AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051930 MtrunA17_Chr1g0153391 96.857 350 11 0 2 351 72 421 0.0 702
Msa0051930 MtrunA17_Chr1g0153421 69.683 221 66 1 132 352 1 220 3.00e-109 318
Msa0051930 MtrunA17_Chr7g0218861 48.305 354 169 6 2 350 615 959 7.48e-109 340
Msa0051930 MtrunA17_Chr1g0157251 46.328 354 172 7 2 351 92 431 1.55e-107 322
Msa0051930 MtrunA17_Chr8g0362571 48.011 352 173 6 2 352 568 910 1.03e-104 328
Msa0051930 MtrunA17_Chr1g0153411 62.698 126 45 2 2 127 75 198 1.78e-50 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051930 AT4G25000.1 67.806 351 108 3 2 351 75 421 5.78e-176 496
Msa0051930 AT1G76130.2 46.328 354 172 7 2 351 73 412 3.52e-107 320
Msa0051930 AT1G76130.1 46.328 354 172 7 2 351 73 412 3.52e-107 320
Msa0051930 AT1G69830.1 47.339 357 170 8 2 353 544 887 3.04e-102 321

Find 76 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAGGTGAACTTGTTAAT+TGG 0.215478 1_2:+6113678 Msa0051930:CDS
AATTGGCTCAAAACTGATAT+TGG 0.241670 1_2:+6113500 Msa0051930:CDS
ATTGGTATAAAACCAGAAAA+TGG 0.275218 1_2:+6113821 Msa0051930:CDS
TAGAATAACCAAAATTTATA+TGG 0.276397 1_2:+6113565 Msa0051930:CDS
TGAGTGCTATAAATACTATT+TGG 0.303705 1_2:+6114439 Msa0051930:CDS
TCCTGATTCAAAACTTGATT+GGG 0.305041 1_2:+6113340 Msa0051930:CDS
TAACAGTGAATGTTATATTC+TGG 0.324353 1_2:-6114539 None:intergenic
CTCCTGATTCAAAACTTGAT+TGG 0.329202 1_2:+6113339 Msa0051930:CDS
AGATTTCCAAGGTCCATCTT+TGG 0.347454 1_2:-6114360 None:intergenic
TCTATGACCACTTCTTTGAT+TGG 0.352956 1_2:+6114196 Msa0051930:CDS
GGAAAACCACCTGGTTTGAT+TGG 0.356913 1_2:+6113803 Msa0051930:CDS
CTATGACCACTTCTTTGATT+GGG 0.358529 1_2:+6114197 Msa0051930:CDS
GATCTAGATGCATCAAAATA+TGG 0.359589 1_2:+6113179 Msa0051930:CDS
CTTGTTAATTGGGTTGAAAA+TGG 0.363355 1_2:+6113689 Msa0051930:CDS
AATTTCCATGTTGCTACATC+TGG 0.363952 1_2:+6114393 Msa0051930:CDS
TAGAGGTGAACTTGTTAATT+GGG 0.373990 1_2:+6113679 Msa0051930:CDS
TTTATTGATAATCATGATAC+AGG 0.381056 1_2:+6113851 Msa0051930:CDS
GGAATTTATTGCCTCTTTGA+AGG 0.394854 1_2:+6113311 Msa0051930:CDS
AGTTATCTGAATGGATGAAT+TGG 0.402706 1_2:+6113483 Msa0051930:CDS
TACTCTCCGACTGCAAAATC+TGG 0.406961 1_2:-6113599 None:intergenic
GTTAGAGAAAGTACTATTGA+TGG 0.413060 1_2:-6113953 None:intergenic
CTCTCCACTATCAAGGTTCC+CGG 0.421392 1_2:-6113408 None:intergenic
TCTAGATCATACAGTCTTCC+CGG 0.429494 1_2:-6113164 None:intergenic
TTTAATCCAGGATATCTTCC+GGG 0.436223 1_2:+6113146 None:intergenic
AGTACTATTGATGGAGTCCC+TGG 0.447084 1_2:-6113944 None:intergenic
TATTGGAATTCGCTTTCTTA+CGG 0.453954 1_2:+6113620 Msa0051930:CDS
CAGGTTCAACTCAGAAACTT+TGG 0.458721 1_2:+6113870 Msa0051930:CDS
TCCTTCTGATAAAGTCATGC+AGG 0.462173 1_2:+6113898 Msa0051930:CDS
CTTCTTTGATTGGGGACTGA+AGG 0.464178 1_2:+6114206 Msa0051930:CDS
TCGCTTTCTTACGGACAAGA+TGG 0.467894 1_2:+6113629 Msa0051930:CDS
