Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143250 | XP_003625821.1 | 96.250 | 160 | 6 | 0 | 1 | 160 | 1 | 160 | 7.15e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143250 | sp|Q8LCY2|ISAM2_ARATH | 60.377 | 159 | 61 | 1 | 1 | 159 | 1 | 157 | 1.94e-61 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143250 | G7KQU7 | 96.250 | 160 | 6 | 0 | 1 | 160 | 1 | 160 | 3.42e-110 | 319 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143250 | Msa0851800 | 0.805413 | 1.351297e-49 | -8.615850e-47 |
| Msa0143250 | Msa1125560 | 0.874506 | 6.401747e-68 | -8.615850e-47 |
| Msa0143250 | Msa1386220 | 0.895371 | 1.021707e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143250 | MtrunA17_Chr7g0266291 | 96.250 | 160 | 6 | 0 | 1 | 160 | 1 | 160 | 6.58e-114 | 319 |
| Msa0143250 | MtrunA17_Chr1g0178671 | 34.524 | 84 | 54 | 1 | 76 | 159 | 44 | 126 | 3.08e-14 | 65.9 |
| Msa0143250 | MtrunA17_Chr8g0383271 | 32.381 | 105 | 66 | 3 | 51 | 153 | 70 | 171 | 4.61e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143250 | AT5G03905.1 | 60.377 | 159 | 61 | 1 | 1 | 159 | 1 | 157 | 1.97e-62 | 189 |
| Msa0143250 | AT5G03905.2 | 48.077 | 104 | 52 | 1 | 1 | 104 | 1 | 102 | 1.57e-24 | 92.0 |
| Msa0143250 | AT2G16710.1 | 34.146 | 82 | 53 | 1 | 76 | 157 | 45 | 125 | 3.76e-13 | 63.2 |
| Msa0143250 | AT2G36260.1 | 37.037 | 81 | 49 | 2 | 76 | 156 | 28 | 106 | 8.19e-12 | 58.9 |
| Msa0143250 | AT2G16710.3 | 31.818 | 88 | 53 | 2 | 76 | 157 | 45 | 131 | 4.68e-11 | 57.8 |
Find 46 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCTGTTCTATTATCTTT+TGG | 0.239982 | 1_4:-2159643 | Msa0143250:three_prime_UTR |
| TGTAATGGTAATAAATTATC+AGG | 0.291250 | 1_4:-2159676 | Msa0143250:three_prime_UTR |
| CAGTTGTAAAAGTTCCTTCA+TGG | 0.367289 | 1_4:-2159882 | Msa0143250:CDS |
| TGAGAAGGAAGGAATTAAAC+TGG | 0.374459 | 1_4:-2161869 | Msa0143250:CDS |
| CTGCAACCACCAACTGCACT+TGG | 0.390122 | 1_4:+2159902 | None:intergenic |
| GGAACAGAAAATGAAGGAAT+TGG | 0.403267 | 1_4:-2162119 | Msa0143250:intron |
| ATAGAAACCGGTGGATGTTC+AGG | 0.446339 | 1_4:-2162052 | Msa0143250:CDS |
| GCGGTGGAGGAAAGTGAGGA+GGG | 0.446347 | 1_4:+2159830 | None:intergenic |
| GAAACAGTAGTTAGCTATCT+TGG | 0.449743 | 1_4:-2159858 | Msa0143250:exon |
| GCACCAAAAGATAATAGAAC+AGG | 0.462067 | 1_4:+2159640 | None:intergenic |
| ATGTGGACAGGTTCCACGTC+GGG | 0.463532 | 1_4:+2162462 | None:intergenic |
| ACAGAGTCAACTCAGATGAT+AGG | 0.477854 | 1_4:-2162003 | Msa0143250:intron |
| GTAACATACAGTTGTTGTAA+TGG | 0.499420 | 1_4:-2159691 | Msa0143250:three_prime_UTR |
| AATCACACCATTGATGTCTC+AGG | 0.504098 | 1_4:+2162631 | None:intergenic |
| TCCACCGGATGATGATTCAC+TGG | 0.509565 | 1_4:+2162093 | None:intergenic |
| AGATGTGGCATGGTGAAGAA+TGG | 0.513237 | 1_4:+2162497 | None:intergenic |
| CTTCGTTTAAGCATAGAAAC+CGG | 0.525008 | 1_4:-2162064 | Msa0143250:CDS |
| TGTCGAGGAGCTAATCCGTT+CGG | 0.527854 | 1_4:-2161797 | Msa0143250:CDS |
