Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186800 | XP_003603145.1 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 5.52e-142 | 406 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186800 | sp|Q7XC57|MYBS3_ORYSJ | 36.923 | 195 | 90 | 4 | 3 | 176 | 1 | 183 | 3.08e-27 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186800 | G7J7M5 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 2.64e-142 | 406 |
Gene ID | Type | Classification |
---|---|---|
Msa0186800 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0140490 | Msa0186800 | 0.975279 | 1.156487e-139 | -8.615850e-47 |
Msa0186800 | Msa0381760 | 0.814480 | 1.507754e-51 | -8.615850e-47 |
Msa0186800 | Msa1383440 | 0.964789 | 9.021466e-124 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186800 | MtrunA17_Chr3g0135671 | 88.261 | 230 | 11 | 1 | 1 | 214 | 1 | 230 | 5.08e-146 | 406 |
Msa0186800 | MtrunA17_Chr6g0488471 | 42.857 | 182 | 72 | 7 | 3 | 157 | 1 | 177 | 7.94e-33 | 120 |
Msa0186800 | MtrunA17_Chr4g0055931 | 37.705 | 183 | 88 | 3 | 3 | 162 | 1 | 180 | 4.18e-30 | 113 |
Msa0186800 | MtrunA17_Chr5g0415191 | 43.421 | 152 | 53 | 5 | 1 | 122 | 1 | 149 | 9.72e-28 | 107 |
Msa0186800 | MtrunA17_Chr8g0389241 | 41.040 | 173 | 68 | 4 | 5 | 146 | 4 | 173 | 5.94e-27 | 104 |
Msa0186800 | MtrunA17_Chr2g0331031 | 62.857 | 70 | 23 | 1 | 70 | 139 | 104 | 170 | 2.51e-23 | 95.9 |
Msa0186800 | MtrunA17_Chr1g0210471 | 62.162 | 74 | 26 | 1 | 61 | 134 | 110 | 181 | 4.40e-23 | 93.2 |
Msa0186800 | MtrunA17_Chr5g0429521 | 48.039 | 102 | 46 | 2 | 70 | 171 | 127 | 221 | 9.34e-23 | 93.6 |
Msa0186800 | MtrunA17_Chr5g0436501 | 47.959 | 98 | 41 | 2 | 35 | 128 | 87 | 178 | 3.86e-22 | 91.3 |
Msa0186800 | MtrunA17_Chr3g0104071 | 54.217 | 83 | 31 | 2 | 70 | 152 | 142 | 217 | 2.11e-21 | 90.1 |
Msa0186800 | MtrunA17_Chr7g0241761 | 64.062 | 64 | 23 | 0 | 70 | 133 | 135 | 198 | 3.43e-21 | 89.4 |
Msa0186800 | MtrunA17_Chr4g0062741 | 54.795 | 73 | 30 | 1 | 70 | 142 | 133 | 202 | 9.33e-21 | 88.2 |
Msa0186800 | MtrunA17_Chr4g0059701 | 69.231 | 52 | 16 | 0 | 70 | 121 | 79 | 130 | 1.17e-20 | 87.8 |
Msa0186800 | MtrunA17_Chr1g0162081 | 52.381 | 84 | 37 | 2 | 70 | 153 | 117 | 197 | 3.68e-20 | 86.7 |
Msa0186800 | MtrunA17_Chr5g0409841 | 41.322 | 121 | 60 | 4 | 51 | 163 | 66 | 183 | 4.32e-20 | 85.1 |
Msa0186800 | MtrunA17_Chr5g0440731 | 52.239 | 67 | 32 | 0 | 74 | 140 | 104 | 170 | 1.99e-19 | 84.3 |
Msa0186800 | MtrunA17_Chr5g0440741 | 54.688 | 64 | 29 | 0 | 77 | 140 | 102 | 165 | 2.56e-19 | 84.0 |
Msa0186800 | MtrunA17_Chr6g0452791 | 68.750 | 48 | 15 | 0 | 75 | 122 | 80 | 127 | 5.94e-19 | 80.5 |
Msa0186800 | MtrunA17_Chr3g0092621 | 59.322 | 59 | 24 | 0 | 75 | 133 | 84 | 142 | 1.44e-18 | 79.7 |
Msa0186800 | MtrunA17_Chr5g0409831 | 48.684 | 76 | 33 | 2 | 51 | 122 | 51 | 124 | 4.34e-16 | 74.3 |
Msa0186800 | MtrunA17_Chr1g0192061 | 46.479 | 71 | 37 | 1 | 71 | 141 | 57 | 126 | 4.93e-14 | 67.8 |
