AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0186800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186800 MtrunA17_Chr3g0135671 88.261 230 11 1 1 214 1 230 5.08e-146 406
Msa0186800 MtrunA17_Chr6g0488471 42.857 182 72 7 3 157 1 177 7.94e-33 120
Msa0186800 MtrunA17_Chr4g0055931 37.705 183 88 3 3 162 1 180 4.18e-30 113
Msa0186800 MtrunA17_Chr5g0415191 43.421 152 53 5 1 122 1 149 9.72e-28 107
Msa0186800 MtrunA17_Chr8g0389241 41.040 173 68 4 5 146 4 173 5.94e-27 104
Msa0186800 MtrunA17_Chr2g0331031 62.857 70 23 1 70 139 104 170 2.51e-23 95.9
Msa0186800 MtrunA17_Chr1g0210471 62.162 74 26 1 61 134 110 181 4.40e-23 93.2
Msa0186800 MtrunA17_Chr5g0429521 48.039 102 46 2 70 171 127 221 9.34e-23 93.6
Msa0186800 MtrunA17_Chr5g0436501 47.959 98 41 2 35 128 87 178 3.86e-22 91.3
Msa0186800 MtrunA17_Chr3g0104071 54.217 83 31 2 70 152 142 217 2.11e-21 90.1
Msa0186800 MtrunA17_Chr7g0241761 64.062 64 23 0 70 133 135 198 3.43e-21 89.4
Msa0186800 MtrunA17_Chr4g0062741 54.795 73 30 1 70 142 133 202 9.33e-21 88.2
Msa0186800 MtrunA17_Chr4g0059701 69.231 52 16 0 70 121 79 130 1.17e-20 87.8
Msa0186800 MtrunA17_Chr1g0162081 52.381 84 37 2 70 153 117 197 3.68e-20 86.7
Msa0186800 MtrunA17_Chr5g0409841 41.322 121 60 4 51 163 66 183 4.32e-20 85.1
Msa0186800 MtrunA17_Chr5g0440731 52.239 67 32 0 74 140 104 170 1.99e-19 84.3
Msa0186800 MtrunA17_Chr5g0440741 54.688 64 29 0 77 140 102 165 2.56e-19 84.0
Msa0186800 MtrunA17_Chr6g0452791 68.750 48 15 0 75 122 80 127 5.94e-19 80.5
Msa0186800 MtrunA17_Chr3g0092621 59.322 59 24 0 75 133 84 142 1.44e-18 79.7
Msa0186800 MtrunA17_Chr5g0409831 48.684 76 33 2 51 122 51 124 4.34e-16 74.3
Msa0186800 MtrunA17_Chr1g0192061 46.479 71 37 1 71 141 57 126 4.93e-14 67.8
Msa0186800 MtrunA17_Chr5g0432941 47.945 73 37 1 52 124 90 161 9.19e-13 65.1
Msa0186800 MtrunA17_Chr3g0113121 48.571 70 32 1 77 142 97 166 1.11e-12 64.7
Msa0186800 MtrunA17_Chr5g0432921 64.583 48 16 1 77 124 115 161 1.16e-12 64.7
Msa0186800 MtrunA17_Chr8g0365011 42.353 85 35 2 72 142 89 173 8.61e-12 63.2
Msa0186800 MtrunA17_Chr8g0364731 50.769 65 31 1 84 148 10 73 6.68e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186800 AT5G56840.1 39.013 223 114 5 3 207 1 219 1.22e-32 118
Msa0186800 AT5G61620.1 39.884 173 73 5 1 145 6 175 3.68e-28 108
Msa0186800 AT5G47390.1 33.745 243 99 7 3 215 1 211 1.55e-27 107
Msa0186800 AT1G70000.1 39.310 145 63 3 3 122 1 145 1.50e-24 97.8
Msa0186800 AT1G70000.2 39.310 145 63 3 3 122 1 145 1.50e-24 97.8
Msa0186800 AT2G38090.1 62.500 64 24 0 70 133 136 199 1.21e-21 90.9