| AATAAACATTTGAGCGGTGG+AGG | 0.528089 | 1_4:+2159817 | None:intergenic |
| GGTTCCACGTCGGGAGAAGA+AGG | 0.530859 | 1_4:+2162471 | None:intergenic |
| TCGAAGACTCGCTCCATCGT+TGG | 0.532351 | 1_4:-2162580 | Msa0143250:CDS |
| ATTTCATACGACTTTGTGAA+AGG | 0.535942 | 1_4:-2161835 | Msa0143250:CDS |
| TTCACCTTCTTCTCCCGACG+TGG | 0.537237 | 1_4:-2162475 | Msa0143250:CDS |
| AGCGGTGGAGGAAAGTGAGG+AGG | 0.553032 | 1_4:+2159829 | None:intergenic |
| GATGCCAGTGAATCATCATC+CGG | 0.561795 | 1_4:-2162097 | Msa0143250:CDS |
| TGAAATCGTGCTGCCAACGA+TGG | 0.563513 | 1_4:+2162567 | None:intergenic |
| TAACTACTGTTTCACCATGA+AGG | 0.567622 | 1_4:+2159868 | None:intergenic |
| CGTTGGCAGCACGATTTCAA+CGG | 0.568585 | 1_4:-2162563 | Msa0143250:CDS |
| GAATGTGGAACAGAAAATGA+AGG | 0.569964 | 1_4:-2162125 | Msa0143250:intron |
| AGAAGATCCTGAGACATCAA+TGG | 0.572109 | 1_4:-2162638 | Msa0143250:five_prime_UTR |
| CATAGTATAATCTAGTTCGA+CGG | 0.575888 | 1_4:+2159794 | None:intergenic |
| TGCAACCACCAACTGCACTT+GGG | 0.581343 | 1_4:+2159903 | None:intergenic |
| CGGAATAAACATTTGAGCGG+TGG | 0.596422 | 1_4:+2159814 | None:intergenic |
| CTGAAATCCTGAACATCCAC+CGG | 0.596753 | 1_4:+2162045 | None:intergenic |
| CGGTGGAGGAAAGTGAGGAG+GGG | 0.602223 | 1_4:+2159831 | None:intergenic |
| ACGGAGAACCCAAGTGCAGT+TGG | 0.605079 | 1_4:-2159911 | Msa0143250:CDS |
| GAGAACCCAAGTGCAGTTGG+TGG | 0.609330 | 1_4:-2159908 | Msa0143250:CDS |
| CGCAACTGTTGATTATGTCG+AGG | 0.618120 | 1_4:-2161812 | Msa0143250:CDS |
| TTGAGCGGTGGAGGAAAGTG+AGG | 0.625815 | 1_4:+2159826 | None:intergenic |
| CGTTTAAGCATAGAAACCGG+TGG | 0.638957 | 1_4:-2162061 | Msa0143250:CDS |
| GACTTACTATGAAAGCCGAA+CGG | 0.642245 | 1_4:+2161782 | None:intergenic |
| GGGAGAAGAAGGTGAAGATG+TGG | 0.644162 | 1_4:+2162482 | None:intergenic |
| AAGAAGGTGAAGATGTGGCA+TGG | 0.649445 | 1_4:+2162487 | None:intergenic |
| GCCAGTGAATCATCATCCGG+TGG | 0.654118 | 1_4:-2162094 | Msa0143250:CDS |
| CGACGGAATAAACATTTGAG+CGG | 0.683940 | 1_4:+2159811 | None:intergenic |
| TATGTGGACAGGTTCCACGT+CGG | 0.705696 | 1_4:+2162461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATACATTTCAAAATT+TGG | - | chr1_4:2159925-2159944 | Msa0143250:intron | 15.0% |
| !! | ATCAATTACATTACATATAA+TGG | + | chr1_4:2160115-2160134 | None:intergenic | 15.0% |
| !! | TTATAATTTATAAAAGACAC+TGG | + | chr1_4:2160364-2160383 | None:intergenic | 15.0% |
| !!! | ACCTTTTTATAATTTTAGTA+TGG | - | chr1_4:2160629-2160648 | Msa0143250:intron | 15.0% |
| !! | ACCATACTAAAATTATAAAA+AGG | + | chr1_4:2160633-2160652 | None:intergenic | 15.0% |
| !!! | TTTCAATACCTTTTAATTTT+GGG | + | chr1_4:2161913-2161932 | None:intergenic | 15.0% |
| !!! | TTTTCAATACCTTTTAATTT+TGG | + | chr1_4:2161914-2161933 | None:intergenic | 15.0% |
| !! | TACATTTCAAAATTTGGATT+AGG | - | chr1_4:2159931-2159950 | Msa0143250:intron | 20.0% |
| !!! | ATTTCAGTATGCTTTTAATT+TGG | - | chr1_4:2160255-2160274 | Msa0143250:intron | 20.0% |
