Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381760 | XP_003603145.1 | 87.391 | 230 | 13 | 1 | 1 | 214 | 1 | 230 | 4.11e-140 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381760 | sp|Q7XC57|MYBS3_ORYSJ | 36.923 | 195 | 90 | 4 | 3 | 176 | 1 | 183 | 1.79e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381760 | G7J7M5 | 87.391 | 230 | 13 | 1 | 1 | 214 | 1 | 230 | 1.96e-140 | 401 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0381760 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140490 | Msa0381760 | 0.814478 | 1.509766e-51 | -8.615850e-47 |
| Msa0186800 | Msa0381760 | 0.814480 | 1.507754e-51 | -8.615850e-47 |
| Msa0381760 | Msa1383440 | 0.821897 | 3.162214e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381760 | MtrunA17_Chr3g0135671 | 87.391 | 230 | 13 | 1 | 1 | 214 | 1 | 230 | 3.78e-144 | 401 |
| Msa0381760 | MtrunA17_Chr6g0488471 | 42.308 | 182 | 73 | 7 | 3 | 157 | 1 | 177 | 9.63e-32 | 117 |
| Msa0381760 | MtrunA17_Chr4g0055931 | 37.705 | 183 | 88 | 3 | 3 | 162 | 1 | 180 | 2.72e-30 | 114 |
| Msa0381760 | MtrunA17_Chr5g0415191 | 42.763 | 152 | 54 | 5 | 1 | 122 | 1 | 149 | 1.06e-26 | 104 |
| Msa0381760 | MtrunA17_Chr8g0389241 | 40.462 | 173 | 69 | 4 | 5 | 146 | 4 | 173 | 7.40e-26 | 101 |
| Msa0381760 | MtrunA17_Chr2g0331031 | 62.857 | 70 | 23 | 1 | 70 | 139 | 104 | 170 | 2.27e-23 | 95.9 |
| Msa0381760 | MtrunA17_Chr1g0210471 | 61.333 | 75 | 27 | 1 | 60 | 134 | 109 | 181 | 3.76e-23 | 93.6 |
| Msa0381760 | MtrunA17_Chr5g0429521 | 48.039 | 102 | 46 | 2 | 70 | 171 | 127 | 221 | 7.15e-23 | 94.0 |
| Msa0381760 | MtrunA17_Chr5g0436501 | 47.959 | 98 | 41 | 2 | 35 | 128 | 87 | 178 | 3.34e-22 | 91.7 |
| Msa0381760 | MtrunA17_Chr3g0104071 | 54.217 | 83 | 31 | 2 | 70 | 152 | 142 | 217 | 1.98e-21 | 90.1 |
| Msa0381760 | MtrunA17_Chr7g0241761 | 64.062 | 64 | 23 | 0 | 70 | 133 | 135 | 198 | 2.91e-21 | 89.7 |
| Msa0381760 | MtrunA17_Chr4g0062741 | 54.795 | 73 | 30 | 1 | 70 | 142 | 133 | 202 | 1.00e-20 | 88.2 |
| Msa0381760 | MtrunA17_Chr4g0059701 | 69.231 | 52 | 16 | 0 | 70 | 121 | 79 | 130 | 1.01e-20 | 87.8 |
| Msa0381760 | MtrunA17_Chr1g0162081 | 52.381 | 84 | 37 | 2 | 70 | 153 | 117 | 197 | 3.75e-20 | 86.7 |
| Msa0381760 | MtrunA17_Chr5g0409841 | 41.322 | 121 | 60 | 4 | 51 | 163 | 66 | 183 | 3.97e-20 | 85.1 |
| Msa0381760 | MtrunA17_Chr5g0440731 | 52.239 | 67 | 32 | 0 | 74 | 140 | 104 | 170 | 1.97e-19 | 84.3 |
| Msa0381760 | MtrunA17_Chr5g0440741 | 54.688 | 64 | 29 | 0 | 77 | 140 | 102 | 165 | 2.36e-19 | 84.3 |
| Msa0381760 | MtrunA17_Chr6g0452791 | 68.750 | 48 | 15 | 0 | 75 | 122 | 80 | 127 | 5.88e-19 | 80.9 |
| Msa0381760 | MtrunA17_Chr3g0092621 | 59.322 | 59 | 24 | 0 | 75 | 133 | 84 | 142 | 1.38e-18 | 79.7 |
| Msa0381760 | MtrunA17_Chr5g0409831 | 48.684 | 76 | 33 | 2 | 51 | 122 | 51 | 124 | 3.77e-16 | 74.3 |
| Msa0381760 | MtrunA17_Chr1g0192061 | 46.479 | 71 | 37 | 1 | 71 | 141 | 57 | 126 | 4.88e-14 | 67.8 |
| Msa0381760 | MtrunA17_Chr5g0432941 | 47.945 | 73 | 37 | 1 | 52 | 124 | 90 | 161 | 9.96e-13 | 65.1 |
