Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386220 | XP_003625821.1 | 95.652 | 161 | 6 | 1 | 1 | 161 | 1 | 160 | 4.09e-108 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386220 | sp|Q8LCY2|ISAM2_ARATH | 61.250 | 160 | 59 | 2 | 1 | 160 | 1 | 157 | 2.24e-61 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386220 | G7KQU7 | 95.652 | 161 | 6 | 1 | 1 | 161 | 1 | 160 | 1.95e-108 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0817260 | Msa1386220 | 0.810450 | 1.145528e-50 | -8.615850e-47 |
| Msa0143250 | Msa1386220 | 0.895371 | 1.021707e-75 | -8.615850e-47 |
| Msa0426810 | Msa1386220 | 0.801377 | 9.265274e-49 | -8.615850e-47 |
| Msa0302650 | Msa1386220 | 0.811972 | 5.358777e-51 | -8.615850e-47 |
| Msa0851800 | Msa1386220 | 0.817851 | 2.660906e-52 | -8.615850e-47 |
| Msa0942730 | Msa1386220 | 0.805614 | 1.226327e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386220 | MtrunA17_Chr7g0266291 | 95.652 | 161 | 6 | 1 | 1 | 161 | 1 | 160 | 3.76e-112 | 315 |
| Msa1386220 | MtrunA17_Chr1g0178671 | 34.524 | 84 | 54 | 1 | 77 | 160 | 44 | 126 | 3.00e-14 | 65.9 |
| Msa1386220 | MtrunA17_Chr8g0383271 | 32.381 | 105 | 66 | 3 | 52 | 154 | 70 | 171 | 4.00e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386220 | AT5G03905.1 | 61.250 | 160 | 59 | 2 | 1 | 160 | 1 | 157 | 2.28e-62 | 189 |
| Msa1386220 | AT5G03905.2 | 49.524 | 105 | 50 | 2 | 1 | 105 | 1 | 102 | 2.45e-24 | 91.7 |
| Msa1386220 | AT2G16710.1 | 34.146 | 82 | 53 | 1 | 77 | 158 | 45 | 125 | 3.78e-13 | 63.2 |
| Msa1386220 | AT2G36260.1 | 37.037 | 81 | 49 | 2 | 77 | 157 | 28 | 106 | 7.79e-12 | 59.3 |
| Msa1386220 | AT2G16710.3 | 31.818 | 88 | 53 | 2 | 77 | 158 | 45 | 131 | 4.40e-11 | 58.2 |
Find 46 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCTGTTCTATTATCTTT+TGG | 0.239982 | tig0020787:-108368 | Msa1386220:three_prime_UTR |
| TGTAATGGTAATAAATTATC+AGG | 0.291250 | tig0020787:-108401 | Msa1386220:three_prime_UTR |
| CAGTTGTAAAAGTTCCTTCA+TGG | 0.367289 | tig0020787:-108607 | Msa1386220:CDS |
| TGAGAAGGAAGGAATTAAAC+TGG | 0.374459 | tig0020787:-110586 | Msa1386220:CDS |
| CTGCAACCACCAACTGCACT+TGG | 0.390122 | tig0020787:+108627 | None:intergenic |
| GGAACAGAAAATGAAGGAAT+TGG | 0.403267 | tig0020787:-110836 | Msa1386220:intron |
| ATAGAAACCGGTGGATGTTC+AGG | 0.446339 | tig0020787:-110769 | Msa1386220:CDS |
| GCGGTGGAGGAAAGTGAGGA+GGG | 0.446347 | tig0020787:+108555 | None:intergenic |
| GAAACAGTAGTTAGCTATCT+TGG | 0.449743 | tig0020787:-108583 | Msa1386220:exon |
| GCACCAAAAGATAATAGAAC+AGG | 0.462067 | tig0020787:+108365 | None:intergenic |
| ATGTGGACAGGTTCCACGTC+GGG | 0.463532 | tig0020787:+111181 | None:intergenic |
| ACAGAGTCAACTCAGATGAT+AGG | 0.477854 | tig0020787:-110720 | Msa1386220:intron |
| GTAACATACAGTTGTTGTAA+TGG | 0.499420 | tig0020787:-108416 | Msa1386220:three_prime_UTR |
| AATCACACCATTGATGTCTC+AGG | 0.504098 | tig0020787:+111353 | None:intergenic |
| TCCACCGGATGATGATTCAC+TGG | 0.509565 | tig0020787:+110810 | None:intergenic |
| AGATGTGGCATGGTGAAGAA+TGG | 0.513237 | tig0020787:+111216 | None:intergenic |