Msa0186800 | MtrunA17_Chr5g0432941 | 47.945 | 73 | 37 | 1 | 52 | 124 | 90 | 161 | 9.19e-13 | 65.1 |
Msa0186800 | MtrunA17_Chr3g0113121 | 48.571 | 70 | 32 | 1 | 77 | 142 | 97 | 166 | 1.11e-12 | 64.7 |
Msa0186800 | MtrunA17_Chr5g0432921 | 64.583 | 48 | 16 | 1 | 77 | 124 | 115 | 161 | 1.16e-12 | 64.7 |
Msa0186800 | MtrunA17_Chr8g0365011 | 42.353 | 85 | 35 | 2 | 72 | 142 | 89 | 173 | 8.61e-12 | 63.2 |
Msa0186800 | MtrunA17_Chr8g0364731 | 50.769 | 65 | 31 | 1 | 84 | 148 | 10 | 73 | 6.68e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186800 | AT5G56840.1 | 39.013 | 223 | 114 | 5 | 3 | 207 | 1 | 219 | 1.22e-32 | 118 |
Msa0186800 | AT5G61620.1 | 39.884 | 173 | 73 | 5 | 1 | 145 | 6 | 175 | 3.68e-28 | 108 |
Msa0186800 | AT5G47390.1 | 33.745 | 243 | 99 | 7 | 3 | 215 | 1 | 211 | 1.55e-27 | 107 |
Msa0186800 | AT1G70000.1 | 39.310 | 145 | 63 | 3 | 3 | 122 | 1 | 145 | 1.50e-24 | 97.8 |
Msa0186800 | AT1G70000.2 | 39.310 | 145 | 63 | 3 | 3 | 122 | 1 | 145 | 1.50e-24 | 97.8 |
Msa0186800 | AT2G38090.1 | 62.500 | 64 | 24 | 0 | 70 | 133 | 136 | 199 | 1.21e-21 | 90.9 |
Msa0186800 | AT5G58900.1 | 54.545 | 77 | 35 | 0 | 70 | 146 | 136 | 212 | 1.41e-21 | 90.5 |
Msa0186800 | AT5G01200.1 | 60.938 | 64 | 25 | 0 | 70 | 133 | 141 | 204 | 2.53e-21 | 89.4 |
Msa0186800 | AT5G04760.1 | 48.421 | 95 | 43 | 2 | 61 | 151 | 85 | 177 | 7.54e-21 | 87.0 |
Msa0186800 | AT1G49010.1 | 55.263 | 76 | 31 | 2 | 67 | 142 | 126 | 198 | 8.65e-21 | 89.0 |
Msa0186800 | AT3G16350.1 | 69.811 | 53 | 16 | 0 | 70 | 122 | 132 | 184 | 1.09e-20 | 89.4 |
Msa0186800 | AT1G74840.2 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.03e-19 | 84.7 |
Msa0186800 | AT5G08520.1 | 54.795 | 73 | 30 | 2 | 70 | 142 | 113 | 182 | 1.45e-19 | 85.1 |
Msa0186800 | AT1G74840.1 | 52.000 | 75 | 36 | 0 | 47 | 121 | 68 | 142 | 1.64e-19 | 84.7 |
Msa0186800 | AT3G11280.2 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.89e-19 | 83.6 |
Msa0186800 | AT3G11280.1 | 58.824 | 68 | 27 | 1 | 67 | 133 | 118 | 185 | 3.89e-19 | 83.6 |
Msa0186800 | AT5G05790.2 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.24e-18 | 82.4 |
Msa0186800 | AT5G05790.1 | 63.333 | 60 | 22 | 0 | 74 | 133 | 130 | 189 | 1.24e-18 | 82.4 |
Msa0186800 | AT4G09450.1 | 48.837 | 86 | 41 | 2 | 68 | 151 | 84 | 168 | 2.37e-18 | 80.1 |
Msa0186800 | AT1G19000.2 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.65e-18 | 81.3 |
Msa0186800 | AT1G19000.1 | 70.213 | 47 | 14 | 0 | 75 | 121 | 102 | 148 | 3.65e-18 | 81.3 |
Msa0186800 | AT3G10580.2 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 1.52e-17 | 79.0 |
Msa0186800 | AT3G10580.1 | 52.239 | 67 | 27 | 1 | 74 | 140 | 94 | 155 | 2.25e-17 | 79.0 |
Msa0186800 | AT5G23650.1 | 63.830 | 47 | 17 | 0 | 75 | 121 | 120 | 166 | 2.10e-12 | 65.5 |
Msa0186800 | AT3G10590.1 | 41.758 | 91 | 52 | 1 | 76 | 165 | 112 | 202 | 2.42e-12 | 63.9 |
Find 48 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCCTTGCCTACCATGTT+TGG | 0.292024 | 2_1:+1564140 | Msa0186800:CDS |