| Msa0381760 | MtrunA17_Chr5g0432921 | 64.583 | 48 | 16 | 1 | 77 | 124 | 115 | 161 | 1.03e-12 | 65.1 |
| Msa0381760 | MtrunA17_Chr3g0113121 | 48.571 | 70 | 32 | 1 | 77 | 142 | 97 | 166 | 1.04e-12 | 64.7 |
| Msa0381760 | MtrunA17_Chr8g0365011 | 42.353 | 85 | 35 | 2 | 72 | 142 | 89 | 173 | 8.28e-12 | 63.2 |
| Msa0381760 | MtrunA17_Chr8g0364731 | 50.769 | 65 | 31 | 1 | 84 | 148 | 10 | 73 | 7.61e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381760 | AT5G56840.1 | 38.565 | 223 | 115 | 5 | 3 | 207 | 1 | 219 | 1.78e-31 | 115 |
| Msa0381760 | AT5G47390.1 | 33.745 | 243 | 99 | 7 | 3 | 215 | 1 | 211 | 1.79e-27 | 107 |
| Msa0381760 | AT5G61620.1 | 39.306 | 173 | 74 | 5 | 1 | 145 | 6 | 175 | 3.87e-27 | 105 |
| Msa0381760 | AT1G70000.1 | 38.621 | 145 | 64 | 3 | 3 | 122 | 1 | 145 | 1.82e-23 | 95.1 |
| Msa0381760 | AT1G70000.2 | 38.621 | 145 | 64 | 3 | 3 | 122 | 1 | 145 | 1.82e-23 | 95.1 |
| Msa0381760 | AT2G38090.1 | 62.500 | 64 | 24 | 0 | 70 | 133 | 136 | 199 | 1.14e-21 | 90.9 |
| Msa0381760 | AT5G58900.1 | 54.545 | 77 | 35 | 0 | 70 | 146 | 136 | 212 | 1.33e-21 | 90.5 |
| Msa0381760 | AT5G01200.1 | 60.938 | 64 | 25 | 0 | 70 | 133 | 141 | 204 | 2.21e-21 | 89.7 |
| Msa0381760 | AT5G04760.1 | 48.421 | 95 | 43 | 2 | 61 | 151 | 85 | 177 | 5.99e-21 | 87.4 |
| Msa0381760 | AT1G49010.1 | 56.757 | 74 | 29 | 2 | 69 | 142 | 128 | 198 | 8.39e-21 | 89.0 |
| Msa0381760 | AT3G16350.1 | 68.519 | 54 | 17 | 0 | 69 | 122 | 131 | 184 | 9.17e-21 | 89.7 |
| Msa0381760 | AT1G74840.2 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 8.97e-20 | 84.7 |
| Msa0381760 | AT5G08520.1 | 54.795 | 73 | 30 | 2 | 70 | 142 | 113 | 182 | 1.41e-19 | 85.1 |
| Msa0381760 | AT1G74840.1 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.55e-19 | 84.7 |
| Msa0381760 | AT3G11280.2 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.51e-19 | 83.6 |
| Msa0381760 | AT3G11280.1 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.51e-19 | 83.6 |
| Msa0381760 | AT5G05790.2 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.05e-18 | 82.4 |
| Msa0381760 | AT5G05790.1 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.05e-18 | 82.4 |
| Msa0381760 | AT4G09450.1 | 48.837 | 86 | 41 | 2 | 68 | 151 | 84 | 168 | 1.99e-18 | 80.5 |
| Msa0381760 | AT1G19000.2 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.26e-18 | 81.3 |
| Msa0381760 | AT1G19000.1 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.26e-18 | 81.3 |
| Msa0381760 | AT3G10580.2 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 1.46e-17 | 79.0 |
| Msa0381760 | AT3G10580.1 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 2.05e-17 | 79.3 |
| Msa0381760 | AT3G10590.1 | 41.758 | 91 | 52 | 1 | 76 | 165 | 112 | 202 | 1.82e-12 | 64.3 |
| Msa0381760 | AT5G23650.1 | 62.500 | 48 | 18 | 0 | 74 | 121 | 119 | 166 | 1.98e-12 | 65.9 |
Find 47 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCTTGCCTACCATGTT+TGG | 0.292024 | 3_1:-84012495 | Msa0381760:CDS |
| AGAAGCTTGGGAAGGGTAAC+TGG | 0.328316 | 3_1:-84012047 | Msa0381760:CDS |
