AlfalfaGEDB | Msa0381760

M. sativa cultivar zhongmu-4 / Msa0381760

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381760	XP_003603145.1	87.391	230	13	1	1	214	1	230	4.11e-140	401

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381760	sp\|Q7XC57\|MYBS3_ORYSJ	36.923	195	90	4	3	176	1	183	1.79e-27	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381760	G7J7M5	87.391	230	13	1	1	214	1	230	1.96e-140	401

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TFs/TRs:

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Gene ID	Type	Classification
Msa0381760	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140490	Msa0381760	0.814478	1.509766e-51	-8.615850e-47
Msa0186800	Msa0381760	0.814480	1.507754e-51	-8.615850e-47
Msa0381760	Msa1383440	0.821897	3.162214e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381760	MtrunA17_Chr3g0135671	87.391	230	13	1	1	214	1	230	3.78e-144	401
Msa0381760	MtrunA17_Chr6g0488471	42.308	182	73	7	3	157	1	177	9.63e-32	117
Msa0381760	MtrunA17_Chr4g0055931	37.705	183	88	3	3	162	1	180	2.72e-30	114
Msa0381760	MtrunA17_Chr5g0415191	42.763	152	54	5	1	122	1	149	1.06e-26	104
Msa0381760	MtrunA17_Chr8g0389241	40.462	173	69	4	5	146	4	173	7.40e-26	101
Msa0381760	MtrunA17_Chr2g0331031	62.857	70	23	1	70	139	104	170	2.27e-23	95.9
Msa0381760	MtrunA17_Chr1g0210471	61.333	75	27	1	60	134	109	181	3.76e-23	93.6
Msa0381760	MtrunA17_Chr5g0429521	48.039	102	46	2	70	171	127	221	7.15e-23	94.0
Msa0381760	MtrunA17_Chr5g0436501	47.959	98	41	2	35	128	87	178	3.34e-22	91.7
Msa0381760	MtrunA17_Chr3g0104071	54.217	83	31	2	70	152	142	217	1.98e-21	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381760	AT5G56840.1	38.565	223	115	5	3	207	1	219	1.78e-31	115
Msa0381760	AT5G47390.1	33.745	243	99	7	3	215	1	211	1.79e-27	107
Msa0381760	AT5G61620.1	39.306	173	74	5	1	145	6	175	3.87e-27	105
Msa0381760	AT1G70000.1	38.621	145	64	3	3	122	1	145	1.82e-23	95.1
Msa0381760	AT1G70000.2	38.621	145	64	3	3	122	1	145	1.82e-23	95.1
Msa0381760	AT2G38090.1	62.500	64	24	0	70	133	136	199	1.14e-21	90.9
Msa0381760	AT5G58900.1	54.545	77	35	0	70	146	136	212	1.33e-21	90.5
Msa0381760	AT5G01200.1	60.938	64	25	0	70	133	141	204	2.21e-21	89.7
Msa0381760	AT5G04760.1	48.421	95	43	2	61	151	85	177	5.99e-21	87.4
Msa0381760	AT1G49010.1	56.757	74	29	2	69	142	128	198	8.39e-21	89.0