Msa0186800 AT5G58900.1 54.545 77 35 0 70 146 136 212 1.41e-21 90.5
Msa0186800 AT5G01200.1 60.938 64 25 0 70 133 141 204 2.53e-21 89.4
Msa0186800 AT5G04760.1 48.421 95 43 2 61 151 85 177 7.54e-21 87.0
Msa0186800 AT1G49010.1 55.263 76 31 2 67 142 126 198 8.65e-21 89.0
Msa0186800 AT3G16350.1 69.811 53 16 0 70 122 132 184 1.09e-20 89.4
Msa0186800 AT1G74840.2 52.000 75 36 0 47 121 68 142 1.03e-19 84.7
Msa0186800 AT5G08520.1 54.795 73 30 2 70 142 113 182 1.45e-19 85.1
Msa0186800 AT1G74840.1 52.000 75 36 0 47 121 68 142 1.64e-19 84.7
Msa0186800 AT3G11280.2 58.824 68 27 1 67 133 118 185 3.89e-19 83.6
Msa0186800 AT3G11280.1 58.824 68 27 1 67 133 118 185 3.89e-19 83.6
Msa0186800 AT5G05790.2 63.333 60 22 0 74 133 130 189 1.24e-18 82.4
Msa0186800 AT5G05790.1 63.333 60 22 0 74 133 130 189 1.24e-18 82.4
Msa0186800 AT4G09450.1 48.837 86 41 2 68 151 84 168 2.37e-18 80.1
Msa0186800 AT1G19000.2 70.213 47 14 0 75 121 102 148 3.65e-18 81.3
Msa0186800 AT1G19000.1 70.213 47 14 0 75 121 102 148 3.65e-18 81.3
Msa0186800 AT3G10580.2 52.239 67 27 1 74 140 94 155 1.52e-17 79.0
Msa0186800 AT3G10580.1 52.239 67 27 1 74 140 94 155 2.25e-17 79.0
Msa0186800 AT5G23650.1 63.830 47 17 0 75 121 120 166 2.10e-12 65.5
Msa0186800 AT3G10590.1 41.758 91 52 1 76 165 112 202 2.42e-12 63.9

Find 48 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCTTGCCTACCATGTT+TGG 0.292024 2_1:+1564140 Msa0186800:CDS
AGAAGCTTGGGAAGGGTAAC+TGG 0.328316 2_1:+1564588 Msa0186800:CDS
CATGCCTCTGTTAGCTCTAA+TGG 0.334233 2_1:-1565051 None:intergenic
CTTCATATTTGCCCACAAAA+AGG 0.340381 2_1:+1564066 Msa0186800:CDS
CTTATGCAGCTGATATCATT+TGG 0.348494 2_1:-1564880 None:intergenic
TTTGTGCATGACTAGCTACC+TGG 0.362976 2_1:-1564652 None:intergenic
TTTGGAGTCAAATTTATTCC+TGG 0.373119 2_1:-1564862 None:intergenic
AATTTCTACTTCCACTTAGT+TGG 0.375503 2_1:-1564903 None:intergenic
TGCTCATATTGTGGAAACTT+TGG 0.380840 2_1:+1563981 Msa0186800:CDS
GAAACTTTGGTCACAATTCA+AGG 0.408806 2_1:+1563994 Msa0186800:CDS
CTCAACATTCAATACTGAAA+TGG 0.409371 2_1:+1564950 Msa0186800:CDS
CTTAGAGGACTTGAGAAGCT+TGG 0.418302 2_1:+1564575 Msa0186800:CDS
TCCGTTGATGTTGAAGAGTT+AGG 0.422454 2_1:-1564973 None:intergenic
TTAGAGGACTTGAGAAGCTT+GGG 0.428690 2_1:+1564576 Msa0186800:CDS
GCAAGTTTGAGTTCTAAATC+AGG 0.432705 2_1:-1565018 None:intergenic
GAGCACATGATATTTCTTAG+AGG 0.438938 2_1:+1564560 Msa0186800:CDS
GATAAAGAGGTCCGCGATGA+TGG 0.481364 2_1:-1564110 None:intergenic
CTCTGTTAGCTCTAATGGCA+TGG 0.487511 2_1:-1565046 None:intergenic
