Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026650 | sp|P17859|AMYA_VIGMU | 85.036 | 421 | 63 | 0 | 1 | 421 | 1 | 421 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026650 | Msa0051930 | 0.935064 | 1.525758e-96 | -8.615850e-47 |
| Msa0026650 | Msa0052030 | 0.817549 | 3.113434e-52 | -8.615850e-47 |
| Msa0026650 | Msa0105700 | 0.802980 | 4.336792e-49 | -8.615850e-47 |
| Msa0026650 | Msa0145140 | 0.960643 | 8.634834e-119 | -8.615850e-47 |
| Msa0026650 | Msa0145230 | 0.843265 | 1.558296e-58 | -8.615850e-47 |
| Msa0026650 | Msa0187220 | 0.810910 | 9.111156e-51 | -8.615850e-47 |
| Msa0026650 | Msa0388840 | 0.810435 | 1.154389e-50 | -8.615850e-47 |
| Msa0026650 | Msa0878880 | 0.801890 | 7.273469e-49 | -8.615850e-47 |
| Msa0026650 | Msa1307740 | 0.803670 | 3.120391e-49 | -8.615850e-47 |
| Msa0026650 | Msa1462060 | 0.806496 | 7.997945e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026650 | MtrunA17_Chr1g0153391 | 96.200 | 421 | 16 | 0 | 1 | 421 | 1 | 421 | 0.0 | 839 |
| Msa0026650 | MtrunA17_Chr1g0157251 | 46.437 | 407 | 199 | 8 | 19 | 421 | 40 | 431 | 1.98e-126 | 372 |
| Msa0026650 | MtrunA17_Chr7g0218861 | 48.130 | 401 | 193 | 7 | 25 | 420 | 569 | 959 | 7.66e-126 | 387 |
| Msa0026650 | MtrunA17_Chr8g0362571 | 48.371 | 399 | 196 | 6 | 25 | 422 | 521 | 910 | 9.75e-124 | 380 |
| Msa0026650 | MtrunA17_Chr1g0153421 | 69.820 | 222 | 66 | 1 | 202 | 423 | 1 | 221 | 6.97e-109 | 320 |
| Msa0026650 | MtrunA17_Chr1g0153411 | 61.000 | 200 | 73 | 4 | 1 | 197 | 1 | 198 | 5.58e-76 | 235 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026650 | AT4G25000.1 | 66.981 | 424 | 131 | 6 | 1 | 421 | 4 | 421 | 0.0 | 575 |
| Msa0026650 | AT1G76130.2 | 46.135 | 401 | 197 | 8 | 25 | 421 | 27 | 412 | 2.74e-124 | 367 |
| Msa0026650 | AT1G76130.1 | 46.135 | 401 | 197 | 8 | 25 | 421 | 27 | 412 | 2.74e-124 | 367 |
| Msa0026650 | AT1G69830.1 | 47.772 | 404 | 193 | 8 | 25 | 423 | 497 | 887 | 3.90e-121 | 373 |
Find 91 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTGCTTTGCTCTTTC+AGG | 0.071382 | 1_1:-50550645 | Msa0026650:intron |
| CTAGAGGTGAACTTGTTAAT+TGG | 0.215478 | 1_1:-50549058 | Msa0026650:CDS |
| AATTGGCTCAAAACTGATAT+TGG | 0.241670 | 1_1:-50549236 | Msa0026650:CDS |
| AAGCAATGGATTCTCTTCTT+TGG | 0.263300 | 1_1:-50550712 | None:intergenic |
| ATTGGTATAAAACCAGAAAA+TGG | 0.275218 | 1_1:-50548915 | Msa0026650:CDS |
| TAGAATAACCAAAATTTATA+TGG | 0.276397 | 1_1:-50549171 | Msa0026650:CDS |
| TCTATGACCACTACTTTGAT+TGG | 0.302191 | 1_1:-50548540 | Msa0026650:CDS |
| TGAGTGCTATAAATACTATT+TGG | 0.303705 | 1_1:-50548297 | Msa0026650:CDS |
| TCCTGATTCAAAACTTGATT+GGG | 0.305041 | 1_1:-50549396 | Msa0026650:CDS |
| TAACAGTGAATGTTATATTC+TGG | 0.324353 | 1_1:+50548197 | None:intergenic |
| CTCCTGATTCAAAACTTGAT+TGG | 0.329202 | 1_1:-50549397 | Msa0026650:CDS |
| AGATTTCCAAGGTCCATCTT+TGG | 0.347454 | 1_1:+50548376 | None:intergenic |
| GGAAAACCACCTGGTTTGAT+TGG | 0.356913 | 1_1:-50548933 | Msa0026650:CDS |
| GATCTAGATGCATCAAAATA+TGG | 0.359589 | 1_1:-50549557 | Msa0026650:CDS |
