Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145230 | XP_003589186.1 | 96.515 | 373 | 13 | 0 | 54 | 426 | 49 | 421 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145230 | sp|P17859|AMYA_VIGMU | 86.327 | 373 | 51 | 0 | 54 | 426 | 49 | 421 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145230 | G7I3K2 | 96.515 | 373 | 13 | 0 | 54 | 426 | 49 | 421 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026650 | Msa0145230 | 0.843265 | 1.558296e-58 | -8.615850e-47 |
| Msa0051930 | Msa0145230 | 0.807613 | 4.639499e-50 | -8.615850e-47 |
| Msa0145140 | Msa0145230 | 0.909943 | 3.254079e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145230 | MtrunA17_Chr1g0153391 | 96.515 | 373 | 13 | 0 | 54 | 426 | 49 | 421 | 0.0 | 754 |
| Msa0145230 | MtrunA17_Chr7g0218861 | 48.663 | 374 | 178 | 6 | 57 | 425 | 595 | 959 | 2.45e-119 | 370 |
| Msa0145230 | MtrunA17_Chr1g0157251 | 46.950 | 377 | 182 | 7 | 54 | 426 | 69 | 431 | 3.06e-118 | 352 |
| Msa0145230 | MtrunA17_Chr8g0362571 | 48.404 | 376 | 176 | 8 | 57 | 427 | 548 | 910 | 5.83e-115 | 358 |
| Msa0145230 | MtrunA17_Chr1g0153421 | 69.369 | 222 | 67 | 1 | 207 | 428 | 1 | 221 | 4.77e-109 | 320 |
| Msa0145230 | MtrunA17_Chr1g0153411 | 62.252 | 151 | 53 | 3 | 54 | 202 | 50 | 198 | 2.53e-61 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145230 | AT4G25000.1 | 68.733 | 371 | 111 | 3 | 57 | 426 | 55 | 421 | 0.0 | 539 |
| Msa0145230 | AT1G76130.2 | 46.950 | 377 | 182 | 7 | 54 | 426 | 50 | 412 | 3.62e-118 | 351 |
| Msa0145230 | AT1G76130.1 | 46.950 | 377 | 182 | 7 | 54 | 426 | 50 | 412 | 3.62e-118 | 351 |
| Msa0145230 | AT1G69830.1 | 47.745 | 377 | 179 | 8 | 57 | 428 | 524 | 887 | 1.42e-112 | 351 |
Find 105 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAGGTGAACTTGTTAAT+TGG | 0.215478 | 1_4:-4908847 | Msa0145230:CDS |
| AATTGGCTCAAAACTGATAT+TGG | 0.241670 | 1_4:-4909025 | Msa0145230:CDS |
| ATTGGTATAAAACCAGAAAA+TGG | 0.275218 | 1_4:-4908704 | Msa0145230:CDS |
| TAGAATAACCAAAATTTATA+TGG | 0.276397 | 1_4:-4908960 | Msa0145230:CDS |
| TGAGTGCTATAAATACTATT+TGG | 0.303705 | 1_4:-4908086 | Msa0145230:CDS |
| TCCTGATTCAAAACTTGATT+GGG | 0.305041 | 1_4:-4909185 | Msa0145230:CDS |
| TAACAGTGAATGTTATATTC+TGG | 0.324353 | 1_4:+4907986 | None:intergenic |
| CTCCTGATTCAAAACTTGAT+TGG | 0.329202 | 1_4:-4909186 | Msa0145230:CDS |
| GGTGGTGGTGGATGCGGTGG+CGG | 0.342219 | 1_4:+4911325 | None:intergenic |
| AGATTTCCAAGGTCCATCTT+TGG | 0.347454 | 1_4:+4908165 | None:intergenic |
| TCTATGACCACTTCTTTGAT+TGG | 0.352956 | 1_4:-4908329 | Msa0145230:CDS |
| GGAAAACCACCTGGTTTGAT+TGG | 0.356913 | 1_4:-4908722 | Msa0145230:CDS |
