Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851800 | XP_003615380.1 | 97.070 | 273 | 8 | 0 | 1 | 273 | 39 | 311 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851800 | sp|Q9FGF0|PGML1_ARATH | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.49e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851800 | G7K608 | 97.070 | 273 | 8 | 0 | 1 | 273 | 39 | 311 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0733040 | Msa0851800 | 0.874275 | 7.667324e-68 | -8.615850e-47 |
| Msa0143250 | Msa0851800 | 0.805413 | 1.351297e-49 | -8.615850e-47 |
| Msa0851800 | Msa1386220 | 0.817851 | 2.660906e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851800 | MtrunA17_Chr5g0428091 | 97.070 | 273 | 8 | 0 | 1 | 273 | 39 | 311 | 0.0 | 560 |
| Msa0851800 | MtrunA17_Chr3g0141101 | 74.545 | 275 | 68 | 2 | 1 | 273 | 51 | 325 | 1.75e-153 | 431 |
| Msa0851800 | MtrunA17_Chr4g0049431 | 66.545 | 275 | 90 | 2 | 1 | 273 | 1 | 275 | 3.19e-136 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851800 | AT1G58280.1 | 65.328 | 274 | 94 | 1 | 1 | 273 | 43 | 316 | 3.36e-135 | 384 |
| Msa0851800 | AT1G58280.3 | 65.328 | 274 | 94 | 1 | 1 | 273 | 28 | 301 | 6.30e-135 | 383 |
| Msa0851800 | AT1G58280.4 | 65.328 | 274 | 94 | 1 | 1 | 273 | 27 | 300 | 1.19e-134 | 382 |
| Msa0851800 | AT5G64460.4 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT5G64460.6 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT5G64460.10 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT5G64460.2 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT5G64460.1 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT5G64460.8 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT5G64460.3 | 63.370 | 273 | 99 | 1 | 1 | 272 | 1 | 273 | 1.52e-133 | 379 |
| Msa0851800 | AT1G58280.2 | 59.866 | 299 | 94 | 2 | 1 | 273 | 43 | 341 | 5.63e-129 | 370 |
| Msa0851800 | AT2G17280.1 | 63.158 | 266 | 96 | 2 | 6 | 269 | 5 | 270 | 2.28e-128 | 365 |
| Msa0851800 | AT2G17280.2 | 63.158 | 266 | 96 | 2 | 6 | 269 | 5 | 270 | 2.28e-128 | 365 |
| Msa0851800 | AT5G64460.11 | 62.393 | 234 | 87 | 1 | 40 | 272 | 1 | 234 | 5.54e-111 | 320 |
| Msa0851800 | AT5G64460.7 | 62.393 | 234 | 87 | 1 | 40 | 272 | 1 | 234 | 5.54e-111 | 320 |
| Msa0851800 | AT5G64460.9 | 62.393 | 234 | 87 | 1 | 40 | 272 | 1 | 234 | 5.54e-111 | 320 |
| Msa0851800 | AT5G64460.5 | 61.979 | 192 | 72 | 1 | 82 | 272 | 1 | 192 | 8.30e-89 | 263 |
| Msa0851800 | AT1G09935.1 | 48.780 | 246 | 105 | 2 | 6 | 250 | 3 | 228 | 2.13e-77 | 234 |
| Msa0851800 | AT1G09935.2 | 48.361 | 244 | 105 | 2 | 6 | 248 | 3 | 226 | 8.97e-77 | 233 |
| Msa0851800 | AT1G09932.3 | 44.348 | 230 | 113 | 3 | 14 | 242 | 15 | 230 | 1.93e-62 | 196 |
| Msa0851800 | AT1G09932.1 | 43.033 | 244 | 124 | 3 | 14 | 256 | 15 | 244 | 3.83e-62 | 197 |
| Msa0851800 | AT1G09932.2 | 42.194 | 237 | 122 | 3 | 21 | 256 | 15 | 237 | 5.76e-58 | 186 |
| Msa0851800 | AT1G09932.4 | 37.705 | 244 | 112 | 4 | 14 | 256 | 15 | 219 | 1.86e-44 | 150 |
Find 92 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTTCTTCTCTCTTTC+AGG | 0.088309 | 5_4:+42258967 | None:intergenic |
| CACATTTCAGTCTTAGTATT+TGG | 0.127414 | 5_4:+42258639 | None:intergenic |
| TTTAATACCCTTGGTGCTTT+TGG | 0.209673 | 5_4:-42258675 | Msa0851800:CDS |
| TTTCTTTCCACTTTATTATA+TGG | 0.231872 | 5_4:-42257650 | Msa0851800:three_prime_UTR |
| ATAGGATTATTCTTGAATTT+AGG | 0.248798 | 5_4:-42262370 | Msa0851800:five_prime_UTR |
| CCATGGTTATTGTGGATAAA+TGG | 0.257144 | 5_4:-42258102 | Msa0851800:intron |
| AAACTTCTTCATGCTTGCTT+TGG | 0.292221 | 5_4:-42262473 | Msa0851800:five_prime_UTR |
| CAAACGGCTGTTGGAGTCTT+TGG | 0.301452 | 5_4:-42259688 | Msa0851800:CDS |
| GTATACATTTGCAGTATGAT+TGG | 0.341629 | 5_4:-42258007 | Msa0851800:intron |
| TATCCTGGCAAAATTCCTTA+TGG | 0.349742 | 5_4:-42257962 | Msa0851800:CDS |
| TGGCCGAATTTCAGATTACT+AGG | 0.357653 | 5_4:+42262617 | None:intergenic |
| GAGAAGAAAGAAGAAGTTAC+TGG | 0.360840 | 5_4:-42258958 | Msa0851800:CDS |
| AATATTTCAAGGAATCTAAA+TGG | 0.364414 | 5_4:+42262421 | None:intergenic |
| TTGTGGTTTCCCCATTGTTA+AGG | 0.383995 | 5_4:-42260872 | Msa0851800:intron |
| GCAATAAATACCTTAACAAT+GGG | 0.391056 | 5_4:+42260862 | None:intergenic |
| TGACAAAACTATTTATCTCT+TGG | 0.391929 | 5_4:+42262597 | None:intergenic |
| GCTGCCAGCCAAGAGGAGTT+AGG | 0.404360 | 5_4:+42261370 | None:intergenic |
| CATGAAGAAGTTTGAACAAC+AGG | 0.414686 | 5_4:+42262483 | None:intergenic |
| AACCCTAGTAATCTGAAATT+CGG | 0.415940 | 5_4:-42262620 | Msa0851800:five_prime_UTR |
| GAGTACCGACACATGTTTCC+AGG | 0.425474 | 5_4:-42259175 | Msa0851800:CDS |
| CTTCTACATTATGAACTCCT+TGG | 0.426179 | 5_4:+42261442 | None:intergenic |
| CAATGAGAGTAACAATTGTT+TGG | 0.432244 | 5_4:+42257880 | None:intergenic |
| CAAGGAGTTCATAATGTAGA+AGG | 0.435431 | 5_4:-42261441 | Msa0851800:CDS |
| TCTCTAGTCAGTAGCATCAC+TGG | 0.439328 | 5_4:+42257928 | None:intergenic |