| CTTGTTAATTGGGTTGAAAA+TGG | 0.363355 | 1_1:-50549047 | Msa0026650:CDS |
| AATTTCCATGTTGCTACATC+TGG | 0.363952 | 1_1:-50548343 | Msa0026650:CDS |
| TAGAGGTGAACTTGTTAATT+GGG | 0.373990 | 1_1:-50549057 | Msa0026650:CDS |
| CTATGACCACTACTTTGATT+GGG | 0.375320 | 1_1:-50548539 | Msa0026650:CDS |
| TTTATTGATAATCATGATAC+AGG | 0.381056 | 1_1:-50548885 | Msa0026650:CDS |
| GGAATTTATTGCCTCTTTGA+AGG | 0.394854 | 1_1:-50549425 | Msa0026650:CDS |
| AGTTATCTGAATGGATGAAT+TGG | 0.402706 | 1_1:-50549253 | Msa0026650:CDS |
| TACTCTCCGACTGCAAAATC+TGG | 0.406961 | 1_1:+50549137 | None:intergenic |
| ATGCTGGAATTACACATGTT+TGG | 0.408607 | 1_1:-50550453 | Msa0026650:CDS |
| GTTAGAGAAAGTACTATTGA+TGG | 0.413060 | 1_1:+50548783 | None:intergenic |
| CTCTCCACTATCAAGGTTCC+CGG | 0.421392 | 1_1:+50549328 | None:intergenic |
| TCTAGATCATACAGTCTTCC+CGG | 0.429494 | 1_1:+50549572 | None:intergenic |
| TTTAATCCAGGATATCTTCC+GGG | 0.436223 | 1_1:-50549590 | Msa0026650:intron |
| AGTACTATTGATGGAGTCCC+TGG | 0.447084 | 1_1:+50548792 | None:intergenic |
| ATTCCAGCATTTGCTAGGTC+AGG | 0.449113 | 1_1:+50550466 | None:intergenic |
| TATTGGAATTCGCTTTCTTA+CGG | 0.453954 | 1_1:-50549116 | Msa0026650:CDS |
| CAGGTTCAACTCAGAAACTT+TGG | 0.458721 | 1_1:-50548866 | Msa0026650:CDS |
| TCCTTCTGATAAAGTCATGC+AGG | 0.462173 | 1_1:-50548838 | Msa0026650:CDS |
| TCGCTTTCTTACGGACAAGA+TGG | 0.467894 | 1_1:-50549107 | Msa0026650:CDS |
| AACAAGATTATTGTAAAGAT+AGG | 0.470619 | 1_1:-50548400 | Msa0026650:CDS |
| ATGACTTTATCAGAAGGAAA+TGG | 0.486625 | 1_1:+50548843 | None:intergenic |
| TGGAGGTTGAAAGATTCAAA+TGG | 0.490377 | 1_1:-50548954 | Msa0026650:CDS |
| AGCAGCTTGAAGAATCCCTT+TGG | 0.493729 | 1_1:+50548992 | None:intergenic |
| TGTAAAGATAGGACCAAAGA+TGG | 0.501815 | 1_1:-50548389 | Msa0026650:CDS |
| GTGTAATTCCAGCATTTGCT+AGG | 0.503775 | 1_1:+50550461 | None:intergenic |
| GTGCAATTAGACAGAGGAAT+GGG | 0.509731 | 1_1:-50548489 | Msa0026650:CDS |
| GCTTACATTCTAACACATCC+AGG | 0.510803 | 1_1:-50548810 | Msa0026650:CDS |
| CTGTACAAGGAGAACTTTGG+AGG | 0.514098 | 1_1:-50548971 | Msa0026650:CDS |
| CCTCCTCCATCTCAAAGTGT+TGG | 0.516703 | 1_1:-50550427 | Msa0026650:CDS |
| TCATCTTTGCAAATGAAAGA+TGG | 0.518192 | 1_1:+50549371 | None:intergenic |
| TGTAGCAACATGGAAATTTG+AGG | 0.519009 | 1_1:+50548348 | None:intergenic |
| ATTCTTCAAGCTGCTGTACA+AGG | 0.520893 | 1_1:-50548984 | Msa0026650:CDS |
| TCTCAAAGTGTTGGCCCTCA+AGG | 0.524248 | 1_1:-50550418 | Msa0026650:intron |
| CATAGCCCTCTCCACTATCA+AGG | 0.524533 | 1_1:+50549321 | None:intergenic |
| ATTCCTGACCTAGCAAATGC+TGG | 0.524700 | 1_1:-50550469 | Msa0026650:CDS |
| CTACTTTGATTGGGGACTGA+AGG | 0.526861 | 1_1:-50548530 | Msa0026650:CDS |
| AAAGCAGAAGAAGCTAAAAG+AGG | 0.530488 | 1_1:+50550656 | None:intergenic |
| TATGACCACTACTTTGATTG+GGG | 0.532595 | 1_1:-50548538 | Msa0026650:CDS |
| GGCACCGGGAACCTTGATAG+TGG | 0.534257 | 1_1:-50549332 | Msa0026650:CDS |
| TTTATTGCCTCTTTGAAGGT+GGG | 0.537291 | 1_1:-50549421 | Msa0026650:CDS |
| ACTGCTTATTCTGATGGCAC+CGG | 0.544916 | 1_1:-50549347 | Msa0026650:CDS |