| CTATGACCACTTCTTTGATT+GGG | 0.358529 | 1_4:-4908328 | Msa0145230:CDS |
| GATCTAGATGCATCAAAATA+TGG | 0.359589 | 1_4:-4909346 | Msa0145230:CDS |
| CTTGTTAATTGGGTTGAAAA+TGG | 0.363355 | 1_4:-4908836 | Msa0145230:CDS |
| TAGAGGTGAACTTGTTAATT+GGG | 0.373990 | 1_4:-4908846 | Msa0145230:CDS |
| GGTGGTGGATGCGGTGGCGG+CGG | 0.379762 | 1_4:+4911328 | None:intergenic |
| TTTATTGATAATCATGATAC+AGG | 0.381056 | 1_4:-4908674 | Msa0145230:CDS |
| AATTTCCATGTTGCTACATC+TGG | 0.381851 | 1_4:-4908132 | Msa0145230:CDS |
| GGATGCGGTGGCGGCGGCGA+TGG | 0.392017 | 1_4:+4911334 | None:intergenic |
| GGAATTTATTGCCTCTTTGA+AGG | 0.394854 | 1_4:-4909214 | Msa0145230:CDS |
| AGTTATCTGAATGGATGAAT+TGG | 0.402706 | 1_4:-4909042 | Msa0145230:CDS |
| TACTCTCCGACTGCAAAATC+TGG | 0.406961 | 1_4:+4908926 | None:intergenic |
| ATGCTGGAATTACACATGTT+TGG | 0.408607 | 1_4:-4910242 | Msa0145230:CDS |
| GTTAGAGAAAGTACTATTGA+TGG | 0.413060 | 1_4:+4908572 | None:intergenic |
| TCTAGATCATACAGTCTTCC+CGG | 0.429494 | 1_4:+4909361 | None:intergenic |
| TTTAATCCAGGATATCTTCC+GGG | 0.436223 | 1_4:-4909379 | Msa0145230:intron |
| AAGATGAAGACGACGATGAC+GGG | 0.443304 | 1_4:-4911422 | Msa0145230:CDS |
| AGTACTATTGATGGAGTCCC+TGG | 0.447084 | 1_4:+4908581 | None:intergenic |
| TATTGGAATTCGCTTTCTTA+CGG | 0.453954 | 1_4:-4908905 | Msa0145230:CDS |
| TCGAAGGGTGGTGGTGGATG+CGG | 0.456198 | 1_4:+4911319 | None:intergenic |
| CAGGTTCAACTCAGAAACTT+TGG | 0.458721 | 1_4:-4908655 | Msa0145230:CDS |
| TCCTTCTGATAAAGTCATGC+AGG | 0.462173 | 1_4:-4908627 | Msa0145230:CDS |
| AATCACTTCTCTCCCTCCTC+AGG | 0.463942 | 1_4:-4911272 | Msa0145230:intron |
| CTTCTTTGATTGGGGACTGA+AGG | 0.464178 | 1_4:-4908319 | Msa0145230:CDS |
| TCGCTTTCTTACGGACAAGA+TGG | 0.467894 | 1_4:-4908896 | Msa0145230:CDS |
| AACAAGATTATTGTAAAGAT+AGG | 0.470619 | 1_4:-4908189 | Msa0145230:CDS |
| TGCGGTGGCGGCGGCGATGG+CGG | 0.477763 | 1_4:+4911337 | None:intergenic |
| AGAAGAAGAAGAATAAGATC+TGG | 0.486025 | 1_4:+4911361 | None:intergenic |
| ATGACTTTATCAGAAGGAAA+TGG | 0.486625 | 1_4:+4908632 | None:intergenic |
| TATGACCACTTCTTTGATTG+GGG | 0.487867 | 1_4:-4908327 | Msa0145230:CDS |
| TGGAGGTTGAAAGATTCAAA+TGG | 0.490377 | 1_4:-4908743 | Msa0145230:CDS |
| AGCAGCTTGAAGAATCCCTT+TGG | 0.493729 | 1_4:+4908781 | None:intergenic |
| GGAAAAGCGAATGGAAGAAA+AGG | 0.493818 | 1_4:+4911295 | None:intergenic |
| AAAGGTTCGAAGGGTGGTGG+TGG | 0.494406 | 1_4:+4911313 | None:intergenic |
| CTCTCCGCTATCGAGGTTCC+CGG | 0.501176 | 1_4:+4909117 | None:intergenic |
| TGTAAAGATAGGACCAAAGA+TGG | 0.501815 | 1_4:-4908178 | Msa0145230:CDS |
| AGAAAAGGTTCGAAGGGTGG+TGG | 0.503842 | 1_4:+4911310 | None:intergenic |