AGAAGCTTGGGAAGGGTAAC+TGG | 0.328316 | 2_1:+1564588 | Msa0186800:CDS |
CATGCCTCTGTTAGCTCTAA+TGG | 0.334233 | 2_1:-1565051 | None:intergenic |
CTTCATATTTGCCCACAAAA+AGG | 0.340381 | 2_1:+1564066 | Msa0186800:CDS |
CTTATGCAGCTGATATCATT+TGG | 0.348494 | 2_1:-1564880 | None:intergenic |
TTTGTGCATGACTAGCTACC+TGG | 0.362976 | 2_1:-1564652 | None:intergenic |
TTTGGAGTCAAATTTATTCC+TGG | 0.373119 | 2_1:-1564862 | None:intergenic |
AATTTCTACTTCCACTTAGT+TGG | 0.375503 | 2_1:-1564903 | None:intergenic |
TGCTCATATTGTGGAAACTT+TGG | 0.380840 | 2_1:+1563981 | Msa0186800:CDS |
GAAACTTTGGTCACAATTCA+AGG | 0.408806 | 2_1:+1563994 | Msa0186800:CDS |
CTCAACATTCAATACTGAAA+TGG | 0.409371 | 2_1:+1564950 | Msa0186800:CDS |
CTTAGAGGACTTGAGAAGCT+TGG | 0.418302 | 2_1:+1564575 | Msa0186800:CDS |
TCCGTTGATGTTGAAGAGTT+AGG | 0.422454 | 2_1:-1564973 | None:intergenic |
TTAGAGGACTTGAGAAGCTT+GGG | 0.428690 | 2_1:+1564576 | Msa0186800:CDS |
GCAAGTTTGAGTTCTAAATC+AGG | 0.432705 | 2_1:-1565018 | None:intergenic |
GAGCACATGATATTTCTTAG+AGG | 0.438938 | 2_1:+1564560 | Msa0186800:CDS |
GATAAAGAGGTCCGCGATGA+TGG | 0.481364 | 2_1:-1564110 | None:intergenic |
CTCTGTTAGCTCTAATGGCA+TGG | 0.487511 | 2_1:-1565046 | None:intergenic |
TATAAGAAATGAGAATAGCT+AGG | 0.489637 | 2_1:+1563955 | None:intergenic |
TTACATAATGGAGGCTAAGA+TGG | 0.500282 | 2_1:-1564724 | None:intergenic |
AAGAGGTCCGCGATGATGGC+AGG | 0.511716 | 2_1:-1564106 | None:intergenic |
AAATCAGGTGCTGCACTATG+AGG | 0.523156 | 2_1:-1565003 | None:intergenic |
TCTGTTAGCTCTAATGGCAT+GGG | 0.534114 | 2_1:-1565045 | None:intergenic |
TGATCAAGCTATTCTGAGAC+TGG | 0.538315 | 2_1:-1564688 | None:intergenic |
ACACTACTGGTTAGCTTAAG+GGG | 0.538405 | 2_1:-1565076 | None:intergenic |
GGAGGAGGCTATTGATAAAG+AGG | 0.539005 | 2_1:-1564123 | None:intergenic |
GCTAGGAAATGCTCATATTG+TGG | 0.540745 | 2_1:+1563972 | Msa0186800:CDS |
TTGTGCATGACTAGCTACCT+GGG | 0.547274 | 2_1:-1564651 | None:intergenic |
TTAATTTACTTACATAATGG+AGG | 0.564586 | 2_1:-1564733 | None:intergenic |
TCATTTGAACCAAACATGGT+AGG | 0.568762 | 2_1:-1564149 | None:intergenic |
GGACTTGAGAAGCTTGGGAA+GGG | 0.571874 | 2_1:+1564581 | Msa0186800:CDS |
ATGTGCTCCTCCTCGGTCCA+CGG | 0.572063 | 2_1:-1564545 | None:intergenic |
GCCTAACTCTTCAACATCAA+CGG | 0.576928 | 2_1:+1564972 | Msa0186800:CDS |
CATTTCAGTATTGAATGTTG+AGG | 0.583001 | 2_1:-1564949 | None:intergenic |
AGCTGCATAAGCCAACTAAG+TGG | 0.584599 | 2_1:+1564892 | Msa0186800:CDS |
AAATATCATGTGCTCCTCCT+CGG | 0.585344 | 2_1:-1564552 | None:intergenic |
AGGACTTGAGAAGCTTGGGA+AGG | 0.598172 | 2_1:+1564580 | Msa0186800:CDS |
TGAACCAAACATGGTAGGCA+AGG | 0.600769 | 2_1:-1564144 | None:intergenic |
ATCAGGTATGCCGTGGACCG+AGG | 0.606863 | 2_1:+1564535 | Msa0186800:intron |
GCATGACTAGCTACCTGGGT+TGG | 0.613754 | 2_1:-1564647 | None:intergenic |
AAACATGGTAGGCAAGGAGG+AGG | 0.626173 | 2_1:-1564138 | None:intergenic |
CTTGGGAAGGGTAACTGGAG+AGG | 0.645821 | 2_1:+1564593 | Msa0186800:CDS |
