Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383440 | XP_003603145.1 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 5.52e-142 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383440 | sp|Q7XC57|MYBS3_ORYSJ | 36.923 | 195 | 90 | 4 | 3 | 176 | 1 | 183 | 3.08e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383440 | G7J7M5 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 2.64e-142 | 406 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1383440 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140490 | Msa1383440 | 0.983760 | 1.241904e-158 | -8.615850e-47 |
| Msa0186800 | Msa1383440 | 0.964789 | 9.021466e-124 | -8.615850e-47 |
| Msa0381760 | Msa1383440 | 0.821897 | 3.162214e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383440 | MtrunA17_Chr3g0135671 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 5.08e-146 | 406 |
| Msa1383440 | MtrunA17_Chr6g0488471 | 42.857 | 182 | 72 | 7 | 3 | 157 | 1 | 177 | 7.94e-33 | 120 |
| Msa1383440 | MtrunA17_Chr4g0055931 | 37.705 | 183 | 88 | 3 | 3 | 162 | 1 | 180 | 4.18e-30 | 113 |
| Msa1383440 | MtrunA17_Chr5g0415191 | 43.421 | 152 | 53 | 5 | 1 | 122 | 1 | 149 | 9.72e-28 | 107 |
| Msa1383440 | MtrunA17_Chr8g0389241 | 41.040 | 173 | 68 | 4 | 5 | 146 | 4 | 173 | 5.94e-27 | 104 |
| Msa1383440 | MtrunA17_Chr2g0331031 | 62.857 | 70 | 23 | 1 | 70 | 139 | 104 | 170 | 2.51e-23 | 95.9 |
| Msa1383440 | MtrunA17_Chr1g0210471 | 62.162 | 74 | 26 | 1 | 61 | 134 | 110 | 181 | 4.40e-23 | 93.2 |
| Msa1383440 | MtrunA17_Chr5g0429521 | 48.039 | 102 | 46 | 2 | 70 | 171 | 127 | 221 | 9.34e-23 | 93.6 |
| Msa1383440 | MtrunA17_Chr5g0436501 | 47.959 | 98 | 41 | 2 | 35 | 128 | 87 | 178 | 3.86e-22 | 91.3 |
| Msa1383440 | MtrunA17_Chr3g0104071 | 54.217 | 83 | 31 | 2 | 70 | 152 | 142 | 217 | 2.11e-21 | 90.1 |
| Msa1383440 | MtrunA17_Chr7g0241761 | 64.062 | 64 | 23 | 0 | 70 | 133 | 135 | 198 | 3.43e-21 | 89.4 |
| Msa1383440 | MtrunA17_Chr4g0062741 | 54.795 | 73 | 30 | 1 | 70 | 142 | 133 | 202 | 9.33e-21 | 88.2 |
| Msa1383440 | MtrunA17_Chr4g0059701 | 69.231 | 52 | 16 | 0 | 70 | 121 | 79 | 130 | 1.17e-20 | 87.8 |
| Msa1383440 | MtrunA17_Chr1g0162081 | 52.381 | 84 | 37 | 2 | 70 | 153 | 117 | 197 | 3.68e-20 | 86.7 |
| Msa1383440 | MtrunA17_Chr5g0409841 | 41.322 | 121 | 60 | 4 | 51 | 163 | 66 | 183 | 4.32e-20 | 85.1 |
| Msa1383440 | MtrunA17_Chr5g0440731 | 52.239 | 67 | 32 | 0 | 74 | 140 | 104 | 170 | 1.99e-19 | 84.3 |
| Msa1383440 | MtrunA17_Chr5g0440741 | 54.688 | 64 | 29 | 0 | 77 | 140 | 102 | 165 | 2.56e-19 | 84.0 |
| Msa1383440 | MtrunA17_Chr6g0452791 | 68.750 | 48 | 15 | 0 | 75 | 122 | 80 | 127 | 5.94e-19 | 80.5 |
| Msa1383440 | MtrunA17_Chr3g0092621 | 59.322 | 59 | 24 | 0 | 75 | 133 | 84 | 142 | 1.44e-18 | 79.7 |
| Msa1383440 | MtrunA17_Chr5g0409831 | 48.684 | 76 | 33 | 2 | 51 | 122 | 51 | 124 | 4.34e-16 | 74.3 |
| Msa1383440 | MtrunA17_Chr1g0192061 | 46.479 | 71 | 37 | 1 | 71 | 141 | 57 | 126 | 4.93e-14 | 67.8 |
| Msa1383440 | MtrunA17_Chr5g0432941 | 47.945 | 73 | 37 | 1 | 52 | 124 | 90 | 161 | 9.19e-13 | 65.1 |