| GAAATATTCTTATGTTTATG+TGG | 0.443376 | 5_4:-42262406 | Msa0851800:five_prime_UTR |
| CAAAAGCATGTGAAGGCTAT+CGG | 0.447198 | 5_4:-42260918 | Msa0851800:CDS |
| TTCTACATTATGAACTCCTT+GGG | 0.448503 | 5_4:+42261443 | None:intergenic |
| TCCTCTGATGATTGAAAATG+TGG | 0.453993 | 5_4:-42259632 | Msa0851800:CDS |
| GAAACATTAATTCAAGGAAT+GGG | 0.457765 | 5_4:-42257907 | Msa0851800:three_prime_UTR |
| ACTAGAGAAACATTAATTCA+AGG | 0.460914 | 5_4:-42257913 | Msa0851800:exon |
| AATAAATTGGCAACATATGT+AGG | 0.462782 | 5_4:-42257702 | Msa0851800:three_prime_UTR |
| AGAAACATTAATTCAAGGAA+TGG | 0.465661 | 5_4:-42257908 | Msa0851800:three_prime_UTR |
| GATGCAAACCTAACTCCTCT+TGG | 0.468148 | 5_4:-42261378 | Msa0851800:CDS |
| AAAGAAGAAGTTACTGGTAG+AGG | 0.469675 | 5_4:-42258952 | Msa0851800:CDS |
| GCCAAGTGGTTGAATTTAAG+TGG | 0.471630 | 5_4:+42262505 | None:intergenic |
| AGAGCTTTGCCGAGAGCAAA+TGG | 0.480917 | 5_4:-42259554 | Msa0851800:intron |
| AACTCCTCTTGGCTGGCAGC+AGG | 0.481325 | 5_4:-42261367 | Msa0851800:intron |
| TTTGTGTGTAACTGCAGTTA+TGG | 0.482011 | 5_4:-42262211 | Msa0851800:exon |
| ACTAAACCAGTCTAATGAAA+AGG | 0.485573 | 5_4:+42262272 | None:intergenic |
| ACGGCTGTTGGAGTCTTTGG+TGG | 0.485849 | 5_4:-42259685 | Msa0851800:CDS |
| GCTCTACTGCAACGAATGGT+GGG | 0.490909 | 5_4:+42259572 | None:intergenic |
| ACCACTTAAATTCAACCACT+TGG | 0.491707 | 5_4:-42262506 | Msa0851800:five_prime_UTR |
| TGCAATAAATACCTTAACAA+TGG | 0.492075 | 5_4:+42260861 | None:intergenic |
| GTAGCATCACTGGGAAGATC+CGG | 0.492789 | 5_4:+42257938 | None:intergenic |
| AAAAGCATGTGAAGGCTATC+GGG | 0.499129 | 5_4:-42260917 | Msa0851800:CDS |
| AATTCAACTACCAATTATCC+TGG | 0.506226 | 5_4:-42257977 | Msa0851800:CDS |
| CTGGGAAGATCCGGACCATA+AGG | 0.508878 | 5_4:+42257947 | None:intergenic |
| TTTAAAATTCCTTATACGAG+GGG | 0.509932 | 5_4:-42257735 | Msa0851800:three_prime_UTR |
| CGGCTGTTGGAGTCTTTGGT+GGG | 0.510510 | 5_4:-42259684 | Msa0851800:CDS |
| AAACTGACGACGACACTTGG+TGG | 0.512649 | 5_4:-42258993 | Msa0851800:CDS |
| CTCTAGTCAGTAGCATCACT+GGG | 0.516578 | 5_4:+42257929 | None:intergenic |
| TGGCAAAATTCCTTATGGTC+CGG | 0.517787 | 5_4:-42257957 | Msa0851800:CDS |
| TTCTTCTCTTATCACATGGA+TGG | 0.518718 | 5_4:+42259206 | None:intergenic |
| ATAAACATAAGAATATTTCA+AGG | 0.521549 | 5_4:+42262410 | None:intergenic |
| TTGAAACTGACGACGACACT+TGG | 0.522075 | 5_4:-42258996 | Msa0851800:CDS |
| TAATTGTGAACTACGTTCCA+TGG | 0.527066 | 5_4:-42258119 | Msa0851800:CDS |
| ACTACGTTCCATGGTTATTG+TGG | 0.532011 | 5_4:-42258110 | Msa0851800:CDS |
| AGCTCTACTGCAACGAATGG+TGG | 0.533100 | 5_4:+42259571 | None:intergenic |
| CCATAGCAAAACTATTCACC+TGG | 0.545933 | 5_4:-42262154 | Msa0851800:intron |
| TTTATCATACCATTTGCTCT+CGG | 0.546796 | 5_4:+42259545 | None:intergenic |
| CAAACCTAACTCCTCTTGGC+TGG | 0.550658 | 5_4:-42261374 | Msa0851800:CDS |
| AGGACAATGCAAACGGCTGT+TGG | 0.555089 | 5_4:-42259697 | Msa0851800:CDS |
| TATAATGCCATATAATAAAG+TGG | 0.555769 | 5_4:+42257643 | None:intergenic |
| CCATTTATCCACAATAACCA+TGG | 0.562033 | 5_4:+42258102 | None:intergenic |
| TTGTTACTCTCATTGATAGT+CGG | 0.565709 | 5_4:-42257872 | Msa0851800:three_prime_UTR |
| GGCCGAATTTCAGATTACTA+GGG | 0.566341 | 5_4:+42262618 | None:intergenic |
| TGATAGTCGGTCGTATGAAA+CGG | 0.567015 | 5_4:-42257859 | Msa0851800:three_prime_UTR |
| ACACTTGTAAGAATATGAGT+TGG | 0.573924 | 5_4:+42257618 | None:intergenic |
| TTAAAATTCCTTATACGAGG+GGG | 0.579443 | 5_4:-42257734 | Msa0851800:three_prime_UTR |
| GCATTGCAGGACAATGCAAA+CGG | 0.582434 | 5_4:-42259704 | Msa0851800:intron |
| ACTCTTCTTGTGTTGCACAA+TGG | 0.584834 | 5_4:-42262309 | Msa0851800:five_prime_UTR |
| GGTGGGGAAGCAAACACTGA+TGG | 0.588462 | 5_4:-42259667 | Msa0851800:CDS |
| ACAGTTCTTCTCTTATCACA+TGG | 0.591715 | 5_4:+42259202 | None:intergenic |
| CATAAGATAAGTAAGCATCA+TGG | 0.594248 | 5_4:+42261409 | None:intergenic |
| GGCTGTTGGAGTCTTTGGTG+GGG | 0.595312 | 5_4:-42259683 | Msa0851800:CDS |
| GTGTTAAGACTAGAAACTGC+AGG | 0.597363 | 5_4:+42259595 | None:intergenic |
| GTCATTTCCAAAAGCACCAA+GGG | 0.605458 | 5_4:+42258668 | None:intergenic |
| TAAAATTCCTTATACGAGGG+GGG | 0.614032 | 5_4:-42257733 | Msa0851800:three_prime_UTR |
| CTCTACTGCAACGAATGGTG+GGG | 0.616274 | 5_4:+42259573 | None:intergenic |
| TCGGTCGTATGAAACGGTCA+TGG | 0.629371 | 5_4:-42257853 | Msa0851800:three_prime_UTR |
| AAATCTGCAAAAGCATGTGA+AGG | 0.630010 | 5_4:-42260925 | Msa0851800:CDS |
| CAAAGCTCTACTGCAACGAA+TGG | 0.634038 | 5_4:+42259568 | None:intergenic |
| GCAGTTATGGATACTGCACC+TGG | 0.638731 | 5_4:-42262198 | Msa0851800:exon |
| CCTCTGATGATTGAAAATGT+GGG | 0.649662 | 5_4:-42259631 | Msa0851800:CDS |
| GTTGTGTACACGTAAAGAGA+AGG | 0.650810 | 5_4:-42258730 | Msa0851800:CDS |
| ACTACCTGCTGCCAGCCAAG+AGG | 0.650877 | 5_4:+42261363 | None:intergenic |
| AGTTTGAACAACAGGCCAAG+TGG | 0.665774 | 5_4:+42262491 | None:intergenic |