AGTCTTCCCGGAAGATATCC+TGG 0.468300 1_2:-6113152 None:intergenic
AACAAGATTATTGTAAAGAT+AGG 0.470619 1_2:+6114336 Msa0051930:CDS
ATGACTTTATCAGAAGGAAA+TGG 0.486625 1_2:-6113893 None:intergenic
TATGACCACTTCTTTGATTG+GGG 0.487867 1_2:+6114198 Msa0051930:CDS
TGGAGGTTGAAAGATTCAAA+TGG 0.490377 1_2:+6113782 Msa0051930:CDS
AGCAGCTTGAAGAATCCCTT+TGG 0.493729 1_2:-6113744 None:intergenic
TGTAAAGATAGGACCAAAGA+TGG 0.501815 1_2:+6114347 Msa0051930:CDS
GTGCAATTAGACAGAGGAAT+GGG 0.509731 1_2:+6114247 Msa0051930:CDS
GCTTACATTCTAACACATCC+AGG 0.510803 1_2:+6113926 Msa0051930:CDS
CTGTACAAGGAGAACTTTGG+AGG 0.514098 1_2:+6113765 Msa0051930:CDS
TCATCTTTGCAAATGAAAGA+TGG 0.518192 1_2:-6113365 None:intergenic
TGTAGCAACATGGAAATTTG+AGG 0.519009 1_2:-6114388 None:intergenic
ATTCTTCAAGCTGCTGTACA+AGG 0.520893 1_2:+6113752 Msa0051930:CDS
CATAGCCCTCTCCACTATCA+AGG 0.524533 1_2:-6113415 None:intergenic
GGCACCGGGAACCTTGATAG+TGG 0.534257 1_2:+6113404 Msa0051930:CDS
TTTATTGCCTCTTTGAAGGT+GGG 0.537291 1_2:+6113315 Msa0051930:CDS
ACTGCTTATTCTGATGGCAC+CGG 0.544916 1_2:+6113389 Msa0051930:CDS
CAAAGAGGCAATAAATTCCT+CGG 0.550411 1_2:-6113307 None:intergenic
ATAGGACCAAAGATGGACCT+TGG 0.553570 1_2:+6114354 Msa0051930:CDS
CTGCTGTACAAGGAGAACTT+TGG 0.555296 1_2:+6113762 Msa0051930:CDS
CTGCTTATTCTGATGGCACC+GGG 0.555830 1_2:+6113390 Msa0051930:CDS
GTAGCAACATGGAAATTTGA+GGG 0.557475 1_2:-6114387 None:intergenic
ATTTATTGCCTCTTTGAAGG+TGG 0.559530 1_2:+6113314 Msa0051930:CDS
AGAACAGCAGAAAGAAAAGA+TGG 0.561548 1_2:+6113284 Msa0051930:CDS
CCTTCTGATAAAGTCATGCA+GGG 0.563584 1_2:+6113899 Msa0051930:CDS
TTGAGGGAATAAGATTTCCA+AGG 0.564275 1_2:-6114371 None:intergenic
TCAGTCCCCAATCAAAGAAG+TGG 0.586468 1_2:-6114203 None:intergenic
GATGACACTGCTTATTCTGA+TGG 0.586526 1_2:+6113383 Msa0051930:CDS
TGGACAAGACTATGCTGTGT+GGG 0.591009 1_2:+6114413 Msa0051930:CDS
AATTGGGTTGAAAATGGTGG+CGG 0.595388 1_2:+6113695 Msa0051930:CDS
GCAGAAAGAAAAGATGGCCG+AGG 0.596444 1_2:+6113290 Msa0051930:CDS
CCCTGCATGACTTTATCAGA+AGG 0.602185 1_2:-6113899 None:intergenic
GGATTGAGATGATCAATGTC+AGG 0.603905 1_2:-6113446 None:intergenic
CTTGTCCAGATGTAGCAACA+TGG 0.607325 1_2:-6114398 None:intergenic
GATTCAAATGGAAAACCACC+TGG 0.610843 1_2:+6113794 Msa0051930:CDS
GGGAACCTTGATAGTGGAGA+GGG 0.620769 1_2:+6113410 Msa0051930:CDS
AGTGCAATTAGACAGAGGAA+TGG 0.622780 1_2:+6114246 Msa0051930:CDS
CCTGATTCAAAACTTGATTG+GGG 0.623674 1_2:+6113341 Msa0051930:CDS
GTTAATTGGGTTGAAAATGG+TGG 0.627623 1_2:+6113692 Msa0051930:CDS
CTTACATTCTAACACATCCA+GGG 0.632166 1_2:+6113927 Msa0051930:CDS
TATAATCAAGATGCAGCTAG+AGG 0.641274 1_2:+6113662 Msa0051930:CDS
CAGGAGTCCCACCTTCAAAG+AGG 0.644880 1_2:-6113322 None:intergenic
CGGGAACCTTGATAGTGGAG+AGG 0.661491 1_2:+6113409 Msa0051930:CDS
TTTATACCAATCAAACCAGG+TGG 0.686102 1_2:-6113809 None:intergenic
AATTGAGTGCAATTAGACAG+AGG 0.688509 1_2:+6114241 Msa0051930:CDS