| !! | TTGAAAAAAATTCTTGAACA+GGG | + | chr1_4:2161109-2161128 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAATTCTTGAAC+AGG | + | chr1_4:2161110-2161129 | None:intergenic | 20.0% |
| !! | TTTCAAAAAAAAAAACAGAG+TGG | - | chr1_4:2161123-2161142 | Msa0143250:intron | 20.0% |
| !! | TTCAAAAAAAAAAACAGAGT+GGG | - | chr1_4:2161124-2161143 | Msa0143250:intron | 20.0% |
| !! | TTGTAAAATGTATATACTCA+TGG | + | chr1_4:2161176-2161195 | None:intergenic | 20.0% |
| !! | TAAAACTTAACAACATATTC+AGG | - | chr1_4:2161224-2161243 | Msa0143250:intron | 20.0% |
| !! | TTCATCCTCAAAAATTTATA+CGG | + | chr1_4:2161293-2161312 | None:intergenic | 20.0% |
| !! | ATATGAAACCAAAATGTATA+AGG | + | chr1_4:2161392-2161411 | None:intergenic | 20.0% |
| !!! | TTATTTTGGTTTGAACTTAA+TGG | + | chr1_4:2161551-2161570 | None:intergenic | 20.0% |
| !! | TACTTAATAACAAAAGCAAA+GGG | + | chr1_4:2161968-2161987 | None:intergenic | 20.0% |
| !! | ATACTTAATAACAAAAGCAA+AGG | + | chr1_4:2161969-2161988 | None:intergenic | 20.0% |
| !!! | ATCATTTTCGTAATATAAGA+AGG | - | chr1_4:2162103-2162122 | Msa0143250:CDS | 20.0% |
| !! | TTTATAAGTTATGACATTGA+AGG | - | chr1_4:2162296-2162315 | Msa0143250:intron | 20.0% |
| !! | AAAATAAATGTAAGTTTGTC+TGG | + | chr1_4:2162334-2162353 | None:intergenic | 20.0% |
| !!! | ACAAACTTACATTTATTTTC+TGG | - | chr1_4:2162335-2162354 | Msa0143250:intron | 20.0% |
| !!! | AATCAATCAATTGTTTTTTG+AGG | + | chr1_4:2162532-2162551 | None:intergenic | 20.0% |
| !! | TGTAATGGTAATAAATTATC+AGG | - | chr1_4:2162608-2162627 | Msa0143250:exon | 20.0% |
| ! | AAAAAGAGCTTATAAGATTC+TGG | + | chr1_4:2159749-2159768 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTACAAACAAGT+TGG | + | chr1_4:2160139-2160158 | None:intergenic | 25.0% |
| ! | TTTGTACAACTTAATGAATG+TGG | - | chr1_4:2160144-2160163 | Msa0143250:intron | 25.0% |
| !!! | ATTTTAGTATGGTACTAATC+AGG | - | chr1_4:2160640-2160659 | Msa0143250:intron | 25.0% |
| ! | AAATTGTTAATGTACACTCA+TGG | + | chr1_4:2161009-2161028 | None:intergenic | 25.0% |
| ! | AGGTTCAGATTCAAAATATA+AGG | - | chr1_4:2161244-2161263 | Msa0143250:intron | 25.0% |
| ! | AAAACTTCAAACATTGAACA+GGG | + | chr1_4:2161270-2161289 | None:intergenic | 25.0% |
| !! | GTTTTCCGTATAAATTTTTG+AGG | - | chr1_4:2161285-2161304 | Msa0143250:intron | 25.0% |
| !!! | AAAAACCTAAAAGCATCTAA+AGG | + | chr1_4:2161362-2161381 | None:intergenic | 25.0% |
| ! | AAATTACAAAACTGACATGT+GGG | + | chr1_4:2161683-2161702 | None:intergenic | 25.0% |
| ! | TATGTTGCTCTACATAATTT+AGG | + | chr1_4:2161734-2161753 | None:intergenic | 25.0% |
| ! | TAAATTATGTAGAGCAACAT+AGG | - | chr1_4:2161733-2161752 | Msa0143250:intron | 25.0% |
| ! | CATTCTTTAATCAAAGTTCA+TGG | + | chr1_4:2161785-2161804 | None:intergenic | 25.0% |
| ! | CTATTTAGTTAGAGTAACAT+GGG | + | chr1_4:2161848-2161867 | None:intergenic | 25.0% |
| ! | TTAATCTCACATAAATAGAG+CGG | + | chr1_4:2161878-2161897 | None:intergenic | 25.0% |
| !! | AGTTTTCACCCAAAATTAAA+AGG | - | chr1_4:2161902-2161921 | Msa0143250:intron | 25.0% |
