Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145140 | XP_003589186.1 | 96.200 | 421 | 16 | 0 | 1 | 421 | 1 | 421 | 0.0 | 837 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145140 | sp|P17859|AMYA_VIGMU | 85.036 | 421 | 63 | 0 | 1 | 421 | 1 | 421 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145140 | G7I3K2 | 96.200 | 421 | 16 | 0 | 1 | 421 | 1 | 421 | 0.0 | 837 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026650 | Msa0145140 | 0.960643 | 8.634834e-119 | -8.615850e-47 |
| Msa0051930 | Msa0145140 | 0.922198 | 1.342729e-88 | -8.615850e-47 |
| Msa0145140 | Msa0145230 | 0.909943 | 3.254079e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145140 | MtrunA17_Chr1g0153391 | 96.200 | 421 | 16 | 0 | 1 | 421 | 1 | 421 | 0.0 | 837 |
| Msa0145140 | MtrunA17_Chr1g0157251 | 46.437 | 407 | 199 | 8 | 19 | 421 | 40 | 431 | 4.53e-126 | 372 |
| Msa0145140 | MtrunA17_Chr7g0218861 | 48.130 | 401 | 193 | 7 | 25 | 420 | 569 | 959 | 1.37e-125 | 387 |
| Msa0145140 | MtrunA17_Chr8g0362571 | 48.120 | 399 | 197 | 6 | 25 | 422 | 521 | 910 | 3.38e-123 | 379 |
| Msa0145140 | MtrunA17_Chr1g0153421 | 69.369 | 222 | 67 | 1 | 202 | 423 | 1 | 221 | 2.69e-108 | 318 |
| Msa0145140 | MtrunA17_Chr1g0153411 | 60.500 | 200 | 74 | 4 | 1 | 197 | 1 | 198 | 3.11e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145140 | AT4G25000.1 | 66.509 | 424 | 133 | 6 | 1 | 421 | 4 | 421 | 0.0 | 571 |
| Msa0145140 | AT1G76130.2 | 46.135 | 401 | 197 | 8 | 25 | 421 | 27 | 412 | 4.98e-124 | 366 |
| Msa0145140 | AT1G76130.1 | 46.135 | 401 | 197 | 8 | 25 | 421 | 27 | 412 | 4.98e-124 | 366 |
| Msa0145140 | AT1G69830.1 | 47.525 | 404 | 194 | 8 | 25 | 423 | 497 | 887 | 1.49e-120 | 372 |
Find 90 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAGGTGAACTTGTTAAT+TGG | 0.215478 | 1_4:-4789078 | Msa0145140:CDS |
| AATTGGCTCAAAACTGATAT+TGG | 0.241670 | 1_4:-4789256 | Msa0145140:CDS |
| AAGCAATGGATTCTCTTCTT+TGG | 0.263300 | 1_4:-4790740 | None:intergenic |
| ATTGGTATAAAACCAGAAAA+TGG | 0.275218 | 1_4:-4788935 | Msa0145140:CDS |
| TAGAATAACCAAAATTTATA+TGG | 0.276397 | 1_4:-4789191 | Msa0145140:CDS |
| TGAGTGCTATAAATACTATT+TGG | 0.303705 | 1_4:-4788317 | Msa0145140:CDS |
| TCCTGATTCAAAACTTGATT+GGG | 0.305041 | 1_4:-4789416 | Msa0145140:CDS |
| TAACAGTGAATGTTATATTC+TGG | 0.324353 | 1_4:+4788217 | None:intergenic |
| CTCCTGATTCAAAACTTGAT+TGG | 0.329202 | 1_4:-4789417 | Msa0145140:CDS |
| AGATTTCCAAGGTCCATCTT+TGG | 0.347454 | 1_4:+4788396 | None:intergenic |
| TCTATGACCACTTCTTTGAT+TGG | 0.352956 | 1_4:-4788560 | Msa0145140:CDS |
| GGAAAACCACCTGGTTTGAT+TGG | 0.356913 | 1_4:-4788953 | Msa0145140:CDS |
| CTATGACCACTTCTTTGATT+GGG | 0.358529 | 1_4:-4788559 | Msa0145140:CDS |
| GATCTAGATGCATCAAAATA+TGG | 0.359589 | 1_4:-4789577 | Msa0145140:CDS |
| CTTGTTAATTGGGTTGAAAA+TGG | 0.363355 | 1_4:-4789067 | Msa0145140:CDS |
| AATTTCCATGTTGCTACATC+TGG | 0.363952 | 1_4:-4788363 | Msa0145140:CDS |