CTGGACAAGACTATGCTGTG+TGG 0.700165 1_2:+6114412 Msa0051930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAATTTTGGTTATTCT+AGG - chr1_2:6113566-6113585 None:intergenic 15.0%
!! TAGAATAACCAAAATTTATA+TGG + chr1_2:6113565-6113584 Msa0051930:CDS 15.0%
!!! ATTATATTTTTATGCAGTTA+TGG + chr1_2:6114155-6114174 Msa0051930:intron 15.0%
!!! ATATAAATTTTGGTTATTCT+AGG - chr1_2:6113566-6113585 None:intergenic 15.0%
!! TAGAATAACCAAAATTTATA+TGG + chr1_2:6113565-6113584 Msa0051930:CDS 15.0%
!!! ATTATATTTTTATGCAGTTA+TGG + chr1_2:6114155-6114174 Msa0051930:intron 15.0%
!!! AGTGTTTTCCATATAAATTT+TGG - chr1_2:6113576-6113595 None:intergenic 20.0%
!!! TTTATTGATAATCATGATAC+AGG + chr1_2:6113851-6113870 Msa0051930:CDS 20.0%
!! ACATGATATAAAAAGTGAAA+AGG - chr1_2:6113978-6113997 None:intergenic 20.0%
!! AACAAGATTATTGTAAAGAT+AGG + chr1_2:6114336-6114355 Msa0051930:CDS 20.0%
!!! AGTGTTTTCCATATAAATTT+TGG - chr1_2:6113576-6113595 None:intergenic 20.0%
!!! TTTATTGATAATCATGATAC+AGG + chr1_2:6113851-6113870 Msa0051930:CDS 20.0%
!! ACATGATATAAAAAGTGAAA+AGG - chr1_2:6113978-6113997 None:intergenic 20.0%
!! AACAAGATTATTGTAAAGAT+AGG + chr1_2:6114336-6114355 Msa0051930:CDS 20.0%
! TACAAAAAGAGTTATCTGAA+TGG + chr1_2:6113474-6113493 Msa0051930:CDS 25.0%
!! AAAACTGATATTGGATTTTC+TGG + chr1_2:6113509-6113528 Msa0051930:CDS 25.0%
!!! TGGAGATTTGATTTTGTTAA+AGG + chr1_2:6113533-6113552 Msa0051930:CDS 25.0%
!!! CATTTGATTTTACTACCAAA+GGG + chr1_2:6113729-6113748 Msa0051930:CDS 25.0%
! ATTGGTATAAAACCAGAAAA+TGG + chr1_2:6113821-6113840 Msa0051930:CDS 25.0%
!! ATAAATGTTACACCATTTTC+TGG - chr1_2:6113836-6113855 None:intergenic 25.0%
!! TTTGAGCATTGTATAAAAGA+CGG + chr1_2:6114001-6114020 Msa0051930:intron 25.0%
! TGAGTGCTATAAATACTATT+TGG + chr1_2:6114439-6114458 Msa0051930:CDS 25.0%
!!! CAAGATTCTTTGTTTTTTTG+GGG - chr1_2:6114507-6114526 None:intergenic 25.0%
!!! GCAAGATTCTTTGTTTTTTT+GGG - chr1_2:6114508-6114527 None:intergenic 25.0%
!!! TGCAAGATTCTTTGTTTTTT+TGG - chr1_2:6114509-6114528 None:intergenic 25.0%
! TAACAGTGAATGTTATATTC+TGG - chr1_2:6114542-6114561 None:intergenic 25.0%
! TACAAAAAGAGTTATCTGAA+TGG + chr1_2:6113474-6113493 Msa0051930:CDS 25.0%
!! AAAACTGATATTGGATTTTC+TGG + chr1_2:6113509-6113528 Msa0051930:CDS 25.0%
!!! TGGAGATTTGATTTTGTTAA+AGG + chr1_2:6113533-6113552 Msa0051930:CDS 25.0%
!!! CATTTGATTTTACTACCAAA+GGG + chr1_2:6113729-6113748 Msa0051930:CDS 25.0%
! ATTGGTATAAAACCAGAAAA+TGG + chr1_2:6113821-6113840 Msa0051930:CDS 25.0%
!! ATAAATGTTACACCATTTTC+TGG - chr1_2:6113836-6113855 None:intergenic 25.0%
!! TTTGAGCATTGTATAAAAGA+CGG + chr1_2:6114001-6114020 Msa0051930:intron 25.0%
! TGAGTGCTATAAATACTATT+TGG + chr1_2:6114439-6114458 Msa0051930:CDS 25.0%
!!! CAAGATTCTTTGTTTTTTTG+GGG - chr1_2:6114507-6114526 None:intergenic 25.0%