ACCAAACATGGTAGGCAAGG+AGG | 0.664492 | 2_1:-1564141 | None:intergenic |
AGGTATGCCGTGGACCGAGG+AGG | 0.665092 | 2_1:+1564538 | Msa0186800:intron |
TCAAGCTATTCTGAGACTGG+CGG | 0.679211 | 2_1:-1564685 | None:intergenic |
TGAGGATGAGAAAGCCACTG+AGG | 0.730112 | 2_1:-1564931 | None:intergenic |
CATGCCATTAGAGCTAACAG+AGG | 0.740508 | 2_1:+1565047 | Msa0186800:CDS |
AGAACTACCTGCCATCATCG+CGG | 0.745192 | 2_1:+1564099 | Msa0186800:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTAATTTACTTACATAA+TGG | - | chr2_1:1564739-1564758 | None:intergenic | 10.0% |
!! | AAATTAAATATAGAATAAGA+TGG | - | chr2_1:1564822-1564841 | None:intergenic | 10.0% |
!! | ATCTTATTCTATATTTAATT+TGG | + | chr2_1:1564821-1564840 | Msa0186800:intron | 10.0% |
!!! | ATTTTAATTTACTTACATAA+TGG | - | chr2_1:1564739-1564758 | None:intergenic | 10.0% |
!! | AAATTAAATATAGAATAAGA+TGG | - | chr2_1:1564822-1564841 | None:intergenic | 10.0% |
!! | ATCTTATTCTATATTTAATT+TGG | + | chr2_1:1564821-1564840 | Msa0186800:intron | 10.0% |
!!! | TAATTATAACCTTTTTTACT+GGG | - | chr2_1:1564221-1564240 | None:intergenic | 15.0% |
!!! | ATAATTATAACCTTTTTTAC+TGG | - | chr2_1:1564222-1564241 | None:intergenic | 15.0% |
!!! | AATTAAAGAAGTTTAAAGTA+AGG | - | chr2_1:1564795-1564814 | None:intergenic | 15.0% |
!!! | TAATTATAACCTTTTTTACT+GGG | - | chr2_1:1564221-1564240 | None:intergenic | 15.0% |
!!! | ATAATTATAACCTTTTTTAC+TGG | - | chr2_1:1564222-1564241 | None:intergenic | 15.0% |
!!! | AATTAAAGAAGTTTAAAGTA+AGG | - | chr2_1:1564795-1564814 | None:intergenic | 15.0% |
!! | TTAATTTACTTACATAATGG+AGG | - | chr2_1:1564736-1564755 | None:intergenic | 20.0% |
!!! | TATTCTATATTTAATTTGGC+AGG | + | chr2_1:1564825-1564844 | Msa0186800:intron | 20.0% |
!! | TTAATTTACTTACATAATGG+AGG | - | chr2_1:1564736-1564755 | None:intergenic | 20.0% |
!!! | TATTCTATATTTAATTTGGC+AGG | + | chr2_1:1564825-1564844 | Msa0186800:intron | 20.0% |
!! | ATTTTCATTTGAACCAAACA+TGG | - | chr2_1:1564156-1564175 | None:intergenic | 25.0% |
! | TGAATCCAAAATTCAAAATC+TGG | + | chr2_1:1564300-1564319 | Msa0186800:intron | 25.0% |
! | TCCAACTAATGAGAAAATTA+AGG | + | chr2_1:1564340-1564359 | Msa0186800:intron | 25.0% |
!! | TCCTTAATTTTCTCATTAGT+TGG | - | chr2_1:1564344-1564363 | None:intergenic | 25.0% |
!!! | ATGTACATTTTTTTGTGATC+AGG | + | chr2_1:1564518-1564537 | Msa0186800:intron | 25.0% |
!!! | TGCACGTAACTATTTTTATA+TGG | - | chr2_1:1564768-1564787 | None:intergenic | 25.0% |
!! | ATTTTCATTTGAACCAAACA+TGG | - | chr2_1:1564156-1564175 | None:intergenic | 25.0% |
! | TGAATCCAAAATTCAAAATC+TGG | + | chr2_1:1564300-1564319 | Msa0186800:intron | 25.0% |
! | TCCAACTAATGAGAAAATTA+AGG | + | chr2_1:1564340-1564359 | Msa0186800:intron | 25.0% |
!! | TCCTTAATTTTCTCATTAGT+TGG | - | chr2_1:1564344-1564363 | None:intergenic | 25.0% |
!!! | ATGTACATTTTTTTGTGATC+AGG | + | chr2_1:1564518-1564537 | Msa0186800:intron | 25.0% |
!!! | TGCACGTAACTATTTTTATA+TGG | - | chr2_1:1564768-1564787 | None:intergenic | 25.0% |