| AGTCATTTCCAAAAGCACCA+AGG | 0.672897 | 5_4:+42258667 | None:intergenic |
| CAATTCCTGGAAACATGTGT+CGG | 0.677056 | 5_4:+42259170 | None:intergenic |
| ATACAGGTTAGGCATGCCCA+AGG | 0.679711 | 5_4:-42261459 | Msa0851800:intron |
| CAATAAATACCTTAACAATG+GGG | 0.699556 | 5_4:+42260863 | None:intergenic |
| AATGGATAGAGACTTTGACC+AGG | 0.719679 | 5_4:+42262180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAGAAAATCATAAA+TGG | + | chr5_4:42258751-42258770 | None:intergenic | 10.0% |
| !!! | TCAATTTTTTTTTATTTTTC+AGG | - | chr5_4:42262478-42262497 | Msa0851800:five_prime_UTR | 10.0% |
| !! | ATAAACATAAGAATATTTCA+AGG | + | chr5_4:42257853-42257872 | None:intergenic | 15.0% |
| !!! | ATTTTTAAAACACTTCTAAT+AGG | + | chr5_4:42258512-42258531 | None:intergenic | 15.0% |
| !!! | CTGATAATAATTTTAAAAAG+TGG | + | chr5_4:42259208-42259227 | None:intergenic | 15.0% |
| !! | ATTCTGATATGATTTAAATT+TGG | + | chr5_4:42259600-42259619 | None:intergenic | 15.0% |
| !!! | AATCAAATCATTTTCATATT+AGG | - | chr5_4:42260183-42260202 | Msa0851800:intron | 15.0% |
| !! | ATGTTTATTACTTTAACATT+TGG | - | chr5_4:42260476-42260495 | Msa0851800:intron | 15.0% |
| !! | TTCTCAAATTTATAAGTTAT+AGG | + | chr5_4:42260840-42260859 | None:intergenic | 15.0% |
| !!! | AAATGACATTTTGTAAAATA+GGG | + | chr5_4:42260980-42260999 | None:intergenic | 15.0% |
| !!! | TTTCTTTTAATTTTTTCTTG+TGG | + | chr5_4:42261890-42261909 | None:intergenic | 15.0% |
| !!! | TACTTTTGAATTCTAAAAAT+AGG | - | chr5_4:42261947-42261966 | Msa0851800:intron | 15.0% |
| !! | AATATTTCAAGGAATCTAAA+TGG | + | chr5_4:42257842-42257861 | None:intergenic | 20.0% |
| !! | GAAATATTCTTATGTTTATG+TGG | - | chr5_4:42257854-42257873 | Msa0851800:three_prime_UTR | 20.0% |
| !! | ATAGGATTATTCTTGAATTT+AGG | - | chr5_4:42257890-42257909 | Msa0851800:three_prime_UTR | 20.0% |
| !!! | TTTATCATACTTTTAATGTG+TGG | - | chr5_4:42258169-42258188 | Msa0851800:intron | 20.0% |
| !! | TAGTTCATATATAAAATCAG+AGG | + | chr5_4:42258218-42258237 | None:intergenic | 20.0% |
| !! | TAATATTTGAACCGTAATAA+AGG | + | chr5_4:42258572-42258591 | None:intergenic | 20.0% |
| !! | TATTACGGTTCAAATATTAT+TGG | - | chr5_4:42258573-42258592 | Msa0851800:intron | 20.0% |
| !! | TGGAAATATTTGAATATAAC+CGG | + | chr5_4:42259188-42259207 | None:intergenic | 20.0% |
| !!! | TTTTTTCAAGTTGTAGTAAT+TGG | + | chr5_4:42259545-42259564 | None:intergenic | 20.0% |
| !!! | TTTAGAATTAACCTCATAAT+AGG | - | chr5_4:42259988-42260007 | Msa0851800:intron | 20.0% |
| !! | CAGTATATTAGAATGAAAAA+AGG | - | chr5_4:42260081-42260100 | Msa0851800:intron | 20.0% |
| !! | AATAAGCTGAAAATAACTTA+CGG | - | chr5_4:42260246-42260265 | Msa0851800:intron | 20.0% |
| !!! | TATTAGTATTGATATTGACA+TGG | - | chr5_4:42260383-42260402 | Msa0851800:intron | 20.0% |
| !! | AAATTTATAAGTTATAGGAG+GGG | + | chr5_4:42260835-42260854 | None:intergenic | 20.0% |
| !! | CAAATTTATAAGTTATAGGA+GGG | + | chr5_4:42260836-42260855 | None:intergenic | 20.0% |
| !! | TCAAATTTATAAGTTATAGG+AGG | + | chr5_4:42260837-42260856 | None:intergenic | 20.0% |
| !!! | CAAATGACATTTTGTAAAAT+AGG | + | chr5_4:42260981-42261000 | None:intergenic | 20.0% |
| !!! | ATCTCCAATATTTTTCATAA+GGG | + | chr5_4:42261773-42261792 | None:intergenic | 20.0% |
| !!! | GGAATTTGAATTCTAAAAAT+AGG | - | chr5_4:42261968-42261987 | Msa0851800:intron | 20.0% |
| !!! | TTTTTCAGGAAAAATTATGT+CGG | - | chr5_4:42262492-42262511 | Msa0851800:five_prime_UTR | 20.0% |
| !!! | ATTTTAAAATTCCTTATACG+AGG | - | chr5_4:42262523-42262542 | Msa0851800:intron | 20.0% |
| !!! | TTTTAAAATTCCTTATACGA+GGG | - | chr5_4:42262524-42262543 | Msa0851800:intron | 20.0% |
| !! | TTTCTTTCCACTTTATTATA+TGG | - | chr5_4:42262610-42262629 | Msa0851800:five_prime_UTR | 20.0% |
| !! | TATAATGCCATATAATAAAG+TGG | + | chr5_4:42262620-42262639 | None:intergenic | 20.0% |
| ! | TGACAAAACTATTTATCTCT+TGG | + | chr5_4:42257666-42257685 | None:intergenic | 25.0% |
| !! | TTTTAGTCAATGATCAAACT+CGG | - | chr5_4:42257693-42257712 | Msa0851800:three_prime_UTR | 25.0% |
| ! | TTAAGGTCAAATTAATTGGT+AGG | + | chr5_4:42257721-42257740 | None:intergenic | 25.0% |
| ! | TCAGTTAAGGTCAAATTAAT+TGG | + | chr5_4:42257725-42257744 | None:intergenic | 25.0% |
| ! | TGTGGTAAAAAAATTCAGAT+AGG | - | chr5_4:42257872-42257891 | Msa0851800:three_prime_UTR | 25.0% |
| !!! | TTTTTTCCTTTTCATTAGAC+TGG | - | chr5_4:42257982-42258001 | Msa0851800:CDS | 25.0% |
| ! | TCTATATGATCAAAGAGATT+AGG | - | chr5_4:42258283-42258302 | Msa0851800:intron | 25.0% |
| ! | AAATTTCGCGAAATAATTCT+AGG | - | chr5_4:42258333-42258352 | Msa0851800:intron | 25.0% |
| ! | AATTTCGCGAAATAATTCTA+GGG | - | chr5_4:42258334-42258353 | Msa0851800:intron | 25.0% |
| !! | TGGTTTTTGATAGAACATTA+TGG | + | chr5_4:42258455-42258474 | None:intergenic | 25.0% |
| ! | TTAAAACACTTCTAATAGGA+AGG | + | chr5_4:42258508-42258527 | None:intergenic | 25.0% |