| Msa1383440 | MtrunA17_Chr3g0113121 | 48.571 | 70 | 32 | 1 | 77 | 142 | 97 | 166 | 1.11e-12 | 64.7 |
| Msa1383440 | MtrunA17_Chr5g0432921 | 64.583 | 48 | 16 | 1 | 77 | 124 | 115 | 161 | 1.16e-12 | 64.7 |
| Msa1383440 | MtrunA17_Chr8g0365011 | 42.353 | 85 | 35 | 2 | 72 | 142 | 89 | 173 | 8.61e-12 | 63.2 |
| Msa1383440 | MtrunA17_Chr8g0364731 | 50.769 | 65 | 31 | 1 | 84 | 148 | 10 | 73 | 6.68e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383440 | AT5G56840.1 | 39.013 | 223 | 114 | 5 | 3 | 207 | 1 | 219 | 1.22e-32 | 118 |
| Msa1383440 | AT5G61620.1 | 39.884 | 173 | 73 | 5 | 1 | 145 | 6 | 175 | 3.68e-28 | 108 |
| Msa1383440 | AT5G47390.1 | 33.745 | 243 | 99 | 7 | 3 | 215 | 1 | 211 | 1.55e-27 | 107 |
| Msa1383440 | AT1G70000.1 | 39.310 | 145 | 63 | 3 | 3 | 122 | 1 | 145 | 1.50e-24 | 97.8 |
| Msa1383440 | AT1G70000.2 | 39.310 | 145 | 63 | 3 | 3 | 122 | 1 | 145 | 1.50e-24 | 97.8 |
| Msa1383440 | AT2G38090.1 | 62.500 | 64 | 24 | 0 | 70 | 133 | 136 | 199 | 1.21e-21 | 90.9 |
| Msa1383440 | AT5G58900.1 | 54.545 | 77 | 35 | 0 | 70 | 146 | 136 | 212 | 1.41e-21 | 90.5 |
| Msa1383440 | AT5G01200.1 | 60.938 | 64 | 25 | 0 | 70 | 133 | 141 | 204 | 2.53e-21 | 89.4 |
| Msa1383440 | AT5G04760.1 | 48.421 | 95 | 43 | 2 | 61 | 151 | 85 | 177 | 7.54e-21 | 87.0 |
| Msa1383440 | AT1G49010.1 | 55.263 | 76 | 31 | 2 | 67 | 142 | 126 | 198 | 8.65e-21 | 89.0 |
| Msa1383440 | AT3G16350.1 | 69.811 | 53 | 16 | 0 | 70 | 122 | 132 | 184 | 1.09e-20 | 89.4 |
| Msa1383440 | AT1G74840.2 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.03e-19 | 84.7 |
| Msa1383440 | AT5G08520.1 | 54.795 | 73 | 30 | 2 | 70 | 142 | 113 | 182 | 1.45e-19 | 85.1 |
| Msa1383440 | AT1G74840.1 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.64e-19 | 84.7 |
| Msa1383440 | AT3G11280.2 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.89e-19 | 83.6 |
| Msa1383440 | AT3G11280.1 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.89e-19 | 83.6 |
| Msa1383440 | AT5G05790.2 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.24e-18 | 82.4 |
| Msa1383440 | AT5G05790.1 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.24e-18 | 82.4 |
| Msa1383440 | AT4G09450.1 | 48.837 | 86 | 41 | 2 | 68 | 151 | 84 | 168 | 2.37e-18 | 80.1 |
| Msa1383440 | AT1G19000.2 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.65e-18 | 81.3 |
| Msa1383440 | AT1G19000.1 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.65e-18 | 81.3 |
| Msa1383440 | AT3G10580.2 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 1.52e-17 | 79.0 |
| Msa1383440 | AT3G10580.1 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 2.25e-17 | 79.0 |
| Msa1383440 | AT5G23650.1 | 63.830 | 47 | 17 | 0 | 75 | 121 | 120 | 166 | 2.10e-12 | 65.5 |
| Msa1383440 | AT3G10590.1 | 41.758 | 91 | 52 | 1 | 76 | 165 | 112 | 202 | 2.42e-12 | 63.9 |
Find 48 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCTTGCCTACCATGTT+TGG | 0.292024 | tig0020594:-133043 | Msa1383440:CDS |
| AGAAGCTTGGGAAGGGTAAC+TGG | 0.328316 | tig0020594:-132595 | Msa1383440:CDS |
| CATGCCTCTGTTAGCTCTAA+TGG | 0.334233 | tig0020594:+132132 | None:intergenic |