!!! | TTTCTGAAACTCCTTTTTGT+GGG | - | chr2_1:1564080-1564099 | None:intergenic | 30.0% |
TGATATATGCTCGTTTCTTA+CGG | - | chr2_1:1564189-1564208 | None:intergenic | 30.0% | |
!! | AGTTTTGTGAGGGTTAAATT+AGG | + | chr2_1:1564276-1564295 | Msa0186800:intron | 30.0% |
TAGAATTGTGAATTGTTGCT+TGG | + | chr2_1:1564479-1564498 | Msa0186800:intron | 30.0% | |
!! | TCTATATTTAATTTGGCAGG+TGG | + | chr2_1:1564828-1564847 | Msa0186800:intron | 30.0% |
!! | CTATATTTAATTTGGCAGGT+GGG | + | chr2_1:1564829-1564848 | Msa0186800:intron | 30.0% |
! | TTTGGAGTCAAATTTATTCC+TGG | - | chr2_1:1564865-1564884 | None:intergenic | 30.0% |
AATTTCTACTTCCACTTAGT+TGG | - | chr2_1:1564906-1564925 | None:intergenic | 30.0% | |
! | CATTTCAGTATTGAATGTTG+AGG | - | chr2_1:1564952-1564971 | None:intergenic | 30.0% |
CTCAACATTCAATACTGAAA+TGG | + | chr2_1:1564950-1564969 | Msa0186800:CDS | 30.0% | |
!!! | TTTCTGAAACTCCTTTTTGT+GGG | - | chr2_1:1564080-1564099 | None:intergenic | 30.0% |
TGATATATGCTCGTTTCTTA+CGG | - | chr2_1:1564189-1564208 | None:intergenic | 30.0% | |
!! | AGTTTTGTGAGGGTTAAATT+AGG | + | chr2_1:1564276-1564295 | Msa0186800:intron | 30.0% |
TAGAATTGTGAATTGTTGCT+TGG | + | chr2_1:1564479-1564498 | Msa0186800:intron | 30.0% | |
!! | TCTATATTTAATTTGGCAGG+TGG | + | chr2_1:1564828-1564847 | Msa0186800:intron | 30.0% |
!! | CTATATTTAATTTGGCAGGT+GGG | + | chr2_1:1564829-1564848 | Msa0186800:intron | 30.0% |
! | TTTGGAGTCAAATTTATTCC+TGG | - | chr2_1:1564865-1564884 | None:intergenic | 30.0% |
AATTTCTACTTCCACTTAGT+TGG | - | chr2_1:1564906-1564925 | None:intergenic | 30.0% | |
! | CATTTCAGTATTGAATGTTG+AGG | - | chr2_1:1564952-1564971 | None:intergenic | 30.0% |
CTCAACATTCAATACTGAAA+TGG | + | chr2_1:1564950-1564969 | Msa0186800:CDS | 30.0% | |
TGCTCATATTGTGGAAACTT+TGG | + | chr2_1:1563981-1564000 | Msa0186800:CDS | 35.0% | |
GAAACTTTGGTCACAATTCA+AGG | + | chr2_1:1563994-1564013 | Msa0186800:CDS | 35.0% | |
! | CTTTTTGTGGGCAAATATGA+AGG | - | chr2_1:1564068-1564087 | None:intergenic | 35.0% |
CTTCATATTTGCCCACAAAA+AGG | + | chr2_1:1564066-1564085 | Msa0186800:CDS | 35.0% | |
!!! | CTTTCTGAAACTCCTTTTTG+TGG | - | chr2_1:1564081-1564100 | None:intergenic | 35.0% |
TCATTTGAACCAAACATGGT+AGG | - | chr2_1:1564152-1564171 | None:intergenic | 35.0% | |
ACAATCAGACCCAGTAAAAA+AGG | + | chr2_1:1564209-1564228 | Msa0186800:intron | 35.0% | |
!! | CTTACAGATCAGTTTTGTGA+GGG | + | chr2_1:1564266-1564285 | Msa0186800:intron | 35.0% |
! | CTTGGCCAGATTTTGAATTT+TGG | - | chr2_1:1564308-1564327 | None:intergenic | 35.0% |
GAGCACATGATATTTCTTAG+AGG | + | chr2_1:1564560-1564579 | Msa0186800:CDS | 35.0% | |
! | TTACATAATGGAGGCTAAGA+TGG | - | chr2_1:1564727-1564746 | None:intergenic | 35.0% |
CTTATGCAGCTGATATCATT+TGG | - | chr2_1:1564883-1564902 | None:intergenic | 35.0% | |
! | GTAGAAATTTTCTTCCTCAG+TGG | + | chr2_1:1564917-1564936 | Msa0186800:CDS | 35.0% |
!! | GCAAGTTTGAGTTCTAAATC+AGG | - | chr2_1:1565021-1565040 | None:intergenic | 35.0% |
