60.0% | |
| ATGTGCTCCTCCTCGGTCCA+CGG | + | chr1_3:74721112-74721131 | None:intergenic | 60.0% | |
| AGGTATGCCGTGGACCGAGG+AGG | - | chr1_3:74721102-74721121 | Msa0140490:intron | 65.0% | |
| AGGTATGCCGTGGACCGAGG+AGG | - | chr1_3:74721102-74721121 | Msa0140490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 74720527 | 74721647 | 74720527 | ID=Msa0140490;Name=Msa0140490 |
| chr1_3 | mRNA | 74720527 | 74721647 | 74720527 | ID=Msa0140490-mRNA-1;Parent=Msa0140490;Name=Msa0140490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|219 |
| chr1_3 | exon | 74721428 | 74721647 | 74721428 | ID=Msa0140490-mRNA-1:exon:26096;Parent=Msa0140490-mRNA-1 |
| chr1_3 | exon | 74720868 | 74721070 | 74720868 | ID=Msa0140490-mRNA-1:exon:26095;Parent=Msa0140490-mRNA-1 |
| chr1_3 | exon | 74720527 | 74720763 | 74720527 | ID=Msa0140490-mRNA-1:exon:26094;Parent=Msa0140490-mRNA-1 |
| chr1_3 | CDS | 74721428 | 74721647 | 74721428 | ID=Msa0140490-mRNA-1:cds;Parent=Msa0140490-mRNA-1 |
| chr1_3 | CDS | 74720868 | 74721070 | 74720868 | ID=Msa0140490-mRNA-1:cds;Parent=Msa0140490-mRNA-1 |
| chr1_3 | CDS | 74720527 | 74720763 | 74720527 | ID=Msa0140490-mRNA-1:cds;Parent=Msa0140490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