| CTTCATATTTGCCCACAAAA+AGG | 0.340381 | tig0020594:-133117 | Msa1383440:CDS |
| CTTATGCAGCTGATATCATT+TGG | 0.348494 | tig0020594:+132303 | None:intergenic |
| TTTGTGCATGACTAGCTACC+TGG | 0.362976 | tig0020594:+132531 | None:intergenic |
| TTTGGAGTCAAATTTATTCC+TGG | 0.373119 | tig0020594:+132321 | None:intergenic |
| AATTTCTACTTCCACTTAGT+TGG | 0.375503 | tig0020594:+132280 | None:intergenic |
| TGCTCATATTGTGGAAACTT+TGG | 0.380840 | tig0020594:-133202 | Msa1383440:CDS |
| GAAACTTTGGTCACAATTCA+AGG | 0.408806 | tig0020594:-133189 | Msa1383440:CDS |
| CTCAACATTCAATACTGAAA+TGG | 0.409371 | tig0020594:-132233 | Msa1383440:CDS |
| CTTAGAGGACTTGAGAAGCT+TGG | 0.418302 | tig0020594:-132608 | Msa1383440:CDS |
| TCCGTTGATGTTGAAGAGTT+AGG | 0.422454 | tig0020594:+132210 | None:intergenic |
| TTAGAGGACTTGAGAAGCTT+GGG | 0.428690 | tig0020594:-132607 | Msa1383440:CDS |
| GCAAGTTTGAGTTCTAAATC+AGG | 0.432705 | tig0020594:+132165 | None:intergenic |
| GAGCACATGATATTTCTTAG+AGG | 0.438938 | tig0020594:-132623 | Msa1383440:CDS |
| GATAAAGAGGTCCGCGATGA+TGG | 0.481364 | tig0020594:+133073 | None:intergenic |
| CTCTGTTAGCTCTAATGGCA+TGG | 0.487511 | tig0020594:+132137 | None:intergenic |
| TATAAGAAATGAGAATAGCT+AGG | 0.489637 | tig0020594:-133228 | None:intergenic |
| TTACATAATGGAGGCTAAGA+TGG | 0.500282 | tig0020594:+132459 | None:intergenic |
| AAGAGGTCCGCGATGATGGC+AGG | 0.511716 | tig0020594:+133077 | None:intergenic |
| AAATCAGGTGCTGCACTATG+AGG | 0.523156 | tig0020594:+132180 | None:intergenic |
| TCTGTTAGCTCTAATGGCAT+GGG | 0.534114 | tig0020594:+132138 | None:intergenic |
| TGATCAAGCTATTCTGAGAC+TGG | 0.538315 | tig0020594:+132495 | None:intergenic |
| ACACTACTGGTTAGCTTAAG+GGG | 0.538405 | tig0020594:+132107 | None:intergenic |
| GGAGGAGGCTATTGATAAAG+AGG | 0.539005 | tig0020594:+133060 | None:intergenic |
| GCTAGGAAATGCTCATATTG+TGG | 0.540745 | tig0020594:-133211 | Msa1383440:CDS |
| TTGTGCATGACTAGCTACCT+GGG | 0.547274 | tig0020594:+132532 | None:intergenic |
| TTAATTTACTTACATAATGG+AGG | 0.564586 | tig0020594:+132450 | None:intergenic |
| TCATTTGAACCAAACATGGT+AGG | 0.568762 | tig0020594:+133034 | None:intergenic |
| GGACTTGAGAAGCTTGGGAA+GGG | 0.571874 | tig0020594:-132602 | Msa1383440:CDS |
| ATGTGCTCCTCCTCGGTCCA+CGG | 0.572063 | tig0020594:+132638 | None:intergenic |
| GCCTAACTCTTCAACATCAA+CGG | 0.576928 | tig0020594:-132211 | Msa1383440:CDS |
| CATTTCAGTATTGAATGTTG+AGG | 0.583001 | tig0020594:+132234 | None:intergenic |
| AGCTGCATAAGCCAACTAAG+TGG | 0.584599 | tig0020594:-132291 | Msa1383440:CDS |
| AAATATCATGTGCTCCTCCT+CGG | 0.585344 | tig0020594:+132631 | None:intergenic |
| AGGACTTGAGAAGCTTGGGA+AGG | 0.598172 | tig0020594:-132603 | Msa1383440:CDS |
| TGAACCAAACATGGTAGGCA+AGG | 0.600769 | tig0020594:+133039 | None:intergenic |
| ATCAGGTATGCCGTGGACCG+AGG | 0.606863 | tig0020594:-132648 | Msa1383440:intron |
| GCATGACTAGCTACCTGGGT+TGG | 0.613754 | tig0020594:+132536 | None:intergenic |
| AAACATGGTAGGCAAGGAGG+AGG | 0.626173 | tig0020594:+133045 | None:intergenic |
| CTTGGGAAGGGTAACTGGAG+AGG | 0.645821 | tig0020594:-132590 | Msa1383440:CDS |