| CATGCCTCTGTTAGCTCTAA+TGG | 0.334233 | 3_1:+84011584 | None:intergenic |
| CTTCATATTTGCCCACAAAA+AGG | 0.340381 | 3_1:-84012569 | Msa0381760:CDS |
| CTTATGCAGCTGATATCATT+TGG | 0.348494 | 3_1:+84011755 | None:intergenic |
| TTTGTGCATGACTAGCTACC+TGG | 0.362976 | 3_1:+84011983 | None:intergenic |
| TTTGGAGTCAAATTTATTCC+TGG | 0.373119 | 3_1:+84011773 | None:intergenic |
| AATTTCTACTTCCACTTAGT+TGG | 0.375503 | 3_1:+84011732 | None:intergenic |
| AAAACTTTGGTCACAATTCA+AGG | 0.393633 | 3_1:-84012641 | Msa0381760:CDS |
| TCCATTGATGTTGAAGAGTT+AGG | 0.394239 | 3_1:+84011662 | None:intergenic |
| CTCAACATTCAATACTGAAA+TGG | 0.409371 | 3_1:-84011685 | Msa0381760:CDS |
| CTTAGAGGACTTGAGAAGCT+TGG | 0.418302 | 3_1:-84012060 | Msa0381760:CDS |
| TTAGAGGACTTGAGAAGCTT+GGG | 0.428690 | 3_1:-84012059 | Msa0381760:CDS |
| GCAAGTTTGAGTTCTAAATC+AGG | 0.432705 | 3_1:+84011617 | None:intergenic |
| TGCTCATATTGTGAAAACTT+TGG | 0.434234 | 3_1:-84012654 | Msa0381760:CDS |
| GAGCACATGATATTTCTTAG+AGG | 0.438938 | 3_1:-84012075 | Msa0381760:CDS |
| GCCTAACTCTTCAACATCAA+TGG | 0.449138 | 3_1:-84011663 | Msa0381760:CDS |
| GATAAAGAGGTCCGCGATGA+TGG | 0.481364 | 3_1:+84012525 | None:intergenic |
| CTCTGTTAGCTCTAATGGCA+TGG | 0.487511 | 3_1:+84011589 | None:intergenic |
| TATAAGAAATGAGAATAGCT+AGG | 0.489637 | 3_1:-84012680 | None:intergenic |
| TTACATAATGGAGGCTAAGA+TGG | 0.500282 | 3_1:+84011911 | None:intergenic |
| AAGAGGTCCGCGATGATGGC+AGG | 0.511716 | 3_1:+84012529 | None:intergenic |
| AAATCAGGTGCTGCACTATG+AGG | 0.523156 | 3_1:+84011632 | None:intergenic |
| TCTGTTAGCTCTAATGGCAT+GGG | 0.534114 | 3_1:+84011590 | None:intergenic |
| TGATCAAGCTATTCTGAGAC+TGG | 0.538315 | 3_1:+84011947 | None:intergenic |
| ACACTACTGGTTAGCTTAAG+GGG | 0.538405 | 3_1:+84011559 | None:intergenic |
| GGAGGAGGCTATTGATAAAG+AGG | 0.539005 | 3_1:+84012512 | None:intergenic |
| TTGTGCATGACTAGCTACCT+GGG | 0.547274 | 3_1:+84011984 | None:intergenic |
| TTAATTTACTTACATAATGG+AGG | 0.564586 | 3_1:+84011902 | None:intergenic |
| TCATTTGAACCAAACATGGT+AGG | 0.568762 | 3_1:+84012486 | None:intergenic |
| GGACTTGAGAAGCTTGGGAA+GGG | 0.571874 | 3_1:-84012054 | Msa0381760:CDS |
| ATGTGCTCCTCCTCGGTCCA+CGG | 0.572063 | 3_1:+84012090 | None:intergenic |
| CATTTCAGTATTGAATGTTG+AGG | 0.583001 | 3_1:+84011686 | None:intergenic |
| AGCTGCATAAGCCAACTAAG+TGG | 0.584599 | 3_1:-84011743 | Msa0381760:CDS |
| AAATATCATGTGCTCCTCCT+CGG | 0.585344 | 3_1:+84012083 | None:intergenic |
| AGGACTTGAGAAGCTTGGGA+AGG | 0.598172 | 3_1:-84012055 | Msa0381760:CDS |
| TGAACCAAACATGGTAGGCA+AGG | 0.600769 | 3_1:+84012491 | None:intergenic |
| ATCAGGTATGCCGTGGACCG+AGG | 0.606863 | 3_1:-84012100 | Msa0381760:intron |
| GCATGACTAGCTACCTGGGT+TGG | 0.613754 | 3_1:+84011988 | None:intergenic |
| AAACATGGTAGGCAAGGAGG+AGG | 0.626173 | 3_1:+84012497 | None:intergenic |
| CTTGGGAAGGGTAACTGGAG+AGG | 0.645821 | 3_1:-84012042 | Msa0381760:CDS |
| ACCAAACATGGTAGGCAAGG+AGG | 0.664492 | 3_1:+84012494 | None:intergenic |
| AGGTATGCCGTGGACCGAGG+AGG | 0.665092 | 3_1:-84012097 | Msa0381760:CDS |