| TAGAGGTGAACTTGTTAATT+GGG | 0.373990 | 1_4:-4789077 | Msa0145140:CDS |
| TTTATTGATAATCATGATAC+AGG | 0.381056 | 1_4:-4788905 | Msa0145140:CDS |
| GGAATTTATTGCCTCTTTGA+AGG | 0.394854 | 1_4:-4789445 | Msa0145140:CDS |
| AGTTATCTGAATGGATGAAT+TGG | 0.402706 | 1_4:-4789273 | Msa0145140:CDS |
| TACTCTCCGACTGCAAAATC+TGG | 0.406961 | 1_4:+4789157 | None:intergenic |
| ATGCTGGAATTACACATGTT+TGG | 0.408607 | 1_4:-4790481 | Msa0145140:CDS |
| GTTAGAGAAAGTACTATTGA+TGG | 0.413060 | 1_4:+4788803 | None:intergenic |
| CTCTCCACTATCAAGGTTCC+CGG | 0.421392 | 1_4:+4789348 | None:intergenic |
| TCTAGATCATACAGTCTTCC+CGG | 0.429494 | 1_4:+4789592 | None:intergenic |
| TTTAATCCAGGATATCTTCC+GGG | 0.436223 | 1_4:-4789610 | Msa0145140:intron |
| AGTACTATTGATGGAGTCCC+TGG | 0.447084 | 1_4:+4788812 | None:intergenic |
| ATTCCAGCATTTGCTAGGTC+AGG | 0.449113 | 1_4:+4790494 | None:intergenic |
| TATTGGAATTCGCTTTCTTA+CGG | 0.453954 | 1_4:-4789136 | Msa0145140:CDS |
| CAGGTTCAACTCAGAAACTT+TGG | 0.458721 | 1_4:-4788886 | Msa0145140:CDS |
| TCCTTCTGATAAAGTCATGC+AGG | 0.462173 | 1_4:-4788858 | Msa0145140:CDS |
| CTTCTTTGATTGGGGACTGA+AGG | 0.464178 | 1_4:-4788550 | Msa0145140:CDS |
| TCGCTTTCTTACGGACAAGA+TGG | 0.467894 | 1_4:-4789127 | Msa0145140:CDS |
| AACAAGATTATTGTAAAGAT+AGG | 0.470619 | 1_4:-4788420 | Msa0145140:CDS |
| ATGACTTTATCAGAAGGAAA+TGG | 0.486625 | 1_4:+4788863 | None:intergenic |
| TATGACCACTTCTTTGATTG+GGG | 0.487867 | 1_4:-4788558 | Msa0145140:CDS |
| TGGAGGTTGAAAGATTCAAA+TGG | 0.490377 | 1_4:-4788974 | Msa0145140:CDS |
| AGCAGCTTGAAGAATCCCTT+TGG | 0.493729 | 1_4:+4789012 | None:intergenic |
| TGTAAAGATAGGACCAAAGA+TGG | 0.501815 | 1_4:-4788409 | Msa0145140:CDS |
| GTGTAATTCCAGCATTTGCT+AGG | 0.503775 | 1_4:+4790489 | None:intergenic |
| GTGCAATTAGACAGAGGAAT+GGG | 0.509731 | 1_4:-4788509 | Msa0145140:CDS |
| GCTTACATTCTAACACATCC+AGG | 0.510803 | 1_4:-4788830 | Msa0145140:CDS |
| CTGTACAAGGAGAACTTTGG+AGG | 0.514098 | 1_4:-4788991 | Msa0145140:CDS |
| CCTCCTCCATCTCAAAGTGT+TGG | 0.516703 | 1_4:-4790455 | Msa0145140:CDS |
| TCATCTTTGCAAATGAAAGA+TGG | 0.518192 | 1_4:+4789391 | None:intergenic |
| TGTAGCAACATGGAAATTTG+AGG | 0.519009 | 1_4:+4788368 | None:intergenic |
| ATTCTTCAAGCTGCTGTACA+AGG | 0.520893 | 1_4:-4789004 | Msa0145140:CDS |
| TCTCAAAGTGTTGGCCCTCA+AGG | 0.524248 | 1_4:-4790446 | Msa0145140:intron |
| CATAGCCCTCTCCACTATCA+AGG | 0.524533 | 1_4:+4789341 | None:intergenic |
| ATTCCTGACCTAGCAAATGC+TGG | 0.524700 | 1_4:-4790497 | Msa0145140:CDS |
| AAAGCAGAAGAAGCTAAAAG+AGG | 0.530488 | 1_4:+4790684 | None:intergenic |
| GGCACCGGGAACCTTGATAG+TGG | 0.534257 | 1_4:-4789352 | Msa0145140:CDS |
| TTTATTGCCTCTTTGAAGGT+GGG | 0.537291 | 1_4:-4789441 | Msa0145140:CDS |
| ACTGCTTATTCTGATGGCAC+CGG | 0.544916 | 1_4:-4789367 | Msa0145140:CDS |
| CAAAGAGGCAATAAATTCCT+CGG | 0.550411 | 1_4:+4789449 | None:intergenic |
| ATAGGACCAAAGATGGACCT+TGG | 0.553570 | 1_4:-4788402 | Msa0145140:CDS |
| CTGCTGTACAAGGAGAACTT+TGG | 0.555296 | 1_4:-4788994 | Msa0145140:CDS |