| !! | TATTTTATGACCTTGTATAC+AGG | - | chr5_4:42258785-42258804 | Msa0851800:intron | 25.0% |
| ! | CTACATGACATTCAAAAAAT+TGG | + | chr5_4:42258930-42258949 | None:intergenic | 25.0% |
| !! | TGAATGGTTTTTGTATTATG+CGG | - | chr5_4:42258961-42258980 | Msa0851800:CDS | 25.0% |
| ! | TTTCATGAGAAATCAGATTA+AGG | + | chr5_4:42259072-42259091 | None:intergenic | 25.0% |
| ! | TTTATGTTCTTTAGATGTCA+TGG | - | chr5_4:42259275-42259294 | Msa0851800:intron | 25.0% |
| !!! | CACAACTAGTTCAATTTTTT+TGG | + | chr5_4:42259373-42259392 | None:intergenic | 25.0% |
| ! | CAAAAAAATTGAACTAGTTG+TGG | - | chr5_4:42259371-42259390 | Msa0851800:intron | 25.0% |
| ! | CAATAAATACCTTAACAATG+GGG | + | chr5_4:42259400-42259419 | None:intergenic | 25.0% |
| ! | GCAATAAATACCTTAACAAT+GGG | + | chr5_4:42259401-42259420 | None:intergenic | 25.0% |
| ! | TGCAATAAATACCTTAACAA+TGG | + | chr5_4:42259402-42259421 | None:intergenic | 25.0% |
| ! | TATTATTGTGATGAGATACA+AGG | - | chr5_4:42259481-42259500 | Msa0851800:intron | 25.0% |
| ! | GATACAAGGATTGAATATAA+AGG | - | chr5_4:42259495-42259514 | Msa0851800:intron | 25.0% |
| ! | ATTGAATATAAAGGTAGAGT+TGG | - | chr5_4:42259504-42259523 | Msa0851800:intron | 25.0% |
| ! | GAAAGTTTAGAAAGTTTCTT+AGG | + | chr5_4:42259678-42259697 | None:intergenic | 25.0% |
| ! | ATTAGTGATTATGACTTAAG+TGG | - | chr5_4:42260122-42260141 | Msa0851800:intron | 25.0% |
| ! | TGACTTAAGTGGTTATATAT+AGG | - | chr5_4:42260133-42260152 | Msa0851800:intron | 25.0% |
| ! | AAATGATTCTTACCACTAAA+AGG | + | chr5_4:42260416-42260435 | None:intergenic | 25.0% |
| ! | ATAACTAATACTCCTCAATA+TGG | + | chr5_4:42260444-42260463 | None:intergenic | 25.0% |
| !!! | AATAAAAGTGCTTCTGTATT+TGG | - | chr5_4:42260505-42260524 | Msa0851800:intron | 25.0% |
| !!! | ATAAAAGTGCTTCTGTATTT+GGG | - | chr5_4:42260506-42260525 | Msa0851800:intron | 25.0% |
| !! | TGAATCAACTAGTTTACATT+TGG | - | chr5_4:42260753-42260772 | Msa0851800:intron | 25.0% |
| ! | GAGAAAACAAATTGATTGAA+TGG | - | chr5_4:42260855-42260874 | Msa0851800:intron | 25.0% |
| ! | AATCAGAATACTTATGTACA+AGG | - | chr5_4:42261008-42261027 | Msa0851800:intron | 25.0% |
| ! | CACTATAATTCTCTTAAGTT+CGG | - | chr5_4:42261379-42261398 | Msa0851800:CDS | 25.0% |
| !! | CTCAAATTTGTTTATTCGTT+TGG | - | chr5_4:42261502-42261521 | Msa0851800:intron | 25.0% |
| ! | TGTGAGAATGATAAATAACA+AGG | - | chr5_4:42261715-42261734 | Msa0851800:intron | 25.0% |
| ! | TCAACCCTTATGAAAAATAT+TGG | - | chr5_4:42261766-42261785 | Msa0851800:intron | 25.0% |
| !! | CATCTCCAATATTTTTCATA+AGG | + | chr5_4:42261774-42261793 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr5_4:42261842-42261861 | Msa0851800:intron | 25.0% |
| !!! | CTTTTAATTTTTTCTTGTGG+TGG | + | chr5_4:42261887-42261906 | None:intergenic | 25.0% |
| ! | ATAGGAAAATTCTTACTCAA+CGG | - | chr5_4:42261986-42262005 | Msa0851800:intron | 25.0% |
| !! | ATGAAAGTGTAACATATGTA+GGG | + | chr5_4:42262076-42262095 | None:intergenic | 25.0% |
| !! | AATGAAAGTGTAACATATGT+AGG | + | chr5_4:42262077-42262096 | None:intergenic | 25.0% |
| ! | TACATATGTTACACTTTCAT+TGG | - | chr5_4:42262076-42262095 | Msa0851800:intron | 25.0% |
| ! | ACTAGAGAAACATTAATTCA+AGG | - | chr5_4:42262347-42262366 | Msa0851800:five_prime_UTR | 25.0% |
| ! | AGAAACATTAATTCAAGGAA+TGG | - | chr5_4:42262352-42262371 | Msa0851800:five_prime_UTR | 25.0% |
| ! | GAAACATTAATTCAAGGAAT+GGG | - | chr5_4:42262353-42262372 | Msa0851800:five_prime_UTR | 25.0% |
| !! | TTTAAAATTCCTTATACGAG+GGG | - | chr5_4:42262525-42262544 | Msa0851800:intron | 25.0% |
| ! | AATAAATTGGCAACATATGT+AGG | - | chr5_4:42262558-42262577 | Msa0851800:intron | 25.0% |
| !!! | CAAATTTTGAGATGAAAAGA+TGG | - | chr5_4:42262584-42262603 | Msa0851800:five_prime_UTR | 25.0% |
| ! | TTTTTAACCATATGGTTCAC+AGG | - | chr5_4:42257610-42257629 | Msa0851800:three_prime_UTR | 30.0% |
| ! | TTTTAACCATATGGTTCACA+GGG | - | chr5_4:42257611-42257630 | Msa0851800:three_prime_UTR | 30.0% |
| ! | AACCCTAGTAATCTGAAATT+CGG | - | chr5_4:42257640-42257659 | Msa0851800:three_prime_UTR | 30.0% |
| TGGTTAATGAACTTCAGTTA+AGG | + | chr5_4:42257738-42257757 | None:intergenic | 30.0% | |
| ACTAAACCAGTCTAATGAAA+AGG | + | chr5_4:42257991-42258010 | None:intergenic | 30.0% | |
| ATATAAATTTGCCACAAACC+AGG | + | chr5_4:42258127-42258146 | None:intergenic | 30.0% | |
| CAGCATGAAATTCAGTTATA+AGG | - | chr5_4:42258307-42258326 | Msa0851800:intron | 30.0% | |
| ! | AAATGACTTGGAGAAAAACA+TGG | + | chr5_4:42258475-42258494 | None:intergenic | 30.0% |
| CTTCCTTAAAGCTCTTAAAT+CGG | + | chr5_4:42258620-42258639 | None:intergenic | 30.0% | |
| GTGTTGAAGTAGTTATATTC+TGG | - | chr5_4:42258716-42258735 | Msa0851800:CDS | 30.0% | |
| TTCTACATTATGAACTCCTT+GGG | + | chr5_4:42258820-42258839 | None:intergenic | 30.0% | |
| CATAAGATAAGTAAGCATCA+TGG | + | chr5_4:42258854-42258873 | None:intergenic | 30.0% | |