| CAAAGAGGCAATAAATTCCT+CGG | 0.550411 | 1_1:+50549429 | None:intergenic |
| ATAGGACCAAAGATGGACCT+TGG | 0.553570 | 1_1:-50548382 | Msa0026650:CDS |
| CTGCTGTACAAGGAGAACTT+TGG | 0.555296 | 1_1:-50548974 | Msa0026650:CDS |
| CTGCTTATTCTGATGGCACC+GGG | 0.555830 | 1_1:-50549346 | Msa0026650:CDS |
| GTAGCAACATGGAAATTTGA+GGG | 0.557475 | 1_1:+50548349 | None:intergenic |
| ATTTATTGCCTCTTTGAAGG+TGG | 0.559530 | 1_1:-50549422 | Msa0026650:CDS |
| AGAACAGCAGAAAGAAAAGA+TGG | 0.561548 | 1_1:-50549452 | Msa0026650:CDS |
| CCTTCTGATAAAGTCATGCA+GGG | 0.563584 | 1_1:-50548837 | Msa0026650:CDS |
| TTGAGGGAATAAGATTTCCA+AGG | 0.564275 | 1_1:+50548365 | None:intergenic |
| TGAGGGCCAACACTTTGAGA+TGG | 0.573353 | 1_1:+50550421 | None:intergenic |
| GATGACACTGCTTATTCTGA+TGG | 0.586526 | 1_1:-50549353 | Msa0026650:CDS |
| TGGACAAGACTATGCTGTGT+GGG | 0.591009 | 1_1:-50548323 | Msa0026650:CDS |
| AATTGGGTTGAAAATGGTGG+CGG | 0.595388 | 1_1:-50549041 | Msa0026650:CDS |
| GCAGAAAGAAAAGATGGCCG+AGG | 0.596444 | 1_1:-50549446 | Msa0026650:CDS |
| CCAACACTTTGAGATGGAGG+AGG | 0.598534 | 1_1:+50550427 | None:intergenic |
| GGGCCAACACTTTGAGATGG+AGG | 0.600166 | 1_1:+50550424 | None:intergenic |
| CCCTGCATGACTTTATCAGA+AGG | 0.602185 | 1_1:+50548837 | None:intergenic |
| GGATTGAGATGATCAATGTC+AGG | 0.603905 | 1_1:+50549290 | None:intergenic |
| CTTGTCCAGATGTAGCAACA+TGG | 0.607325 | 1_1:+50548338 | None:intergenic |
| AACTGGGAATCAAGTAACAA+AGG | 0.607754 | 1_1:-50550520 | Msa0026650:CDS |
| GATTCAAATGGAAAACCACC+TGG | 0.610843 | 1_1:-50548942 | Msa0026650:CDS |
| GGGAACCTTGATAGTGGAGA+GGG | 0.620769 | 1_1:-50549326 | Msa0026650:CDS |
| AGTGCAATTAGACAGAGGAA+TGG | 0.622780 | 1_1:-50548490 | Msa0026650:CDS |
| CCTGATTCAAAACTTGATTG+GGG | 0.623674 | 1_1:-50549395 | Msa0026650:CDS |
| GTTAATTGGGTTGAAAATGG+TGG | 0.627623 | 1_1:-50549044 | Msa0026650:CDS |
| TCAGTCCCCAATCAAAGTAG+TGG | 0.627706 | 1_1:+50548533 | None:intergenic |
| CTTACATTCTAACACATCCA+GGG | 0.632166 | 1_1:-50548809 | Msa0026650:CDS |
| AATCAAGTAACAAAGGAGGA+TGG | 0.633320 | 1_1:-50550513 | Msa0026650:CDS |
| TATAATCAAGATGCAGCTAG+AGG | 0.641274 | 1_1:-50549074 | Msa0026650:CDS |
| CAGGAGTCCCACCTTCAAAG+AGG | 0.644880 | 1_1:+50549414 | None:intergenic |
| CAACACTTTGAGATGGAGGA+GGG | 0.651277 | 1_1:+50550428 | None:intergenic |
| CGGGAACCTTGATAGTGGAG+AGG | 0.661491 | 1_1:-50549327 | Msa0026650:CDS |
| TGGGAATCAAGTAACAAAGG+AGG | 0.677530 | 1_1:-50550517 | Msa0026650:CDS |
| TTTATACCAATCAAACCAGG+TGG | 0.686102 | 1_1:+50548927 | None:intergenic |
| AATTGAGTGCAATTAGACAG+AGG | 0.688509 | 1_1:-50548495 | Msa0026650:CDS |
| CTGGACAAGACTATGCTGTG+TGG | 0.700165 | 1_1:-50548324 | Msa0026650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATAATTGTTTTTAC+AGG | - | chr1_1:50548338-50548357 | Msa0026650:CDS | 10.0% |
| !!! | ATATAATAATTGTTTTTACA+GGG | - | chr1_1:50548339-50548358 | Msa0026650:CDS | 10.0% |
| !!! | TATATTTCTATTATAGTATT+AGG | + | chr1_1:50548676-50548695 | None:intergenic | 10.0% |
| !! | ACTATAATAGAAATATAAAT+AGG | - | chr1_1:50548679-50548698 | Msa0026650:intron | 10.0% |