| CTGCTTATTCTGATGGCACC+GGG | 0.555830 | 1_4:-4789366 | Msa0145140:CDS |
| GTAGCAACATGGAAATTTGA+GGG | 0.557475 | 1_4:+4788369 | None:intergenic |
| ATTTATTGCCTCTTTGAAGG+TGG | 0.559530 | 1_4:-4789442 | Msa0145140:CDS |
| AGAACAGCAGAAAGAAAAGA+TGG | 0.561548 | 1_4:-4789472 | Msa0145140:CDS |
| CCTTCTGATAAAGTCATGCA+GGG | 0.563584 | 1_4:-4788857 | Msa0145140:CDS |
| TTGAGGGAATAAGATTTCCA+AGG | 0.564275 | 1_4:+4788385 | None:intergenic |
| TGAGGGCCAACACTTTGAGA+TGG | 0.573353 | 1_4:+4790449 | None:intergenic |
| TCAGTCCCCAATCAAAGAAG+TGG | 0.586468 | 1_4:+4788553 | None:intergenic |
| GATGACACTGCTTATTCTGA+TGG | 0.586526 | 1_4:-4789373 | Msa0145140:CDS |
| TGGACAAGACTATGCTGTGT+GGG | 0.591009 | 1_4:-4788343 | Msa0145140:CDS |
| AATTGGGTTGAAAATGGTGG+CGG | 0.595388 | 1_4:-4789061 | Msa0145140:CDS |
| GCAGAAAGAAAAGATGGCCG+AGG | 0.596444 | 1_4:-4789466 | Msa0145140:CDS |
| CCAACACTTTGAGATGGAGG+AGG | 0.598534 | 1_4:+4790455 | None:intergenic |
| GGGCCAACACTTTGAGATGG+AGG | 0.600166 | 1_4:+4790452 | None:intergenic |
| CCCTGCATGACTTTATCAGA+AGG | 0.602185 | 1_4:+4788857 | None:intergenic |
| GGATTGAGATGATCAATGTC+AGG | 0.603905 | 1_4:+4789310 | None:intergenic |
| CTTGTCCAGATGTAGCAACA+TGG | 0.607325 | 1_4:+4788358 | None:intergenic |
| AACTGGGAATCAAGTAACAA+AGG | 0.607754 | 1_4:-4790548 | Msa0145140:CDS |
| GATTCAAATGGAAAACCACC+TGG | 0.610843 | 1_4:-4788962 | Msa0145140:CDS |
| GGGAACCTTGATAGTGGAGA+GGG | 0.620769 | 1_4:-4789346 | Msa0145140:CDS |
| AGTGCAATTAGACAGAGGAA+TGG | 0.622780 | 1_4:-4788510 | Msa0145140:CDS |
| CCTGATTCAAAACTTGATTG+GGG | 0.623674 | 1_4:-4789415 | Msa0145140:CDS |
| GTTAATTGGGTTGAAAATGG+TGG | 0.627623 | 1_4:-4789064 | Msa0145140:CDS |
| CTTACATTCTAACACATCCA+GGG | 0.632166 | 1_4:-4788829 | Msa0145140:CDS |
| AATCAAGTAACAAAGGAGGA+TGG | 0.633320 | 1_4:-4790541 | Msa0145140:CDS |
| TATAATCAAGATGCAGCTAG+AGG | 0.641274 | 1_4:-4789094 | Msa0145140:CDS |
| CAGGAGTCCCACCTTCAAAG+AGG | 0.644880 | 1_4:+4789434 | None:intergenic |
| CAACACTTTGAGATGGAGGA+GGG | 0.651277 | 1_4:+4790456 | None:intergenic |
| CGGGAACCTTGATAGTGGAG+AGG | 0.661491 | 1_4:-4789347 | Msa0145140:CDS |
| TGGGAATCAAGTAACAAAGG+AGG | 0.677530 | 1_4:-4790545 | Msa0145140:CDS |
| TTTATACCAATCAAACCAGG+TGG | 0.686102 | 1_4:+4788947 | None:intergenic |
| AATTGAGTGCAATTAGACAG+AGG | 0.688509 | 1_4:-4788515 | Msa0145140:CDS |
| CTGGACAAGACTATGCTGTG+TGG | 0.700165 | 1_4:-4788344 | Msa0145140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATAATTGTTTTTAC+AGG | - | chr1_4:4788358-4788377 | Msa0145140:CDS | 10.0% |
| !!! | ATATAATAATTGTTTTTACA+GGG | - | chr1_4:4788359-4788378 | Msa0145140:CDS | 10.0% |
| !!! | TATATTTCTATTATAGTATT+AGG | + | chr1_4:4788696-4788715 | None:intergenic | 10.0% |
| !! | ACTATAATAGAAATATAAAT+AGG | - | chr1_4:4788699-4788718 | Msa0145140:intron | 10.0% |
| !! | AAGTATGCAAAAAATTATTT+GGG | + | chr1_4:4789091-4789110 | None:intergenic | 15.0% |