| GATGATATTGTTGTACAGAT+TGG | - | chr5_4:42259015-42259034 | Msa0851800:intron | 30.0% | |
| !!! | AGTATTTTAGTATTCTGTCC+TGG | - | chr5_4:42259042-42259061 | Msa0851800:intron | 30.0% |
| AAATCAGATTAAGGAATACC+AGG | + | chr5_4:42259063-42259082 | None:intergenic | 30.0% | |
| AGTGAGACATATACATGATT+TGG | + | chr5_4:42259439-42259458 | None:intergenic | 30.0% | |
| TAGTTAACATTTCCCTTTGA+AGG | - | chr5_4:42259742-42259761 | Msa0851800:intron | 30.0% | |
| AGTTAACATTTCCCTTTGAA+GGG | - | chr5_4:42259743-42259762 | Msa0851800:intron | 30.0% | |
| AGTTTAATCTTCCCTTCAAA+GGG | + | chr5_4:42259757-42259776 | None:intergenic | 30.0% | |
| !! | TTAATTCTAAAGTCAGCATC+GGG | + | chr5_4:42259979-42259998 | None:intergenic | 30.0% |
| !! | GTTAATTCTAAAGTCAGCAT+CGG | + | chr5_4:42259980-42259999 | None:intergenic | 30.0% |
| !! | TACTACAACTTAGCTCTTTT+GGG | + | chr5_4:42260014-42260033 | None:intergenic | 30.0% |
| !! | ATACTACAACTTAGCTCTTT+TGG | + | chr5_4:42260015-42260034 | None:intergenic | 30.0% |
| TAGTATGTAGAGATACTCTA+TGG | - | chr5_4:42260029-42260048 | Msa0851800:intron | 30.0% | |
| !! | CTTATTTCTACAAGTTCTCT+AGG | + | chr5_4:42260232-42260251 | None:intergenic | 30.0% |
| ! | ATCAACTGTATGACTAGTTA+GGG | + | chr5_4:42260299-42260318 | None:intergenic | 30.0% |
| ! | AATCAACTGTATGACTAGTT+AGG | + | chr5_4:42260300-42260319 | None:intergenic | 30.0% |
| ! | AGTTGATTCTAAAAACCAAC+TGG | - | chr5_4:42260312-42260331 | Msa0851800:intron | 30.0% |
| !! | TAAAAGTGCTTCTGTATTTG+GGG | - | chr5_4:42260507-42260526 | Msa0851800:intron | 30.0% |
| AATTCAAACTAATGCATTGC+AGG | - | chr5_4:42260543-42260562 | Msa0851800:intron | 30.0% | |
| TTTATCATACCATTTGCTCT+CGG | + | chr5_4:42260718-42260737 | None:intergenic | 30.0% | |
| TTGAAGATGTACTAGTAGAT+AGG | + | chr5_4:42260792-42260811 | None:intergenic | 30.0% | |
| TTTGTAAAATAGGGAGGTAA+AGG | + | chr5_4:42260971-42260990 | None:intergenic | 30.0% | |
| ! | TGACATTTTGTAAAATAGGG+AGG | + | chr5_4:42260977-42260996 | None:intergenic | 30.0% |
| !! | TCCAGGAATTGATTTTTCAT+TGG | - | chr5_4:42261102-42261121 | Msa0851800:intron | 30.0% |
| ACCAATGAAAAATCAATTCC+TGG | + | chr5_4:42261106-42261125 | None:intergenic | 30.0% | |
| ! | TTTGTTTATTCGTTTGGTTC+AGG | - | chr5_4:42261508-42261527 | Msa0851800:intron | 30.0% |
| ! | AGTTTTCTGTTTAATACCCT+TGG | - | chr5_4:42261576-42261595 | Msa0851800:intron | 30.0% |
| CACATTTCAGTCTTAGTATT+TGG | + | chr5_4:42261624-42261643 | None:intergenic | 30.0% | |
| ACAAGATTTGTCAAACTTTC+AGG | + | chr5_4:42261665-42261684 | None:intergenic | 30.0% | |
| CATAATATATGTAAGGTCCA+GGG | - | chr5_4:42261849-42261868 | Msa0851800:intron | 30.0% | |
| !!! | TAATTTTTTCTTGTGGTGGA+CGG | + | chr5_4:42261883-42261902 | None:intergenic | 30.0% |
| TAGATCAAACAAAGAAGTCA+AGG | + | chr5_4:42261929-42261948 | None:intergenic | 30.0% | |
| GTATACATTTGCAGTATGAT+TGG | - | chr5_4:42262253-42262272 | Msa0851800:five_prime_UTR | 30.0% | |
| AATTCAACTACCAATTATCC+TGG | - | chr5_4:42262283-42262302 | Msa0851800:five_prime_UTR | 30.0% | |
| CAATGAGAGTAACAATTGTT+TGG | + | chr5_4:42262383-42262402 | None:intergenic | 30.0% | |
| ! | TTGTTACTCTCATTGATAGT+CGG | - | chr5_4:42262388-42262407 | Msa0851800:five_prime_UTR | 30.0% |
| TTAAAATTCCTTATACGAGG+GGG | - | chr5_4:42262526-42262545 | Msa0851800:intron | 30.0% | |
| ! | GGGGGTATAAGAAAATAAAT+TGG | - | chr5_4:42262545-42262564 | Msa0851800:intron | 30.0% |
| ACACTTGTAAGAATATGAGT+TGG | + | chr5_4:42262645-42262664 | None:intergenic | 30.0% | |
| ACCACTTAAATTCAACCACT+TGG | - | chr5_4:42257754-42257773 | Msa0851800:three_prime_UTR | 35.0% | |
| CATGAAGAAGTTTGAACAAC+AGG | + | chr5_4:42257780-42257799 | None:intergenic | 35.0% | |
| AAACTTCTTCATGCTTGCTT+TGG | - | chr5_4:42257787-42257806 | Msa0851800:three_prime_UTR | 35.0% | |
| TTTGTGTGTAACTGCAGTTA+TGG | - | chr5_4:42258049-42258068 | Msa0851800:intron | 35.0% | |
| !! | ATAGTTTTGCTATGGTGCAA+TGG | + | chr5_4:42258101-42258120 | None:intergenic | 35.0% |
| ! | AAAACTATTCACCTGGTTTG+TGG | - | chr5_4:42258113-42258132 | Msa0851800:CDS | 35.0% |
| GGATCTAGAGATAAATGACT+TGG | + | chr5_4:42258487-42258506 | None:intergenic | 35.0% | |
| ATTTGAACCGTAATAAAGGC+CGG | + | chr5_4:42258568-42258587 | None:intergenic | 35.0% | |
| GTTCCGATTTAAGAGCTTTA+AGG | - | chr5_4:42258614-42258633 | Msa0851800:intron | 35.0% | |
| AAATCAGACATTGAACTTGC+GGG | + | chr5_4:42258663-42258682 | None:intergenic | 35.0% | |
| CAAATCAGACATTGAACTTG+CGG | + | chr5_4:42258664-42258683 | None:intergenic | 35.0% | |
| TATGACCTTGTATACAGGTT+AGG | - | chr5_4:42258790-42258809 | Msa0851800:intron | 35.0% | |
| CTTCTACATTATGAACTCCT+TGG | + | chr5_4:42258821-42258840 | None:intergenic | 35.0% | |
| CAAGGAGTTCATAATGTAGA+AGG | - | chr5_4:42258819-42258838 | Msa0851800:intron | 35.0% | |
| TGTAGTCAAGTATGTCTGAA+TGG | - | chr5_4:42258945-42258964 | Msa0851800:CDS | 35.0% | |