| !!! | TATTTTCTGGTTTCATTTTC+AGG | - | chr1_4:2162348-2162367 | Msa0143250:intron | 25.0% |
| ! | TCTCTCAATTGCTTGTTAAT+TGG | - | chr1_4:2159877-2159896 | Msa0143250:CDS | 30.0% |
| TTATGACAGTTATGCAGATA+GGG | - | chr1_4:2160018-2160037 | Msa0143250:intron | 30.0% | |
| AGTCAGATTTCAATGTTGAT+AGG | - | chr1_4:2160319-2160338 | Msa0143250:intron | 30.0% | |
| ATTTCATACGACTTTGTGAA+AGG | - | chr1_4:2160449-2160468 | Msa0143250:intron | 30.0% | |
| AAGAATGGGTATGTTATGTT+AGG | - | chr1_4:2160971-2160990 | Msa0143250:intron | 30.0% | |
| ! | AACCATATTCAAGTTCAGAT+TGG | - | chr1_4:2161065-2161084 | Msa0143250:intron | 30.0% |
| TTCCAATCTGAACTTGAATA+TGG | + | chr1_4:2161070-2161089 | None:intergenic | 30.0% | |
| ATTGGAATCCAAAATCAACA+AGG | - | chr1_4:2161083-2161102 | Msa0143250:intron | 30.0% | |
| GAAAACTTCAAACATTGAAC+AGG | + | chr1_4:2161271-2161290 | None:intergenic | 30.0% | |
| ! | TTACCATGCCTTATACATTT+TGG | - | chr1_4:2161381-2161400 | Msa0143250:intron | 30.0% |
| AAACCAAAATGTATAAGGCA+TGG | + | chr1_4:2161387-2161406 | None:intergenic | 30.0% | |
| !! | ATGTGTCATTTCTTGTTAAG+TGG | - | chr1_4:2161447-2161466 | Msa0143250:intron | 30.0% |
| !! | TAATGTTGGTTACATTTTCC+AGG | + | chr1_4:2161593-2161612 | None:intergenic | 30.0% |
| ! | GAAGCACTTTATTCTAATGT+TGG | + | chr1_4:2161607-2161626 | None:intergenic | 30.0% |
| CAAATTACAAAACTGACATG+TGG | + | chr1_4:2161684-2161703 | None:intergenic | 30.0% | |
| GCTATTTAGTTAGAGTAACA+TGG | + | chr1_4:2161849-2161868 | None:intergenic | 30.0% | |
| TACTCTAACTAAATAGCCTA+AGG | - | chr1_4:2161852-2161871 | Msa0143250:CDS | 30.0% | |
| ! | CAATGATGTTTTGTGTTTGA+TGG | - | chr1_4:2162079-2162098 | Msa0143250:CDS | 30.0% |
| ! | CATAGTATAATCTAGTTCGA+CGG | + | chr1_4:2162493-2162512 | None:intergenic | 30.0% |
| GTAACATACAGTTGTTGTAA+TGG | - | chr1_4:2162593-2162612 | Msa0143250:CDS | 30.0% | |
| ! | TAGCCTGTTCTATTATCTTT+TGG | - | chr1_4:2162641-2162660 | Msa0143250:five_prime_UTR | 30.0% |
| !! | TTGGATTAGGTTTTCGTTGA+TGG | - | chr1_4:2159944-2159963 | Msa0143250:intron | 35.0% |
| ! | TATGAGAAGCATATGCGATA+AGG | + | chr1_4:2159971-2159990 | None:intergenic | 35.0% |
| GTTATGACAGTTATGCAGAT+AGG | - | chr1_4:2160017-2160036 | Msa0143250:intron | 35.0% | |
| GAATGTGGAACAGAAAATGA+AGG | - | chr1_4:2160159-2160178 | Msa0143250:intron | 35.0% | |
| GGAACAGAAAATGAAGGAAT+TGG | - | chr1_4:2160165-2160184 | Msa0143250:intron | 35.0% | |
| !! | TAAACGAAGCATTTTTCCAC+CGG | + | chr1_4:2160209-2160228 | None:intergenic | 35.0% |
| CTTCGTTTAAGCATAGAAAC+CGG | - | chr1_4:2160220-2160239 | Msa0143250:intron | 35.0% | |
| TTGAAATCTGACTATCCAAG+TGG | + | chr1_4:2160312-2160331 | None:intergenic | 35.0% | |
| !! | TATTGCCAGAGTTTTTGAGA+AGG | - | chr1_4:2160400-2160419 | Msa0143250:intron | 35.0% |
| TGAGAAGGAAGGAATTAAAC+TGG | - | chr1_4:2160415-2160434 | Msa0143250:intron | 35.0% | |
| ATCAGGTAACGAAGTTTCTT+AGG | - | chr1_4:2160657-2160676 | Msa0143250:intron | 35.0% | |