| !! | AAAGTATGCAAAAAATTATT+TGG | + | chr1_4:4789092-4789111 | None:intergenic | 15.0% |
| !!! | TTGTTAATTTTTTTTAATCC+AGG | - | chr1_4:4789312-4789331 | Msa0145140:CDS | 15.0% |
| !!! | ATATAAATTTTGGTTATTCT+AGG | + | chr1_4:4789744-4789763 | None:intergenic | 15.0% |
| !! | TAGAATAACCAAAATTTATA+TGG | - | chr1_4:4789743-4789762 | Msa0145140:intron | 15.0% |
| !!! | ATTATATTTTTATGCAGTTA+TGG | - | chr1_4:4790333-4790352 | Msa0145140:intron | 15.0% |
| !! | CACTCATAATGAAATATTAA+TGG | - | chr1_4:4788533-4788552 | Msa0145140:CDS | 20.0% |
| !! | TAATTAGAGAATCATATGTT+TGG | + | chr1_4:4788595-4788614 | None:intergenic | 20.0% |
| !! | AATTGATATGTAATCATGTT+AGG | - | chr1_4:4788625-4788644 | Msa0145140:intron | 20.0% |
| !! | AGCAACATAATAATAGTATT+AGG | - | chr1_4:4788806-4788825 | Msa0145140:intron | 20.0% |
| !!! | TAATAGTATTAGGTTGTTTT+TGG | - | chr1_4:4788816-4788835 | Msa0145140:intron | 20.0% |
| !! | ATTTAAAAACTATCTTGTTG+TGG | - | chr1_4:4789065-4789084 | Msa0145140:CDS | 20.0% |
| !! | TCGTTTAATAAATATAAAGC+TGG | - | chr1_4:4789119-4789138 | Msa0145140:CDS | 20.0% |
| !! | AATAAATATAAAGCTGGATA+TGG | - | chr1_4:4789125-4789144 | Msa0145140:CDS | 20.0% |
| !! | ATAGTTACTAACAAGTAAAT+AGG | - | chr1_4:4789151-4789170 | Msa0145140:CDS | 20.0% |
| !!! | GAATCTTTATTCATTTTAAC+CGG | - | chr1_4:4789264-4789283 | Msa0145140:CDS | 20.0% |
| !!! | AATCTTTATTCATTTTAACC+GGG | - | chr1_4:4789265-4789284 | Msa0145140:CDS | 20.0% |
| !!! | AGTGTTTTCCATATAAATTT+TGG | + | chr1_4:4789754-4789773 | None:intergenic | 20.0% |
| !!! | TTTATTGATAATCATGATAC+AGG | - | chr1_4:4790029-4790048 | Msa0145140:intron | 20.0% |
| !! | ACATGATATAAAAAGTGAAA+AGG | + | chr1_4:4790156-4790175 | None:intergenic | 20.0% |
| !! | AACAAGATTATTGTAAAGAT+AGG | - | chr1_4:4790514-4790533 | Msa0145140:CDS | 20.0% |
| ! | TATACATGCACATTTGATTA+AGG | + | chr1_4:4788337-4788356 | None:intergenic | 25.0% |
| ! | ACAAAAATGTATTACCTTGA+GGG | + | chr1_4:4788505-4788524 | None:intergenic | 25.0% |
| ! | TACAAAAATGTATTACCTTG+AGG | + | chr1_4:4788506-4788525 | None:intergenic | 25.0% |
| ! | ATCATATGTTTGGAAAATGA+AGG | + | chr1_4:4788585-4788604 | None:intergenic | 25.0% |
| ! | CAAGACTAATGGTTAAATTT+AGG | - | chr1_4:4789181-4789200 | Msa0145140:CDS | 25.0% |
| ! | CAGCTTGTATTTAAATACTA+TGG | + | chr1_4:4789207-4789226 | None:intergenic | 25.0% |
| !!! | AAGCTGTATACATTTTTTAG+AGG | - | chr1_4:4789221-4789240 | Msa0145140:CDS | 25.0% |
| !!! | ATCTTTATTCATTTTAACCG+GGG | - | chr1_4:4789266-4789285 | Msa0145140:CDS | 25.0% |
| ! | TACAAAAAGAGTTATCTGAA+TGG | - | chr1_4:4789652-4789671 | Msa0145140:intron | 25.0% |
| !! | AAAACTGATATTGGATTTTC+TGG | - | chr1_4:4789687-4789706 | Msa0145140:intron | 25.0% |
| !!! | TGGAGATTTGATTTTGTTAA+AGG | - | chr1_4:4789711-4789730 | Msa0145140:intron | 25.0% |
| !!! | CATTTGATTTTACTACCAAA+GGG | - | chr1_4:4789907-4789926 | Msa0145140:intron | 25.0% |
| ! | ATTGGTATAAAACCAGAAAA+TGG | - | chr1_4:4789999-4790018 | Msa0145140:intron | 25.0% |