TATAAGAAATGAGAATAGCT+AGG 0.489637 2_1:+1563955 None:intergenic
TTACATAATGGAGGCTAAGA+TGG 0.500282 2_1:-1564724 None:intergenic
AAGAGGTCCGCGATGATGGC+AGG 0.511716 2_1:-1564106 None:intergenic
AAATCAGGTGCTGCACTATG+AGG 0.523156 2_1:-1565003 None:intergenic
TCTGTTAGCTCTAATGGCAT+GGG 0.534114 2_1:-1565045 None:intergenic
TGATCAAGCTATTCTGAGAC+TGG 0.538315 2_1:-1564688 None:intergenic
ACACTACTGGTTAGCTTAAG+GGG 0.538405 2_1:-1565076 None:intergenic
GGAGGAGGCTATTGATAAAG+AGG 0.539005 2_1:-1564123 None:intergenic
GCTAGGAAATGCTCATATTG+TGG 0.540745 2_1:+1563972 Msa0186800:CDS
TTGTGCATGACTAGCTACCT+GGG 0.547274 2_1:-1564651 None:intergenic
TTAATTTACTTACATAATGG+AGG 0.564586 2_1:-1564733 None:intergenic
TCATTTGAACCAAACATGGT+AGG 0.568762 2_1:-1564149 None:intergenic
GGACTTGAGAAGCTTGGGAA+GGG 0.571874 2_1:+1564581 Msa0186800:CDS
ATGTGCTCCTCCTCGGTCCA+CGG 0.572063 2_1:-1564545 None:intergenic
GCCTAACTCTTCAACATCAA+CGG 0.576928 2_1:+1564972 Msa0186800:CDS
CATTTCAGTATTGAATGTTG+AGG 0.583001 2_1:-1564949 None:intergenic
AGCTGCATAAGCCAACTAAG+TGG 0.584599 2_1:+1564892 Msa0186800:CDS
AAATATCATGTGCTCCTCCT+CGG 0.585344 2_1:-1564552 None:intergenic
AGGACTTGAGAAGCTTGGGA+AGG 0.598172 2_1:+1564580 Msa0186800:CDS
TGAACCAAACATGGTAGGCA+AGG 0.600769 2_1:-1564144 None:intergenic
ATCAGGTATGCCGTGGACCG+AGG 0.606863 2_1:+1564535 Msa0186800:intron
GCATGACTAGCTACCTGGGT+TGG 0.613754 2_1:-1564647 None:intergenic
AAACATGGTAGGCAAGGAGG+AGG 0.626173 2_1:-1564138 None:intergenic
CTTGGGAAGGGTAACTGGAG+AGG 0.645821 2_1:+1564593 Msa0186800:CDS
ACCAAACATGGTAGGCAAGG+AGG 0.664492 2_1:-1564141 None:intergenic
AGGTATGCCGTGGACCGAGG+AGG 0.665092 2_1:+1564538 Msa0186800:intron
TCAAGCTATTCTGAGACTGG+CGG 0.679211 2_1:-1564685 None:intergenic
TGAGGATGAGAAAGCCACTG+AGG 0.730112 2_1:-1564931 None:intergenic
CATGCCATTAGAGCTAACAG+AGG 0.740508 2_1:+1565047 Msa0186800:CDS
AGAACTACCTGCCATCATCG+CGG 0.745192 2_1:+1564099 Msa0186800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATTTACTTACATAA+TGG - chr2_1:1564739-1564758 None:intergenic 10.0%
!! AAATTAAATATAGAATAAGA+TGG - chr2_1:1564822-1564841 None:intergenic 10.0%
!! ATCTTATTCTATATTTAATT+TGG + chr2_1:1564821-1564840 Msa0186800:intron 10.0%
!!! ATTTTAATTTACTTACATAA+TGG - chr2_1:1564739-1564758 None:intergenic 10.0%
!! AAATTAAATATAGAATAAGA+TGG - chr2_1:1564822-1564841 None:intergenic 10.0%
!! ATCTTATTCTATATTTAATT+TGG + chr2_1:1564821-1564840 Msa0186800:intron 10.0%
!!! TAATTATAACCTTTTTTACT+GGG - chr2_1:1564221-1564240 None:intergenic 15.0%
!!! ATAATTATAACCTTTTTTAC+TGG - chr2_1:1564222-1564241 None:intergenic 15.0%