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Find 47 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGGTCACAATTCA+AGG	0.393633	3_1:-84012641	Msa0381760:CDS
AAACATGGTAGGCAAGGAGG+AGG	0.626173	3_1:+84012497	None:intergenic
AAATATCATGTGCTCCTCCT+CGG	0.585344	3_1:+84012083	None:intergenic
AAATCAGGTGCTGCACTATG+AGG	0.523156	3_1:+84011632	None:intergenic
AAGAGGTCCGCGATGATGGC+AGG	0.511716	3_1:+84012529	None:intergenic
AATTTCTACTTCCACTTAGT+TGG	0.375503	3_1:+84011732	None:intergenic
ACACTACTGGTTAGCTTAAG+GGG	0.538405	3_1:+84011559	None:intergenic
ACCAAACATGGTAGGCAAGG+AGG	0.664492	3_1:+84012494	None:intergenic
AGAACTACCTGCCATCATCG+CGG	0.745192	3_1:-84012536	Msa0381760:CDS
AGAAGCTTGGGAAGGGTAAC+TGG	0.328316	3_1:-84012047	Msa0381760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTCATATTGTGAAAACTT+TGG	-	chr3_1:84011592-84011611	Msa0381760:CDS	30.0%
AAAACTTTGGTCACAATTCA+AGG	-	chr3_1:84011605-84011624	Msa0381760:CDS	30.0%
TGATATATGCTCGTTTCTTA+CGG	+	chr3_1:84011800-84011819	None:intergenic	30.0%
TAGAATTGTGAATTGTTGCT+TGG	-	chr3_1:84012090-84012109	Msa0381760:CDS	30.0%
AATTTCTACTTCCACTTAGT+TGG	+	chr3_1:84012517-84012536	None:intergenic	30.0%
CTCAACATTCAATACTGAAA+TGG	-	chr3_1:84012561-84012580	Msa0381760:CDS	30.0%
TGCTCATATTGTGAAAACTT+TGG	-	chr3_1:84011592-84011611	Msa0381760:CDS	30.0%
AAAACTTTGGTCACAATTCA+AGG	-	chr3_1:84011605-84011624	Msa0381760:CDS	30.0%
TGATATATGCTCGTTTCTTA+CGG	+	chr3_1:84011800-84011819	None:intergenic	30.0%
TAGAATTGTGAATTGTTGCT+TGG	-	chr3_1:84012090-84012109	Msa0381760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	84011574	84012694	84011574	ID=Msa0381760;Name=Msa0381760
chr3_1	mRNA	84011574	84012694	84011574	ID=Msa0381760-mRNA-1;Parent=Msa0381760;Name=Msa0381760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|219
chr3_1	exon	84012475	84012694	84012475	ID=Msa0381760-mRNA-1:exon:21771;Parent=Msa0381760-mRNA-1
chr3_1	exon	84011915	84012117	84011915	ID=Msa0381760-mRNA-1:exon:21770;Parent=Msa0381760-mRNA-1
chr3_1	exon	84011574	84011810	84011574	ID=Msa0381760-mRNA-1:exon:21769;Parent=Msa0381760-mRNA-1
chr3_1	CDS	84012475	84012694	84012475	ID=Msa0381760-mRNA-1:cds;Parent=Msa0381760-mRNA-1
chr3_1	CDS	84011915	84012117	84011915	ID=Msa0381760-mRNA-1:cds;Parent=Msa0381760-mRNA-1
chr3_1	CDS	84011574	84011810	84011574	ID=Msa0381760-mRNA-1:cds;Parent=Msa0381760-mRNA-1

Gene Sequence

>Msa0381760

ATGAGAATAGCTAGGAAATGCTCATATTGTGAAAACTTTGGTCACAATTCAAGGACTTGCAATAACAGTCTCAAAGAGCAATTTCATCTTTTTTCTTCTTCACCTTCATATTTGCCCACAAAAAGGAGTTTCAGAAAGAACTACCTGCCATCATCGCGGACCTCTTTATCAATAGCCTCCTCCTTGCCTACCATGTTTGGTTCAAATGAAAATTCAGATAGTATGCCGTGGACCGAGGAGGAGCACATGATATTTCTTAGAGGACTTGAGAAGCTTGGGAAGGGTAACTGGAGAGGTATATCTAGAGATTTTGTAACAACAAAAACACCAACCCAGGTAGCTAGTCATGCACAAAAACATTTTCTCCGCCAGTCTCAGAATAGCTTGATCAATAGAAGAAAACACCATCTTAGCCTCCATTATGTGGGATGTGAAAAACCAGGAATAAATTTGACTCCAAATGATATCAGCTGCATAAGCCAACTAAGTGGAAGTAGAAATTTTCTTCCTCAGTGGCTTTCTCATCCTCAACATTCAATACTGAAATGGCCTAACTCTTCAACATCAATGGATTGTACTCCTCATAGTGCAGCACCTGATTTAGAACTCAAACTTGCAACTCCCATGCCATTAGAGCTAACAGAGGCATGCTCCCCTTAA

Protein sequence

>Msa0381760

MRIARKCSYCENFGHNSRTCNNSLKEQFHLFSSSPSYLPTKRSFRKNYLPSSRTSLSIASSLPTMFGSNENSDSMPWTEEEHMIFLRGLEKLGKGNWRGISRDFVTTKTPTQVASHAQKHFLRQSQNSLINRRKHHLSLHYVGCEKPGINLTPNDISCISQLSGSRNFLPQWLSHPQHSILKWPNSSTSMDCTPHSAAPDLELKLATPMPLELTEACSP*