| TCCTAAAATCTCAAGCTGAT+AGG | + | chr1_4:2160811-2160830 | None:intergenic | 35.0% | |
| !! | CTTGAGATTTTAGGAGAGTT+GGG | - | chr1_4:2160816-2160835 | Msa0143250:intron | 35.0% |
| TACCCATTCTTGTAAAGAGT+GGG | + | chr1_4:2160962-2160981 | None:intergenic | 35.0% | |
| ATACCCATTCTTGTAAAGAG+TGG | + | chr1_4:2160963-2160982 | None:intergenic | 35.0% | |
| ! | TGGACGATTTTATATCCCAA+CGG | + | chr1_4:2161156-2161175 | None:intergenic | 35.0% |
| GATGAACCTGTTGTATATAG+AGG | - | chr1_4:2161307-2161326 | Msa0143250:intron | 35.0% | |
| AAGTCACCTCTATATACAAC+AGG | + | chr1_4:2161316-2161335 | None:intergenic | 35.0% | |
| !! | ATCTAAAGGCATTGTTTGGA+TGG | + | chr1_4:2161348-2161367 | None:intergenic | 35.0% |
| !! | AAGCATCTAAAGGCATTGTT+TGG | + | chr1_4:2161352-2161371 | None:intergenic | 35.0% |
| ! | CAATGCCTTTAGATGCTTTT+AGG | - | chr1_4:2161354-2161373 | Msa0143250:intron | 35.0% |
| TAACAAGAAATGACACATGC+TGG | + | chr1_4:2161445-2161464 | None:intergenic | 35.0% | |
| AAGTGTGCCAAAAACCTAAA+CGG | + | chr1_4:2161528-2161547 | None:intergenic | 35.0% | |
| !!! | CTCTAGTGGTAGCTTTATTT+TGG | + | chr1_4:2161565-2161584 | None:intergenic | 35.0% |
| AAGTGCTTCTTGCAAAATTG+TGG | - | chr1_4:2161618-2161637 | Msa0143250:intron | 35.0% | |
| CATAGGTACTTCTGATCTTA+AGG | - | chr1_4:2161750-2161769 | Msa0143250:intron | 35.0% | |
| TCACATCGACATACAATCTA+AGG | + | chr1_4:2162182-2162201 | None:intergenic | 35.0% | |
| ACTGTGATATCCAATGGTAT+TGG | - | chr1_4:2162221-2162240 | Msa0143250:intron | 35.0% | |
| ! | GATATCCAATGGTATTGGAA+TGG | - | chr1_4:2162226-2162245 | Msa0143250:intron | 35.0% |
| ACATTCCATTCCAATACCAT+TGG | + | chr1_4:2162234-2162253 | None:intergenic | 35.0% | |
| CAGTTGTAAAAGTTCCTTCA+TGG | - | chr1_4:2162402-2162421 | Msa0143250:intron | 35.0% | |
| TAACTACTGTTTCACCATGA+AGG | + | chr1_4:2162419-2162438 | None:intergenic | 35.0% | |
| GAAACAGTAGTTAGCTATCT+TGG | - | chr1_4:2162426-2162445 | Msa0143250:intron | 35.0% | |
| GCACCAAAAGATAATAGAAC+AGG | + | chr1_4:2162647-2162666 | None:intergenic | 35.0% | |
| AGAAGATCCTGAGACATCAA+TGG | - | chr1_4:2159646-2159665 | Msa0143250:three_prime_UTR | 40.0% | |
| AATCACACCATTGATGTCTC+AGG | + | chr1_4:2159656-2159675 | None:intergenic | 40.0% | |
| AGTTCATGTTGTACTGTACC+CGG | - | chr1_4:2160072-2160091 | Msa0143250:intron | 40.0% | |
| ACAGAGTCAACTCAGATGAT+AGG | - | chr1_4:2160281-2160300 | Msa0143250:intron | 40.0% | |
| AGATGATAGGTACTACCACT+TGG | - | chr1_4:2160294-2160313 | Msa0143250:intron | 40.0% | |
| GACACTGGTGTATCAACATA+TGG | + | chr1_4:2160349-2160368 | None:intergenic | 40.0% | |
| TCCTTCCTTCTCAAAAACTC+TGG | + | chr1_4:2160408-2160427 | None:intergenic | 40.0% | |
| GACTTACTATGAAAGCCGAA+CGG | + | chr1_4:2160505-2160524 | None:intergenic | 40.0% | |
| ACTTGTAACCATGTGTATGC+TGG | - | chr1_4:2160531-2160550 | Msa0143250:intron | 40.0% | |
| AATCTCAAGCTGATAGGCAA+AGG | + | chr1_4:2160805-2160824 | None:intergenic | 40.0% | |