!!! AATTAAAGAAGTTTAAAGTA+AGG - chr2_1:1564795-1564814 None:intergenic 15.0%
!!! TAATTATAACCTTTTTTACT+GGG - chr2_1:1564221-1564240 None:intergenic 15.0%
!!! ATAATTATAACCTTTTTTAC+TGG - chr2_1:1564222-1564241 None:intergenic 15.0%
!!! AATTAAAGAAGTTTAAAGTA+AGG - chr2_1:1564795-1564814 None:intergenic 15.0%
!! TTAATTTACTTACATAATGG+AGG - chr2_1:1564736-1564755 None:intergenic 20.0%
!!! TATTCTATATTTAATTTGGC+AGG + chr2_1:1564825-1564844 Msa0186800:intron 20.0%
!! TTAATTTACTTACATAATGG+AGG - chr2_1:1564736-1564755 None:intergenic 20.0%
!!! TATTCTATATTTAATTTGGC+AGG + chr2_1:1564825-1564844 Msa0186800:intron 20.0%
!! ATTTTCATTTGAACCAAACA+TGG - chr2_1:1564156-1564175 None:intergenic 25.0%
! TGAATCCAAAATTCAAAATC+TGG + chr2_1:1564300-1564319 Msa0186800:intron 25.0%
! TCCAACTAATGAGAAAATTA+AGG + chr2_1:1564340-1564359 Msa0186800:intron 25.0%
!! TCCTTAATTTTCTCATTAGT+TGG - chr2_1:1564344-1564363 None:intergenic 25.0%
!!! ATGTACATTTTTTTGTGATC+AGG + chr2_1:1564518-1564537 Msa0186800:intron 25.0%
!!! TGCACGTAACTATTTTTATA+TGG - chr2_1:1564768-1564787 None:intergenic 25.0%
!! ATTTTCATTTGAACCAAACA+TGG - chr2_1:1564156-1564175 None:intergenic 25.0%
! TGAATCCAAAATTCAAAATC+TGG + chr2_1:1564300-1564319 Msa0186800:intron 25.0%
! TCCAACTAATGAGAAAATTA+AGG + chr2_1:1564340-1564359 Msa0186800:intron 25.0%
!! TCCTTAATTTTCTCATTAGT+TGG - chr2_1:1564344-1564363 None:intergenic 25.0%
!!! ATGTACATTTTTTTGTGATC+AGG + chr2_1:1564518-1564537 Msa0186800:intron 25.0%
!!! TGCACGTAACTATTTTTATA+TGG - chr2_1:1564768-1564787 None:intergenic 25.0%
!!! TTTCTGAAACTCCTTTTTGT+GGG - chr2_1:1564080-1564099 None:intergenic 30.0%
TGATATATGCTCGTTTCTTA+CGG - chr2_1:1564189-1564208 None:intergenic 30.0%
!! AGTTTTGTGAGGGTTAAATT+AGG + chr2_1:1564276-1564295 Msa0186800:intron 30.0%
TAGAATTGTGAATTGTTGCT+TGG + chr2_1:1564479-1564498 Msa0186800:intron 30.0%
!! TCTATATTTAATTTGGCAGG+TGG + chr2_1:1564828-1564847 Msa0186800:intron 30.0%
!! CTATATTTAATTTGGCAGGT+GGG + chr2_1:1564829-1564848 Msa0186800:intron 30.0%
! TTTGGAGTCAAATTTATTCC+TGG - chr2_1:1564865-1564884 None:intergenic 30.0%
AATTTCTACTTCCACTTAGT+TGG - chr2_1:1564906-1564925 None:intergenic 30.0%
! CATTTCAGTATTGAATGTTG+AGG - chr2_1:1564952-1564971 None:intergenic 30.0%
CTCAACATTCAATACTGAAA+TGG + chr2_1:1564950-1564969 Msa0186800:CDS 30.0%
!!! TTTCTGAAACTCCTTTTTGT+GGG - chr2_1:1564080-1564099 None:intergenic 30.0%
TGATATATGCTCGTTTCTTA+CGG - chr2_1:1564189-1564208 None:intergenic 30.0%
!! AGTTTTGTGAGGGTTAAATT+AGG + chr2_1:1564276-1564295 Msa0186800:intron 30.0%