| CTTCGTTTAAGCATAGAAAC+CGG | 0.525008 | tig0020787:-110781 | Msa1386220:CDS |
| TGTCGAGGAGCTAATCCGTT+CGG | 0.527854 | tig0020787:-110514 | Msa1386220:CDS |
| AATAAACATTTGAGCGGTGG+AGG | 0.528089 | tig0020787:+108542 | None:intergenic |
| GGTTCCACGTCGGGAGAAGA+AGG | 0.530859 | tig0020787:+111190 | None:intergenic |
| TCGAAGACTCGCTCCATCGT+TGG | 0.532351 | tig0020787:-111302 | Msa1386220:CDS |
| ATTTCATACGACTTTGTGAA+AGG | 0.535942 | tig0020787:-110552 | Msa1386220:CDS |
| TTCACCTTCTTCTCCCGACG+TGG | 0.537237 | tig0020787:-111194 | Msa1386220:CDS |
| AGCGGTGGAGGAAAGTGAGG+AGG | 0.553032 | tig0020787:+108554 | None:intergenic |
| GATGCCAGTGAATCATCATC+CGG | 0.561795 | tig0020787:-110814 | Msa1386220:CDS |
| TGAAATCGTGCTGCCAACGA+TGG | 0.563513 | tig0020787:+111289 | None:intergenic |
| TAACTACTGTTTCACCATGA+AGG | 0.567622 | tig0020787:+108593 | None:intergenic |
| CGTTGGCAGCACGATTTCAA+CGG | 0.568585 | tig0020787:-111285 | Msa1386220:CDS |
| GAATGTGGAACAGAAAATGA+AGG | 0.569964 | tig0020787:-110842 | Msa1386220:intron |
| AGAAGATCCTGAGACATCAA+TGG | 0.572109 | tig0020787:-111360 | Msa1386220:five_prime_UTR |
| CATAGTATAATCTAGTTCGA+CGG | 0.575888 | tig0020787:+108519 | None:intergenic |
| TGCAACCACCAACTGCACTT+GGG | 0.581343 | tig0020787:+108628 | None:intergenic |
| CGGAATAAACATTTGAGCGG+TGG | 0.596422 | tig0020787:+108539 | None:intergenic |
| CTGAAATCCTGAACATCCAC+CGG | 0.596753 | tig0020787:+110762 | None:intergenic |
| CGGTGGAGGAAAGTGAGGAG+GGG | 0.602223 | tig0020787:+108556 | None:intergenic |
| ACGGAGAACCCAAGTGCAGT+TGG | 0.605079 | tig0020787:-108636 | Msa1386220:CDS |
| GAGAACCCAAGTGCAGTTGG+TGG | 0.609330 | tig0020787:-108633 | Msa1386220:CDS |
| CGCAACTGTTGATTATGTCG+AGG | 0.618120 | tig0020787:-110529 | Msa1386220:CDS |
| TTGAGCGGTGGAGGAAAGTG+AGG | 0.625815 | tig0020787:+108551 | None:intergenic |
| CGTTTAAGCATAGAAACCGG+TGG | 0.638957 | tig0020787:-110778 | Msa1386220:CDS |
| GACTTACTATGAAAGCCGAA+CGG | 0.642245 | tig0020787:+110499 | None:intergenic |
| GGGAGAAGAAGGTGAAGATG+TGG | 0.644162 | tig0020787:+111201 | None:intergenic |
| AAGAAGGTGAAGATGTGGCA+TGG | 0.649445 | tig0020787:+111206 | None:intergenic |
| GCCAGTGAATCATCATCCGG+TGG | 0.654118 | tig0020787:-110811 | Msa1386220:CDS |
| CGACGGAATAAACATTTGAG+CGG | 0.683940 | tig0020787:+108536 | None:intergenic |
| TATGTGGACAGGTTCCACGT+CGG | 0.705696 | tig0020787:+111180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAATACATTTCAAAATT+TGG | - | tig0020787:108653-108672 | Msa1386220:intron | 15.0% |
| !! | CAATTACATTACATATATAA+TGG | + | tig0020787:108843-108862 | None:intergenic | 15.0% |
| !! | TTATAATTTATAAAAGACAC+TGG | + | tig0020787:109094-109113 | None:intergenic | 15.0% |
| !!! | ACCTTTTTATAATTTTAGTA+TGG | - | tig0020787:109359-109378 | Msa1386220:intron | 15.0% |
| !! | ACCATACTAAAATTATAAAA+AGG | + | tig0020787:109363-109382 | None:intergenic | 15.0% |
| !!! | TTTCAATACCTTTTAATTTT+GGG | + | tig0020787:110644-110663 | None:intergenic | 15.0% |
| !!! | TTTTCAATACCTTTTAATTT+TGG | + | tig0020787:110645-110664 | None:intergenic | 15.0% |