| TCAAGCTATTCTGAGACTGG+CGG | 0.679211 | 3_1:+84011950 | None:intergenic |
| TGAGGATGAGAAAGCCACTG+AGG | 0.730112 | 3_1:+84011704 | None:intergenic |
| CATGCCATTAGAGCTAACAG+AGG | 0.740508 | 3_1:-84011588 | Msa0381760:CDS |
| AGAACTACCTGCCATCATCG+CGG | 0.745192 | 3_1:-84012536 | Msa0381760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTACTTACATAA+TGG | + | chr3_1:84012350-84012369 | None:intergenic | 10.0% |
| !! | AAATTAAATATAGAATAAGA+TGG | + | chr3_1:84012433-84012452 | None:intergenic | 10.0% |
| !! | ATCTTATTCTATATTTAATT+TGG | - | chr3_1:84012432-84012451 | Msa0381760:intron | 10.0% |
| !!! | ATTTTAATTTACTTACATAA+TGG | + | chr3_1:84012350-84012369 | None:intergenic | 10.0% |
| !! | AAATTAAATATAGAATAAGA+TGG | + | chr3_1:84012433-84012452 | None:intergenic | 10.0% |
| !! | ATCTTATTCTATATTTAATT+TGG | - | chr3_1:84012432-84012451 | Msa0381760:intron | 10.0% |
| !!! | TAATTATAACCTTTTTTACT+GGG | + | chr3_1:84011832-84011851 | None:intergenic | 15.0% |
| !!! | ATAATTATAACCTTTTTTAC+TGG | + | chr3_1:84011833-84011852 | None:intergenic | 15.0% |
| !!! | AATTAAAGAAGTTTAAAGTA+AGG | + | chr3_1:84012406-84012425 | None:intergenic | 15.0% |
| !!! | TAATTATAACCTTTTTTACT+GGG | + | chr3_1:84011832-84011851 | None:intergenic | 15.0% |
| !!! | ATAATTATAACCTTTTTTAC+TGG | + | chr3_1:84011833-84011852 | None:intergenic | 15.0% |
| !!! | AATTAAAGAAGTTTAAAGTA+AGG | + | chr3_1:84012406-84012425 | None:intergenic | 15.0% |
| !! | TTAATTTACTTACATAATGG+AGG | + | chr3_1:84012347-84012366 | None:intergenic | 20.0% |
| !!! | TATTCTATATTTAATTTGGC+AGG | - | chr3_1:84012436-84012455 | Msa0381760:intron | 20.0% |
| !! | TTAATTTACTTACATAATGG+AGG | + | chr3_1:84012347-84012366 | None:intergenic | 20.0% |
| !!! | TATTCTATATTTAATTTGGC+AGG | - | chr3_1:84012436-84012455 | Msa0381760:intron | 20.0% |
| !! | ATTTTCATTTGAACCAAACA+TGG | + | chr3_1:84011767-84011786 | None:intergenic | 25.0% |
| ! | TGAATCCAAAATTCAAAATC+TGG | - | chr3_1:84011911-84011930 | Msa0381760:intron | 25.0% |
| ! | TCCAACTAATGAGAAAATTA+AGG | - | chr3_1:84011951-84011970 | Msa0381760:CDS | 25.0% |
| !! | TCCTTAATTTTCTCATTAGT+TGG | + | chr3_1:84011955-84011974 | None:intergenic | 25.0% |
| !!! | ATGTACATTTTTTTGTGATC+AGG | - | chr3_1:84012129-84012148 | Msa0381760:intron | 25.0% |
| !!! | TGCACGTAACTATTTTTATA+TGG | + | chr3_1:84012379-84012398 | None:intergenic | 25.0% |
| !! | ATTTTCATTTGAACCAAACA+TGG | + | chr3_1:84011767-84011786 | None:intergenic | 25.0% |
| ! | TGAATCCAAAATTCAAAATC+TGG | - | chr3_1:84011911-84011930 | Msa0381760:intron | 25.0% |
| ! | TCCAACTAATGAGAAAATTA+AGG | - | chr3_1:84011951-84011970 | Msa0381760:CDS | 25.0% |
| !! | TCCTTAATTTTCTCATTAGT+TGG | + | chr3_1:84011955-84011974 | None:intergenic | 25.0% |
| !!! | ATGTACATTTTTTTGTGATC+AGG | - | chr3_1:84012129-84012148 | Msa0381760:intron | 25.0% |
| !!! | TGCACGTAACTATTTTTATA+TGG | + | chr3_1:84012379-84012398 | None:intergenic | 25.0% |
| TGCTCATATTGTGAAAACTT+TGG | - | chr3_1:84011592-84011611 | Msa0381760:CDS | 30.0% | |