| ! | GCCTATCAGCTTGAGATTTT+AGG | - | chr1_4:2160807-2160826 | Msa0143250:intron | 40.0% |
| !! | GCTTGAGATTTTAGGAGAGT+TGG | - | chr1_4:2160815-2160834 | Msa0143250:intron | 40.0% |
| AAGCCCACTCTTTACAAGAA+TGG | - | chr1_4:2160956-2160975 | Msa0143250:intron | 40.0% | |
| AGCCCACTCTTTACAAGAAT+GGG | - | chr1_4:2160957-2160976 | Msa0143250:intron | 40.0% | |
| TTCAAAGCAAAAGTTCCGTC+AGG | + | chr1_4:2161489-2161508 | None:intergenic | 40.0% | |
| CCAAAAACCTAAACGGTGTT+GGG | + | chr1_4:2161521-2161540 | None:intergenic | 40.0% | |
| ! | TTTTCCAGGCATATCTCTAG+TGG | + | chr1_4:2161579-2161598 | None:intergenic | 40.0% |
| CTTGCAAAATTGTGGTCAAG+AGG | - | chr1_4:2161626-2161645 | Msa0143250:intron | 40.0% | |
| ATATCACCAAACAGTGGAGA+AGG | + | chr1_4:2161825-2161844 | None:intergenic | 40.0% | |
| CCAAATAAGTGAATCACAGC+AGG | + | chr1_4:2162017-2162036 | None:intergenic | 40.0% | |
| CCTGCTGTGATTCACTTATT+TGG | - | chr1_4:2162014-2162033 | Msa0143250:CDS | 40.0% | |
| GATGCAACTGTGATATCCAA+TGG | - | chr1_4:2162215-2162234 | Msa0143250:intron | 40.0% | |
| !!! | CTGGTTTCATTTTCAGGTGA+CGG | - | chr1_4:2162354-2162373 | Msa0143250:intron | 40.0% |
| AATAAACATTTGAGCGGTGG+AGG | + | chr1_4:2162470-2162489 | None:intergenic | 40.0% | |
| CGACGGAATAAACATTTGAG+CGG | + | chr1_4:2162476-2162495 | None:intergenic | 40.0% | |
| AGATGTGGCATGGTGAAGAA+TGG | + | chr1_4:2159790-2159809 | None:intergenic | 45.0% | |
| AAGAAGGTGAAGATGTGGCA+TGG | + | chr1_4:2159800-2159819 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGGTTATGTGGAC+AGG | + | chr1_4:2159837-2159856 | None:intergenic | 45.0% |
| ! | GAACGCAGTTTTCGGTTATG+TGG | + | chr1_4:2159842-2159861 | None:intergenic | 45.0% |
| ! | GCATACACGAACGCAGTTTT+CGG | + | chr1_4:2159850-2159869 | None:intergenic | 45.0% |
| GTTCATGTTGTACTGTACCC+GGG | - | chr1_4:2160073-2160092 | Msa0143250:intron | 45.0% | |
| GATGCCAGTGAATCATCATC+CGG | - | chr1_4:2160187-2160206 | Msa0143250:intron | 45.0% | |
| CGTTTAAGCATAGAAACCGG+TGG | - | chr1_4:2160223-2160242 | Msa0143250:intron | 45.0% | |
| ATAGAAACCGGTGGATGTTC+AGG | - | chr1_4:2160232-2160251 | Msa0143250:intron | 45.0% | |
| CTGAAATCCTGAACATCCAC+CGG | + | chr1_4:2160242-2160261 | None:intergenic | 45.0% | |
| !! | GCCAGAGTTTTTGAGAAGGA+AGG | - | chr1_4:2160404-2160423 | Msa0143250:intron | 45.0% |
| ! | CGCAACTGTTGATTATGTCG+AGG | - | chr1_4:2160472-2160491 | Msa0143250:intron | 45.0% |
| CACAAACACCAGCATACACA+TGG | + | chr1_4:2160542-2160561 | None:intergenic | 45.0% | |
| CATGTGTATGCTGGTGTTTG+TGG | - | chr1_4:2160540-2160559 | Msa0143250:intron | 45.0% | |
| TGCACAGGAATCACAGAGAA+AGG | + | chr1_4:2160597-2160616 | None:intergenic | 45.0% | |
| GATTCCTGTGCACTACAACA+TGG | - | chr1_4:2160605-2160624 | Msa0143250:intron | 45.0% | |
| !! | ATTTTAGGAGAGTTGGGCCT+TGG | - | chr1_4:2160822-2160841 | Msa0143250:intron | 45.0% |
| AATCCACTCTCCAGTTACCA+AGG | + | chr1_4:2160842-2160861 | None:intergenic | 45.0% | |