| !! | TACATTTCAAAATTTGGATT+AGG | - | tig0020787:108659-108678 | Msa1386220:intron | 20.0% |
| !!! | ATTTCAGTATGCTTTTAATT+TGG | - | tig0020787:108985-109004 | Msa1386220:intron | 20.0% |
| !! | TGAAAAAAAATTCTTGAACA+GGG | + | tig0020787:109839-109858 | None:intergenic | 20.0% |
| !! | TTGAAAAAAAATTCTTGAAC+AGG | + | tig0020787:109840-109859 | None:intergenic | 20.0% |
| !! | TTTCAAAAAAAAAAACAGAG+TGG | - | tig0020787:109854-109873 | Msa1386220:intron | 20.0% |
| !! | TTCAAAAAAAAAAACAGAGT+GGG | - | tig0020787:109855-109874 | Msa1386220:intron | 20.0% |
| !! | TTGTAAAATGTATATACTCA+TGG | + | tig0020787:109907-109926 | None:intergenic | 20.0% |
| !! | TAAAACTTAACAACATATTC+AGG | - | tig0020787:109955-109974 | Msa1386220:intron | 20.0% |
| !! | TTCATCCTGAAAAATTTATA+CGG | + | tig0020787:110024-110043 | None:intergenic | 20.0% |
| !! | ATATGAAACCAAAATGTATA+AGG | + | tig0020787:110123-110142 | None:intergenic | 20.0% |
| !!! | TTATTTTGGTTTGAACTTAA+TGG | + | tig0020787:110282-110301 | None:intergenic | 20.0% |
| !! | TACTTAATAACAAAAGCAAA+GGG | + | tig0020787:110699-110718 | None:intergenic | 20.0% |
| !! | ATACTTAATAACAAAAGCAA+AGG | + | tig0020787:110700-110719 | None:intergenic | 20.0% |
| !!! | ATCATTTTCGTAATATAAGA+AGG | - | tig0020787:110825-110844 | Msa1386220:CDS | 20.0% |
| !! | TTTATAAGTTATGACATTGA+AGG | - | tig0020787:111018-111037 | Msa1386220:intron | 20.0% |
| !! | AAAATAAATGTAAGTTTGTC+TGG | + | tig0020787:111056-111075 | None:intergenic | 20.0% |
| !!! | ACAAACTTACATTTATTTTC+TGG | - | tig0020787:111057-111076 | Msa1386220:intron | 20.0% |
| !!! | AATCAATCAATTGTTTTTTG+AGG | + | tig0020787:111254-111273 | None:intergenic | 20.0% |
| !! | TGTAATGGTAATAAATTATC+AGG | - | tig0020787:111330-111349 | Msa1386220:exon | 20.0% |
| ! | AAAAAGAGCTTATAAGATTC+TGG | + | tig0020787:108474-108493 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTACAAACAAGT+TGG | + | tig0020787:108869-108888 | None:intergenic | 25.0% |
| ! | TTTGTACAACTTAATGAATG+TGG | - | tig0020787:108874-108893 | Msa1386220:intron | 25.0% |
| !!! | ATTTTAGTATGGTACTAATC+AGG | - | tig0020787:109370-109389 | Msa1386220:intron | 25.0% |
| ! | AAATTGTTAATGTACACTCA+TGG | + | tig0020787:109739-109758 | None:intergenic | 25.0% |
| ! | AGGTTCAGATTCAAAATATA+AGG | - | tig0020787:109975-109994 | Msa1386220:intron | 25.0% |
| ! | AAAACTTCAAACATTGAACA+GGG | + | tig0020787:110001-110020 | None:intergenic | 25.0% |
| !! | GTTTTCCGTATAAATTTTTC+AGG | - | tig0020787:110016-110035 | Msa1386220:intron | 25.0% |
| !!! | AAAAACCTAAAAGCATCTAA+AGG | + | tig0020787:110093-110112 | None:intergenic | 25.0% |
| ! | ATGTATCATTTCTTGTTAAG+TGG | - | tig0020787:110178-110197 | Msa1386220:intron | 25.0% |
| ! | AAATTACAAAACTGACATGT+GGG | + | tig0020787:110414-110433 | None:intergenic | 25.0% |
| ! | TATGTTGCTCTACATAATTT+AGG | + | tig0020787:110465-110484 | None:intergenic | 25.0% |
| ! | TAAATTATGTAGAGCAACAT+AGG | - | tig0020787:110464-110483 | Msa1386220:intron | 25.0% |
| ! | CATTCTTTAATCAAAGTTCA+TGG | + | tig0020787:110516-110535 | None:intergenic | 25.0% |