| AAAACTTTGGTCACAATTCA+AGG | - | chr3_1:84011605-84011624 | Msa0381760:CDS | 30.0% | |
| !!! | TTTCTGAAACTCCTTTTTGT+GGG | + | chr3_1:84011691-84011710 | None:intergenic | 30.0% |
| TGATATATGCTCGTTTCTTA+CGG | + | chr3_1:84011800-84011819 | None:intergenic | 30.0% | |
| !! | AGTTTTGTGAGGGTTAAATT+AGG | - | chr3_1:84011887-84011906 | Msa0381760:intron | 30.0% |
| TAGAATTGTGAATTGTTGCT+TGG | - | chr3_1:84012090-84012109 | Msa0381760:CDS | 30.0% | |
| !! | TCTATATTTAATTTGGCAGG+TGG | - | chr3_1:84012439-84012458 | Msa0381760:intron | 30.0% |
| !! | CTATATTTAATTTGGCAGGT+GGG | - | chr3_1:84012440-84012459 | Msa0381760:intron | 30.0% |
| ! | TTTGGAGTCAAATTTATTCC+TGG | + | chr3_1:84012476-84012495 | None:intergenic | 30.0% |
| AATTTCTACTTCCACTTAGT+TGG | + | chr3_1:84012517-84012536 | None:intergenic | 30.0% | |
| ! | CATTTCAGTATTGAATGTTG+AGG | + | chr3_1:84012563-84012582 | None:intergenic | 30.0% |
| CTCAACATTCAATACTGAAA+TGG | - | chr3_1:84012561-84012580 | Msa0381760:CDS | 30.0% | |
| TGCTCATATTGTGAAAACTT+TGG | - | chr3_1:84011592-84011611 | Msa0381760:CDS | 30.0% | |
| AAAACTTTGGTCACAATTCA+AGG | - | chr3_1:84011605-84011624 | Msa0381760:CDS | 30.0% | |
| !!! | TTTCTGAAACTCCTTTTTGT+GGG | + | chr3_1:84011691-84011710 | None:intergenic | 30.0% |
| TGATATATGCTCGTTTCTTA+CGG | + | chr3_1:84011800-84011819 | None:intergenic | 30.0% | |
| !! | AGTTTTGTGAGGGTTAAATT+AGG | - | chr3_1:84011887-84011906 | Msa0381760:intron | 30.0% |
| TAGAATTGTGAATTGTTGCT+TGG | - | chr3_1:84012090-84012109 | Msa0381760:CDS | 30.0% | |
| !! | TCTATATTTAATTTGGCAGG+TGG | - | chr3_1:84012439-84012458 | Msa0381760:intron | 30.0% |
| !! | CTATATTTAATTTGGCAGGT+GGG | - | chr3_1:84012440-84012459 | Msa0381760:intron | 30.0% |
| ! | TTTGGAGTCAAATTTATTCC+TGG | + | chr3_1:84012476-84012495 | None:intergenic | 30.0% |
| AATTTCTACTTCCACTTAGT+TGG | + | chr3_1:84012517-84012536 | None:intergenic | 30.0% | |
| ! | CATTTCAGTATTGAATGTTG+AGG | + | chr3_1:84012563-84012582 | None:intergenic | 30.0% |
| CTCAACATTCAATACTGAAA+TGG | - | chr3_1:84012561-84012580 | Msa0381760:CDS | 30.0% | |
| ! | CTTTTTGTGGGCAAATATGA+AGG | + | chr3_1:84011679-84011698 | None:intergenic | 35.0% |
| CTTCATATTTGCCCACAAAA+AGG | - | chr3_1:84011677-84011696 | Msa0381760:CDS | 35.0% | |
| !!! | CTTTCTGAAACTCCTTTTTG+TGG | + | chr3_1:84011692-84011711 | None:intergenic | 35.0% |
| TCATTTGAACCAAACATGGT+AGG | + | chr3_1:84011763-84011782 | None:intergenic | 35.0% | |
| ACAATCAGACCCAGTAAAAA+AGG | - | chr3_1:84011820-84011839 | Msa0381760:intron | 35.0% | |
| !! | CTTACAGATCAGTTTTGTGA+GGG | - | chr3_1:84011877-84011896 | Msa0381760:intron | 35.0% |
| ! | CTTGGCCAGATTTTGAATTT+TGG | + | chr3_1:84011919-84011938 | None:intergenic | 35.0% |
| GAGCACATGATATTTCTTAG+AGG | - | chr3_1:84012171-84012190 | Msa0381760:intron | 35.0% | |
| ! | TTACATAATGGAGGCTAAGA+TGG | + | chr3_1:84012338-84012357 | None:intergenic | 35.0% |
| CTTATGCAGCTGATATCATT+TGG | + | chr3_1:84012494-84012513 | None:intergenic | 35.0% | |