| GTGCAATTAGACAGAGGAAT+GGG | 0.509731 | 1_4:-4908278 | Msa0145230:CDS |
| GCTTACATTCTAACACATCC+AGG | 0.510803 | 1_4:-4908599 | Msa0145230:CDS |
| GAGAAAATCGGTACCTGAGG+AGG | 0.511296 | 1_4:+4911259 | None:intergenic |
| CTGTACAAGGAGAACTTTGG+AGG | 0.514098 | 1_4:-4908760 | Msa0145230:CDS |
| CCTCCTCCATCTCAAAGTGT+TGG | 0.516703 | 1_4:-4910216 | Msa0145230:CDS |
| TCATCTTTGCAAATGAAAGA+TGG | 0.518192 | 1_4:+4909160 | None:intergenic |
| TGTAGCAACATGGAAATTTG+AGG | 0.519009 | 1_4:+4908137 | None:intergenic |
| ATTCTTCAAGCTGCTGTACA+AGG | 0.520893 | 1_4:-4908773 | Msa0145230:CDS |
| TGAGGAGGGAGAGAAGTGAT+TGG | 0.523679 | 1_4:+4911274 | None:intergenic |
| TCTCAAAGTGTTGGCCCTCA+AGG | 0.524248 | 1_4:-4910207 | Msa0145230:intron |
| GAAGATGAAGACGACGATGA+CGG | 0.532162 | 1_4:-4911423 | None:intergenic |
| AAGGGTGGTGGTGGATGCGG+TGG | 0.534788 | 1_4:+4911322 | None:intergenic |
| TTTATTGCCTCTTTGAAGGT+GGG | 0.537291 | 1_4:-4909210 | Msa0145230:CDS |
| ACTGCTTATTCTGATGGCAC+CGG | 0.544916 | 1_4:-4909136 | Msa0145230:CDS |
| GAAGTGATTGGAAAAGCGAA+TGG | 0.547097 | 1_4:+4911286 | None:intergenic |
| CAAAGAGGCAATAAATTCCT+CGG | 0.550411 | 1_4:+4909218 | None:intergenic |
| ATAGGACCAAAGATGGACCT+TGG | 0.553570 | 1_4:-4908171 | Msa0145230:CDS |
| CTGCTGTACAAGGAGAACTT+TGG | 0.555296 | 1_4:-4908763 | Msa0145230:CDS |
| CTGCTTATTCTGATGGCACC+GGG | 0.555830 | 1_4:-4909135 | Msa0145230:CDS |
| GTAGCAACATGGAAATTTGA+GGG | 0.557475 | 1_4:+4908138 | None:intergenic |
| TGGAAGAAGAGTTGAGTGAT+CGG | 0.557922 | 1_4:+4911381 | None:intergenic |
| ATTTATTGCCTCTTTGAAGG+TGG | 0.559530 | 1_4:-4909211 | Msa0145230:CDS |
| GGGAACCTCGATAGCGGAGA+GGG | 0.560471 | 1_4:-4909115 | Msa0145230:CDS |
| AGAACAGCAGAAAGAAAAGA+TGG | 0.561548 | 1_4:-4909241 | Msa0145230:CDS |
| GGAAGAAAAGGTTCGAAGGG+TGG | 0.562521 | 1_4:+4911307 | None:intergenic |
| CCTTCTGATAAAGTCATGCA+GGG | 0.563584 | 1_4:-4908626 | Msa0145230:CDS |
| TTGAGGGAATAAGATTTCCA+AGG | 0.564275 | 1_4:+4908154 | None:intergenic |
| TGAGGGCCAACACTTTGAGA+TGG | 0.573353 | 1_4:+4910210 | None:intergenic |
| TGGTCAAGACTATGCTGTGT+GGG | 0.584191 | 1_4:-4908112 | Msa0145230:CDS |
| TCAGTCCCCAATCAAAGAAG+TGG | 0.586468 | 1_4:+4908322 | None:intergenic |
| GATGACACTGCTTATTCTGA+TGG | 0.586526 | 1_4:-4909142 | Msa0145230:CDS |
| AATTGGGTTGAAAATGGTGG+CGG | 0.595388 | 1_4:-4908830 | Msa0145230:CDS |
| GCAGAAAGAAAAGATGGCCG+AGG | 0.596444 | 1_4:-4909235 | Msa0145230:CDS |
| CCAACACTTTGAGATGGAGG+AGG | 0.598534 | 1_4:+4910216 | None:intergenic |
| GGGCCAACACTTTGAGATGG+AGG | 0.600166 | 1_4:+4910213 | None:intergenic |
| CCCTGCATGACTTTATCAGA+AGG | 0.602185 | 1_4:+4908626 | None:intergenic |