| !! | AAGTATGCAAAAAATTATTT+GGG | + | chr1_1:50549063-50549082 | None:intergenic | 15.0% |
| !! | AAAGTATGCAAAAAATTATT+TGG | + | chr1_1:50549064-50549083 | None:intergenic | 15.0% |
| !!! | TTGTTAATTTTTTTTAATCC+AGG | - | chr1_1:50549284-50549303 | Msa0026650:CDS | 15.0% |
| !!! | ATATAAATTTTGGTTATTCT+AGG | + | chr1_1:50549716-50549735 | None:intergenic | 15.0% |
| !! | TAGAATAACCAAAATTTATA+TGG | - | chr1_1:50549715-50549734 | Msa0026650:intron | 15.0% |
| !!! | ATTATATTTTTATGCAGTTA+TGG | - | chr1_1:50550305-50550324 | Msa0026650:intron | 15.0% |
| !! | CACTCATAATGAAATATTAA+TGG | - | chr1_1:50548513-50548532 | Msa0026650:CDS | 20.0% |
| !! | TAATTAGAGAATCATATGTT+TGG | + | chr1_1:50548575-50548594 | None:intergenic | 20.0% |
| !! | AATTGATATGTAATCATGTT+AGG | - | chr1_1:50548605-50548624 | Msa0026650:intron | 20.0% |
| !! | AGCAACATAATAATAGTATT+AGG | - | chr1_1:50548786-50548805 | Msa0026650:intron | 20.0% |
| !!! | TAATAGTATTAGGTTGTTTT+TGG | - | chr1_1:50548796-50548815 | Msa0026650:intron | 20.0% |
| !! | ATTTAAAAACTATCTTGTTG+TGG | - | chr1_1:50549037-50549056 | Msa0026650:CDS | 20.0% |
| !! | TCGTTTAATAAATATAAAGC+TGG | - | chr1_1:50549091-50549110 | Msa0026650:CDS | 20.0% |
| !! | AATAAATATAAAGCTGGATA+TGG | - | chr1_1:50549097-50549116 | Msa0026650:CDS | 20.0% |
| !! | ATAGTTACTAACAAGTAAAT+AGG | - | chr1_1:50549123-50549142 | Msa0026650:CDS | 20.0% |
| !!! | GAATCTTTATTCATTTTAAC+CGG | - | chr1_1:50549236-50549255 | Msa0026650:CDS | 20.0% |
| !!! | AATCTTTATTCATTTTAACC+GGG | - | chr1_1:50549237-50549256 | Msa0026650:CDS | 20.0% |
| !!! | AGTGTTTTCCATATAAATTT+TGG | + | chr1_1:50549726-50549745 | None:intergenic | 20.0% |
| !!! | TTTATTGATAATCATGATAC+AGG | - | chr1_1:50550001-50550020 | Msa0026650:intron | 20.0% |
| !! | ACATGATATAAAAAGTGAAA+AGG | + | chr1_1:50550128-50550147 | None:intergenic | 20.0% |
| !! | AACAAGATTATTGTAAAGAT+AGG | - | chr1_1:50550486-50550505 | Msa0026650:CDS | 20.0% |
| ! | TATACATGCACATTTGATTA+AGG | + | chr1_1:50548317-50548336 | None:intergenic | 25.0% |
| ! | ATCATATGTTTGGAAAATGA+AGG | + | chr1_1:50548565-50548584 | None:intergenic | 25.0% |
| ! | CAAGACTAATGGTTAAATTT+AGG | - | chr1_1:50549153-50549172 | Msa0026650:CDS | 25.0% |
| ! | CAGCTTGTATTTAAATACTA+TGG | + | chr1_1:50549179-50549198 | None:intergenic | 25.0% |
| !!! | AAGCTGTATACATTTTTTAG+AGG | - | chr1_1:50549193-50549212 | Msa0026650:CDS | 25.0% |
| !!! | ATCTTTATTCATTTTAACCG+GGG | - | chr1_1:50549238-50549257 | Msa0026650:CDS | 25.0% |
| ! | TACAAAAAGAGTTATCTGAA+TGG | - | chr1_1:50549624-50549643 | Msa0026650:intron | 25.0% |
| !! | AAAACTGATATTGGATTTTC+TGG | - | chr1_1:50549659-50549678 | Msa0026650:intron | 25.0% |
| !!! | TGGAGATTTGATTTTGTTAA+AGG | - | chr1_1:50549683-50549702 | Msa0026650:intron | 25.0% |
| !!! | CATTTGATTTTACTACCAAA+GGG | - | chr1_1:50549879-50549898 | Msa0026650:intron | 25.0% |
| ! | ATTGGTATAAAACCAGAAAA+TGG | - | chr1_1:50549971-50549990 | Msa0026650:intron | 25.0% |
| !! | ATAAATGTTACACCATTTTC+TGG | + | chr1_1:50549986-50550005 | None:intergenic | 25.0% |