| ACCAAACATGGTAGGCAAGG+AGG | 0.664492 | tig0020594:+133042 | None:intergenic |
| AGGTATGCCGTGGACCGAGG+AGG | 0.665092 | tig0020594:-132645 | Msa1383440:CDS |
| TCAAGCTATTCTGAGACTGG+CGG | 0.679211 | tig0020594:+132498 | None:intergenic |
| TGAGGATGAGAAAGCCACTG+AGG | 0.730112 | tig0020594:+132252 | None:intergenic |
| CATGCCATTAGAGCTAACAG+AGG | 0.740508 | tig0020594:-132136 | Msa1383440:CDS |
| AGAACTACCTGCCATCATCG+CGG | 0.745192 | tig0020594:-133084 | Msa1383440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTACTTACATAA+TGG | + | tig0020594:132898-132917 | None:intergenic | 10.0% |
| !! | AAATTAAATATAGAATAAGA+TGG | + | tig0020594:132981-133000 | None:intergenic | 10.0% |
| !! | ATCTTATTCTATATTTAATT+TGG | - | tig0020594:132980-132999 | Msa1383440:intron | 10.0% |
| !!! | ATTTTAATTTACTTACATAA+TGG | + | tig0020594:132898-132917 | None:intergenic | 10.0% |
| !! | AAATTAAATATAGAATAAGA+TGG | + | tig0020594:132981-133000 | None:intergenic | 10.0% |
| !! | ATCTTATTCTATATTTAATT+TGG | - | tig0020594:132980-132999 | Msa1383440:intron | 10.0% |
| !!! | TAATTATAACCTTTTTTACT+GGG | + | tig0020594:132380-132399 | None:intergenic | 15.0% |
| !!! | ATAATTATAACCTTTTTTAC+TGG | + | tig0020594:132381-132400 | None:intergenic | 15.0% |
| !!! | AATTAAAGAAGTTTAAAGTA+AGG | + | tig0020594:132954-132973 | None:intergenic | 15.0% |
| !!! | TAATTATAACCTTTTTTACT+GGG | + | tig0020594:132380-132399 | None:intergenic | 15.0% |
| !!! | ATAATTATAACCTTTTTTAC+TGG | + | tig0020594:132381-132400 | None:intergenic | 15.0% |
| !!! | AATTAAAGAAGTTTAAAGTA+AGG | + | tig0020594:132954-132973 | None:intergenic | 15.0% |
| !! | TTAATTTACTTACATAATGG+AGG | + | tig0020594:132895-132914 | None:intergenic | 20.0% |
| !!! | TATTCTATATTTAATTTGGC+AGG | - | tig0020594:132984-133003 | Msa1383440:intron | 20.0% |
| !! | TTAATTTACTTACATAATGG+AGG | + | tig0020594:132895-132914 | None:intergenic | 20.0% |
| !!! | TATTCTATATTTAATTTGGC+AGG | - | tig0020594:132984-133003 | Msa1383440:intron | 20.0% |
| !! | ATTTTCATTTGAACCAAACA+TGG | + | tig0020594:132315-132334 | None:intergenic | 25.0% |
| ! | TGAATCCAAAATTCAAAATC+TGG | - | tig0020594:132459-132478 | Msa1383440:intron | 25.0% |
| ! | TCCAACTAATGAGAAAATTA+AGG | - | tig0020594:132499-132518 | Msa1383440:CDS | 25.0% |
| !! | TCCTTAATTTTCTCATTAGT+TGG | + | tig0020594:132503-132522 | None:intergenic | 25.0% |
| !!! | ATGTACATTTTTTTGTGATC+AGG | - | tig0020594:132677-132696 | Msa1383440:intron | 25.0% |
| !!! | TGCACGTAACTATTTTTATA+TGG | + | tig0020594:132927-132946 | None:intergenic | 25.0% |
| !! | ATTTTCATTTGAACCAAACA+TGG | + | tig0020594:132315-132334 | None:intergenic | 25.0% |
| ! | TGAATCCAAAATTCAAAATC+TGG | - | tig0020594:132459-132478 | Msa1383440:intron | 25.0% |
| ! | TCCAACTAATGAGAAAATTA+AGG | - | tig0020594:132499-132518 | Msa1383440:CDS | 25.0% |
| !! | TCCTTAATTTTCTCATTAGT+TGG | + | tig0020594:132503-132522 | None:intergenic | 25.0% |
| !!! | ATGTACATTTTTTTGTGATC+AGG | - | tig0020594:132677-132696 | Msa1383440:intron | 25.0% |
| !!! | TGCACGTAACTATTTTTATA+TGG | + | tig0020594:132927-132946 | None:intergenic | 25.0% |