!!! GCAAGATTCTTTGTTTTTTT+GGG - chr1_2:6114508-6114527 None:intergenic 25.0%
!!! TGCAAGATTCTTTGTTTTTT+TGG - chr1_2:6114509-6114528 None:intergenic 25.0%
! TAACAGTGAATGTTATATTC+TGG - chr1_2:6114542-6114561 None:intergenic 25.0%
GATCTAGATGCATCAAAATA+TGG + chr1_2:6113179-6113198 Msa0051930:CDS 30.0%
TCCTGATTCAAAACTTGATT+GGG + chr1_2:6113340-6113359 Msa0051930:CDS 30.0%
TCATCTTTGCAAATGAAAGA+TGG - chr1_2:6113368-6113387 None:intergenic 30.0%
! GATAACTCTTTTTGTACTTG+AGG - chr1_2:6113470-6113489 None:intergenic 30.0%
AGTTATCTGAATGGATGAAT+TGG + chr1_2:6113483-6113502 Msa0051930:CDS 30.0%
! AATTGGCTCAAAACTGATAT+TGG + chr1_2:6113500-6113519 Msa0051930:CDS 30.0%
TATTGGAATTCGCTTTCTTA+CGG + chr1_2:6113620-6113639 Msa0051930:CDS 30.0%
!! TAGAGGTGAACTTGTTAATT+GGG + chr1_2:6113679-6113698 Msa0051930:CDS 30.0%
!! CTTGTTAATTGGGTTGAAAA+TGG + chr1_2:6113689-6113708 Msa0051930:CDS 30.0%
!! GCATTTGATTTTACTACCAA+AGG + chr1_2:6113728-6113747 Msa0051930:CDS 30.0%
ATGACTTTATCAGAAGGAAA+TGG - chr1_2:6113896-6113915 None:intergenic 30.0%
!! GTTAGAGAAAGTACTATTGA+TGG - chr1_2:6113956-6113975 None:intergenic 30.0%
GATCTAGATGCATCAAAATA+TGG + chr1_2:6113179-6113198 Msa0051930:CDS 30.0%
TCCTGATTCAAAACTTGATT+GGG + chr1_2:6113340-6113359 Msa0051930:CDS 30.0%
TCATCTTTGCAAATGAAAGA+TGG - chr1_2:6113368-6113387 None:intergenic 30.0%
! GATAACTCTTTTTGTACTTG+AGG - chr1_2:6113470-6113489 None:intergenic 30.0%
AGTTATCTGAATGGATGAAT+TGG + chr1_2:6113483-6113502 Msa0051930:CDS 30.0%
! AATTGGCTCAAAACTGATAT+TGG + chr1_2:6113500-6113519 Msa0051930:CDS 30.0%
TATTGGAATTCGCTTTCTTA+CGG + chr1_2:6113620-6113639 Msa0051930:CDS 30.0%
!! TAGAGGTGAACTTGTTAATT+GGG + chr1_2:6113679-6113698 Msa0051930:CDS 30.0%
!! CTTGTTAATTGGGTTGAAAA+TGG + chr1_2:6113689-6113708 Msa0051930:CDS 30.0%
!! GCATTTGATTTTACTACCAA+AGG + chr1_2:6113728-6113747 Msa0051930:CDS 30.0%
ATGACTTTATCAGAAGGAAA+TGG - chr1_2:6113896-6113915 None:intergenic 30.0%
!! GTTAGAGAAAGTACTATTGA+TGG - chr1_2:6113956-6113975 None:intergenic 30.0%
! CTTTTCTTTCTGCTGTTCTA+TGG - chr1_2:6113283-6113302 None:intergenic 35.0%
AGAACAGCAGAAAGAAAAGA+TGG + chr1_2:6113284-6113303 Msa0051930:CDS 35.0%
CAAAGAGGCAATAAATTCCT+CGG - chr1_2:6113310-6113329 None:intergenic 35.0%
GGAATTTATTGCCTCTTTGA+AGG + chr1_2:6113311-6113330 Msa0051930:CDS 35.0%
! ATTTATTGCCTCTTTGAAGG+TGG + chr1_2:6113314-6113333 Msa0051930:CDS 35.0%
! TTTATTGCCTCTTTGAAGGT+GGG + chr1_2:6113315-6113334 Msa0051930:CDS 35.0%
CTCCTGATTCAAAACTTGAT+TGG + chr1_2:6113339-6113358 Msa0051930:CDS 35.0%
CCTGATTCAAAACTTGATTG+GGG + chr1_2:6113341-6113360 Msa0051930:CDS 35.0%
! CTGATATTGGATTTTCTGGA+TGG + chr1_2:6113513-6113532 Msa0051930:CDS 35.0%
TATAATCAAGATGCAGCTAG+AGG + chr1_2:6113662-6113681 Msa0051930:CDS 35.0%
!! CTAGAGGTGAACTTGTTAAT+TGG + chr1_2:6113678-6113697 Msa0051930:CDS 35.0%