| AGAAAATCGGTACCTGAGGA+GGG | 0.603357 | 1_4:+4911260 | None:intergenic |
| GGATTGAGATGATCAATGTC+AGG | 0.603905 | 1_4:+4909079 | None:intergenic |
| CATAGCCCTCTCCGCTATCG+AGG | 0.604195 | 1_4:+4909110 | None:intergenic |
| GAATGGAAGAAAAGGTTCGA+AGG | 0.610270 | 1_4:+4911303 | None:intergenic |
| GATTCAAATGGAAAACCACC+TGG | 0.610843 | 1_4:-4908731 | Msa0145230:CDS |
| CTTGACCAGATGTAGCAACA+TGG | 0.619213 | 1_4:+4908127 | None:intergenic |
| AGTGCAATTAGACAGAGGAA+TGG | 0.622780 | 1_4:-4908279 | Msa0145230:CDS |
| CCTGATTCAAAACTTGATTG+GGG | 0.623674 | 1_4:-4909184 | Msa0145230:CDS |
| GTTGAGTGATCGGAGGAACA+AGG | 0.623875 | 1_4:+4911391 | None:intergenic |
| GTTAATTGGGTTGAAAATGG+TGG | 0.627623 | 1_4:-4908833 | Msa0145230:CDS |
| CTTACATTCTAACACATCCA+GGG | 0.632166 | 1_4:-4908598 | Msa0145230:CDS |
| AATGGAAGAAAAGGTTCGAA+GGG | 0.640544 | 1_4:+4911304 | None:intergenic |
| TATAATCAAGATGCAGCTAG+AGG | 0.641274 | 1_4:-4908863 | Msa0145230:CDS |
| GGCACCGGGAACCTCGATAG+CGG | 0.641724 | 1_4:-4909121 | Msa0145230:CDS |
| CAGGAGTCCCACCTTCAAAG+AGG | 0.644880 | 1_4:+4909203 | None:intergenic |
| CAACACTTTGAGATGGAGGA+GGG | 0.651277 | 1_4:+4910217 | None:intergenic |
| CGGGAACCTCGATAGCGGAG+AGG | 0.667596 | 1_4:-4909116 | Msa0145230:CDS |
| CTGGTCAAGACTATGCTGTG+TGG | 0.677321 | 1_4:-4908113 | Msa0145230:CDS |
| TTTATACCAATCAAACCAGG+TGG | 0.686102 | 1_4:+4908716 | None:intergenic |
| AATTGAGTGCAATTAGACAG+AGG | 0.688509 | 1_4:-4908284 | Msa0145230:CDS |
| AAGAAGAGTTGAGTGATCGG+AGG | 0.693570 | 1_4:+4911384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTCTATTATAGTATT+AGG | + | chr1_4:4909388-4909407 | None:intergenic | 10.0% |
| !! | ACTATAATAGAAATATAAAT+AGG | - | chr1_4:4909391-4909410 | Msa0145230:intron | 10.0% |
| !! | TCTAATAAAATTGAGAAAAT+CGG | + | chr1_4:4908143-4908162 | None:intergenic | 15.0% |
| !!! | TTTAATTTGAACTTGAATTT+AGG | + | chr1_4:4908235-4908254 | None:intergenic | 15.0% |
| !!! | AATAATTGTAAAATTGATTC+CGG | - | chr1_4:4908356-4908375 | Msa0145230:intron | 15.0% |
| !! | ATTTGTATGTAAAGTTATAA+TGG | - | chr1_4:4909002-4909021 | Msa0145230:CDS | 15.0% |
| !! | AAGTATGCAAAAAATTATTT+GGG | + | chr1_4:4909775-4909794 | None:intergenic | 15.0% |
| !! | AAAGTATGCAAAAAATTATT+TGG | + | chr1_4:4909776-4909795 | None:intergenic | 15.0% |
| !!! | TTGTTAATTTTTTTTAATCC+AGG | - | chr1_4:4909996-4910015 | Msa0145230:intron | 15.0% |
| !!! | ATATAAATTTTGGTTATTCT+AGG | + | chr1_4:4910428-4910447 | None:intergenic | 15.0% |
| !! | TAGAATAACCAAAATTTATA+TGG | - | chr1_4:4910427-4910446 | Msa0145230:intron | 15.0% |
| !!! | ATTATATTTTTATGCAGTTA+TGG | - | chr1_4:4911017-4911036 | Msa0145230:intron | 15.0% |