| !!! | GAACAGGGCCTTGTTGATTT+TGG | + | chr1_4:2161094-2161113 | None:intergenic | 45.0% |
| TGATGCAATTGCTCTCCTGA+CGG | - | chr1_4:2161471-2161490 | Msa0143250:intron | 45.0% | |
| !! | CCCAACACCGTTTAGGTTTT+TGG | - | chr1_4:2161518-2161537 | Msa0143250:intron | 45.0% |
| GCCAAAAACCTAAACGGTGT+TGG | + | chr1_4:2161522-2161541 | None:intergenic | 45.0% | |
| TTGACACCTTCTCCACTGTT+TGG | - | chr1_4:2161816-2161835 | Msa0143250:CDS | 45.0% | |
| CATGGGATATCACCAAACAG+TGG | + | chr1_4:2161831-2161850 | None:intergenic | 45.0% | |
| CACATAAATAGAGCGGCCTT+AGG | + | chr1_4:2161871-2161890 | None:intergenic | 45.0% | |
| AAGTGAATCACAGCAGGCTA+TGG | + | chr1_4:2162011-2162030 | None:intergenic | 45.0% | |
| CATTAACACGCCCTTCAAAG+CGG | - | chr1_4:2162128-2162147 | Msa0143250:intron | 45.0% | |
| !! | TGCGTTTTGAACCAAGTTCG+AGG | - | chr1_4:2162155-2162174 | Msa0143250:intron | 45.0% |
| CAATCTAAGGACCTCGAACT+TGG | + | chr1_4:2162169-2162188 | None:intergenic | 45.0% | |
| TGTCATGAGTGTGCGAGAAA+AGG | - | chr1_4:2162251-2162270 | Msa0143250:intron | 45.0% | |
| GTCATGAGTGTGCGAGAAAA+GGG | - | chr1_4:2162252-2162271 | Msa0143250:intron | 45.0% | |
| CGGAATAAACATTTGAGCGG+TGG | + | chr1_4:2162473-2162492 | None:intergenic | 45.0% | |
| TGAAATCGTGCTGCCAACGA+TGG | + | chr1_4:2159720-2159739 | None:intergenic | 50.0% | |
| CGTTGGCAGCACGATTTCAA+CGG | - | chr1_4:2159721-2159740 | Msa0143250:three_prime_UTR | 50.0% | |
| GGGAGAAGAAGGTGAAGATG+TGG | + | chr1_4:2159805-2159824 | None:intergenic | 50.0% | |
| TATGTGGACAGGTTCCACGT+CGG | + | chr1_4:2159826-2159845 | None:intergenic | 50.0% | |
| TGTTGTACTGTACCCGGGTT+AGG | - | chr1_4:2160078-2160097 | Msa0143250:intron | 50.0% | |
| GTACGCATAGTTCCTAACCC+GGG | + | chr1_4:2160093-2160112 | None:intergenic | 50.0% | |
| GGTACGCATAGTTCCTAACC+CGG | + | chr1_4:2160094-2160113 | None:intergenic | 50.0% | |
| TCCACCGGATGATGATTCAC+TGG | + | chr1_4:2160194-2160213 | None:intergenic | 50.0% | |
| TGTCGAGGAGCTAATCCGTT+CGG | - | chr1_4:2160487-2160506 | Msa0143250:intron | 50.0% | |
| GGTTCCATGTTGTAGTGCAC+AGG | + | chr1_4:2160612-2160631 | None:intergenic | 50.0% | |
| ACAGAGTGGGTATGTTCCGT+TGG | - | chr1_4:2161137-2161156 | Msa0143250:intron | 50.0% | |
| CAGAGTGGGTATGTTCCGTT+GGG | - | chr1_4:2161138-2161157 | Msa0143250:intron | 50.0% | |
| ACTCTCTCCCAACACCGTTT+AGG | - | chr1_4:2161511-2161530 | Msa0143250:intron | 50.0% | |
| GCTACCACTAGAGATATGCC+TGG | - | chr1_4:2161572-2161591 | Msa0143250:intron | 50.0% | |
| ACAAAACTGACATGTGGGCC+TGG | + | chr1_4:2161678-2161697 | None:intergenic | 50.0% | |
| !! | AACGCACATGCCGCTTTGAA+GGG | + | chr1_4:2162141-2162160 | None:intergenic | 50.0% |
| !! | AAACGCACATGCCGCTTTGA+AGG | + | chr1_4:2162142-2162161 | None:intergenic | 50.0% |
| TGCAACCACCAACTGCACTT+GGG | + | chr1_4:2162384-2162403 | None:intergenic | 50.0% | |
| TCGAAGACTCGCTCCATCGT+TGG | - | chr1_4:2159704-2159723 | Msa0143250:three_prime_UTR | 55.0% | |