!! GTTAATTGGGTTGAAAATGG+TGG + chr1_2:6113692-6113711 Msa0051930:CDS 35.0%
TGGAGGTTGAAAGATTCAAA+TGG + chr1_2:6113782-6113801 Msa0051930:CDS 35.0%
TTTATACCAATCAAACCAGG+TGG - chr1_2:6113812-6113831 None:intergenic 35.0%
!! GGTTTTATACCAATCAAACC+AGG - chr1_2:6113815-6113834 None:intergenic 35.0%
CTTACATTCTAACACATCCA+GGG + chr1_2:6113927-6113946 Msa0051930:CDS 35.0%
TCTATGACCACTTCTTTGAT+TGG + chr1_2:6114196-6114215 Msa0051930:CDS 35.0%
CTATGACCACTTCTTTGATT+GGG + chr1_2:6114197-6114216 Msa0051930:CDS 35.0%
TATGACCACTTCTTTGATTG+GGG + chr1_2:6114198-6114217 Msa0051930:CDS 35.0%
AATTGAGTGCAATTAGACAG+AGG + chr1_2:6114241-6114260 Msa0051930:CDS 35.0%
TGTAAAGATAGGACCAAAGA+TGG + chr1_2:6114347-6114366 Msa0051930:CDS 35.0%
TTGAGGGAATAAGATTTCCA+AGG - chr1_2:6114374-6114393 None:intergenic 35.0%
GTAGCAACATGGAAATTTGA+GGG - chr1_2:6114390-6114409 None:intergenic 35.0%
TGTAGCAACATGGAAATTTG+AGG - chr1_2:6114391-6114410 None:intergenic 35.0%
AATTTCCATGTTGCTACATC+TGG + chr1_2:6114393-6114412 Msa0051930:CDS 35.0%
! CTTTTCTTTCTGCTGTTCTA+TGG - chr1_2:6113283-6113302 None:intergenic 35.0%
AGAACAGCAGAAAGAAAAGA+TGG + chr1_2:6113284-6113303 Msa0051930:CDS 35.0%
CAAAGAGGCAATAAATTCCT+CGG - chr1_2:6113310-6113329 None:intergenic 35.0%
GGAATTTATTGCCTCTTTGA+AGG + chr1_2:6113311-6113330 Msa0051930:CDS 35.0%
! ATTTATTGCCTCTTTGAAGG+TGG + chr1_2:6113314-6113333 Msa0051930:CDS 35.0%
! TTTATTGCCTCTTTGAAGGT+GGG + chr1_2:6113315-6113334 Msa0051930:CDS 35.0%
CTCCTGATTCAAAACTTGAT+TGG + chr1_2:6113339-6113358 Msa0051930:CDS 35.0%
CCTGATTCAAAACTTGATTG+GGG + chr1_2:6113341-6113360 Msa0051930:CDS 35.0%
! CTGATATTGGATTTTCTGGA+TGG + chr1_2:6113513-6113532 Msa0051930:CDS 35.0%
TATAATCAAGATGCAGCTAG+AGG + chr1_2:6113662-6113681 Msa0051930:CDS 35.0%
!! CTAGAGGTGAACTTGTTAAT+TGG + chr1_2:6113678-6113697 Msa0051930:CDS 35.0%
!! GTTAATTGGGTTGAAAATGG+TGG + chr1_2:6113692-6113711 Msa0051930:CDS 35.0%
TGGAGGTTGAAAGATTCAAA+TGG + chr1_2:6113782-6113801 Msa0051930:CDS 35.0%
TTTATACCAATCAAACCAGG+TGG - chr1_2:6113812-6113831 None:intergenic 35.0%
!! GGTTTTATACCAATCAAACC+AGG - chr1_2:6113815-6113834 None:intergenic 35.0%
CTTACATTCTAACACATCCA+GGG + chr1_2:6113927-6113946 Msa0051930:CDS 35.0%
TCTATGACCACTTCTTTGAT+TGG + chr1_2:6114196-6114215 Msa0051930:CDS 35.0%
CTATGACCACTTCTTTGATT+GGG + chr1_2:6114197-6114216 Msa0051930:CDS 35.0%
TATGACCACTTCTTTGATTG+GGG + chr1_2:6114198-6114217 Msa0051930:CDS 35.0%
AATTGAGTGCAATTAGACAG+AGG + chr1_2:6114241-6114260 Msa0051930:CDS 35.0%
TGTAAAGATAGGACCAAAGA+TGG + chr1_2:6114347-6114366 Msa0051930:CDS 35.0%
TTGAGGGAATAAGATTTCCA+AGG - chr1_2:6114374-6114393 None:intergenic 35.0%
GTAGCAACATGGAAATTTGA+GGG - chr1_2:6114390-6114409 None:intergenic 35.0%
TGTAGCAACATGGAAATTTG+AGG - chr1_2:6114391-6114410 None:intergenic 35.0%
AATTTCCATGTTGCTACATC+TGG + chr1_2:6114393-6114412 Msa0051930:CDS 35.0%