TGCTCATATTGTGGAAACTT+TGG | + | chr2_1:1563981-1564000 | Msa0186800:CDS | 35.0% | |
GAAACTTTGGTCACAATTCA+AGG | + | chr2_1:1563994-1564013 | Msa0186800:CDS | 35.0% | |
! | CTTTTTGTGGGCAAATATGA+AGG | - | chr2_1:1564068-1564087 | None:intergenic | 35.0% |
CTTCATATTTGCCCACAAAA+AGG | + | chr2_1:1564066-1564085 | Msa0186800:CDS | 35.0% | |
!!! | CTTTCTGAAACTCCTTTTTG+TGG | - | chr2_1:1564081-1564100 | None:intergenic | 35.0% |
TCATTTGAACCAAACATGGT+AGG | - | chr2_1:1564152-1564171 | None:intergenic | 35.0% | |
ACAATCAGACCCAGTAAAAA+AGG | + | chr2_1:1564209-1564228 | Msa0186800:intron | 35.0% | |
!! | CTTACAGATCAGTTTTGTGA+GGG | + | chr2_1:1564266-1564285 | Msa0186800:intron | 35.0% |
! | CTTGGCCAGATTTTGAATTT+TGG | - | chr2_1:1564308-1564327 | None:intergenic | 35.0% |
GAGCACATGATATTTCTTAG+AGG | + | chr2_1:1564560-1564579 | Msa0186800:CDS | 35.0% | |
! | TTACATAATGGAGGCTAAGA+TGG | - | chr2_1:1564727-1564746 | None:intergenic | 35.0% |
CTTATGCAGCTGATATCATT+TGG | - | chr2_1:1564883-1564902 | None:intergenic | 35.0% | |
! | GTAGAAATTTTCTTCCTCAG+TGG | + | chr2_1:1564917-1564936 | Msa0186800:CDS | 35.0% |
!! | GCAAGTTTGAGTTCTAAATC+AGG | - | chr2_1:1565021-1565040 | None:intergenic | 35.0% |
GCTAGGAAATGCTCATATTG+TGG | + | chr2_1:1563972-1563991 | Msa0186800:CDS | 40.0% | |
CCTCACAAAACTGATCTGTA+AGG | - | chr2_1:1564268-1564287 | None:intergenic | 40.0% | |
!! | CCTTACAGATCAGTTTTGTG+AGG | + | chr2_1:1564265-1564284 | Msa0186800:intron | 40.0% |
AAATATCATGTGCTCCTCCT+CGG | - | chr2_1:1564555-1564574 | None:intergenic | 40.0% | |
TTAGAGGACTTGAGAAGCTT+GGG | + | chr2_1:1564576-1564595 | Msa0186800:CDS | 40.0% | |
AACAACAAAAACACCAACCC+AGG | + | chr2_1:1564634-1564653 | Msa0186800:CDS | 40.0% | |
!! | TGATCAAGCTATTCTGAGAC+TGG | - | chr2_1:1564691-1564710 | None:intergenic | 40.0% |
GCCTAACTCTTCAACATCAA+CGG | + | chr2_1:1564972-1564991 | Msa0186800:CDS | 40.0% | |
TCCGTTGATGTTGAAGAGTT+AGG | - | chr2_1:1564976-1564995 | None:intergenic | 40.0% | |
!! | TCTGTTAGCTCTAATGGCAT+GGG | - | chr2_1:1565048-1565067 | None:intergenic | 40.0% |
GCTAGGAAATGCTCATATTG+TGG | + | chr2_1:1563972-1563991 | Msa0186800:CDS | 40.0% | |
CCTCACAAAACTGATCTGTA+AGG | - | chr2_1:1564268-1564287 | None:intergenic | 40.0% | |
!! | CCTTACAGATCAGTTTTGTG+AGG | + | chr2_1:1564265-1564284 | Msa0186800:intron | 40.0% |
AAATATCATGTGCTCCTCCT+CGG | - | chr2_1:1564555-1564574 | None:intergenic | 40.0% | |
TTAGAGGACTTGAGAAGCTT+GGG | + | chr2_1:1564576-1564595 | Msa0186800:CDS | 40.0% | |
AACAACAAAAACACCAACCC+AGG | + | chr2_1:1564634-1564653 | Msa0186800:CDS | 40.0% | |
!! | TGATCAAGCTATTCTGAGAC+TGG | - | chr2_1:1564691-1564710 | None:intergenic | 40.0% |
GCCTAACTCTTCAACATCAA+CGG | + | chr2_1:1564972-1564991 | Msa0186800:CDS | 40.0% | |
TCCGTTGATGTTGAAGAGTT+AGG | - | chr2_1:1564976-1564995 | None:intergenic | 40.0% | |
!! | TCTGTTAGCTCTAATGGCAT+GGG | - | chr2_1:1565048-1565067 | None:intergenic | 40.0% |