| ! | GTAGAAATTTTCTTCCTCAG+TGG | - | chr3_1:84012528-84012547 | Msa0381760:CDS | 35.0% |
| TCCATTGATGTTGAAGAGTT+AGG | + | chr3_1:84012587-84012606 | None:intergenic | 35.0% | |
| !! | GCAAGTTTGAGTTCTAAATC+AGG | + | chr3_1:84012632-84012651 | None:intergenic | 35.0% |
| ! | CTTTTTGTGGGCAAATATGA+AGG | + | chr3_1:84011679-84011698 | None:intergenic | 35.0% |
| CTTCATATTTGCCCACAAAA+AGG | - | chr3_1:84011677-84011696 | Msa0381760:CDS | 35.0% | |
| !!! | CTTTCTGAAACTCCTTTTTG+TGG | + | chr3_1:84011692-84011711 | None:intergenic | 35.0% |
| TCATTTGAACCAAACATGGT+AGG | + | chr3_1:84011763-84011782 | None:intergenic | 35.0% | |
| ACAATCAGACCCAGTAAAAA+AGG | - | chr3_1:84011820-84011839 | Msa0381760:intron | 35.0% | |
| !! | CTTACAGATCAGTTTTGTGA+GGG | - | chr3_1:84011877-84011896 | Msa0381760:intron | 35.0% |
| ! | CTTGGCCAGATTTTGAATTT+TGG | + | chr3_1:84011919-84011938 | None:intergenic | 35.0% |
| GAGCACATGATATTTCTTAG+AGG | - | chr3_1:84012171-84012190 | Msa0381760:intron | 35.0% | |
| ! | TTACATAATGGAGGCTAAGA+TGG | + | chr3_1:84012338-84012357 | None:intergenic | 35.0% |
| CTTATGCAGCTGATATCATT+TGG | + | chr3_1:84012494-84012513 | None:intergenic | 35.0% | |
| ! | GTAGAAATTTTCTTCCTCAG+TGG | - | chr3_1:84012528-84012547 | Msa0381760:CDS | 35.0% |
| TCCATTGATGTTGAAGAGTT+AGG | + | chr3_1:84012587-84012606 | None:intergenic | 35.0% | |
| !! | GCAAGTTTGAGTTCTAAATC+AGG | + | chr3_1:84012632-84012651 | None:intergenic | 35.0% |
| CCTCACAAAACTGATCTGTA+AGG | + | chr3_1:84011879-84011898 | None:intergenic | 40.0% | |
| !! | CCTTACAGATCAGTTTTGTG+AGG | - | chr3_1:84011876-84011895 | Msa0381760:intron | 40.0% |
| AAATATCATGTGCTCCTCCT+CGG | + | chr3_1:84012166-84012185 | None:intergenic | 40.0% | |
| TTAGAGGACTTGAGAAGCTT+GGG | - | chr3_1:84012187-84012206 | Msa0381760:intron | 40.0% | |
| AACAACAAAAACACCAACCC+AGG | - | chr3_1:84012245-84012264 | Msa0381760:intron | 40.0% | |
| !! | TGATCAAGCTATTCTGAGAC+TGG | + | chr3_1:84012302-84012321 | None:intergenic | 40.0% |
| GCCTAACTCTTCAACATCAA+TGG | - | chr3_1:84012583-84012602 | Msa0381760:CDS | 40.0% | |
| !! | TCTGTTAGCTCTAATGGCAT+GGG | + | chr3_1:84012659-84012678 | None:intergenic | 40.0% |
| CCTCACAAAACTGATCTGTA+AGG | + | chr3_1:84011879-84011898 | None:intergenic | 40.0% | |
| !! | CCTTACAGATCAGTTTTGTG+AGG | - | chr3_1:84011876-84011895 | Msa0381760:intron | 40.0% |
| AAATATCATGTGCTCCTCCT+CGG | + | chr3_1:84012166-84012185 | None:intergenic | 40.0% | |
| TTAGAGGACTTGAGAAGCTT+GGG | - | chr3_1:84012187-84012206 | Msa0381760:intron | 40.0% | |
| AACAACAAAAACACCAACCC+AGG | - | chr3_1:84012245-84012264 | Msa0381760:intron | 40.0% | |
| !! | TGATCAAGCTATTCTGAGAC+TGG | + | chr3_1:84012302-84012321 | None:intergenic | 40.0% |
| GCCTAACTCTTCAACATCAA+TGG | - | chr3_1:84012583-84012602 | Msa0381760:CDS | 40.0% | |
| !! | TCTGTTAGCTCTAATGGCAT+GGG | + | chr3_1:84012659-84012678 | None:intergenic | 40.0% |
| GGAGGAGGCTATTGATAAAG+AGG | + | chr3_1:84011737-84011756 | None:intergenic | 45.0% | |