| ! | CTATTTAGTTAGAGTAACAT+GGG | + | tig0020787:110579-110598 | None:intergenic | 25.0% |
| ! | TTAATCTCACATAAATAGAG+CGG | + | tig0020787:110609-110628 | None:intergenic | 25.0% |
| !! | AGTTTTCACCCAAAATTAAA+AGG | - | tig0020787:110633-110652 | Msa1386220:intron | 25.0% |
| !!! | TATTTTCTGGTTTCATTTTC+AGG | - | tig0020787:111070-111089 | Msa1386220:intron | 25.0% |
| ! | TCTCTCAATTGCTTGTTAAT+TGG | - | tig0020787:108605-108624 | Msa1386220:CDS | 30.0% |
| TTATGACAGTTATGCAGATA+GGG | - | tig0020787:108746-108765 | Msa1386220:intron | 30.0% | |
| AGTCAGATTTCAATGTTGAT+AGG | - | tig0020787:109049-109068 | Msa1386220:intron | 30.0% | |
| ATTTCATACGACTTTGTGAA+AGG | - | tig0020787:109179-109198 | Msa1386220:intron | 30.0% | |
| AAGAATGGGTATGTTATGTT+AGG | - | tig0020787:109701-109720 | Msa1386220:intron | 30.0% | |
| ! | AACCATATTCAAGTTCAGAT+TGG | - | tig0020787:109795-109814 | Msa1386220:intron | 30.0% |
| TTCCAATCTGAACTTGAATA+TGG | + | tig0020787:109800-109819 | None:intergenic | 30.0% | |
| ATTGGAATCCAAAATCAACA+AGG | - | tig0020787:109813-109832 | Msa1386220:intron | 30.0% | |
| GAAAACTTCAAACATTGAAC+AGG | + | tig0020787:110002-110021 | None:intergenic | 30.0% | |
| ! | TTACCATGCCTTATACATTT+TGG | - | tig0020787:110112-110131 | Msa1386220:intron | 30.0% |
| AAACCAAAATGTATAAGGCA+TGG | + | tig0020787:110118-110137 | None:intergenic | 30.0% | |
| TAACAAGAAATGATACATGC+TGG | + | tig0020787:110176-110195 | None:intergenic | 30.0% | |
| !! | TAATGTTGGTTACATTTTCC+AGG | + | tig0020787:110324-110343 | None:intergenic | 30.0% |
| ! | GAAGCACTTTATTCTAATGT+TGG | + | tig0020787:110338-110357 | None:intergenic | 30.0% |
| CAAATTACAAAACTGACATG+TGG | + | tig0020787:110415-110434 | None:intergenic | 30.0% | |
| GCTATTTAGTTAGAGTAACA+TGG | + | tig0020787:110580-110599 | None:intergenic | 30.0% | |
| TACTCTAACTAAATAGCCTA+AGG | - | tig0020787:110583-110602 | Msa1386220:CDS | 30.0% | |
| ! | CAATGATGTTTTGTGTTTGA+TGG | - | tig0020787:110801-110820 | Msa1386220:CDS | 30.0% |
| ! | CATAGTATAATCTAGTTCGA+CGG | + | tig0020787:111215-111234 | None:intergenic | 30.0% |
| GTAACATACAGTTGTTGTAA+TGG | - | tig0020787:111315-111334 | Msa1386220:CDS | 30.0% | |
| ! | TAGCCTGTTCTATTATCTTT+TGG | - | tig0020787:111363-111382 | Msa1386220:five_prime_UTR | 30.0% |
| !! | TTGGATTAGGTTTTCGTTGA+TGG | - | tig0020787:108672-108691 | Msa1386220:intron | 35.0% |
| ! | TATGAGAAGCATATGCGATA+AGG | + | tig0020787:108699-108718 | None:intergenic | 35.0% |
| GTTATGACAGTTATGCAGAT+AGG | - | tig0020787:108745-108764 | Msa1386220:intron | 35.0% | |
| GAATGTGGAACAGAAAATGA+AGG | - | tig0020787:108889-108908 | Msa1386220:intron | 35.0% | |
| GGAACAGAAAATGAAGGAAT+TGG | - | tig0020787:108895-108914 | Msa1386220:intron | 35.0% | |
| !! | TAAACGAAGCATTTTTCCAC+CGG | + | tig0020787:108939-108958 | None:intergenic | 35.0% |
| CTTCGTTTAAGCATAGAAAC+CGG | - | tig0020787:108950-108969 | Msa1386220:intron | 35.0% | |
| TTGAAATCTGACTATCCAAG+TGG | + | tig0020787:109042-109061 | None:intergenic | 35.0% | |