| !! | GTAGCACTGACATTTCATAT+TGG | - | chr5_4:42259154-42259173 | Msa0851800:intron | 35.0% |
| ! | AAATCTGCAAAAGCATGTGA+AGG | - | chr5_4:42259335-42259354 | Msa0851800:intron | 35.0% |
| GAGTTTAATCTTCCCTTCAA+AGG | + | chr5_4:42259758-42259777 | None:intergenic | 35.0% | |
| ATATTAGACGATAGAGTGTG+AGG | + | chr5_4:42259831-42259850 | None:intergenic | 35.0% | |
| TGACTTCAAGAATAGAACTC+AGG | + | chr5_4:42259914-42259933 | None:intergenic | 35.0% | |
| TAGAATGAAAAAAGGTCGTG+TGG | - | chr5_4:42260089-42260108 | Msa0851800:intron | 35.0% | |
| !! | TACTCGATGTTATTTCCAGT+TGG | + | chr5_4:42260330-42260349 | None:intergenic | 35.0% |
| TAACCCACGTATTATACACA+CGG | + | chr5_4:42260358-42260377 | None:intergenic | 35.0% | |
| ! | CATGGAATTTGACCTTTTAG+TGG | - | chr5_4:42260401-42260420 | Msa0851800:intron | 35.0% |
| ATCATTTGCACTCCATATTG+AGG | - | chr5_4:42260429-42260448 | Msa0851800:intron | 35.0% | |
| TCCTCTGATGATTGAAAATG+TGG | - | chr5_4:42260628-42260647 | Msa0851800:intron | 35.0% | |
| CCTCTGATGATTGAAAATGT+GGG | - | chr5_4:42260629-42260648 | Msa0851800:intron | 35.0% | |
| ! | AAGGCTTTCTTTTGTAATCC+AGG | - | chr5_4:42261027-42261046 | Msa0851800:intron | 35.0% |
| ! | AGGCTTTCTTTTGTAATCCA+GGG | - | chr5_4:42261028-42261047 | Msa0851800:intron | 35.0% |
| TTCTTCTCTTATCACATGGA+TGG | + | chr5_4:42261057-42261076 | None:intergenic | 35.0% | |
| ACAGTTCTTCTCTTATCACA+TGG | + | chr5_4:42261061-42261080 | None:intergenic | 35.0% | |
| TCTTTCATACCTCCATGATA+TGG | - | chr5_4:42261141-42261160 | Msa0851800:intron | 35.0% | |
| AATGCAGATAGACCATATCA+TGG | + | chr5_4:42261156-42261175 | None:intergenic | 35.0% | |
| TCTTCTTTCTTCTCTCTTTC+AGG | + | chr5_4:42261296-42261315 | None:intergenic | 35.0% | |
| GAGAAGAAAGAAGAAGTTAC+TGG | - | chr5_4:42261302-42261321 | Msa0851800:intron | 35.0% | |
| AAAGAAGAAGTTACTGGTAG+AGG | - | chr5_4:42261308-42261327 | Msa0851800:intron | 35.0% | |
| !!! | TTTAATACCCTTGGTGCTTT+TGG | - | chr5_4:42261585-42261604 | Msa0851800:intron | 35.0% |
| GCATAATATATGTAAGGTCC+AGG | - | chr5_4:42261848-42261867 | Msa0851800:intron | 35.0% | |
| !!! | AATTTTTTCTTGTGGTGGAC+GGG | + | chr5_4:42261882-42261901 | None:intergenic | 35.0% |
| TAATTGTGAACTACGTTCCA+TGG | - | chr5_4:42262141-42262160 | Msa0851800:intron | 35.0% | |
| CCATTTATCCACAATAACCA+TGG | + | chr5_4:42262161-42262180 | None:intergenic | 35.0% | |
| CCATGGTTATTGTGGATAAA+TGG | - | chr5_4:42262158-42262177 | Msa0851800:CDS | 35.0% | |
| ! | AGGAATTTTGCCAGGATAAT+TGG | + | chr5_4:42262296-42262315 | None:intergenic | 35.0% |
| TATCCTGGCAAAATTCCTTA+TGG | - | chr5_4:42262298-42262317 | Msa0851800:five_prime_UTR | 35.0% | |
| TAAAATTCCTTATACGAGGG+GGG | - | chr5_4:42262527-42262546 | Msa0851800:intron | 35.0% | |
| GGCCGAATTTCAGATTACTA+GGG | + | chr5_4:42257645-42257664 | None:intergenic | 40.0% | |
| TGGCCGAATTTCAGATTACT+AGG | + | chr5_4:42257646-42257665 | None:intergenic | 40.0% | |
| GCCAAGTGGTTGAATTTAAG+TGG | + | chr5_4:42257758-42257777 | None:intergenic | 40.0% | |
| ACTCTTCTTGTGTTGCACAA+TGG | - | chr5_4:42257951-42257970 | Msa0851800:CDS | 40.0% | |
| AATGGATAGAGACTTTGACC+AGG | + | chr5_4:42258083-42258102 | None:intergenic | 40.0% | |
| !! | CCAGGTGAATAGTTTTGCTA+TGG | + | chr5_4:42258109-42258128 | None:intergenic | 40.0% |
| CCATAGCAAAACTATTCACC+TGG | - | chr5_4:42258106-42258125 | Msa0851800:CDS | 40.0% | |
| ATCAGAGGTGAGTAAGACTT+TGG | + | chr5_4:42258203-42258222 | None:intergenic | 40.0% | |
| CTTATCCTACTAAGTGGAGT+CGG | - | chr5_4:42258410-42258429 | Msa0851800:intron | 40.0% | |
| GGAACAAAGCTGCAATTGTA+CGG | + | chr5_4:42258599-42258618 | None:intergenic | 40.0% | |
| CGCAAGTTCAATGTCTGATT+TGG | - | chr5_4:42258662-42258681 | Msa0851800:CDS | 40.0% | |
| TCATTGTGATCACTTCAGAG+AGG | + | chr5_4:42258991-42259010 | None:intergenic | 40.0% | |
| ! | GCACTGACATTTCATATTGG+AGG | - | chr5_4:42259157-42259176 | Msa0851800:intron | 40.0% |
| TTTCATATTGGAGGTCTGTC+CGG | - | chr5_4:42259166-42259185 | Msa0851800:CDS | 40.0% | |
| !! | ACACTTTGAGGCTCTATAAC+AGG | - | chr5_4:42259308-42259327 | Msa0851800:intron | 40.0% |
| ! | CAAAAGCATGTGAAGGCTAT+CGG | - | chr5_4:42259342-42259361 | Msa0851800:intron | 40.0% |
| ! | AAAAGCATGTGAAGGCTATC+GGG | - | chr5_4:42259343-42259362 | Msa0851800:intron | 40.0% |
| TTGTGGTTTCCCCATTGTTA+AGG | - | chr5_4:42259388-42259407 | Msa0851800:intron | 40.0% | |
| CTCAGAACTGTCAAAATTGC+AGG | + | chr5_4:42259780-42259799 | None:intergenic | 40.0% | |
| ATTCTTGAAGTCACCCTGTT+AGG | - | chr5_4:42259921-42259940 | Msa0851800:intron | 40.0% | |
| ! | AGTTAAGTTGCCTCCTAACA+GGG | + | chr5_4:42259937-42259956 | None:intergenic | 40.0% |
| CTACCGTGTGTATAATACGT+GGG | - | chr5_4:42260352-42260371 | Msa0851800:intron | 40.0% | |
| ! | CCCACATTTTCAATCATCAG+AGG | + | chr5_4:42260632-42260651 | None:intergenic | 40.0% |