| TGAACCAAACATGGTAGGCA+AGG | + | chr3_1:84011758-84011777 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCACTTCACT+TGG | + | chr3_1:84011937-84011956 | None:intergenic | 45.0% |
| ! | TTTTGTGATCAGGTATGCCG+TGG | - | chr3_1:84012139-84012158 | Msa0381760:intron | 45.0% |
| CTTAGAGGACTTGAGAAGCT+TGG | - | chr3_1:84012186-84012205 | Msa0381760:intron | 45.0% | |
| ! | TTGTGCATGACTAGCTACCT+GGG | + | chr3_1:84012265-84012284 | None:intergenic | 45.0% |
| ! | TTTGTGCATGACTAGCTACC+TGG | + | chr3_1:84012266-84012285 | None:intergenic | 45.0% |
| !! | TCAAGCTATTCTGAGACTGG+CGG | + | chr3_1:84012299-84012318 | None:intergenic | 45.0% |
| AGCTGCATAAGCCAACTAAG+TGG | - | chr3_1:84012503-84012522 | Msa0381760:CDS | 45.0% | |
| ! | AAATCAGGTGCTGCACTATG+AGG | + | chr3_1:84012617-84012636 | None:intergenic | 45.0% |
| !! | CTCTGTTAGCTCTAATGGCA+TGG | + | chr3_1:84012660-84012679 | None:intergenic | 45.0% |
| CATGCCATTAGAGCTAACAG+AGG | - | chr3_1:84012658-84012677 | Msa0381760:CDS | 45.0% | |
| !! | CATGCCTCTGTTAGCTCTAA+TGG | + | chr3_1:84012665-84012684 | None:intergenic | 45.0% |
| GGAGGAGGCTATTGATAAAG+AGG | + | chr3_1:84011737-84011756 | None:intergenic | 45.0% | |
| TGAACCAAACATGGTAGGCA+AGG | + | chr3_1:84011758-84011777 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCACTTCACT+TGG | + | chr3_1:84011937-84011956 | None:intergenic | 45.0% |
| ! | TTTTGTGATCAGGTATGCCG+TGG | - | chr3_1:84012139-84012158 | Msa0381760:intron | 45.0% |
| CTTAGAGGACTTGAGAAGCT+TGG | - | chr3_1:84012186-84012205 | Msa0381760:intron | 45.0% | |
| ! | TTGTGCATGACTAGCTACCT+GGG | + | chr3_1:84012265-84012284 | None:intergenic | 45.0% |
| ! | TTTGTGCATGACTAGCTACC+TGG | + | chr3_1:84012266-84012285 | None:intergenic | 45.0% |
| !! | TCAAGCTATTCTGAGACTGG+CGG | + | chr3_1:84012299-84012318 | None:intergenic | 45.0% |
| AGCTGCATAAGCCAACTAAG+TGG | - | chr3_1:84012503-84012522 | Msa0381760:CDS | 45.0% | |
| ! | AAATCAGGTGCTGCACTATG+AGG | + | chr3_1:84012617-84012636 | None:intergenic | 45.0% |
| !! | CTCTGTTAGCTCTAATGGCA+TGG | + | chr3_1:84012660-84012679 | None:intergenic | 45.0% |
| CATGCCATTAGAGCTAACAG+AGG | - | chr3_1:84012658-84012677 | Msa0381760:CDS | 45.0% | |
| !! | CATGCCTCTGTTAGCTCTAA+TGG | + | chr3_1:84012665-84012684 | None:intergenic | 45.0% |
| AGAACTACCTGCCATCATCG+CGG | - | chr3_1:84011710-84011729 | Msa0381760:CDS | 50.0% | |
| GATAAAGAGGTCCGCGATGA+TGG | + | chr3_1:84011724-84011743 | None:intergenic | 50.0% | |
| AAACATGGTAGGCAAGGAGG+AGG | + | chr3_1:84011752-84011771 | None:intergenic | 50.0% | |
| TCCTCCTTGCCTACCATGTT+TGG | - | chr3_1:84011751-84011770 | Msa0381760:CDS | 50.0% | |
| ACCAAACATGGTAGGCAAGG+AGG | + | chr3_1:84011755-84011774 | None:intergenic | 50.0% | |
| AGGACTTGAGAAGCTTGGGA+AGG | - | chr3_1:84012191-84012210 | Msa0381760:intron | 50.0% | |
| GGACTTGAGAAGCTTGGGAA+GGG | - | chr3_1:84012192-84012211 | Msa0381760:intron | 50.0% | |
| AGAAGCTTGGGAAGGGTAAC+TGG | - | chr3_1:84012199-84012218 | Msa0381760:intron | 50.0% | |
| CAGGTGGGATGTGAAAAACC+AGG | - | chr3_1:84012455-84012474 | Msa0381760:intron | 50.0% | |