TCTAGATCATACAGTCTTCC+CGG - chr1_2:6113167-6113186 None:intergenic 40.0%
!!! CCCCAATCAAGTTTTGAATC+AGG - chr1_2:6113344-6113363 None:intergenic 40.0%
GATGACACTGCTTATTCTGA+TGG + chr1_2:6113383-6113402 Msa0051930:CDS 40.0%
GGATTGAGATGATCAATGTC+AGG - chr1_2:6113449-6113468 None:intergenic 40.0%
! ACTTCACCAGATTTTGCAGT+CGG + chr1_2:6113593-6113612 Msa0051930:CDS 40.0%
!! ATTTTGCAGTCGGAGAGTAT+TGG + chr1_2:6113603-6113622 Msa0051930:CDS 40.0%
!! AATTGGGTTGAAAATGGTGG+CGG + chr1_2:6113695-6113714 Msa0051930:CDS 40.0%
ATTCTTCAAGCTGCTGTACA+AGG + chr1_2:6113752-6113771 Msa0051930:CDS 40.0%
GATTCAAATGGAAAACCACC+TGG + chr1_2:6113794-6113813 Msa0051930:CDS 40.0%
CAGGTTCAACTCAGAAACTT+TGG + chr1_2:6113870-6113889 Msa0051930:CDS 40.0%
TCCTTCTGATAAAGTCATGC+AGG + chr1_2:6113898-6113917 Msa0051930:CDS 40.0%
CCTTCTGATAAAGTCATGCA+GGG + chr1_2:6113899-6113918 Msa0051930:CDS 40.0%
GCTTACATTCTAACACATCC+AGG + chr1_2:6113926-6113945 Msa0051930:CDS 40.0%
ATAGTCAAATAGTGACTGCG+CGG + chr1_2:6114037-6114056 Msa0051930:intron 40.0%
AGTGCAATTAGACAGAGGAA+TGG + chr1_2:6114246-6114265 Msa0051930:CDS 40.0%
GTGCAATTAGACAGAGGAAT+GGG + chr1_2:6114247-6114266 Msa0051930:CDS 40.0%
AGATTTCCAAGGTCCATCTT+TGG - chr1_2:6114363-6114382 None:intergenic 40.0%
TCTAGATCATACAGTCTTCC+CGG - chr1_2:6113167-6113186 None:intergenic 40.0%
!!! CCCCAATCAAGTTTTGAATC+AGG - chr1_2:6113344-6113363 None:intergenic 40.0%
GATGACACTGCTTATTCTGA+TGG + chr1_2:6113383-6113402 Msa0051930:CDS 40.0%
GGATTGAGATGATCAATGTC+AGG - chr1_2:6113449-6113468 None:intergenic 40.0%
! ACTTCACCAGATTTTGCAGT+CGG + chr1_2:6113593-6113612 Msa0051930:CDS 40.0%
!! ATTTTGCAGTCGGAGAGTAT+TGG + chr1_2:6113603-6113622 Msa0051930:CDS 40.0%
!! AATTGGGTTGAAAATGGTGG+CGG + chr1_2:6113695-6113714 Msa0051930:CDS 40.0%
ATTCTTCAAGCTGCTGTACA+AGG + chr1_2:6113752-6113771 Msa0051930:CDS 40.0%
GATTCAAATGGAAAACCACC+TGG + chr1_2:6113794-6113813 Msa0051930:CDS 40.0%
CAGGTTCAACTCAGAAACTT+TGG + chr1_2:6113870-6113889 Msa0051930:CDS 40.0%
TCCTTCTGATAAAGTCATGC+AGG + chr1_2:6113898-6113917 Msa0051930:CDS 40.0%
CCTTCTGATAAAGTCATGCA+GGG + chr1_2:6113899-6113918 Msa0051930:CDS 40.0%
GCTTACATTCTAACACATCC+AGG + chr1_2:6113926-6113945 Msa0051930:CDS 40.0%
ATAGTCAAATAGTGACTGCG+CGG + chr1_2:6114037-6114056 Msa0051930:intron 40.0%
AGTGCAATTAGACAGAGGAA+TGG + chr1_2:6114246-6114265 Msa0051930:CDS 40.0%
GTGCAATTAGACAGAGGAAT+GGG + chr1_2:6114247-6114266 Msa0051930:CDS 40.0%
AGATTTCCAAGGTCCATCTT+TGG - chr1_2:6114363-6114382 None:intergenic 40.0%
ACTGCTTATTCTGATGGCAC+CGG + chr1_2:6113389-6113408 Msa0051930:CDS 45.0%
TACTCTCCGACTGCAAAATC+TGG - chr1_2:6113602-6113621 None:intergenic 45.0%
TCGCTTTCTTACGGACAAGA+TGG + chr1_2:6113629-6113648 Msa0051930:CDS 45.0%
AGCAGCTTGAAGAATCCCTT+TGG - chr1_2:6113747-6113766 None:intergenic 45.0%