| !! | TATTGCCAGAGTTTTTGAGA+AGG | - | tig0020787:109130-109149 | Msa1386220:intron | 35.0% |
| TGAGAAGGAAGGAATTAAAC+TGG | - | tig0020787:109145-109164 | Msa1386220:intron | 35.0% | |
| ATCAGGTAACGAAGTTTCTT+AGG | - | tig0020787:109387-109406 | Msa1386220:intron | 35.0% | |
| TCCTAAAATCTCAAGCTGAT+AGG | + | tig0020787:109541-109560 | None:intergenic | 35.0% | |
| !! | CTTGAGATTTTAGGAGAGTT+GGG | - | tig0020787:109546-109565 | Msa1386220:intron | 35.0% |
| TACCCATTCTTGTAAAGAGT+GGG | + | tig0020787:109692-109711 | None:intergenic | 35.0% | |
| ATACCCATTCTTGTAAAGAG+TGG | + | tig0020787:109693-109712 | None:intergenic | 35.0% | |
| ! | TGGACGATTTTATATCCCAA+CGG | + | tig0020787:109887-109906 | None:intergenic | 35.0% |
| GATGAACCTGTTGTATATAG+AGG | - | tig0020787:110038-110057 | Msa1386220:intron | 35.0% | |
| AAGTCACCTCTATATACAAC+AGG | + | tig0020787:110047-110066 | None:intergenic | 35.0% | |
| !! | ATCTAAAGGCATTGTTTGGA+TGG | + | tig0020787:110079-110098 | None:intergenic | 35.0% |
| !! | AAGCATCTAAAGGCATTGTT+TGG | + | tig0020787:110083-110102 | None:intergenic | 35.0% |
| ! | CAATGCCTTTAGATGCTTTT+AGG | - | tig0020787:110085-110104 | Msa1386220:intron | 35.0% |
| AAGTGTGCCAAAAACCTAAA+CGG | + | tig0020787:110259-110278 | None:intergenic | 35.0% | |
| !!! | CTCTAGTGGTAGCTTTATTT+TGG | + | tig0020787:110296-110315 | None:intergenic | 35.0% |
| AAGTGCTTCTTGCAAAATTG+TGG | - | tig0020787:110349-110368 | Msa1386220:intron | 35.0% | |
| CATAGGTACTTCTGATCTTA+AGG | - | tig0020787:110481-110500 | Msa1386220:intron | 35.0% | |
| TCACATCGACATACAATCTA+AGG | + | tig0020787:110904-110923 | None:intergenic | 35.0% | |
| ACTGTGATATCCAATGGTAT+TGG | - | tig0020787:110943-110962 | Msa1386220:intron | 35.0% | |
| ! | GATATCCAATGGTATTGGAA+TGG | - | tig0020787:110948-110967 | Msa1386220:intron | 35.0% |
| ACATTCCATTCCAATACCAT+TGG | + | tig0020787:110956-110975 | None:intergenic | 35.0% | |
| CAGTTGTAAAAGTTCCTTCA+TGG | - | tig0020787:111124-111143 | Msa1386220:intron | 35.0% | |
| TAACTACTGTTTCACCATGA+AGG | + | tig0020787:111141-111160 | None:intergenic | 35.0% | |
| GAAACAGTAGTTAGCTATCT+TGG | - | tig0020787:111148-111167 | Msa1386220:intron | 35.0% | |
| GCACCAAAAGATAATAGAAC+AGG | + | tig0020787:111369-111388 | None:intergenic | 35.0% | |
| AGAAGATCCTGAGACATCAA+TGG | - | tig0020787:108371-108390 | Msa1386220:three_prime_UTR | 40.0% | |
| AATCACACCATTGATGTCTC+AGG | + | tig0020787:108381-108400 | None:intergenic | 40.0% | |
| AGTTCATGTTGTACTGTACC+CGG | - | tig0020787:108800-108819 | Msa1386220:intron | 40.0% | |
| ACAGAGTCAACTCAGATGAT+AGG | - | tig0020787:109011-109030 | Msa1386220:intron | 40.0% | |
| AGATGATAGGTACTACCACT+TGG | - | tig0020787:109024-109043 | Msa1386220:intron | 40.0% | |
| GACACTGGTGTATCAACATA+TGG | + | tig0020787:109079-109098 | None:intergenic | 40.0% | |
| TCCTTCCTTCTCAAAAACTC+TGG | + | tig0020787:109138-109157 | None:intergenic | 40.0% | |
| GACTTACTATGAAAGCCGAA+CGG | + | tig0020787:109235-109254 | None:intergenic | 40.0% | |
| ACTTGTAACCATGTGTATGC+TGG | - | tig0020787:109261-109280 | Msa1386220:intron | 40.0% | |