| GTGTTAAGACTAGAAACTGC+AGG | + | chr5_4:42260668-42260687 | None:intergenic | 40.0% | |
| ! | GATGTGTCGATATCAAACAC+TGG | - | chr5_4:42260879-42260898 | Msa0851800:CDS | 40.0% |
| AACGAAAAACCTTCGATCAG+AGG | - | chr5_4:42260916-42260935 | Msa0851800:CDS | 40.0% | |
| CAATTCCTGGAAACATGTGT+CGG | + | chr5_4:42261093-42261112 | None:intergenic | 40.0% | |
| ! | TGGTAGAGGACTCAAGTTTT+TGG | - | chr5_4:42261322-42261341 | Msa0851800:intron | 40.0% |
| !! | GAGGACTCAAGTTTTTGGAA+TGG | - | chr5_4:42261327-42261346 | Msa0851800:intron | 40.0% |
| GTTGTGTACACGTAAAGAGA+AGG | - | chr5_4:42261530-42261549 | Msa0851800:intron | 40.0% | |
| !! | GTCATTTCCAAAAGCACCAA+GGG | + | chr5_4:42261595-42261614 | None:intergenic | 40.0% |
| !! | AGTCATTTCCAAAAGCACCA+AGG | + | chr5_4:42261596-42261615 | None:intergenic | 40.0% |
| ACTACGTTCCATGGTTATTG+TGG | - | chr5_4:42262150-42262169 | Msa0851800:intron | 40.0% | |
| TGGCAAAATTCCTTATGGTC+CGG | - | chr5_4:42262303-42262322 | Msa0851800:five_prime_UTR | 40.0% | |
| TGATAGTCGGTCGTATGAAA+CGG | - | chr5_4:42262401-42262420 | Msa0851800:five_prime_UTR | 40.0% | |
| ! | CGTTTTCCCTGTGAACCATA+TGG | + | chr5_4:42257620-42257639 | None:intergenic | 45.0% |
| AGTTTGAACAACAGGCCAAG+TGG | + | chr5_4:42257772-42257791 | None:intergenic | 45.0% | |
| CCACTTAGTAGGATAAGGCT+TGG | + | chr5_4:42258407-42258426 | None:intergenic | 45.0% | |
| ! | CCAAGCCTTATCCTACTAAG+TGG | - | chr5_4:42258404-42258423 | Msa0851800:intron | 45.0% |
| CGACTCCACTTAGTAGGATA+AGG | + | chr5_4:42258412-42258431 | None:intergenic | 45.0% | |
| CAACCAGATGAACCTTGAAC+CGG | - | chr5_4:42258546-42258565 | Msa0851800:intron | 45.0% | |
| CCTTGAACCGGCCTTTATTA+CGG | - | chr5_4:42258558-42258577 | Msa0851800:intron | 45.0% | |
| GCATGCCTAACCTGTATACA+AGG | + | chr5_4:42258798-42258817 | None:intergenic | 45.0% | |
| GATGCAAACCTAACTCCTCT+TGG | - | chr5_4:42258882-42258901 | Msa0851800:intron | 45.0% | |
| ATGTCAGTGCTACATTGAGC+AGG | + | chr5_4:42259147-42259166 | None:intergenic | 45.0% | |
| GGTGAAACGCTTACACTTTG+AGG | - | chr5_4:42259296-42259315 | Msa0851800:intron | 45.0% | |
| CGATAGAGTGTGAGGAATCA+TGG | + | chr5_4:42259823-42259842 | None:intergenic | 45.0% | |
| TTACCAACTCTCTCAACACG+TGG | + | chr5_4:42259867-42259886 | None:intergenic | 45.0% | |
| ! | CAGTTAAGTTGCCTCCTAAC+AGG | + | chr5_4:42259938-42259957 | None:intergenic | 45.0% |
| !!! | CATCGGGACGTTCAGTTTTT+TGG | + | chr5_4:42259963-42259982 | None:intergenic | 45.0% |
| ! | GCTCTTTTGGGCCTATTATG+AGG | + | chr5_4:42260002-42260021 | None:intergenic | 45.0% |
| AAAAAAGGTCGTGTGGCACA+AGG | - | chr5_4:42260096-42260115 | Msa0851800:intron | 45.0% | |
| CCACGTATTATACACACGGT+AGG | + | chr5_4:42260354-42260373 | None:intergenic | 45.0% | |
| CCTACCGTGTGTATAATACG+TGG | - | chr5_4:42260351-42260370 | Msa0851800:intron | 45.0% | |
| GCATTGCAGGACAATGCAAA+CGG | - | chr5_4:42260556-42260575 | Msa0851800:intron | 45.0% | |
| CAAAGCTCTACTGCAACGAA+TGG | + | chr5_4:42260695-42260714 | None:intergenic | 45.0% | |
| AAACCTTCGATCAGAGGAGT+CGG | - | chr5_4:42260922-42260941 | Msa0851800:CDS | 45.0% | |
| GCAGATAGACCATATCATGG+AGG | + | chr5_4:42261153-42261172 | None:intergenic | 45.0% | |
| TTGAAACTGACGACGACACT+TGG | - | chr5_4:42261264-42261283 | Msa0851800:intron | 45.0% | |
| TACCAACTGAGCTAAGCTCA+CGG | + | chr5_4:42261820-42261839 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr5_4:42261820-42261839 | Msa0851800:intron | 45.0% |
| ! | GGACCATAAGGAATTTTGCC+AGG | + | chr5_4:42262304-42262323 | None:intergenic | 45.0% |
| CTCTAGTCAGTAGCATCACT+GGG | + | chr5_4:42262334-42262353 | None:intergenic | 45.0% | |
| TCTCTAGTCAGTAGCATCAC+TGG | + | chr5_4:42262335-42262354 | None:intergenic | 45.0% | |
| TCTTATACCCCCCTCGTATA+AGG | + | chr5_4:42262537-42262556 | None:intergenic | 45.0% | |
| GCAGTTATGGATACTGCACC+TGG | - | chr5_4:42258062-42258081 | Msa0851800:intron | 50.0% | |
| ! | TGTAGCCGACTCCACTTAGT+AGG | + | chr5_4:42258418-42258437 | None:intergenic | 50.0% |
| ! | CCGTAATAAAGGCCGGTTCA+AGG | + | chr5_4:42258561-42258580 | None:intergenic | 50.0% |
| ATTGAACTTGCGGGAGCTCT+AGG | + | chr5_4:42258654-42258673 | None:intergenic | 50.0% | |
| ATACAGGTTAGGCATGCCCA+AGG | - | chr5_4:42258801-42258820 | Msa0851800:intron | 50.0% | |
| CAAACCTAACTCCTCTTGGC+TGG | - | chr5_4:42258886-42258905 | Msa0851800:intron | 50.0% | |
| TGTCAGACTCAAGTCTGCGT+CGG | - | chr5_4:42259236-42259255 | Msa0851800:intron | 50.0% | |
| CAACTCTCTCAACACGTGGA+AGG | + | chr5_4:42259863-42259882 | None:intergenic | 50.0% | |
| CTTCCACGTGTTGAGAGAGT+TGG | - | chr5_4:42259861-42259880 | Msa0851800:intron | 50.0% | |
| CTTGAAGTCACCCTGTTAGG+AGG | - | chr5_4:42259924-42259943 | Msa0851800:intron | 50.0% | |
| AGGACAATGCAAACGGCTGT+TGG | - | chr5_4:42260563-42260582 | Msa0851800:intron | 50.0% | |
| CAAACGGCTGTTGGAGTCTT+TGG | - | chr5_4:42260572-42260591 | Msa0851800:intron | 50.0% | |