CTGCTGTACAAGGAGAACTT+TGG + chr1_2:6113762-6113781 Msa0051930:CDS 45.0%
CTGTACAAGGAGAACTTTGG+AGG + chr1_2:6113765-6113784 Msa0051930:CDS 45.0%
! GGAAAACCACCTGGTTTGAT+TGG + chr1_2:6113803-6113822 Msa0051930:CDS 45.0%
CCCTGCATGACTTTATCAGA+AGG - chr1_2:6113902-6113921 None:intergenic 45.0%
AGTACTATTGATGGAGTCCC+TGG - chr1_2:6113947-6113966 None:intergenic 45.0%
TAGTCAAATAGTGACTGCGC+GGG + chr1_2:6114038-6114057 Msa0051930:intron 45.0%
TCAGTCCCCAATCAAAGAAG+TGG - chr1_2:6114206-6114225 None:intergenic 45.0%
CTTCTTTGATTGGGGACTGA+AGG + chr1_2:6114206-6114225 Msa0051930:CDS 45.0%
ATAGGACCAAAGATGGACCT+TGG + chr1_2:6114354-6114373 Msa0051930:CDS 45.0%
CTTGTCCAGATGTAGCAACA+TGG - chr1_2:6114401-6114420 None:intergenic 45.0%
TGGACAAGACTATGCTGTGT+GGG + chr1_2:6114413-6114432 Msa0051930:CDS 45.0%
ACTGCTTATTCTGATGGCAC+CGG + chr1_2:6113389-6113408 Msa0051930:CDS 45.0%
TACTCTCCGACTGCAAAATC+TGG - chr1_2:6113602-6113621 None:intergenic 45.0%
TCGCTTTCTTACGGACAAGA+TGG + chr1_2:6113629-6113648 Msa0051930:CDS 45.0%
AGCAGCTTGAAGAATCCCTT+TGG - chr1_2:6113747-6113766 None:intergenic 45.0%
CTGCTGTACAAGGAGAACTT+TGG + chr1_2:6113762-6113781 Msa0051930:CDS 45.0%
CTGTACAAGGAGAACTTTGG+AGG + chr1_2:6113765-6113784 Msa0051930:CDS 45.0%
! GGAAAACCACCTGGTTTGAT+TGG + chr1_2:6113803-6113822 Msa0051930:CDS 45.0%
CCCTGCATGACTTTATCAGA+AGG - chr1_2:6113902-6113921 None:intergenic 45.0%
AGTACTATTGATGGAGTCCC+TGG - chr1_2:6113947-6113966 None:intergenic 45.0%
TAGTCAAATAGTGACTGCGC+GGG + chr1_2:6114038-6114057 Msa0051930:intron 45.0%
TCAGTCCCCAATCAAAGAAG+TGG - chr1_2:6114206-6114225 None:intergenic 45.0%
CTTCTTTGATTGGGGACTGA+AGG + chr1_2:6114206-6114225 Msa0051930:CDS 45.0%
ATAGGACCAAAGATGGACCT+TGG + chr1_2:6114354-6114373 Msa0051930:CDS 45.0%
CTTGTCCAGATGTAGCAACA+TGG - chr1_2:6114401-6114420 None:intergenic 45.0%
TGGACAAGACTATGCTGTGT+GGG + chr1_2:6114413-6114432 Msa0051930:CDS 45.0%
AGTCTTCCCGGAAGATATCC+TGG - chr1_2:6113155-6113174 None:intergenic 50.0%
GCAGAAAGAAAAGATGGCCG+AGG + chr1_2:6113290-6113309 Msa0051930:CDS 50.0%
CTGCTTATTCTGATGGCACC+GGG + chr1_2:6113390-6113409 Msa0051930:CDS 50.0%
CTCTCCACTATCAAGGTTCC+CGG - chr1_2:6113411-6113430 None:intergenic 50.0%
!! GGGAACCTTGATAGTGGAGA+GGG + chr1_2:6113410-6113429 Msa0051930:CDS 50.0%
CATAGCCCTCTCCACTATCA+AGG - chr1_2:6113418-6113437 None:intergenic 50.0%
CTGGACAAGACTATGCTGTG+TGG + chr1_2:6114412-6114431 Msa0051930:CDS 50.0%
AGTCTTCCCGGAAGATATCC+TGG - chr1_2:6113155-6113174 None:intergenic 50.0%
GCAGAAAGAAAAGATGGCCG+AGG + chr1_2:6113290-6113309 Msa0051930:CDS 50.0%
CTGCTTATTCTGATGGCACC+GGG + chr1_2:6113390-6113409 Msa0051930:CDS 50.0%
CTCTCCACTATCAAGGTTCC+CGG - chr1_2:6113411-6113430 None:intergenic 50.0%
!! GGGAACCTTGATAGTGGAGA+GGG + chr1_2:6113410-6113429 Msa0051930:CDS 50.0%
CATAGCCCTCTCCACTATCA+AGG - chr1_2:6113418-6113437 None:intergenic 50.0%