| TTCACCTTCTTCTCCCGACG+TGG | - | chr1_4:2159809-2159828 | Msa0143250:three_prime_UTR | 55.0% | |
| ATGTGGACAGGTTCCACGTC+GGG | + | chr1_4:2159825-2159844 | None:intergenic | 55.0% | |
| GCCAGTGAATCATCATCCGG+TGG | - | chr1_4:2160190-2160209 | Msa0143250:intron | 55.0% | |
| ! | GAGAGTTGGGCCTTGGTAAC+TGG | - | chr1_4:2160829-2160848 | Msa0143250:intron | 55.0% |
| GGTTTACGTTGCAGGGCTAC+AGG | + | chr1_4:2161657-2161676 | None:intergenic | 55.0% | |
| GTAGCCCTGCAACGTAAACC+AGG | - | chr1_4:2161657-2161676 | Msa0143250:intron | 55.0% | |
| TGGGCCTGGTTTACGTTGCA+GGG | + | chr1_4:2161664-2161683 | None:intergenic | 55.0% | |
| TGTGCGAGAAAAGGGTCGTG+TGG | - | chr1_4:2162260-2162279 | Msa0143250:intron | 55.0% | |
| ACGGAGAACCCAAGTGCAGT+TGG | - | chr1_4:2162373-2162392 | Msa0143250:intron | 55.0% | |
| GAGAACCCAAGTGCAGTTGG+TGG | - | chr1_4:2162376-2162395 | Msa0143250:intron | 55.0% | |
| CTGCAACCACCAACTGCACT+TGG | + | chr1_4:2162385-2162404 | None:intergenic | 55.0% | |
| TTGAGCGGTGGAGGAAAGTG+AGG | + | chr1_4:2162461-2162480 | None:intergenic | 55.0% | |
| GGTTCCACGTCGGGAGAAGA+AGG | + | chr1_4:2159816-2159835 | None:intergenic | 60.0% | |
| ! | GGGCCTTGGTAACTGGAGAG+TGG | - | chr1_4:2160836-2160855 | Msa0143250:intron | 60.0% |
| GTGGGCCTGGTTTACGTTGC+AGG | + | chr1_4:2161665-2161684 | None:intergenic | 60.0% | |
| CGGTGGAGGAAAGTGAGGAG+GGG | + | chr1_4:2162456-2162475 | None:intergenic | 60.0% | |
| GCGGTGGAGGAAAGTGAGGA+GGG | + | chr1_4:2162457-2162476 | None:intergenic | 60.0% | |
| AGCGGTGGAGGAAAGTGAGG+AGG | + | chr1_4:2162458-2162477 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2159624 | 2162682 | 2159624 | ID=Msa0143250;Name=Msa0143250 |
| chr1_4 | mRNA | 2159624 | 2162682 | 2159624 | ID=Msa0143250-mRNA-1;Parent=Msa0143250;Name=Msa0143250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|1|1|1|1|4|247|160 |
| chr1_4 | exon | 2159624 | 2159936 | 2159624 | ID=Msa0143250-mRNA-1:exon:852;Parent=Msa0143250-mRNA-1 |
| chr1_4 | exon | 2161789 | 2161897 | 2161789 | ID=Msa0143250-mRNA-1:exon:851;Parent=Msa0143250-mRNA-1 |
| chr1_4 | exon | 2162004 | 2162134 | 2162004 | ID=Msa0143250-mRNA-1:exon:850;Parent=Msa0143250-mRNA-1 |
| chr1_4 | exon | 2162443 | 2162682 | 2162443 | ID=Msa0143250-mRNA-1:exon:849;Parent=Msa0143250-mRNA-1 |
| chr1_4 | five_prime_UTR | 2162620 | 2162682 | 2162620 | ID=Msa0143250-mRNA-1:five_prime_utr;Parent=Msa0143250-mRNA-1 |
| chr1_4 | CDS | 2162443 | 2162619 | 2162443 | ID=Msa0143250-mRNA-1:cds;Parent=Msa0143250-mRNA-1 |
| chr1_4 | CDS | 2162004 | 2162134 | 2162004 | ID=Msa0143250-mRNA-1:cds;Parent=Msa0143250-mRNA-1 |
| chr1_4 | CDS | 2161789 | 2161897 | 2161789 | ID=Msa0143250-mRNA-1:cds;Parent=Msa0143250-mRNA-1 |
| chr1_4 | CDS | 2159871 | 2159936 | 2159871 | ID=Msa0143250-mRNA-1:cds;Parent=Msa0143250-mRNA-1 |
| chr1_4 | three_prime_UTR | 2159624 | 2159870 | 2159624 | ID=Msa0143250-mRNA-1:three_prime_utr;Parent=Msa0143250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