| !! | ATAAATGTTACACCATTTTC+TGG | + | chr1_4:4790014-4790033 | None:intergenic | 25.0% |
| !! | TTTGAGCATTGTATAAAAGA+CGG | - | chr1_4:4790179-4790198 | Msa0145140:intron | 25.0% |
| ! | TGAGTGCTATAAATACTATT+TGG | - | chr1_4:4790617-4790636 | Msa0145140:intron | 25.0% |
| !!! | CAAGATTCTTTGTTTTTTTG+GGG | + | chr1_4:4790685-4790704 | None:intergenic | 25.0% |
| !!! | GCAAGATTCTTTGTTTTTTT+GGG | + | chr1_4:4790686-4790705 | None:intergenic | 25.0% |
| !!! | TGCAAGATTCTTTGTTTTTT+TGG | + | chr1_4:4790687-4790706 | None:intergenic | 25.0% |
| ! | TAACAGTGAATGTTATATTC+TGG | + | chr1_4:4790720-4790739 | None:intergenic | 25.0% |
| TATTTCATTATGAGTGAAGC+AGG | + | chr1_4:4788529-4788548 | None:intergenic | 30.0% | |
| TAGGTACAATTCAAGACTAA+TGG | - | chr1_4:4789170-4789189 | Msa0145140:CDS | 30.0% | |
| !! | TCTTTATTCATTTTAACCGG+GGG | - | chr1_4:4789267-4789286 | Msa0145140:CDS | 30.0% |
| ! | TTTTAATCCAGGATATCTTC+CGG | - | chr1_4:4789323-4789342 | Msa0145140:CDS | 30.0% |
| GATCTAGATGCATCAAAATA+TGG | - | chr1_4:4789357-4789376 | Msa0145140:CDS | 30.0% | |
| TCCTGATTCAAAACTTGATT+GGG | - | chr1_4:4789518-4789537 | Msa0145140:CDS | 30.0% | |
| TCATCTTTGCAAATGAAAGA+TGG | + | chr1_4:4789546-4789565 | None:intergenic | 30.0% | |
| ! | GATAACTCTTTTTGTACTTG+AGG | + | chr1_4:4789648-4789667 | None:intergenic | 30.0% |
| AGTTATCTGAATGGATGAAT+TGG | - | chr1_4:4789661-4789680 | Msa0145140:intron | 30.0% | |
| ! | AATTGGCTCAAAACTGATAT+TGG | - | chr1_4:4789678-4789697 | Msa0145140:intron | 30.0% |
| TATTGGAATTCGCTTTCTTA+CGG | - | chr1_4:4789798-4789817 | Msa0145140:intron | 30.0% | |
| !! | TAGAGGTGAACTTGTTAATT+GGG | - | chr1_4:4789857-4789876 | Msa0145140:intron | 30.0% |
| !! | CTTGTTAATTGGGTTGAAAA+TGG | - | chr1_4:4789867-4789886 | Msa0145140:intron | 30.0% |
| !! | GCATTTGATTTTACTACCAA+AGG | - | chr1_4:4789906-4789925 | Msa0145140:intron | 30.0% |
| ATGACTTTATCAGAAGGAAA+TGG | + | chr1_4:4790074-4790093 | None:intergenic | 30.0% | |
| !! | GTTAGAGAAAGTACTATTGA+TGG | + | chr1_4:4790134-4790153 | None:intergenic | 30.0% |
| GTATAAAAGACGGAAATTGA+TGG | - | chr1_4:4790189-4790208 | Msa0145140:intron | 30.0% | |
| GAGGAAAAATAGAAAGACAG+AGG | + | chr1_4:4788234-4788253 | None:intergenic | 35.0% | |
| AAAGCAGAAGAAGCTAAAAG+AGG | + | chr1_4:4788253-4788272 | None:intergenic | 35.0% | |
| !! | TGTTTTTACAGGGATTCAAC+TGG | - | chr1_4:4788369-4788388 | Msa0145140:CDS | 35.0% |
| ! | GTTTTTACAGGGATTCAACT+GGG | - | chr1_4:4788370-4788389 | Msa0145140:CDS | 35.0% |
| AACTGGGAATCAAGTAACAA+AGG | - | chr1_4:4788386-4788405 | Msa0145140:CDS | 35.0% | |
| AATCAAGTAACAAAGGAGGA+TGG | - | chr1_4:4788393-4788412 | Msa0145140:CDS | 35.0% | |
| ATGCTGGAATTACACATGTT+TGG | - | chr1_4:4788453-4788472 | Msa0145140:CDS | 35.0% | |
| ! | TACATGATCAAAGTTCTAGC+AGG | - | chr1_4:4788775-4788794 | Msa0145140:intron | 35.0% |
| CAGAGAATCACAGTCAAATA+GGG | - | chr1_4:4788862-4788881 | Msa0145140:CDS | 35.0% | |