TAGAATTGTGAATTGTTGCT+TGG + chr2_1:1564479-1564498 Msa0186800:intron 30.0%
!! TCTATATTTAATTTGGCAGG+TGG + chr2_1:1564828-1564847 Msa0186800:intron 30.0%
!! CTATATTTAATTTGGCAGGT+GGG + chr2_1:1564829-1564848 Msa0186800:intron 30.0%
! TTTGGAGTCAAATTTATTCC+TGG - chr2_1:1564865-1564884 None:intergenic 30.0%
AATTTCTACTTCCACTTAGT+TGG - chr2_1:1564906-1564925 None:intergenic 30.0%
! CATTTCAGTATTGAATGTTG+AGG - chr2_1:1564952-1564971 None:intergenic 30.0%
CTCAACATTCAATACTGAAA+TGG + chr2_1:1564950-1564969 Msa0186800:CDS 30.0%
TGCTCATATTGTGGAAACTT+TGG + chr2_1:1563981-1564000 Msa0186800:CDS 35.0%
GAAACTTTGGTCACAATTCA+AGG + chr2_1:1563994-1564013 Msa0186800:CDS 35.0%
! CTTTTTGTGGGCAAATATGA+AGG - chr2_1:1564068-1564087 None:intergenic 35.0%
CTTCATATTTGCCCACAAAA+AGG + chr2_1:1564066-1564085 Msa0186800:CDS 35.0%
!!! CTTTCTGAAACTCCTTTTTG+TGG - chr2_1:1564081-1564100 None:intergenic 35.0%
TCATTTGAACCAAACATGGT+AGG - chr2_1:1564152-1564171 None:intergenic 35.0%
ACAATCAGACCCAGTAAAAA+AGG + chr2_1:1564209-1564228 Msa0186800:intron 35.0%
!! CTTACAGATCAGTTTTGTGA+GGG + chr2_1:1564266-1564285 Msa0186800:intron 35.0%
! CTTGGCCAGATTTTGAATTT+TGG - chr2_1:1564308-1564327 None:intergenic 35.0%
GAGCACATGATATTTCTTAG+AGG + chr2_1:1564560-1564579 Msa0186800:CDS 35.0%
! TTACATAATGGAGGCTAAGA+TGG - chr2_1:1564727-1564746 None:intergenic 35.0%
CTTATGCAGCTGATATCATT+TGG - chr2_1:1564883-1564902 None:intergenic 35.0%
! GTAGAAATTTTCTTCCTCAG+TGG + chr2_1:1564917-1564936 Msa0186800:CDS 35.0%
!! GCAAGTTTGAGTTCTAAATC+AGG - chr2_1:1565021-1565040 None:intergenic 35.0%
TGCTCATATTGTGGAAACTT+TGG + chr2_1:1563981-1564000 Msa0186800:CDS 35.0%
GAAACTTTGGTCACAATTCA+AGG + chr2_1:1563994-1564013 Msa0186800:CDS 35.0%
! CTTTTTGTGGGCAAATATGA+AGG - chr2_1:1564068-1564087 None:intergenic 35.0%
CTTCATATTTGCCCACAAAA+AGG + chr2_1:1564066-1564085 Msa0186800:CDS 35.0%
!!! CTTTCTGAAACTCCTTTTTG+TGG - chr2_1:1564081-1564100 None:intergenic 35.0%
TCATTTGAACCAAACATGGT+AGG - chr2_1:1564152-1564171 None:intergenic 35.0%
ACAATCAGACCCAGTAAAAA+AGG + chr2_1:1564209-1564228 Msa0186800:intron 35.0%
!! CTTACAGATCAGTTTTGTGA+GGG + chr2_1:1564266-1564285 Msa0186800:intron 35.0%
! CTTGGCCAGATTTTGAATTT+TGG - chr2_1:1564308-1564327 None:intergenic 35.0%
GAGCACATGATATTTCTTAG+AGG + chr2_1:1564560-1564579 Msa0186800:CDS 35.0%
! TTACATAATGGAGGCTAAGA+TGG - chr2_1:1564727-1564746 None:intergenic 35.0%
CTTATGCAGCTGATATCATT+TGG - chr2_1:1564883-1564902 None:intergenic 35.0%
! GTAGAAATTTTCTTCCTCAG+TGG + chr2_1:1564917-1564936 Msa0186800:CDS 35.0%