| AATCTCAAGCTGATAGGCAA+AGG | + | tig0020787:109535-109554 | None:intergenic | 40.0% | |
| ! | GCCTATCAGCTTGAGATTTT+AGG | - | tig0020787:109537-109556 | Msa1386220:intron | 40.0% |
| !! | GCTTGAGATTTTAGGAGAGT+TGG | - | tig0020787:109545-109564 | Msa1386220:intron | 40.0% |
| AAGCCCACTCTTTACAAGAA+TGG | - | tig0020787:109686-109705 | Msa1386220:intron | 40.0% | |
| AGCCCACTCTTTACAAGAAT+GGG | - | tig0020787:109687-109706 | Msa1386220:intron | 40.0% | |
| TTCAAAGCAAAAGTTCCGTC+AGG | + | tig0020787:110220-110239 | None:intergenic | 40.0% | |
| CCAAAAACCTAAACGGTGTT+GGG | + | tig0020787:110252-110271 | None:intergenic | 40.0% | |
| ! | TTTTCCAGGCATATCTCTAG+TGG | + | tig0020787:110310-110329 | None:intergenic | 40.0% |
| CTTGCAAAATTGTGGTCAAG+AGG | - | tig0020787:110357-110376 | Msa1386220:intron | 40.0% | |
| ATATCACCAAACAGTGGAGA+AGG | + | tig0020787:110556-110575 | None:intergenic | 40.0% | |
| CCAAATAAGTGAATCACAGC+AGG | + | tig0020787:110748-110767 | None:intergenic | 40.0% | |
| CCTGCTGTGATTCACTTATT+TGG | - | tig0020787:110745-110764 | Msa1386220:CDS | 40.0% | |
| GATGCAACTGTGATATCCAA+TGG | - | tig0020787:110937-110956 | Msa1386220:intron | 40.0% | |
| !!! | CTGGTTTCATTTTCAGGTGA+CGG | - | tig0020787:111076-111095 | Msa1386220:intron | 40.0% |
| AATAAACATTTGAGCGGTGG+AGG | + | tig0020787:111192-111211 | None:intergenic | 40.0% | |
| CGACGGAATAAACATTTGAG+CGG | + | tig0020787:111198-111217 | None:intergenic | 40.0% | |
| AGATGTGGCATGGTGAAGAA+TGG | + | tig0020787:108518-108537 | None:intergenic | 45.0% | |
| AAGAAGGTGAAGATGTGGCA+TGG | + | tig0020787:108528-108547 | None:intergenic | 45.0% | |
| ! | CAGTTTTCGGTTATGTGGAC+AGG | + | tig0020787:108565-108584 | None:intergenic | 45.0% |
| ! | GAACGCAGTTTTCGGTTATG+TGG | + | tig0020787:108570-108589 | None:intergenic | 45.0% |
| ! | GCATACACGAACGCAGTTTT+CGG | + | tig0020787:108578-108597 | None:intergenic | 45.0% |
| GTTCATGTTGTACTGTACCC+GGG | - | tig0020787:108801-108820 | Msa1386220:intron | 45.0% | |
| GATGCCAGTGAATCATCATC+CGG | - | tig0020787:108917-108936 | Msa1386220:intron | 45.0% | |
| CGTTTAAGCATAGAAACCGG+TGG | - | tig0020787:108953-108972 | Msa1386220:intron | 45.0% | |
| ATAGAAACCGGTGGATGTTC+AGG | - | tig0020787:108962-108981 | Msa1386220:intron | 45.0% | |
| CTGAAATCCTGAACATCCAC+CGG | + | tig0020787:108972-108991 | None:intergenic | 45.0% | |
| !! | GCCAGAGTTTTTGAGAAGGA+AGG | - | tig0020787:109134-109153 | Msa1386220:intron | 45.0% |
| ! | CGCAACTGTTGATTATGTCG+AGG | - | tig0020787:109202-109221 | Msa1386220:intron | 45.0% |
| CACAAACACCAGCATACACA+TGG | + | tig0020787:109272-109291 | None:intergenic | 45.0% | |
| CATGTGTATGCTGGTGTTTG+TGG | - | tig0020787:109270-109289 | Msa1386220:intron | 45.0% | |
| TGCACAGGAATCACAGAGAA+AGG | + | tig0020787:109327-109346 | None:intergenic | 45.0% | |
| GATTCCTGTGCACTACAACA+TGG | - | tig0020787:109335-109354 | Msa1386220:intron | 45.0% | |
| !! | ATTTTAGGAGAGTTGGGCCT+TGG | - | tig0020787:109552-109571 | Msa1386220:intron | 45.0% |