| !! | TTTGAGCATTGTATAAAAGA+CGG | - | chr1_1:50550151-50550170 | Msa0026650:intron | 25.0% |
| ! | TGAGTGCTATAAATACTATT+TGG | - | chr1_1:50550589-50550608 | Msa0026650:intron | 25.0% |
| !!! | CAAGATTCTTTGTTTTTTTG+GGG | + | chr1_1:50550657-50550676 | None:intergenic | 25.0% |
| !!! | GCAAGATTCTTTGTTTTTTT+GGG | + | chr1_1:50550658-50550677 | None:intergenic | 25.0% |
| !!! | TGCAAGATTCTTTGTTTTTT+TGG | + | chr1_1:50550659-50550678 | None:intergenic | 25.0% |
| ! | TAACAGTGAATGTTATATTC+TGG | + | chr1_1:50550692-50550711 | None:intergenic | 25.0% |
| CCAAAAATGTATTACCTTGA+GGG | + | chr1_1:50548485-50548504 | None:intergenic | 30.0% | |
| TCCAAAAATGTATTACCTTG+AGG | + | chr1_1:50548486-50548505 | None:intergenic | 30.0% | |
| TATTTCATTATGAGTGAAGC+AGG | + | chr1_1:50548509-50548528 | None:intergenic | 30.0% | |
| TAGGTACAATTCAAGACTAA+TGG | - | chr1_1:50549142-50549161 | Msa0026650:CDS | 30.0% | |
| !! | TCTTTATTCATTTTAACCGG+GGG | - | chr1_1:50549239-50549258 | Msa0026650:CDS | 30.0% |
| ! | TTTTAATCCAGGATATCTTC+CGG | - | chr1_1:50549295-50549314 | Msa0026650:CDS | 30.0% |
| GATCTAGATGCATCAAAATA+TGG | - | chr1_1:50549329-50549348 | Msa0026650:CDS | 30.0% | |
| TCCTGATTCAAAACTTGATT+GGG | - | chr1_1:50549490-50549509 | Msa0026650:CDS | 30.0% | |
| TCATCTTTGCAAATGAAAGA+TGG | + | chr1_1:50549518-50549537 | None:intergenic | 30.0% | |
| ! | GATAACTCTTTTTGTACTTG+AGG | + | chr1_1:50549620-50549639 | None:intergenic | 30.0% |
| AGTTATCTGAATGGATGAAT+TGG | - | chr1_1:50549633-50549652 | Msa0026650:intron | 30.0% | |
| ! | AATTGGCTCAAAACTGATAT+TGG | - | chr1_1:50549650-50549669 | Msa0026650:intron | 30.0% |
| TATTGGAATTCGCTTTCTTA+CGG | - | chr1_1:50549770-50549789 | Msa0026650:intron | 30.0% | |
| !! | TAGAGGTGAACTTGTTAATT+GGG | - | chr1_1:50549829-50549848 | Msa0026650:intron | 30.0% |
| !! | CTTGTTAATTGGGTTGAAAA+TGG | - | chr1_1:50549839-50549858 | Msa0026650:intron | 30.0% |
| !! | GCATTTGATTTTACTACCAA+AGG | - | chr1_1:50549878-50549897 | Msa0026650:intron | 30.0% |
| ATGACTTTATCAGAAGGAAA+TGG | + | chr1_1:50550046-50550065 | None:intergenic | 30.0% | |
| !! | GTTAGAGAAAGTACTATTGA+TGG | + | chr1_1:50550106-50550125 | None:intergenic | 30.0% |
| GAGGAAAAATAGAAAGACAG+AGG | + | chr1_1:50548214-50548233 | None:intergenic | 35.0% | |
| AAAGCAGAAGAAGCTAAAAG+AGG | + | chr1_1:50548233-50548252 | None:intergenic | 35.0% | |
| !! | TGTTTTTACAGGGATTCAAC+TGG | - | chr1_1:50548349-50548368 | Msa0026650:CDS | 35.0% |
| ! | GTTTTTACAGGGATTCAACT+GGG | - | chr1_1:50548350-50548369 | Msa0026650:CDS | 35.0% |
| AACTGGGAATCAAGTAACAA+AGG | - | chr1_1:50548366-50548385 | Msa0026650:CDS | 35.0% | |
| AATCAAGTAACAAAGGAGGA+TGG | - | chr1_1:50548373-50548392 | Msa0026650:CDS | 35.0% | |
| ATGCTGGAATTACACATGTT+TGG | - | chr1_1:50548433-50548452 | Msa0026650:CDS | 35.0% | |
| ! | CCCTCAAGGTAATACATTTT+TGG | - | chr1_1:50548482-50548501 | Msa0026650:CDS | 35.0% |
| ! | TACATGATCAAAGTTCTAGC+AGG | - | chr1_1:50548755-50548774 | Msa0026650:intron | 35.0% |
| CAGAGAATCACAGTCAAATA+GGG | - | chr1_1:50548842-50548861 | Msa0026650:CDS | 35.0% | |