!! GCAAGTTTGAGTTCTAAATC+AGG - chr2_1:1565021-1565040 None:intergenic 35.0%
GCTAGGAAATGCTCATATTG+TGG + chr2_1:1563972-1563991 Msa0186800:CDS 40.0%
CCTCACAAAACTGATCTGTA+AGG - chr2_1:1564268-1564287 None:intergenic 40.0%
!! CCTTACAGATCAGTTTTGTG+AGG + chr2_1:1564265-1564284 Msa0186800:intron 40.0%
AAATATCATGTGCTCCTCCT+CGG - chr2_1:1564555-1564574 None:intergenic 40.0%
TTAGAGGACTTGAGAAGCTT+GGG + chr2_1:1564576-1564595 Msa0186800:CDS 40.0%
AACAACAAAAACACCAACCC+AGG + chr2_1:1564634-1564653 Msa0186800:CDS 40.0%
!! TGATCAAGCTATTCTGAGAC+TGG - chr2_1:1564691-1564710 None:intergenic 40.0%
GCCTAACTCTTCAACATCAA+CGG + chr2_1:1564972-1564991 Msa0186800:CDS 40.0%
TCCGTTGATGTTGAAGAGTT+AGG - chr2_1:1564976-1564995 None:intergenic 40.0%
!! TCTGTTAGCTCTAATGGCAT+GGG - chr2_1:1565048-1565067 None:intergenic 40.0%
GCTAGGAAATGCTCATATTG+TGG + chr2_1:1563972-1563991 Msa0186800:CDS 40.0%
CCTCACAAAACTGATCTGTA+AGG - chr2_1:1564268-1564287 None:intergenic 40.0%
!! CCTTACAGATCAGTTTTGTG+AGG + chr2_1:1564265-1564284 Msa0186800:intron 40.0%
AAATATCATGTGCTCCTCCT+CGG - chr2_1:1564555-1564574 None:intergenic 40.0%
TTAGAGGACTTGAGAAGCTT+GGG + chr2_1:1564576-1564595 Msa0186800:CDS 40.0%
AACAACAAAAACACCAACCC+AGG + chr2_1:1564634-1564653 Msa0186800:CDS 40.0%
!! TGATCAAGCTATTCTGAGAC+TGG - chr2_1:1564691-1564710 None:intergenic 40.0%
GCCTAACTCTTCAACATCAA+CGG + chr2_1:1564972-1564991 Msa0186800:CDS 40.0%
TCCGTTGATGTTGAAGAGTT+AGG - chr2_1:1564976-1564995 None:intergenic 40.0%
!! TCTGTTAGCTCTAATGGCAT+GGG - chr2_1:1565048-1565067 None:intergenic 40.0%
GGAGGAGGCTATTGATAAAG+AGG - chr2_1:1564126-1564145 None:intergenic 45.0%
TGAACCAAACATGGTAGGCA+AGG - chr2_1:1564147-1564166 None:intergenic 45.0%
! GTTGGAGCATTCACTTCACT+TGG - chr2_1:1564326-1564345 None:intergenic 45.0%
! TTTTGTGATCAGGTATGCCG+TGG + chr2_1:1564528-1564547 Msa0186800:intron 45.0%
CTTAGAGGACTTGAGAAGCT+TGG + chr2_1:1564575-1564594 Msa0186800:CDS 45.0%
! TTGTGCATGACTAGCTACCT+GGG - chr2_1:1564654-1564673 None:intergenic 45.0%
! TTTGTGCATGACTAGCTACC+TGG - chr2_1:1564655-1564674 None:intergenic 45.0%
!! TCAAGCTATTCTGAGACTGG+CGG - chr2_1:1564688-1564707 None:intergenic 45.0%
AGCTGCATAAGCCAACTAAG+TGG + chr2_1:1564892-1564911 Msa0186800:CDS 45.0%
! AAATCAGGTGCTGCACTATG+AGG - chr2_1:1565006-1565025 None:intergenic 45.0%
!! CTCTGTTAGCTCTAATGGCA+TGG - chr2_1:1565049-1565068 None:intergenic 45.0%
CATGCCATTAGAGCTAACAG+AGG + chr2_1:1565047-1565066 Msa0186800:CDS 45.0%
!! CATGCCTCTGTTAGCTCTAA+TGG - chr2_1:1565054-1565073 None:intergenic 45.0%