| TTTAATCCAGGATATCTTCC+GGG | - | chr1_4:4789324-4789343 | Msa0145140:CDS | 35.0% | |
| ! | CTTTTCTTTCTGCTGTTCTA+TGG | + | chr1_4:4789461-4789480 | None:intergenic | 35.0% |
| AGAACAGCAGAAAGAAAAGA+TGG | - | chr1_4:4789462-4789481 | Msa0145140:CDS | 35.0% | |
| CAAAGAGGCAATAAATTCCT+CGG | + | chr1_4:4789488-4789507 | None:intergenic | 35.0% | |
| GGAATTTATTGCCTCTTTGA+AGG | - | chr1_4:4789489-4789508 | Msa0145140:CDS | 35.0% | |
| ! | ATTTATTGCCTCTTTGAAGG+TGG | - | chr1_4:4789492-4789511 | Msa0145140:CDS | 35.0% |
| ! | TTTATTGCCTCTTTGAAGGT+GGG | - | chr1_4:4789493-4789512 | Msa0145140:CDS | 35.0% |
| CTCCTGATTCAAAACTTGAT+TGG | - | chr1_4:4789517-4789536 | Msa0145140:CDS | 35.0% | |
| CCTGATTCAAAACTTGATTG+GGG | - | chr1_4:4789519-4789538 | Msa0145140:CDS | 35.0% | |
| ! | CTGATATTGGATTTTCTGGA+TGG | - | chr1_4:4789691-4789710 | Msa0145140:intron | 35.0% |
| TATAATCAAGATGCAGCTAG+AGG | - | chr1_4:4789840-4789859 | Msa0145140:intron | 35.0% | |
| !! | CTAGAGGTGAACTTGTTAAT+TGG | - | chr1_4:4789856-4789875 | Msa0145140:intron | 35.0% |
| !! | GTTAATTGGGTTGAAAATGG+TGG | - | chr1_4:4789870-4789889 | Msa0145140:intron | 35.0% |
| TGGAGGTTGAAAGATTCAAA+TGG | - | chr1_4:4789960-4789979 | Msa0145140:intron | 35.0% | |
| TTTATACCAATCAAACCAGG+TGG | + | chr1_4:4789990-4790009 | None:intergenic | 35.0% | |
| !! | GGTTTTATACCAATCAAACC+AGG | + | chr1_4:4789993-4790012 | None:intergenic | 35.0% |
| CTTACATTCTAACACATCCA+GGG | - | chr1_4:4790105-4790124 | Msa0145140:intron | 35.0% | |
| TCTATGACCACTTCTTTGAT+TGG | - | chr1_4:4790374-4790393 | Msa0145140:intron | 35.0% | |
| CTATGACCACTTCTTTGATT+GGG | - | chr1_4:4790375-4790394 | Msa0145140:intron | 35.0% | |
| TATGACCACTTCTTTGATTG+GGG | - | chr1_4:4790376-4790395 | Msa0145140:intron | 35.0% | |
| AATTGAGTGCAATTAGACAG+AGG | - | chr1_4:4790419-4790438 | Msa0145140:intron | 35.0% | |
| TGTAAAGATAGGACCAAAGA+TGG | - | chr1_4:4790525-4790544 | Msa0145140:CDS | 35.0% | |
| TTGAGGGAATAAGATTTCCA+AGG | + | chr1_4:4790552-4790571 | None:intergenic | 35.0% | |
| GTAGCAACATGGAAATTTGA+GGG | + | chr1_4:4790568-4790587 | None:intergenic | 35.0% | |
| TGTAGCAACATGGAAATTTG+AGG | + | chr1_4:4790569-4790588 | None:intergenic | 35.0% | |
| AATTTCCATGTTGCTACATC+TGG | - | chr1_4:4790571-4790590 | Msa0145140:intron | 35.0% | |
| TGGGAATCAAGTAACAAAGG+AGG | - | chr1_4:4788389-4788408 | Msa0145140:CDS | 40.0% | |
| GTGTAATTCCAGCATTTGCT+AGG | + | chr1_4:4788448-4788467 | None:intergenic | 40.0% | |
| GCAGAGAATCACAGTCAAAT+AGG | - | chr1_4:4788861-4788880 | Msa0145140:CDS | 40.0% | |
| ATGTCTCCGAAACTGCAAAT+CGG | + | chr1_4:4788909-4788928 | None:intergenic | 40.0% | |
| TCATATTCAGCCTATATCGC+AGG | + | chr1_4:4788992-4789011 | None:intergenic | 40.0% | |
| TAATGTATGAACAGAACCCC+CGG | + | chr1_4:4789286-4789305 | None:intergenic | 40.0% | |
| TCTAGATCATACAGTCTTCC+CGG | + | chr1_4:4789345-4789364 | None:intergenic | 40.0% | |
| !!! | CCCCAATCAAGTTTTGAATC+AGG | + | chr1_4:4789522-4789541 | None:intergenic | 40.0% |