| TTTAATCCAGGATATCTTCC+GGG | - | chr1_1:50549296-50549315 | Msa0026650:CDS | 35.0% | |
| ! | CTTTTCTTTCTGCTGTTCTA+TGG | + | chr1_1:50549433-50549452 | None:intergenic | 35.0% |
| AGAACAGCAGAAAGAAAAGA+TGG | - | chr1_1:50549434-50549453 | Msa0026650:CDS | 35.0% | |
| CAAAGAGGCAATAAATTCCT+CGG | + | chr1_1:50549460-50549479 | None:intergenic | 35.0% | |
| GGAATTTATTGCCTCTTTGA+AGG | - | chr1_1:50549461-50549480 | Msa0026650:CDS | 35.0% | |
| ! | ATTTATTGCCTCTTTGAAGG+TGG | - | chr1_1:50549464-50549483 | Msa0026650:CDS | 35.0% |
| ! | TTTATTGCCTCTTTGAAGGT+GGG | - | chr1_1:50549465-50549484 | Msa0026650:CDS | 35.0% |
| CTCCTGATTCAAAACTTGAT+TGG | - | chr1_1:50549489-50549508 | Msa0026650:CDS | 35.0% | |
| CCTGATTCAAAACTTGATTG+GGG | - | chr1_1:50549491-50549510 | Msa0026650:CDS | 35.0% | |
| ! | CTGATATTGGATTTTCTGGA+TGG | - | chr1_1:50549663-50549682 | Msa0026650:intron | 35.0% |
| TATAATCAAGATGCAGCTAG+AGG | - | chr1_1:50549812-50549831 | Msa0026650:intron | 35.0% | |
| !! | CTAGAGGTGAACTTGTTAAT+TGG | - | chr1_1:50549828-50549847 | Msa0026650:intron | 35.0% |
| !! | GTTAATTGGGTTGAAAATGG+TGG | - | chr1_1:50549842-50549861 | Msa0026650:intron | 35.0% |
| TGGAGGTTGAAAGATTCAAA+TGG | - | chr1_1:50549932-50549951 | Msa0026650:intron | 35.0% | |
| TTTATACCAATCAAACCAGG+TGG | + | chr1_1:50549962-50549981 | None:intergenic | 35.0% | |
| !! | GGTTTTATACCAATCAAACC+AGG | + | chr1_1:50549965-50549984 | None:intergenic | 35.0% |
| CTTACATTCTAACACATCCA+GGG | - | chr1_1:50550077-50550096 | Msa0026650:intron | 35.0% | |
| TCTATGACCACTACTTTGAT+TGG | - | chr1_1:50550346-50550365 | Msa0026650:intron | 35.0% | |
| CTATGACCACTACTTTGATT+GGG | - | chr1_1:50550347-50550366 | Msa0026650:intron | 35.0% | |
| TATGACCACTACTTTGATTG+GGG | - | chr1_1:50550348-50550367 | Msa0026650:intron | 35.0% | |
| AATTGAGTGCAATTAGACAG+AGG | - | chr1_1:50550391-50550410 | Msa0026650:intron | 35.0% | |
| TGTAAAGATAGGACCAAAGA+TGG | - | chr1_1:50550497-50550516 | Msa0026650:CDS | 35.0% | |
| TTGAGGGAATAAGATTTCCA+AGG | + | chr1_1:50550524-50550543 | None:intergenic | 35.0% | |
| GTAGCAACATGGAAATTTGA+GGG | + | chr1_1:50550540-50550559 | None:intergenic | 35.0% | |
| TGTAGCAACATGGAAATTTG+AGG | + | chr1_1:50550541-50550560 | None:intergenic | 35.0% | |
| AATTTCCATGTTGCTACATC+TGG | - | chr1_1:50550543-50550562 | Msa0026650:intron | 35.0% | |
| TTCTTCTGCTTTGCTCTTTC+AGG | - | chr1_1:50548241-50548260 | Msa0026650:three_prime_UTR | 40.0% | |
| TGGGAATCAAGTAACAAAGG+AGG | - | chr1_1:50548369-50548388 | Msa0026650:CDS | 40.0% | |
| GTGTAATTCCAGCATTTGCT+AGG | + | chr1_1:50548428-50548447 | None:intergenic | 40.0% | |
| GCAGAGAATCACAGTCAAAT+AGG | - | chr1_1:50548841-50548860 | Msa0026650:CDS | 40.0% | |
| ATGTCTCCGAAACTGCAAAT+CGG | + | chr1_1:50548889-50548908 | None:intergenic | 40.0% | |
| TAATGTATGAACAGAACCCC+CGG | + | chr1_1:50549258-50549277 | None:intergenic | 40.0% | |
| TCTAGATCATACAGTCTTCC+CGG | + | chr1_1:50549317-50549336 | None:intergenic | 40.0% | |
| !!! | CCCCAATCAAGTTTTGAATC+AGG | + | chr1_1:50549494-50549513 | None:intergenic | 40.0% |