| !!! | TTTCTGAAACTCCTTTTTGT+GGG | + | tig0020594:132239-132258 | None:intergenic | 30.0% |
| TGATATATGCTCGTTTCTTA+CGG | + | tig0020594:132348-132367 | None:intergenic | 30.0% | |
| !! | AGTTTTGTGAGGGTTAAATT+AGG | - | tig0020594:132435-132454 | Msa1383440:intron | 30.0% |
| TAGAATTGTGAATTGTTGCT+TGG | - | tig0020594:132638-132657 | Msa1383440:CDS | 30.0% | |
| !! | TCTATATTTAATTTGGCAGG+TGG | - | tig0020594:132987-133006 | Msa1383440:intron | 30.0% |
| !! | CTATATTTAATTTGGCAGGT+GGG | - | tig0020594:132988-133007 | Msa1383440:intron | 30.0% |
| ! | TTTGGAGTCAAATTTATTCC+TGG | + | tig0020594:133024-133043 | None:intergenic | 30.0% |
| AATTTCTACTTCCACTTAGT+TGG | + | tig0020594:133065-133084 | None:intergenic | 30.0% | |
| ! | CATTTCAGTATTGAATGTTG+AGG | + | tig0020594:133111-133130 | None:intergenic | 30.0% |
| CTCAACATTCAATACTGAAA+TGG | - | tig0020594:133109-133128 | Msa1383440:CDS | 30.0% | |
| !!! | TTTCTGAAACTCCTTTTTGT+GGG | + | tig0020594:132239-132258 | None:intergenic | 30.0% |
| TGATATATGCTCGTTTCTTA+CGG | + | tig0020594:132348-132367 | None:intergenic | 30.0% | |
| !! | AGTTTTGTGAGGGTTAAATT+AGG | - | tig0020594:132435-132454 | Msa1383440:intron | 30.0% |
| TAGAATTGTGAATTGTTGCT+TGG | - | tig0020594:132638-132657 | Msa1383440:CDS | 30.0% | |
| !! | TCTATATTTAATTTGGCAGG+TGG | - | tig0020594:132987-133006 | Msa1383440:intron | 30.0% |
| !! | CTATATTTAATTTGGCAGGT+GGG | - | tig0020594:132988-133007 | Msa1383440:intron | 30.0% |
| ! | TTTGGAGTCAAATTTATTCC+TGG | + | tig0020594:133024-133043 | None:intergenic | 30.0% |
| AATTTCTACTTCCACTTAGT+TGG | + | tig0020594:133065-133084 | None:intergenic | 30.0% | |
| ! | CATTTCAGTATTGAATGTTG+AGG | + | tig0020594:133111-133130 | None:intergenic | 30.0% |
| CTCAACATTCAATACTGAAA+TGG | - | tig0020594:133109-133128 | Msa1383440:CDS | 30.0% | |
| TGCTCATATTGTGGAAACTT+TGG | - | tig0020594:132140-132159 | Msa1383440:CDS | 35.0% | |
| GAAACTTTGGTCACAATTCA+AGG | - | tig0020594:132153-132172 | Msa1383440:CDS | 35.0% | |
| ! | CTTTTTGTGGGCAAATATGA+AGG | + | tig0020594:132227-132246 | None:intergenic | 35.0% |
| CTTCATATTTGCCCACAAAA+AGG | - | tig0020594:132225-132244 | Msa1383440:CDS | 35.0% | |
| !!! | CTTTCTGAAACTCCTTTTTG+TGG | + | tig0020594:132240-132259 | None:intergenic | 35.0% |
| TCATTTGAACCAAACATGGT+AGG | + | tig0020594:132311-132330 | None:intergenic | 35.0% | |
| ACAATCAGACCCAGTAAAAA+AGG | - | tig0020594:132368-132387 | Msa1383440:intron | 35.0% | |
| !! | CTTACAGATCAGTTTTGTGA+GGG | - | tig0020594:132425-132444 | Msa1383440:intron | 35.0% |
| ! | CTTGGCCAGATTTTGAATTT+TGG | + | tig0020594:132467-132486 | None:intergenic | 35.0% |
| GAGCACATGATATTTCTTAG+AGG | - | tig0020594:132719-132738 | Msa1383440:intron | 35.0% | |
| ! | TTACATAATGGAGGCTAAGA+TGG | + | tig0020594:132886-132905 | None:intergenic | 35.0% |
| CTTATGCAGCTGATATCATT+TGG | + | tig0020594:133042-133061 | None:intergenic | 35.0% | |
| ! | GTAGAAATTTTCTTCCTCAG+TGG | - | tig0020594:133076-133095 | Msa1383440:CDS | 35.0% |
| !! | GCAAGTTTGAGTTCTAAATC+AGG | + | tig0020594:133180-133199 | None:intergenic | 35.0% |