| AATCCACTCTCCAGTTACCA+AGG | + | tig0020787:109572-109591 | None:intergenic | 45.0% | |
| !!! | GAACAGGGCCTTGTTGATTT+TGG | + | tig0020787:109824-109843 | None:intergenic | 45.0% |
| TGATGCAATTGCTCTCCTGA+CGG | - | tig0020787:110202-110221 | Msa1386220:intron | 45.0% | |
| !! | CCCAACACCGTTTAGGTTTT+TGG | - | tig0020787:110249-110268 | Msa1386220:intron | 45.0% |
| GCCAAAAACCTAAACGGTGT+TGG | + | tig0020787:110253-110272 | None:intergenic | 45.0% | |
| TTGACACCTTCTCCACTGTT+TGG | - | tig0020787:110547-110566 | Msa1386220:CDS | 45.0% | |
| CATGGGATATCACCAAACAG+TGG | + | tig0020787:110562-110581 | None:intergenic | 45.0% | |
| CACATAAATAGAGCGGCCTT+AGG | + | tig0020787:110602-110621 | None:intergenic | 45.0% | |
| AAGTGAATCACAGCAGGCTA+TGG | + | tig0020787:110742-110761 | None:intergenic | 45.0% | |
| CATTAACACGCCCTTCAAAG+CGG | - | tig0020787:110850-110869 | Msa1386220:intron | 45.0% | |
| !! | TGCGTTTTGAACCAAGTTCG+AGG | - | tig0020787:110877-110896 | Msa1386220:intron | 45.0% |
| CAATCTAAGGACCTCGAACT+TGG | + | tig0020787:110891-110910 | None:intergenic | 45.0% | |
| TGTCATGAGTGTGCGAGAAA+AGG | - | tig0020787:110973-110992 | Msa1386220:intron | 45.0% | |
| GTCATGAGTGTGCGAGAAAA+GGG | - | tig0020787:110974-110993 | Msa1386220:intron | 45.0% | |
| CGGAATAAACATTTGAGCGG+TGG | + | tig0020787:111195-111214 | None:intergenic | 45.0% | |
| TGAAATCGTGCTGCCAACGA+TGG | + | tig0020787:108445-108464 | None:intergenic | 50.0% | |
| CGTTGGCAGCACGATTTCAA+CGG | - | tig0020787:108446-108465 | Msa1386220:three_prime_UTR | 50.0% | |
| GGGAGAAGAAGGTGAAGATG+TGG | + | tig0020787:108533-108552 | None:intergenic | 50.0% | |
| TATGTGGACAGGTTCCACGT+CGG | + | tig0020787:108554-108573 | None:intergenic | 50.0% | |
| TGTTGTACTGTACCCGGGTT+AGG | - | tig0020787:108806-108825 | Msa1386220:intron | 50.0% | |
| GTACGCATAGTTCCTAACCC+GGG | + | tig0020787:108821-108840 | None:intergenic | 50.0% | |
| GGTACGCATAGTTCCTAACC+CGG | + | tig0020787:108822-108841 | None:intergenic | 50.0% | |
| TCCACCGGATGATGATTCAC+TGG | + | tig0020787:108924-108943 | None:intergenic | 50.0% | |
| TGTCGAGGAGCTAATCCGTT+CGG | - | tig0020787:109217-109236 | Msa1386220:intron | 50.0% | |
| GGTTCCATGTTGTAGTGCAC+AGG | + | tig0020787:109342-109361 | None:intergenic | 50.0% | |
| ACAGAGTGGGTATGTTCCGT+TGG | - | tig0020787:109868-109887 | Msa1386220:intron | 50.0% | |
| CAGAGTGGGTATGTTCCGTT+GGG | - | tig0020787:109869-109888 | Msa1386220:intron | 50.0% | |
| ACTCTCTCCCAACACCGTTT+AGG | - | tig0020787:110242-110261 | Msa1386220:intron | 50.0% | |
| GCTACCACTAGAGATATGCC+TGG | - | tig0020787:110303-110322 | Msa1386220:intron | 50.0% | |
| ACAAAACTGACATGTGGGCC+TGG | + | tig0020787:110409-110428 | None:intergenic | 50.0% | |
| !! | AACGCACATGCCGCTTTGAA+GGG | + | tig0020787:110863-110882 | None:intergenic | 50.0% |
| !! | AAACGCACATGCCGCTTTGA+AGG | + | tig0020787:110864-110883 | None:intergenic | 50.0% |
| TGCAACCACCAACTGCACTT+GGG | + | tig0020787:111106-111125 | None:intergenic | 50.0% | |
| TCGAAGACTCGCTCCATCGT+TGG | - | tig0020787:108429-108448 | Msa1386220:three_prime_UTR | 55.0% | |