| GATGACACTGCTTATTCTGA+TGG | - | chr1_4:4789561-4789580 | Msa0145140:CDS | 40.0% | |
| GGATTGAGATGATCAATGTC+AGG | + | chr1_4:4789627-4789646 | None:intergenic | 40.0% | |
| ! | ACTTCACCAGATTTTGCAGT+CGG | - | chr1_4:4789771-4789790 | Msa0145140:intron | 40.0% |
| !! | ATTTTGCAGTCGGAGAGTAT+TGG | - | chr1_4:4789781-4789800 | Msa0145140:intron | 40.0% |
| !! | AATTGGGTTGAAAATGGTGG+CGG | - | chr1_4:4789873-4789892 | Msa0145140:intron | 40.0% |
| ATTCTTCAAGCTGCTGTACA+AGG | - | chr1_4:4789930-4789949 | Msa0145140:intron | 40.0% | |
| GATTCAAATGGAAAACCACC+TGG | - | chr1_4:4789972-4789991 | Msa0145140:intron | 40.0% | |
| CAGGTTCAACTCAGAAACTT+TGG | - | chr1_4:4790048-4790067 | Msa0145140:intron | 40.0% | |
| TCCTTCTGATAAAGTCATGC+AGG | - | chr1_4:4790076-4790095 | Msa0145140:intron | 40.0% | |
| CCTTCTGATAAAGTCATGCA+GGG | - | chr1_4:4790077-4790096 | Msa0145140:intron | 40.0% | |
| GCTTACATTCTAACACATCC+AGG | - | chr1_4:4790104-4790123 | Msa0145140:intron | 40.0% | |
| ATAGTCAAATAGTGACTGCG+CGG | - | chr1_4:4790215-4790234 | Msa0145140:intron | 40.0% | |
| AGTGCAATTAGACAGAGGAA+TGG | - | chr1_4:4790424-4790443 | Msa0145140:intron | 40.0% | |
| GTGCAATTAGACAGAGGAAT+GGG | - | chr1_4:4790425-4790444 | Msa0145140:intron | 40.0% | |
| AGATTTCCAAGGTCCATCTT+TGG | + | chr1_4:4790541-4790560 | None:intergenic | 40.0% | |
| ATTCCTGACCTAGCAAATGC+TGG | - | chr1_4:4788437-4788456 | Msa0145140:CDS | 45.0% | |
| ! | ATTCCAGCATTTGCTAGGTC+AGG | + | chr1_4:4788443-4788462 | None:intergenic | 45.0% |
| !! | CAACACTTTGAGATGGAGGA+GGG | + | chr1_4:4788481-4788500 | None:intergenic | 45.0% |
| !! | TCACAGCCGATTTGCAGTTT+CGG | - | chr1_4:4788900-4788919 | Msa0145140:CDS | 45.0% |
| TCACTGTAGTCCTGCGATAT+AGG | - | chr1_4:4788979-4788998 | Msa0145140:CDS | 45.0% | |
| TGTTCTGATCGCATGACTGT+AGG | - | chr1_4:4789033-4789052 | Msa0145140:CDS | 45.0% | |
| GTTCTGATCGCATGACTGTA+GGG | - | chr1_4:4789034-4789053 | Msa0145140:CDS | 45.0% | |
| ACTGCTTATTCTGATGGCAC+CGG | - | chr1_4:4789567-4789586 | Msa0145140:CDS | 45.0% | |
| TACTCTCCGACTGCAAAATC+TGG | + | chr1_4:4789780-4789799 | None:intergenic | 45.0% | |
| TCGCTTTCTTACGGACAAGA+TGG | - | chr1_4:4789807-4789826 | Msa0145140:intron | 45.0% | |
| AGCAGCTTGAAGAATCCCTT+TGG | + | chr1_4:4789925-4789944 | None:intergenic | 45.0% | |
| CTGCTGTACAAGGAGAACTT+TGG | - | chr1_4:4789940-4789959 | Msa0145140:intron | 45.0% | |
| CTGTACAAGGAGAACTTTGG+AGG | - | chr1_4:4789943-4789962 | Msa0145140:intron | 45.0% | |
| ! | GGAAAACCACCTGGTTTGAT+TGG | - | chr1_4:4789981-4790000 | Msa0145140:intron | 45.0% |
| CCCTGCATGACTTTATCAGA+AGG | + | chr1_4:4790080-4790099 | None:intergenic | 45.0% | |
| AGTACTATTGATGGAGTCCC+TGG | + | chr1_4:4790125-4790144 | None:intergenic | 45.0% | |
| TAGTCAAATAGTGACTGCGC+GGG | - | chr1_4:4790216-4790235 | Msa0145140:intron | 45.0% | |
| TCAGTCCCCAATCAAAGAAG+TGG | + | chr1_4:4790384-4790403 | None:intergenic | 45.0% | |