| TGCTCATATTGTGGAAACTT+TGG | - | tig0020594:132140-132159 | Msa1383440:CDS | 35.0% | |
| GAAACTTTGGTCACAATTCA+AGG | - | tig0020594:132153-132172 | Msa1383440:CDS | 35.0% | |
| ! | CTTTTTGTGGGCAAATATGA+AGG | + | tig0020594:132227-132246 | None:intergenic | 35.0% |
| CTTCATATTTGCCCACAAAA+AGG | - | tig0020594:132225-132244 | Msa1383440:CDS | 35.0% | |
| !!! | CTTTCTGAAACTCCTTTTTG+TGG | + | tig0020594:132240-132259 | None:intergenic | 35.0% |
| TCATTTGAACCAAACATGGT+AGG | + | tig0020594:132311-132330 | None:intergenic | 35.0% | |
| ACAATCAGACCCAGTAAAAA+AGG | - | tig0020594:132368-132387 | Msa1383440:intron | 35.0% | |
| !! | CTTACAGATCAGTTTTGTGA+GGG | - | tig0020594:132425-132444 | Msa1383440:intron | 35.0% |
| ! | CTTGGCCAGATTTTGAATTT+TGG | + | tig0020594:132467-132486 | None:intergenic | 35.0% |
| GAGCACATGATATTTCTTAG+AGG | - | tig0020594:132719-132738 | Msa1383440:intron | 35.0% | |
| ! | TTACATAATGGAGGCTAAGA+TGG | + | tig0020594:132886-132905 | None:intergenic | 35.0% |
| CTTATGCAGCTGATATCATT+TGG | + | tig0020594:133042-133061 | None:intergenic | 35.0% | |
| ! | GTAGAAATTTTCTTCCTCAG+TGG | - | tig0020594:133076-133095 | Msa1383440:CDS | 35.0% |
| !! | GCAAGTTTGAGTTCTAAATC+AGG | + | tig0020594:133180-133199 | None:intergenic | 35.0% |
| GCTAGGAAATGCTCATATTG+TGG | - | tig0020594:132131-132150 | Msa1383440:CDS | 40.0% | |
| CCTCACAAAACTGATCTGTA+AGG | + | tig0020594:132427-132446 | None:intergenic | 40.0% | |
| !! | CCTTACAGATCAGTTTTGTG+AGG | - | tig0020594:132424-132443 | Msa1383440:intron | 40.0% |
| AAATATCATGTGCTCCTCCT+CGG | + | tig0020594:132714-132733 | None:intergenic | 40.0% | |
| TTAGAGGACTTGAGAAGCTT+GGG | - | tig0020594:132735-132754 | Msa1383440:intron | 40.0% | |
| AACAACAAAAACACCAACCC+AGG | - | tig0020594:132793-132812 | Msa1383440:intron | 40.0% | |
| !! | TGATCAAGCTATTCTGAGAC+TGG | + | tig0020594:132850-132869 | None:intergenic | 40.0% |
| GCCTAACTCTTCAACATCAA+CGG | - | tig0020594:133131-133150 | Msa1383440:CDS | 40.0% | |
| TCCGTTGATGTTGAAGAGTT+AGG | + | tig0020594:133135-133154 | None:intergenic | 40.0% | |
| !! | TCTGTTAGCTCTAATGGCAT+GGG | + | tig0020594:133207-133226 | None:intergenic | 40.0% |
| GCTAGGAAATGCTCATATTG+TGG | - | tig0020594:132131-132150 | Msa1383440:CDS | 40.0% | |
| CCTCACAAAACTGATCTGTA+AGG | + | tig0020594:132427-132446 | None:intergenic | 40.0% | |
| !! | CCTTACAGATCAGTTTTGTG+AGG | - | tig0020594:132424-132443 | Msa1383440:intron | 40.0% |
| AAATATCATGTGCTCCTCCT+CGG | + | tig0020594:132714-132733 | None:intergenic | 40.0% | |
| TTAGAGGACTTGAGAAGCTT+GGG | - | tig0020594:132735-132754 | Msa1383440:intron | 40.0% | |
| AACAACAAAAACACCAACCC+AGG | - | tig0020594:132793-132812 | Msa1383440:intron | 40.0% | |
| !! | TGATCAAGCTATTCTGAGAC+TGG | + | tig0020594:132850-132869 | None:intergenic | 40.0% |
| GCCTAACTCTTCAACATCAA+CGG | - | tig0020594:133131-133150 | Msa1383440:CDS | 40.0% | |
| TCCGTTGATGTTGAAGAGTT+AGG | + | tig0020594:133135-133154 | None:intergenic | 40.0% | |
| !! | TCTGTTAGCTCTAATGGCAT+GGG | + | tig0020594:133207-133226 | None:intergenic | 40.0% |