GGAGGAGGCTATTGATAAAG+AGG - chr2_1:1564126-1564145 None:intergenic 45.0%
TGAACCAAACATGGTAGGCA+AGG - chr2_1:1564147-1564166 None:intergenic 45.0%
! GTTGGAGCATTCACTTCACT+TGG - chr2_1:1564326-1564345 None:intergenic 45.0%
! TTTTGTGATCAGGTATGCCG+TGG + chr2_1:1564528-1564547 Msa0186800:intron 45.0%
CTTAGAGGACTTGAGAAGCT+TGG + chr2_1:1564575-1564594 Msa0186800:CDS 45.0%
! TTGTGCATGACTAGCTACCT+GGG - chr2_1:1564654-1564673 None:intergenic 45.0%
! TTTGTGCATGACTAGCTACC+TGG - chr2_1:1564655-1564674 None:intergenic 45.0%
!! TCAAGCTATTCTGAGACTGG+CGG - chr2_1:1564688-1564707 None:intergenic 45.0%
AGCTGCATAAGCCAACTAAG+TGG + chr2_1:1564892-1564911 Msa0186800:CDS 45.0%
! AAATCAGGTGCTGCACTATG+AGG - chr2_1:1565006-1565025 None:intergenic 45.0%
!! CTCTGTTAGCTCTAATGGCA+TGG - chr2_1:1565049-1565068 None:intergenic 45.0%
CATGCCATTAGAGCTAACAG+AGG + chr2_1:1565047-1565066 Msa0186800:CDS 45.0%
!! CATGCCTCTGTTAGCTCTAA+TGG - chr2_1:1565054-1565073 None:intergenic 45.0%
AGAACTACCTGCCATCATCG+CGG + chr2_1:1564099-1564118 Msa0186800:CDS 50.0%
GATAAAGAGGTCCGCGATGA+TGG - chr2_1:1564113-1564132 None:intergenic 50.0%
AAACATGGTAGGCAAGGAGG+AGG - chr2_1:1564141-1564160 None:intergenic 50.0%
TCCTCCTTGCCTACCATGTT+TGG + chr2_1:1564140-1564159 Msa0186800:CDS 50.0%
ACCAAACATGGTAGGCAAGG+AGG - chr2_1:1564144-1564163 None:intergenic 50.0%
AGGACTTGAGAAGCTTGGGA+AGG + chr2_1:1564580-1564599 Msa0186800:CDS 50.0%
GGACTTGAGAAGCTTGGGAA+GGG + chr2_1:1564581-1564600 Msa0186800:CDS 50.0%
AGAAGCTTGGGAAGGGTAAC+TGG + chr2_1:1564588-1564607 Msa0186800:CDS 50.0%
CAGGTGGGATGTGAAAAACC+AGG + chr2_1:1564844-1564863 Msa0186800:intron 50.0%
TGAGGATGAGAAAGCCACTG+AGG - chr2_1:1564934-1564953 None:intergenic 50.0%
AGAACTACCTGCCATCATCG+CGG + chr2_1:1564099-1564118 Msa0186800:CDS 50.0%
GATAAAGAGGTCCGCGATGA+TGG - chr2_1:1564113-1564132 None:intergenic 50.0%
AAACATGGTAGGCAAGGAGG+AGG - chr2_1:1564141-1564160 None:intergenic 50.0%
TCCTCCTTGCCTACCATGTT+TGG + chr2_1:1564140-1564159 Msa0186800:CDS 50.0%
ACCAAACATGGTAGGCAAGG+AGG - chr2_1:1564144-1564163 None:intergenic 50.0%
AGGACTTGAGAAGCTTGGGA+AGG + chr2_1:1564580-1564599 Msa0186800:CDS 50.0%
GGACTTGAGAAGCTTGGGAA+GGG + chr2_1:1564581-1564600 Msa0186800:CDS 50.0%
AGAAGCTTGGGAAGGGTAAC+TGG + chr2_1:1564588-1564607 Msa0186800:CDS 50.0%
CAGGTGGGATGTGAAAAACC+AGG + chr2_1:1564844-1564863 Msa0186800:intron 50.0%
TGAGGATGAGAAAGCCACTG+AGG - chr2_1:1564934-1564953 None:intergenic 50.0%
CTTGGGAAGGGTAACTGGAG+AGG + chr2_1:1564593-1564612 Msa0186800:CDS 55.0%