| GATGACACTGCTTATTCTGA+TGG | - | chr1_1:50549533-50549552 | Msa0026650:CDS | 40.0% | |
| GGATTGAGATGATCAATGTC+AGG | + | chr1_1:50549599-50549618 | None:intergenic | 40.0% | |
| ! | ACTTCACCAGATTTTGCAGT+CGG | - | chr1_1:50549743-50549762 | Msa0026650:intron | 40.0% |
| !! | ATTTTGCAGTCGGAGAGTAT+TGG | - | chr1_1:50549753-50549772 | Msa0026650:intron | 40.0% |
| !! | AATTGGGTTGAAAATGGTGG+CGG | - | chr1_1:50549845-50549864 | Msa0026650:intron | 40.0% |
| ATTCTTCAAGCTGCTGTACA+AGG | - | chr1_1:50549902-50549921 | Msa0026650:intron | 40.0% | |
| GATTCAAATGGAAAACCACC+TGG | - | chr1_1:50549944-50549963 | Msa0026650:intron | 40.0% | |
| CAGGTTCAACTCAGAAACTT+TGG | - | chr1_1:50550020-50550039 | Msa0026650:intron | 40.0% | |
| TCCTTCTGATAAAGTCATGC+AGG | - | chr1_1:50550048-50550067 | Msa0026650:intron | 40.0% | |
| CCTTCTGATAAAGTCATGCA+GGG | - | chr1_1:50550049-50550068 | Msa0026650:intron | 40.0% | |
| GCTTACATTCTAACACATCC+AGG | - | chr1_1:50550076-50550095 | Msa0026650:intron | 40.0% | |
| ATAGTCAAATAGTGACTGCG+CGG | - | chr1_1:50550187-50550206 | Msa0026650:intron | 40.0% | |
| AGTGCAATTAGACAGAGGAA+TGG | - | chr1_1:50550396-50550415 | Msa0026650:intron | 40.0% | |
| GTGCAATTAGACAGAGGAAT+GGG | - | chr1_1:50550397-50550416 | Msa0026650:intron | 40.0% | |
| AGATTTCCAAGGTCCATCTT+TGG | + | chr1_1:50550513-50550532 | None:intergenic | 40.0% | |
| ATTCCTGACCTAGCAAATGC+TGG | - | chr1_1:50548417-50548436 | Msa0026650:CDS | 45.0% | |
| ! | ATTCCAGCATTTGCTAGGTC+AGG | + | chr1_1:50548423-50548442 | None:intergenic | 45.0% |
| !! | CAACACTTTGAGATGGAGGA+GGG | + | chr1_1:50548461-50548480 | None:intergenic | 45.0% |
| !! | TCACAGCCGATTTGCAGTTT+CGG | - | chr1_1:50548880-50548899 | Msa0026650:CDS | 45.0% |
| TCATATTCAGCCTGTATCGC+AGG | + | chr1_1:50548964-50548983 | None:intergenic | 45.0% | |
| TGTTCTGATCGCATGACTGT+AGG | - | chr1_1:50549005-50549024 | Msa0026650:CDS | 45.0% | |
| GTTCTGATCGCATGACTGTA+GGG | - | chr1_1:50549006-50549025 | Msa0026650:CDS | 45.0% | |
| ACTGCTTATTCTGATGGCAC+CGG | - | chr1_1:50549539-50549558 | Msa0026650:CDS | 45.0% | |
| TACTCTCCGACTGCAAAATC+TGG | + | chr1_1:50549752-50549771 | None:intergenic | 45.0% | |
| TCGCTTTCTTACGGACAAGA+TGG | - | chr1_1:50549779-50549798 | Msa0026650:intron | 45.0% | |
| AGCAGCTTGAAGAATCCCTT+TGG | + | chr1_1:50549897-50549916 | None:intergenic | 45.0% | |
| CTGCTGTACAAGGAGAACTT+TGG | - | chr1_1:50549912-50549931 | Msa0026650:intron | 45.0% | |
| CTGTACAAGGAGAACTTTGG+AGG | - | chr1_1:50549915-50549934 | Msa0026650:intron | 45.0% | |
| ! | GGAAAACCACCTGGTTTGAT+TGG | - | chr1_1:50549953-50549972 | Msa0026650:intron | 45.0% |
| CCCTGCATGACTTTATCAGA+AGG | + | chr1_1:50550052-50550071 | None:intergenic | 45.0% | |
| AGTACTATTGATGGAGTCCC+TGG | + | chr1_1:50550097-50550116 | None:intergenic | 45.0% | |
| TAGTCAAATAGTGACTGCGC+GGG | - | chr1_1:50550188-50550207 | Msa0026650:intron | 45.0% | |
| TCAGTCCCCAATCAAAGTAG+TGG | + | chr1_1:50550356-50550375 | None:intergenic | 45.0% | |
| CTACTTTGATTGGGGACTGA+AGG | - | chr1_1:50550356-50550375 | Msa0026650:intron | 45.0% | |