| GGAGGAGGCTATTGATAAAG+AGG | + | tig0020594:132285-132304 | None:intergenic | 45.0% | |
| TGAACCAAACATGGTAGGCA+AGG | + | tig0020594:132306-132325 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCACTTCACT+TGG | + | tig0020594:132485-132504 | None:intergenic | 45.0% |
| ! | TTTTGTGATCAGGTATGCCG+TGG | - | tig0020594:132687-132706 | Msa1383440:intron | 45.0% |
| CTTAGAGGACTTGAGAAGCT+TGG | - | tig0020594:132734-132753 | Msa1383440:intron | 45.0% | |
| ! | TTGTGCATGACTAGCTACCT+GGG | + | tig0020594:132813-132832 | None:intergenic | 45.0% |
| ! | TTTGTGCATGACTAGCTACC+TGG | + | tig0020594:132814-132833 | None:intergenic | 45.0% |
| !! | TCAAGCTATTCTGAGACTGG+CGG | + | tig0020594:132847-132866 | None:intergenic | 45.0% |
| AGCTGCATAAGCCAACTAAG+TGG | - | tig0020594:133051-133070 | Msa1383440:CDS | 45.0% | |
| ! | AAATCAGGTGCTGCACTATG+AGG | + | tig0020594:133165-133184 | None:intergenic | 45.0% |
| !! | CTCTGTTAGCTCTAATGGCA+TGG | + | tig0020594:133208-133227 | None:intergenic | 45.0% |
| CATGCCATTAGAGCTAACAG+AGG | - | tig0020594:133206-133225 | Msa1383440:CDS | 45.0% | |
| !! | CATGCCTCTGTTAGCTCTAA+TGG | + | tig0020594:133213-133232 | None:intergenic | 45.0% |
| GGAGGAGGCTATTGATAAAG+AGG | + | tig0020594:132285-132304 | None:intergenic | 45.0% | |
| TGAACCAAACATGGTAGGCA+AGG | + | tig0020594:132306-132325 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCACTTCACT+TGG | + | tig0020594:132485-132504 | None:intergenic | 45.0% |
| ! | TTTTGTGATCAGGTATGCCG+TGG | - | tig0020594:132687-132706 | Msa1383440:intron | 45.0% |
| CTTAGAGGACTTGAGAAGCT+TGG | - | tig0020594:132734-132753 | Msa1383440:intron | 45.0% | |
| ! | TTGTGCATGACTAGCTACCT+GGG | + | tig0020594:132813-132832 | None:intergenic | 45.0% |
| ! | TTTGTGCATGACTAGCTACC+TGG | + | tig0020594:132814-132833 | None:intergenic | 45.0% |
| !! | TCAAGCTATTCTGAGACTGG+CGG | + | tig0020594:132847-132866 | None:intergenic | 45.0% |
| AGCTGCATAAGCCAACTAAG+TGG | - | tig0020594:133051-133070 | Msa1383440:CDS | 45.0% | |
| ! | AAATCAGGTGCTGCACTATG+AGG | + | tig0020594:133165-133184 | None:intergenic | 45.0% |
| !! | CTCTGTTAGCTCTAATGGCA+TGG | + | tig0020594:133208-133227 | None:intergenic | 45.0% |
| CATGCCATTAGAGCTAACAG+AGG | - | tig0020594:133206-133225 | Msa1383440:CDS | 45.0% | |
| !! | CATGCCTCTGTTAGCTCTAA+TGG | + | tig0020594:133213-133232 | None:intergenic | 45.0% |
| AGAACTACCTGCCATCATCG+CGG | - | tig0020594:132258-132277 | Msa1383440:CDS | 50.0% | |
| GATAAAGAGGTCCGCGATGA+TGG | + | tig0020594:132272-132291 | None:intergenic | 50.0% | |
| AAACATGGTAGGCAAGGAGG+AGG | + | tig0020594:132300-132319 | None:intergenic | 50.0% | |
| TCCTCCTTGCCTACCATGTT+TGG | - | tig0020594:132299-132318 | Msa1383440:CDS | 50.0% | |
| ACCAAACATGGTAGGCAAGG+AGG | + | tig0020594:132303-132322 | None:intergenic | 50.0% | |
| AGGACTTGAGAAGCTTGGGA+AGG | - | tig0020594:132739-132758 | Msa1383440:intron | 50.0% | |
| GGACTTGAGAAGCTTGGGAA+GGG | - | tig0020594:132740-132759 | Msa1383440:intron | 50.0% | |
| AGAAGCTTGGGAAGGGTAAC+TGG | - | tig0020594:132747-132766 | Msa1383440:intron | 50.0% | |