! GCATGACTAGCTACCTGGGT+TGG - chr2_1:1564650-1564669 None:intergenic 55.0%
CTTGGGAAGGGTAACTGGAG+AGG + chr2_1:1564593-1564612 Msa0186800:CDS 55.0%
! GCATGACTAGCTACCTGGGT+TGG - chr2_1:1564650-1564669 None:intergenic 55.0%
! AAGAGGTCCGCGATGATGGC+AGG - chr2_1:1564109-1564128 None:intergenic 60.0%
ATCAGGTATGCCGTGGACCG+AGG + chr2_1:1564535-1564554 Msa0186800:intron 60.0%
ATGTGCTCCTCCTCGGTCCA+CGG - chr2_1:1564548-1564567 None:intergenic 60.0%
! AAGAGGTCCGCGATGATGGC+AGG - chr2_1:1564109-1564128 None:intergenic 60.0%
ATCAGGTATGCCGTGGACCG+AGG + chr2_1:1564535-1564554 Msa0186800:intron 60.0%
ATGTGCTCCTCCTCGGTCCA+CGG - chr2_1:1564548-1564567 None:intergenic 60.0%
AGGTATGCCGTGGACCGAGG+AGG + chr2_1:1564538-1564557 Msa0186800:intron 65.0%
AGGTATGCCGTGGACCGAGG+AGG + chr2_1:1564538-1564557 Msa0186800:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 1563963 1565083 1563963 ID=Msa0186800;Name=Msa0186800
chr2_1 mRNA 1563963 1565083 1563963 ID=Msa0186800-mRNA-1;Parent=Msa0186800;Name=Msa0186800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.5|0.33|3|0|219
chr2_1 exon 1563963 1564182 1563963 ID=Msa0186800-mRNA-1:exon:618;Parent=Msa0186800-mRNA-1
chr2_1 exon 1564540 1564742 1564540 ID=Msa0186800-mRNA-1:exon:619;Parent=Msa0186800-mRNA-1
chr2_1 exon 1564847 1565083 1564847 ID=Msa0186800-mRNA-1:exon:620;Parent=Msa0186800-mRNA-1
chr2_1 CDS 1563963 1564182 1563963 ID=Msa0186800-mRNA-1:cds;Parent=Msa0186800-mRNA-1
chr2_1 CDS 1564540 1564742 1564540 ID=Msa0186800-mRNA-1:cds;Parent=Msa0186800-mRNA-1
chr2_1 CDS 1564847 1565083 1564847 ID=Msa0186800-mRNA-1:cds;Parent=Msa0186800-mRNA-1
Gene Sequence

>Msa0186800

ATGAGAATAGCTAGGAAATGCTCATATTGTGGAAACTTTGGTCACAATTCAAGGACTTGCAATAACAGTCTCAAAGAGCAATTTCATCTTTTTTCTTCTTCACCTTCATATTTGCCCACAAAAAGGAGTTTCAGAAAGAACTACCTGCCATCATCGCGGACCTCTTTATCAATAGCCTCCTCCTTGCCTACCATGTTTGGTTCAAATGAAAATTCAGATAGTATGCCGTGGACCGAGGAGGAGCACATGATATTTCTTAGAGGACTTGAGAAGCTTGGGAAGGGTAACTGGAGAGGTATATCTAGAGATTTTGTAACAACAAAAACACCAACCCAGGTAGCTAGTCATGCACAAAAACATTTTCTCCGCCAGTCTCAGAATAGCTTGATCAATAGAAGAAAACACCATCTTAGCCTCCATTATGTGGGATGTGAAAAACCAGGAATAAATTTGACTCCAAATGATATCAGCTGCATAAGCCAACTAAGTGGAAGTAGAAATTTTCTTCCTCAGTGGCTTTCTCATCCTCAACATTCAATACTGAAATGGCCTAACTCTTCAACATCAACGGATTGTACTCCTCATAGTGCAGCACCTGATTTAGAACTCAAACTTGCAACTCCCATGCCATTAGAGCTAACAGAGGCATGCTCCCCTTAA

Protein sequence

>Msa0186800

MRIARKCSYCGNFGHNSRTCNNSLKEQFHLFSSSPSYLPTKRSFRKNYLPSSRTSLSIASSLPTMFGSNENSDSMPWTEEEHMIFLRGLEKLGKGNWRGISRDFVTTKTPTQVASHAQKHFLRQSQNSLINRRKHHLSLHYVGCEKPGINLTPNDISCISQLSGSRNFLPQWLSHPQHSILKWPNSSTSTDCTPHSAAPDLELKLATPMPLELTEACSP*