| ATAGGACCAAAGATGGACCT+TGG | - | chr1_1:50550504-50550523 | Msa0026650:CDS | 45.0% | |
| CTTGTCCAGATGTAGCAACA+TGG | + | chr1_1:50550551-50550570 | None:intergenic | 45.0% | |
| TGGACAAGACTATGCTGTGT+GGG | - | chr1_1:50550563-50550582 | Msa0026650:intron | 45.0% | |
| !! | CCAACACTTTGAGATGGAGG+AGG | + | chr1_1:50548462-50548481 | None:intergenic | 50.0% |
| CCTCCTCCATCTCAAAGTGT+TGG | - | chr1_1:50548459-50548478 | Msa0026650:CDS | 50.0% | |
| ! | TGAGGGCCAACACTTTGAGA+TGG | + | chr1_1:50548468-50548487 | None:intergenic | 50.0% |
| !! | TCTCAAAGTGTTGGCCCTCA+AGG | - | chr1_1:50548468-50548487 | Msa0026650:CDS | 50.0% |
| TCACTGTAGTCCTGCGATAC+AGG | - | chr1_1:50548951-50548970 | Msa0026650:CDS | 50.0% | |
| AGTCTTCCCGGAAGATATCC+TGG | + | chr1_1:50549305-50549324 | None:intergenic | 50.0% | |
| GCAGAAAGAAAAGATGGCCG+AGG | - | chr1_1:50549440-50549459 | Msa0026650:CDS | 50.0% | |
| CTGCTTATTCTGATGGCACC+GGG | - | chr1_1:50549540-50549559 | Msa0026650:CDS | 50.0% | |
| CTCTCCACTATCAAGGTTCC+CGG | + | chr1_1:50549561-50549580 | None:intergenic | 50.0% | |
| !! | GGGAACCTTGATAGTGGAGA+GGG | - | chr1_1:50549560-50549579 | Msa0026650:CDS | 50.0% |
| CATAGCCCTCTCCACTATCA+AGG | + | chr1_1:50549568-50549587 | None:intergenic | 50.0% | |
| CTGGACAAGACTATGCTGTG+TGG | - | chr1_1:50550562-50550581 | Msa0026650:intron | 50.0% | |
| !! | GGGCCAACACTTTGAGATGG+AGG | + | chr1_1:50548465-50548484 | None:intergenic | 55.0% |
| CAGGAGTCCCACCTTCAAAG+AGG | + | chr1_1:50549475-50549494 | None:intergenic | 55.0% | |
| !! | CGGGAACCTTGATAGTGGAG+AGG | - | chr1_1:50549559-50549578 | Msa0026650:CDS | 55.0% |
| ! | GGCACCGGGAACCTTGATAG+TGG | - | chr1_1:50549554-50549573 | Msa0026650:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 50548179 | 50550729 | 50548179 | ID=Msa0026650;Name=Msa0026650 |
| chr1_1 | mRNA | 50548179 | 50550729 | 50548179 | ID=Msa0026650-mRNA-1;Parent=Msa0026650;Name=Msa0026650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.75|1|1|1|4|106|432 |
| chr1_1 | exon | 50548179 | 50548563 | 50548179 | ID=Msa0026650-mRNA-1:exon:14676;Parent=Msa0026650-mRNA-1 |
| chr1_1 | exon | 50548797 | 50549602 | 50548797 | ID=Msa0026650-mRNA-1:exon:14675;Parent=Msa0026650-mRNA-1 |
| chr1_1 | exon | 50550419 | 50550548 | 50550419 | ID=Msa0026650-mRNA-1:exon:14674;Parent=Msa0026650-mRNA-1 |
| chr1_1 | exon | 50550646 | 50550729 | 50550646 | ID=Msa0026650-mRNA-1:exon:14673;Parent=Msa0026650-mRNA-1 |
| chr1_1 | CDS | 50550646 | 50550729 | 50550646 | ID=Msa0026650-mRNA-1:cds;Parent=Msa0026650-mRNA-1 |
| chr1_1 | CDS | 50550419 | 50550548 | 50550419 | ID=Msa0026650-mRNA-1:cds;Parent=Msa0026650-mRNA-1 |
| chr1_1 | CDS | 50548797 | 50549602 | 50548797 | ID=Msa0026650-mRNA-1:cds;Parent=Msa0026650-mRNA-1 |
| chr1_1 | CDS | 50548285 | 50548563 | 50548285 | ID=Msa0026650-mRNA-1:cds;Parent=Msa0026650-mRNA-1 |
| chr1_1 | three_prime_UTR | 50548179 | 50548284 | 50548179 | ID=Msa0026650-mRNA-1:three_prime_utr;Parent=Msa0026650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