| CTCTACTGCAACGAATGGTG+GGG | + | chr5_4:42260690-42260709 | None:intergenic | 50.0% | |
| GCTCTACTGCAACGAATGGT+GGG | + | chr5_4:42260691-42260710 | None:intergenic | 50.0% | |
| AGCTCTACTGCAACGAATGG+TGG | + | chr5_4:42260692-42260711 | None:intergenic | 50.0% | |
| AGAGCTTTGCCGAGAGCAAA+TGG | - | chr5_4:42260706-42260725 | Msa0851800:intron | 50.0% | |
| TATCACATGGATGGAGTCCC+TGG | + | chr5_4:42261048-42261067 | None:intergenic | 50.0% | |
| !! | GAGTACCGACACATGTTTCC+AGG | - | chr5_4:42261085-42261104 | Msa0851800:intron | 50.0% |
| AAACTGACGACGACACTTGG+TGG | - | chr5_4:42261267-42261286 | Msa0851800:intron | 50.0% | |
| ACCAACTGAGCTAAGCTCAC+GGG | + | chr5_4:42261819-42261838 | None:intergenic | 50.0% | |
| GTAGCATCACTGGGAAGATC+CGG | + | chr5_4:42262325-42262344 | None:intergenic | 50.0% | |
| TCGGTCGTATGAAACGGTCA+TGG | - | chr5_4:42262407-42262426 | Msa0851800:five_prime_UTR | 50.0% | |
| ! | AGGCCGGTTCAAGGTTCATC+TGG | + | chr5_4:42258552-42258571 | None:intergenic | 55.0% |
| CTCTCTCAACACGTGGAAGG+TGG | + | chr5_4:42259860-42259879 | None:intergenic | 55.0% | |
| ACGGCTGTTGGAGTCTTTGG+TGG | - | chr5_4:42260575-42260594 | Msa0851800:intron | 55.0% | |
| CGGCTGTTGGAGTCTTTGGT+GGG | - | chr5_4:42260576-42260595 | Msa0851800:intron | 55.0% | |
| GGCTGTTGGAGTCTTTGGTG+GGG | - | chr5_4:42260577-42260596 | Msa0851800:intron | 55.0% | |
| GGTGGGGAAGCAAACACTGA+TGG | - | chr5_4:42260593-42260612 | Msa0851800:intron | 55.0% | |
| !! | CTACCGACTCCTCTGATCGA+AGG | + | chr5_4:42260928-42260947 | None:intergenic | 55.0% |
| TCCCGTGAGCTTAGCTCAGT+TGG | - | chr5_4:42261815-42261834 | Msa0851800:intron | 55.0% | |
| CTGGGAAGATCCGGACCATA+AGG | + | chr5_4:42262316-42262335 | None:intergenic | 55.0% | |
| !! | CTTGCGGGAGCTCTAGGTCA+TGG | + | chr5_4:42258648-42258667 | None:intergenic | 60.0% |
| GCTGCCAGCCAAGAGGAGTT+AGG | + | chr5_4:42258893-42258912 | None:intergenic | 60.0% | |
| AACTCCTCTTGGCTGGCAGC+AGG | - | chr5_4:42258893-42258912 | Msa0851800:intron | 60.0% | |
| ACTACCTGCTGCCAGCCAAG+AGG | + | chr5_4:42258900-42258919 | None:intergenic | 60.0% | |
| GGTGGACGGGATTCGAACCC+TGG | + | chr5_4:42261869-42261888 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 42257606 | 42262676 | 42257606 | ID=Msa0851800;Name=Msa0851800 |
| chr5_4 | mRNA | 42257606 | 42262676 | 42257606 | ID=Msa0851800-mRNA-1;Parent=Msa0851800;Name=Msa0851800-mRNA-1;_AED=0.21;_eAED=0.21;_QI=440|1|1|1|0.88|0.8|10|325|273 |
| chr5_4 | exon | 42257606 | 42258015 | 42257606 | ID=Msa0851800-mRNA-1:exon:13428;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42258103 | 42258147 | 42258103 | ID=Msa0851800-mRNA-1:exon:13427;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42258633 | 42258752 | 42258633 | ID=Msa0851800-mRNA-1:exon:13426;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42258934 | 42259019 | 42258934 | ID=Msa0851800-mRNA-1:exon:13425;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42259159 | 42259233 | 42259159 | ID=Msa0851800-mRNA-1:exon:13424;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42259555 | 42259717 | 42259555 | ID=Msa0851800-mRNA-1:exon:13423;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42260873 | 42260952 | 42260873 | ID=Msa0851800-mRNA-1:exon:13422;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42261368 | 42261475 | 42261368 | ID=Msa0851800-mRNA-1:exon:13421;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42262155 | 42262538 | 42262155 | ID=Msa0851800-mRNA-1:exon:13420;Parent=Msa0851800-mRNA-1 |
| chr5_4 | exon | 42262561 | 42262676 | 42262561 | ID=Msa0851800-mRNA-1:exon:13419;Parent=Msa0851800-mRNA-1 |
| chr5_4 | five_prime_UTR | 42262561 | 42262676 | 42262561 | ID=Msa0851800-mRNA-1:five_prime_utr;Parent=Msa0851800-mRNA-1 |
| chr5_4 | five_prime_UTR | 42262215 | 42262538 | 42262215 | ID=Msa0851800-mRNA-1:five_prime_utr;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42262155 | 42262214 | 42262155 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42261368 | 42261475 | 42261368 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42260873 | 42260952 | 42260873 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42259555 | 42259717 | 42259555 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42259159 | 42259233 | 42259159 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42258934 | 42259019 | 42258934 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42258633 | 42258752 | 42258633 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42258103 | 42258147 | 42258103 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | CDS | 42257931 | 42258015 | 42257931 | ID=Msa0851800-mRNA-1:cds;Parent=Msa0851800-mRNA-1 |
| chr5_4 | three_prime_UTR | 42257606 | 42257930 | 42257606 | ID=Msa0851800-mRNA-1:three_prime_utr;Parent=Msa0851800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