| TGAGGATGAGAAAGCCACTG+AGG | + | chr3_1:84012545-84012564 | None:intergenic | 50.0% | |
| AGAACTACCTGCCATCATCG+CGG | - | chr3_1:84011710-84011729 | Msa0381760:CDS | 50.0% | |
| GATAAAGAGGTCCGCGATGA+TGG | + | chr3_1:84011724-84011743 | None:intergenic | 50.0% | |
| AAACATGGTAGGCAAGGAGG+AGG | + | chr3_1:84011752-84011771 | None:intergenic | 50.0% | |
| TCCTCCTTGCCTACCATGTT+TGG | - | chr3_1:84011751-84011770 | Msa0381760:CDS | 50.0% | |
| ACCAAACATGGTAGGCAAGG+AGG | + | chr3_1:84011755-84011774 | None:intergenic | 50.0% | |
| AGGACTTGAGAAGCTTGGGA+AGG | - | chr3_1:84012191-84012210 | Msa0381760:intron | 50.0% | |
| GGACTTGAGAAGCTTGGGAA+GGG | - | chr3_1:84012192-84012211 | Msa0381760:intron | 50.0% | |
| AGAAGCTTGGGAAGGGTAAC+TGG | - | chr3_1:84012199-84012218 | Msa0381760:intron | 50.0% | |
| CAGGTGGGATGTGAAAAACC+AGG | - | chr3_1:84012455-84012474 | Msa0381760:intron | 50.0% | |
| TGAGGATGAGAAAGCCACTG+AGG | + | chr3_1:84012545-84012564 | None:intergenic | 50.0% | |
| CTTGGGAAGGGTAACTGGAG+AGG | - | chr3_1:84012204-84012223 | Msa0381760:intron | 55.0% | |
| ! | GCATGACTAGCTACCTGGGT+TGG | + | chr3_1:84012261-84012280 | None:intergenic | 55.0% |
| CTTGGGAAGGGTAACTGGAG+AGG | - | chr3_1:84012204-84012223 | Msa0381760:intron | 55.0% | |
| ! | GCATGACTAGCTACCTGGGT+TGG | + | chr3_1:84012261-84012280 | None:intergenic | 55.0% |
| ! | AAGAGGTCCGCGATGATGGC+AGG | + | chr3_1:84011720-84011739 | None:intergenic | 60.0% |
| ATCAGGTATGCCGTGGACCG+AGG | - | chr3_1:84012146-84012165 | Msa0381760:intron | 60.0% | |
| ATGTGCTCCTCCTCGGTCCA+CGG | + | chr3_1:84012159-84012178 | None:intergenic | 60.0% | |
| ! | AAGAGGTCCGCGATGATGGC+AGG | + | chr3_1:84011720-84011739 | None:intergenic | 60.0% |
| ATCAGGTATGCCGTGGACCG+AGG | - | chr3_1:84012146-84012165 | Msa0381760:intron | 60.0% | |
| ATGTGCTCCTCCTCGGTCCA+CGG | + | chr3_1:84012159-84012178 | None:intergenic | 60.0% | |
| AGGTATGCCGTGGACCGAGG+AGG | - | chr3_1:84012149-84012168 | Msa0381760:intron | 65.0% | |
| AGGTATGCCGTGGACCGAGG+AGG | - | chr3_1:84012149-84012168 | Msa0381760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84011574 | 84012694 | 84011574 | ID=Msa0381760;Name=Msa0381760 |
| chr3_1 | mRNA | 84011574 | 84012694 | 84011574 | ID=Msa0381760-mRNA-1;Parent=Msa0381760;Name=Msa0381760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.5|0.33|3|0|219 |
| chr3_1 | exon | 84012475 | 84012694 | 84012475 | ID=Msa0381760-mRNA-1:exon:21771;Parent=Msa0381760-mRNA-1 |
| chr3_1 | exon | 84011915 | 84012117 | 84011915 | ID=Msa0381760-mRNA-1:exon:21770;Parent=Msa0381760-mRNA-1 |
| chr3_1 | exon | 84011574 | 84011810 | 84011574 | ID=Msa0381760-mRNA-1:exon:21769;Parent=Msa0381760-mRNA-1 |
| chr3_1 | CDS | 84012475 | 84012694 | 84012475 | ID=Msa0381760-mRNA-1:cds;Parent=Msa0381760-mRNA-1 |
| chr3_1 | CDS | 84011915 | 84012117 | 84011915 | ID=Msa0381760-mRNA-1:cds;Parent=Msa0381760-mRNA-1 |
| chr3_1 | CDS | 84011574 | 84011810 | 84011574 | ID=Msa0381760-mRNA-1:cds;Parent=Msa0381760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