| CTTCTTTGATTGGGGACTGA+AGG | - | chr1_4:4790384-4790403 | Msa0145140:intron | 45.0% | |
| ATAGGACCAAAGATGGACCT+TGG | - | chr1_4:4790532-4790551 | Msa0145140:CDS | 45.0% | |
| CTTGTCCAGATGTAGCAACA+TGG | + | chr1_4:4790579-4790598 | None:intergenic | 45.0% | |
| TGGACAAGACTATGCTGTGT+GGG | - | chr1_4:4790591-4790610 | Msa0145140:intron | 45.0% | |
| !! | CCAACACTTTGAGATGGAGG+AGG | + | chr1_4:4788482-4788501 | None:intergenic | 50.0% |
| CCTCCTCCATCTCAAAGTGT+TGG | - | chr1_4:4788479-4788498 | Msa0145140:CDS | 50.0% | |
| ! | TGAGGGCCAACACTTTGAGA+TGG | + | chr1_4:4788488-4788507 | None:intergenic | 50.0% |
| !! | TCTCAAAGTGTTGGCCCTCA+AGG | - | chr1_4:4788488-4788507 | Msa0145140:CDS | 50.0% |
| AGTCTTCCCGGAAGATATCC+TGG | + | chr1_4:4789333-4789352 | None:intergenic | 50.0% | |
| GCAGAAAGAAAAGATGGCCG+AGG | - | chr1_4:4789468-4789487 | Msa0145140:CDS | 50.0% | |
| CTGCTTATTCTGATGGCACC+GGG | - | chr1_4:4789568-4789587 | Msa0145140:CDS | 50.0% | |
| CTCTCCACTATCAAGGTTCC+CGG | + | chr1_4:4789589-4789608 | None:intergenic | 50.0% | |
| !! | GGGAACCTTGATAGTGGAGA+GGG | - | chr1_4:4789588-4789607 | Msa0145140:CDS | 50.0% |
| CATAGCCCTCTCCACTATCA+AGG | + | chr1_4:4789596-4789615 | None:intergenic | 50.0% | |
| CTGGACAAGACTATGCTGTG+TGG | - | chr1_4:4790590-4790609 | Msa0145140:intron | 50.0% | |
| !! | GGGCCAACACTTTGAGATGG+AGG | + | chr1_4:4788485-4788504 | None:intergenic | 55.0% |
| CAGGAGTCCCACCTTCAAAG+AGG | + | chr1_4:4789503-4789522 | None:intergenic | 55.0% | |
| !! | CGGGAACCTTGATAGTGGAG+AGG | - | chr1_4:4789587-4789606 | Msa0145140:CDS | 55.0% |
| ! | GGCACCGGGAACCTTGATAG+TGG | - | chr1_4:4789582-4789601 | Msa0145140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4788199 | 4790757 | 4788199 | ID=Msa0145140;Name=Msa0145140 |
| chr1_4 | mRNA | 4788199 | 4790757 | 4788199 | ID=Msa0145140-mRNA-1;Parent=Msa0145140;Name=Msa0145140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.75|1|1|1|4|106|432 |
| chr1_4 | exon | 4788199 | 4788583 | 4788199 | ID=Msa0145140-mRNA-1:exon:2042;Parent=Msa0145140-mRNA-1 |
| chr1_4 | exon | 4788817 | 4789622 | 4788817 | ID=Msa0145140-mRNA-1:exon:2041;Parent=Msa0145140-mRNA-1 |
| chr1_4 | exon | 4790447 | 4790576 | 4790447 | ID=Msa0145140-mRNA-1:exon:2040;Parent=Msa0145140-mRNA-1 |
| chr1_4 | exon | 4790674 | 4790757 | 4790674 | ID=Msa0145140-mRNA-1:exon:2039;Parent=Msa0145140-mRNA-1 |
| chr1_4 | CDS | 4790674 | 4790757 | 4790674 | ID=Msa0145140-mRNA-1:cds;Parent=Msa0145140-mRNA-1 |
| chr1_4 | CDS | 4790447 | 4790576 | 4790447 | ID=Msa0145140-mRNA-1:cds;Parent=Msa0145140-mRNA-1 |
| chr1_4 | CDS | 4788817 | 4789622 | 4788817 | ID=Msa0145140-mRNA-1:cds;Parent=Msa0145140-mRNA-1 |
| chr1_4 | CDS | 4788305 | 4788583 | 4788305 | ID=Msa0145140-mRNA-1:cds;Parent=Msa0145140-mRNA-1 |
| chr1_4 | three_prime_UTR | 4788199 | 4788304 | 4788199 | ID=Msa0145140-mRNA-1:three_prime_utr;Parent=Msa0145140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