GGAGGAGGCTATTGATAAAG+AGG | - | chr2_1:1564126-1564145 | None:intergenic | 45.0% | |
TGAACCAAACATGGTAGGCA+AGG | - | chr2_1:1564147-1564166 | None:intergenic | 45.0% | |
! | GTTGGAGCATTCACTTCACT+TGG | - | chr2_1:1564326-1564345 | None:intergenic | 45.0% |
! | TTTTGTGATCAGGTATGCCG+TGG | + | chr2_1:1564528-1564547 | Msa0186800:intron | 45.0% |
CTTAGAGGACTTGAGAAGCT+TGG | + | chr2_1:1564575-1564594 | Msa0186800:CDS | 45.0% | |
! | TTGTGCATGACTAGCTACCT+GGG | - | chr2_1:1564654-1564673 | None:intergenic | 45.0% |
! | TTTGTGCATGACTAGCTACC+TGG | - | chr2_1:1564655-1564674 | None:intergenic | 45.0% |
!! | TCAAGCTATTCTGAGACTGG+CGG | - | chr2_1:1564688-1564707 | None:intergenic | 45.0% |
AGCTGCATAAGCCAACTAAG+TGG | + | chr2_1:1564892-1564911 | Msa0186800:CDS | 45.0% | |
! | AAATCAGGTGCTGCACTATG+AGG | - | chr2_1:1565006-1565025 | None:intergenic | 45.0% |
!! | CTCTGTTAGCTCTAATGGCA+TGG | - | chr2_1:1565049-1565068 | None:intergenic | 45.0% |
CATGCCATTAGAGCTAACAG+AGG | + | chr2_1:1565047-1565066 | Msa0186800:CDS | 45.0% | |
!! | CATGCCTCTGTTAGCTCTAA+TGG | - | chr2_1:1565054-1565073 | None:intergenic | 45.0% |
GGAGGAGGCTATTGATAAAG+AGG | - | chr2_1:1564126-1564145 | None:intergenic | 45.0% | |
TGAACCAAACATGGTAGGCA+AGG | - | chr2_1:1564147-1564166 | None:intergenic | 45.0% | |
! | GTTGGAGCATTCACTTCACT+TGG | - | chr2_1:1564326-1564345 | None:intergenic | 45.0% |
! | TTTTGTGATCAGGTATGCCG+TGG | + | chr2_1:1564528-1564547 | Msa0186800:intron | 45.0% |
CTTAGAGGACTTGAGAAGCT+TGG | + | chr2_1:1564575-1564594 | Msa0186800:CDS | 45.0% | |
! | TTGTGCATGACTAGCTACCT+GGG | - | chr2_1:1564654-1564673 | None:intergenic | 45.0% |
! | TTTGTGCATGACTAGCTACC+TGG | - | chr2_1:1564655-1564674 | None:intergenic | 45.0% |
!! | TCAAGCTATTCTGAGACTGG+CGG | - | chr2_1:1564688-1564707 | None:intergenic | 45.0% |
AGCTGCATAAGCCAACTAAG+TGG | + | chr2_1:1564892-1564911 | Msa0186800:CDS | 45.0% | |
! | AAATCAGGTGCTGCACTATG+AGG | - | chr2_1:1565006-1565025 | None:intergenic | 45.0% |
!! | CTCTGTTAGCTCTAATGGCA+TGG | - | chr2_1:1565049-1565068 | None:intergenic | 45.0% |
CATGCCATTAGAGCTAACAG+AGG | + | chr2_1:1565047-1565066 | Msa0186800:CDS | 45.0% | |
!! | CATGCCTCTGTTAGCTCTAA+TGG | - | chr2_1:1565054-1565073 | None:intergenic | 45.0% |
AGAACTACCTGCCATCATCG+CGG | + | chr2_1:1564099-1564118 | Msa0186800:CDS | 50.0% | |
GATAAAGAGGTCCGCGATGA+TGG | - | chr2_1:1564113-1564132 | None:intergenic | 50.0% | |
AAACATGGTAGGCAAGGAGG+AGG | - | chr2_1:1564141-1564160 | None:intergenic | 50.0% | |
TCCTCCTTGCCTACCATGTT+TGG | + | chr2_1:1564140-1564159 | Msa0186800:CDS | 50.0% | |
ACCAAACATGGTAGGCAAGG+AGG | - | chr2_1:1564144-1564163 | None:intergenic | 50.0% | |
AGGACTTGAGAAGCTTGGGA+AGG | + | chr2_1:1564580-1564599 | Msa0186800:CDS | 50.0% | |
GGACTTGAGAAGCTTGGGAA+GGG | + | chr2_1:1564581-1564600 | Msa0186800:CDS | 50.0% | |
AGAAGCTTGGGAAGGGTAAC+TGG | + | chr2_1:1564588-1564607 | Msa0186800:CDS | 50.0% | |