| TTCACCTTCTTCTCCCGACG+TGG | - | tig0020787:108537-108556 | Msa1386220:three_prime_UTR | 55.0% | |
| ATGTGGACAGGTTCCACGTC+GGG | + | tig0020787:108553-108572 | None:intergenic | 55.0% | |
| GCCAGTGAATCATCATCCGG+TGG | - | tig0020787:108920-108939 | Msa1386220:intron | 55.0% | |
| ! | GAGAGTTGGGCCTTGGTAAC+TGG | - | tig0020787:109559-109578 | Msa1386220:intron | 55.0% |
| GGTTTACGTTGCAGGGCTAC+AGG | + | tig0020787:110388-110407 | None:intergenic | 55.0% | |
| GTAGCCCTGCAACGTAAACC+AGG | - | tig0020787:110388-110407 | Msa1386220:intron | 55.0% | |
| TGGGCCTGGTTTACGTTGCA+GGG | + | tig0020787:110395-110414 | None:intergenic | 55.0% | |
| TGTGCGAGAAAAGGGTCGTG+TGG | - | tig0020787:110982-111001 | Msa1386220:intron | 55.0% | |
| ACGGAGAACCCAAGTGCAGT+TGG | - | tig0020787:111095-111114 | Msa1386220:intron | 55.0% | |
| GAGAACCCAAGTGCAGTTGG+TGG | - | tig0020787:111098-111117 | Msa1386220:intron | 55.0% | |
| CTGCAACCACCAACTGCACT+TGG | + | tig0020787:111107-111126 | None:intergenic | 55.0% | |
| TTGAGCGGTGGAGGAAAGTG+AGG | + | tig0020787:111183-111202 | None:intergenic | 55.0% | |
| GGTTCCACGTCGGGAGAAGA+AGG | + | tig0020787:108544-108563 | None:intergenic | 60.0% | |
| ! | GGGCCTTGGTAACTGGAGAG+TGG | - | tig0020787:109566-109585 | Msa1386220:intron | 60.0% |
| GTGGGCCTGGTTTACGTTGC+AGG | + | tig0020787:110396-110415 | None:intergenic | 60.0% | |
| CGGTGGAGGAAAGTGAGGAG+GGG | + | tig0020787:111178-111197 | None:intergenic | 60.0% | |
| GCGGTGGAGGAAAGTGAGGA+GGG | + | tig0020787:111179-111198 | None:intergenic | 60.0% | |
| AGCGGTGGAGGAAAGTGAGG+AGG | + | tig0020787:111180-111199 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020787 | gene | 108349 | 111404 | 108349 | ID=Msa1386220;Name=Msa1386220 |
| tig0020787 | mRNA | 108349 | 111404 | 108349 | ID=Msa1386220-mRNA-1;Parent=Msa1386220;Name=Msa1386220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=63|1|1|1|1|1|4|247|161 |
| tig0020787 | exon | 108349 | 108661 | 108349 | ID=Msa1386220-mRNA-1:exon:10036;Parent=Msa1386220-mRNA-1 |
| tig0020787 | exon | 110506 | 110614 | 110506 | ID=Msa1386220-mRNA-1:exon:10035;Parent=Msa1386220-mRNA-1 |
| tig0020787 | exon | 110721 | 110851 | 110721 | ID=Msa1386220-mRNA-1:exon:10034;Parent=Msa1386220-mRNA-1 |
| tig0020787 | exon | 111162 | 111404 | 111162 | ID=Msa1386220-mRNA-1:exon:10033;Parent=Msa1386220-mRNA-1 |
| tig0020787 | five_prime_UTR | 111342 | 111404 | 111342 | ID=Msa1386220-mRNA-1:five_prime_utr;Parent=Msa1386220-mRNA-1 |
| tig0020787 | CDS | 111162 | 111341 | 111162 | ID=Msa1386220-mRNA-1:cds;Parent=Msa1386220-mRNA-1 |
| tig0020787 | CDS | 110721 | 110851 | 110721 | ID=Msa1386220-mRNA-1:cds;Parent=Msa1386220-mRNA-1 |
| tig0020787 | CDS | 110506 | 110614 | 110506 | ID=Msa1386220-mRNA-1:cds;Parent=Msa1386220-mRNA-1 |
| tig0020787 | CDS | 108596 | 108661 | 108596 | ID=Msa1386220-mRNA-1:cds;Parent=Msa1386220-mRNA-1 |
| tig0020787 | three_prime_UTR | 108349 | 108595 | 108349 | ID=Msa1386220-mRNA-1:three_prime_utr;Parent=Msa1386220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