CTGGACAAGACTATGCTGTG+TGG + chr1_2:6114412-6114431 Msa0051930:CDS 50.0%
CAGGAGTCCCACCTTCAAAG+AGG - chr1_2:6113325-6113344 None:intergenic 55.0%
!! CGGGAACCTTGATAGTGGAG+AGG + chr1_2:6113409-6113428 Msa0051930:CDS 55.0%
CAGGAGTCCCACCTTCAAAG+AGG - chr1_2:6113325-6113344 None:intergenic 55.0%
!! CGGGAACCTTGATAGTGGAG+AGG + chr1_2:6113409-6113428 Msa0051930:CDS 55.0%
! GGCACCGGGAACCTTGATAG+TGG + chr1_2:6113404-6113423 Msa0051930:CDS 60.0%
! GGCACCGGGAACCTTGATAG+TGG + chr1_2:6113404-6113423 Msa0051930:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6113152 6114579 6113152 ID=Msa0051930;Name=Msa0051930
chr1_2 mRNA 6113152 6114579 6113152 ID=Msa0051930-mRNA-1;Parent=Msa0051930;Name=Msa0051930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|106|362
chr1_2 exon 6113152 6113961 6113152 ID=Msa0051930-mRNA-1:exon:1960;Parent=Msa0051930-mRNA-1
chr1_2 exon 6114195 6114579 6114195 ID=Msa0051930-mRNA-1:exon:1961;Parent=Msa0051930-mRNA-1
chr1_2 CDS 6113152 6113961 6113152 ID=Msa0051930-mRNA-1:cds;Parent=Msa0051930-mRNA-1
chr1_2 CDS 6114195 6114473 6114195 ID=Msa0051930-mRNA-1:cds;Parent=Msa0051930-mRNA-1
chr1_2 three_prime_UTR 6114474 6114579 6114474 ID=Msa0051930-mRNA-1:three_prime_utr;Parent=Msa0051930-mRNA-1
Gene Sequence

>Msa0051930

CCAGGATATCTTCCGGGAAGACTGTATGATCTAGATGCATCAAAATATGGTTCAAAAGATGAACTAAAGTCACTAATTGCAGCTTTCAAAGATAAAAGAATCAATTGTCTAGCAGACATAGTGATCAACCATAGAACAGCAGAAAGAAAAGATGGCCGAGGAATTTATTGCCTCTTTGAAGGTGGGACTCCTGATTCAAAACTTGATTGGGGTCCATCTTTCATTTGCAAAGATGACACTGCTTATTCTGATGGCACCGGGAACCTTGATAGTGGAGAGGGCTATGAAGCTGCACCTGACATTGATCATCTCAATCCTCAAGTACAAAAAGAGTTATCTGAATGGATGAATTGGCTCAAAACTGATATTGGATTTTCTGGATGGAGATTTGATTTTGTTAAAGGTTATGCTCCTAGAATAACCAAAATTTATATGGAAAACACTTCACCAGATTTTGCAGTCGGAGAGTATTGGAATTCGCTTTCTTACGGACAAGATGGAAAACTCAACTATAATCAAGATGCAGCTAGAGGTGAACTTGTTAATTGGGTTGAAAATGGTGGCGGTGTTGTTAATGCATTTGATTTTACTACCAAAGGGATTCTTCAAGCTGCTGTACAAGGAGAACTTTGGAGGTTGAAAGATTCAAATGGAAAACCACCTGGTTTGATTGGTATAAAACCAGAAAATGGTGTAACATTTATTGATAATCATGATACAGGTTCAACTCAGAAACTTTGGCCATTTCCTTCTGATAAAGTCATGCAGGGTTATGCTTACATTCTAACACATCCAGGGACTCCATCAATATTCTATGACCACTTCTTTGATTGGGGACTGAAGGATCAGATAGCAAAATTGAGTGCAATTAGACAGAGGAATGGGATCAACATGAAAAGCACAGTGAACATTCTAGCAGCTGAAGCTGACATGTATGTAGCAAAAATAGACAACAAGATTATTGTAAAGATAGGACCAAAGATGGACCTTGGAAATCTTATTCCCTCAAATTTCCATGTTGCTACATCTGGACAAGACTATGCTGTGTGGGAATTGAGTGCTATAAATACTATTTGGTGTTCATCATAA

Protein sequence

>Msa0051930

PGYLPGRLYDLDASKYGSKDELKSLIAAFKDKRINCLADIVINHRTAERKDGRGIYCLFEGGTPDSKLDWGPSFICKDDTAYSDGTGNLDSGEGYEAAPDIDHLNPQVQKELSEWMNWLKTDIGFSGWRFDFVKGYAPRITKIYMENTSPDFAVGEYWNSLSYGQDGKLNYNQDAARGELVNWVENGGGVVNAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGIKPENGVTFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKDQIAKLSAIRQRNGINMKSTVNILAAEADMYVAKIDNKIIVKIGPKMDLGNLIPSNFHVATSGQDYAVWELSAINTIWCSS*