| CAGGTGGGATGTGAAAAACC+AGG | - | tig0020594:133003-133022 | Msa1383440:intron | 50.0% | |
| TGAGGATGAGAAAGCCACTG+AGG | + | tig0020594:133093-133112 | None:intergenic | 50.0% | |
| AGAACTACCTGCCATCATCG+CGG | - | tig0020594:132258-132277 | Msa1383440:CDS | 50.0% | |
| GATAAAGAGGTCCGCGATGA+TGG | + | tig0020594:132272-132291 | None:intergenic | 50.0% | |
| AAACATGGTAGGCAAGGAGG+AGG | + | tig0020594:132300-132319 | None:intergenic | 50.0% | |
| TCCTCCTTGCCTACCATGTT+TGG | - | tig0020594:132299-132318 | Msa1383440:CDS | 50.0% | |
| ACCAAACATGGTAGGCAAGG+AGG | + | tig0020594:132303-132322 | None:intergenic | 50.0% | |
| AGGACTTGAGAAGCTTGGGA+AGG | - | tig0020594:132739-132758 | Msa1383440:intron | 50.0% | |
| GGACTTGAGAAGCTTGGGAA+GGG | - | tig0020594:132740-132759 | Msa1383440:intron | 50.0% | |
| AGAAGCTTGGGAAGGGTAAC+TGG | - | tig0020594:132747-132766 | Msa1383440:intron | 50.0% | |
| CAGGTGGGATGTGAAAAACC+AGG | - | tig0020594:133003-133022 | Msa1383440:intron | 50.0% | |
| TGAGGATGAGAAAGCCACTG+AGG | + | tig0020594:133093-133112 | None:intergenic | 50.0% | |
| CTTGGGAAGGGTAACTGGAG+AGG | - | tig0020594:132752-132771 | Msa1383440:intron | 55.0% | |
| ! | GCATGACTAGCTACCTGGGT+TGG | + | tig0020594:132809-132828 | None:intergenic | 55.0% |
| CTTGGGAAGGGTAACTGGAG+AGG | - | tig0020594:132752-132771 | Msa1383440:intron | 55.0% | |
| ! | GCATGACTAGCTACCTGGGT+TGG | + | tig0020594:132809-132828 | None:intergenic | 55.0% |
| ! | AAGAGGTCCGCGATGATGGC+AGG | + | tig0020594:132268-132287 | None:intergenic | 60.0% |
| ATCAGGTATGCCGTGGACCG+AGG | - | tig0020594:132694-132713 | Msa1383440:intron | 60.0% | |
| ATGTGCTCCTCCTCGGTCCA+CGG | + | tig0020594:132707-132726 | None:intergenic | 60.0% | |
| ! | AAGAGGTCCGCGATGATGGC+AGG | + | tig0020594:132268-132287 | None:intergenic | 60.0% |
| ATCAGGTATGCCGTGGACCG+AGG | - | tig0020594:132694-132713 | Msa1383440:intron | 60.0% | |
| ATGTGCTCCTCCTCGGTCCA+CGG | + | tig0020594:132707-132726 | None:intergenic | 60.0% | |
| AGGTATGCCGTGGACCGAGG+AGG | - | tig0020594:132697-132716 | Msa1383440:intron | 65.0% | |
| AGGTATGCCGTGGACCGAGG+AGG | - | tig0020594:132697-132716 | Msa1383440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020594 | gene | 132122 | 133242 | 132122 | ID=Msa1383440;Name=Msa1383440 |
| tig0020594 | mRNA | 132122 | 133242 | 132122 | ID=Msa1383440-mRNA-1;Parent=Msa1383440;Name=Msa1383440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.5|0.66|3|0|219 |
| tig0020594 | exon | 133023 | 133242 | 133023 | ID=Msa1383440-mRNA-1:exon:8567;Parent=Msa1383440-mRNA-1 |
| tig0020594 | exon | 132463 | 132665 | 132463 | ID=Msa1383440-mRNA-1:exon:8566;Parent=Msa1383440-mRNA-1 |
| tig0020594 | exon | 132122 | 132358 | 132122 | ID=Msa1383440-mRNA-1:exon:8565;Parent=Msa1383440-mRNA-1 |
| tig0020594 | CDS | 133023 | 133242 | 133023 | ID=Msa1383440-mRNA-1:cds;Parent=Msa1383440-mRNA-1 |
| tig0020594 | CDS | 132463 | 132665 | 132463 | ID=Msa1383440-mRNA-1:cds;Parent=Msa1383440-mRNA-1 |
| tig0020594 | CDS | 132122 | 132358 | 132122 | ID=Msa1383440-mRNA-1:cds;Parent=Msa1383440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