CAGGTGGGATGTGAAAAACC+AGG | + | chr2_1:1564844-1564863 | Msa0186800:intron | 50.0% | |
TGAGGATGAGAAAGCCACTG+AGG | - | chr2_1:1564934-1564953 | None:intergenic | 50.0% | |
AGAACTACCTGCCATCATCG+CGG | + | chr2_1:1564099-1564118 | Msa0186800:CDS | 50.0% | |
GATAAAGAGGTCCGCGATGA+TGG | - | chr2_1:1564113-1564132 | None:intergenic | 50.0% | |
AAACATGGTAGGCAAGGAGG+AGG | - | chr2_1:1564141-1564160 | None:intergenic | 50.0% | |
TCCTCCTTGCCTACCATGTT+TGG | + | chr2_1:1564140-1564159 | Msa0186800:CDS | 50.0% | |
ACCAAACATGGTAGGCAAGG+AGG | - | chr2_1:1564144-1564163 | None:intergenic | 50.0% | |
AGGACTTGAGAAGCTTGGGA+AGG | + | chr2_1:1564580-1564599 | Msa0186800:CDS | 50.0% | |
GGACTTGAGAAGCTTGGGAA+GGG | + | chr2_1:1564581-1564600 | Msa0186800:CDS | 50.0% | |
AGAAGCTTGGGAAGGGTAAC+TGG | + | chr2_1:1564588-1564607 | Msa0186800:CDS | 50.0% | |
CAGGTGGGATGTGAAAAACC+AGG | + | chr2_1:1564844-1564863 | Msa0186800:intron | 50.0% | |
TGAGGATGAGAAAGCCACTG+AGG | - | chr2_1:1564934-1564953 | None:intergenic | 50.0% | |
CTTGGGAAGGGTAACTGGAG+AGG | + | chr2_1:1564593-1564612 | Msa0186800:CDS | 55.0% | |
! | GCATGACTAGCTACCTGGGT+TGG | - | chr2_1:1564650-1564669 | None:intergenic | 55.0% |
CTTGGGAAGGGTAACTGGAG+AGG | + | chr2_1:1564593-1564612 | Msa0186800:CDS | 55.0% | |
! | GCATGACTAGCTACCTGGGT+TGG | - | chr2_1:1564650-1564669 | None:intergenic | 55.0% |
! | AAGAGGTCCGCGATGATGGC+AGG | - | chr2_1:1564109-1564128 | None:intergenic | 60.0% |
ATCAGGTATGCCGTGGACCG+AGG | + | chr2_1:1564535-1564554 | Msa0186800:intron | 60.0% | |
ATGTGCTCCTCCTCGGTCCA+CGG | - | chr2_1:1564548-1564567 | None:intergenic | 60.0% | |
! | AAGAGGTCCGCGATGATGGC+AGG | - | chr2_1:1564109-1564128 | None:intergenic | 60.0% |
ATCAGGTATGCCGTGGACCG+AGG | + | chr2_1:1564535-1564554 | Msa0186800:intron | 60.0% | |
ATGTGCTCCTCCTCGGTCCA+CGG | - | chr2_1:1564548-1564567 | None:intergenic | 60.0% | |
AGGTATGCCGTGGACCGAGG+AGG | + | chr2_1:1564538-1564557 | Msa0186800:intron | 65.0% | |
AGGTATGCCGTGGACCGAGG+AGG | + | chr2_1:1564538-1564557 | Msa0186800:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 1563963 | 1565083 | 1563963 | ID=Msa0186800;Name=Msa0186800 |
chr2_1 | mRNA | 1563963 | 1565083 | 1563963 | ID=Msa0186800-mRNA-1;Parent=Msa0186800;Name=Msa0186800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.5|0.33|3|0|219 |
chr2_1 | exon | 1563963 | 1564182 | 1563963 | ID=Msa0186800-mRNA-1:exon:618;Parent=Msa0186800-mRNA-1 |
chr2_1 | exon | 1564540 | 1564742 | 1564540 | ID=Msa0186800-mRNA-1:exon:619;Parent=Msa0186800-mRNA-1 |
chr2_1 | exon | 1564847 | 1565083 | 1564847 | ID=Msa0186800-mRNA-1:exon:620;Parent=Msa0186800-mRNA-1 |
chr2_1 | CDS | 1563963 | 1564182 | 1563963 | ID=Msa0186800-mRNA-1:cds;Parent=Msa0186800-mRNA-1 |
chr2_1 | CDS | 1564540 | 1564742 | 1564540 | ID=Msa0186800-mRNA-1:cds;Parent=Msa0186800-mRNA-1 |
chr2_1 | CDS | 1564847 | 1565083 | 1564847 | ID=Msa0186800-mRNA-1:cds;Parent=Msa0186800-mRNA-1 |
Gene Sequence |
Protein sequence |