| !! | ACGGTAATAATTTAAGAAAA+TGG | + | chr1_4:4908885-4908904 | None:intergenic | 20.0% |
| !! | CACTCATAATGAAATATTAA+TGG | - | chr1_4:4909225-4909244 | Msa0145230:CDS | 20.0% |
| !! | TAATTAGAGAATCATATGTT+TGG | + | chr1_4:4909287-4909306 | None:intergenic | 20.0% |
| !! | AATTGATATGTAATCATGTT+AGG | - | chr1_4:4909317-4909336 | Msa0145230:CDS | 20.0% |
| !! | AGCAACATAATAATAGTATT+AGG | - | chr1_4:4909498-4909517 | Msa0145230:intron | 20.0% |
| !!! | TAATAGTATTAGGTTGTTTA+TGG | - | chr1_4:4909508-4909527 | Msa0145230:intron | 20.0% |
| !! | ATTTAAAAACTATCTTGTTG+TGG | - | chr1_4:4909749-4909768 | Msa0145230:intron | 20.0% |
| !! | TCGTTTAATAAATATAAAGC+TGG | - | chr1_4:4909803-4909822 | Msa0145230:intron | 20.0% |
| !! | AATAAATATAAAGCTGGATA+TGG | - | chr1_4:4909809-4909828 | Msa0145230:intron | 20.0% |
| !! | ATAGTTACTAACAAGTAAAT+AGG | - | chr1_4:4909835-4909854 | Msa0145230:intron | 20.0% |
| !!! | GAATCTTTATTCATTTTAAC+CGG | - | chr1_4:4909948-4909967 | Msa0145230:intron | 20.0% |
| !!! | AATCTTTATTCATTTTAACC+GGG | - | chr1_4:4909949-4909968 | Msa0145230:intron | 20.0% |
| !!! | AGTGTTTTCCATATAAATTT+TGG | + | chr1_4:4910438-4910457 | None:intergenic | 20.0% |
| !!! | TTTATTGATAATCATGATAC+AGG | - | chr1_4:4910713-4910732 | Msa0145230:intron | 20.0% |
| !! | ACATGATATAAAAAGTGAAA+AGG | + | chr1_4:4910840-4910859 | None:intergenic | 20.0% |
| !! | AACAAGATTATTGTAAAGAT+AGG | - | chr1_4:4911198-4911217 | Msa0145230:intron | 20.0% |
| !! | GCATAGATTTTTGAATATGA+AGG | + | chr1_4:4908208-4908227 | None:intergenic | 25.0% |
| !!! | GAAATCGATTTTGATATGTT+AGG | + | chr1_4:4908598-4908617 | None:intergenic | 25.0% |
| !!! | CAATCTAGAATGAATTTTGT+AGG | - | chr1_4:4908752-4908771 | Msa0145230:CDS | 25.0% |
| ! | CATAACAAATCATCATACAT+TGG | + | chr1_4:4908981-4909000 | None:intergenic | 25.0% |
| ! | ACAAAAATGTATTACCTTGA+GGG | + | chr1_4:4909197-4909216 | None:intergenic | 25.0% |
| ! | TACAAAAATGTATTACCTTG+AGG | + | chr1_4:4909198-4909217 | None:intergenic | 25.0% |
| ! | ATCATATGTTTGGAAAATGA+AGG | + | chr1_4:4909277-4909296 | None:intergenic | 25.0% |
| ! | CAAGACTAATGGTTAAATTT+AGG | - | chr1_4:4909865-4909884 | Msa0145230:intron | 25.0% |
| ! | CAGCTTGTATTTAAATACTA+TGG | + | chr1_4:4909891-4909910 | None:intergenic | 25.0% |
| !!! | AAGCTGTATACATTTTTTAG+AGG | - | chr1_4:4909905-4909924 | Msa0145230:intron | 25.0% |
| !!! | ATCTTTATTCATTTTAACCG+GGG | - | chr1_4:4909950-4909969 | Msa0145230:intron | 25.0% |
| ! | TACAAAAAGAGTTATCTGAA+TGG | - | chr1_4:4910336-4910355 | Msa0145230:intron | 25.0% |
| !! | AAAACTGATATTGGATTTTC+TGG | - | chr1_4:4910371-4910390 | Msa0145230:intron | 25.0% |
| !!! | TGGAGATTTGATTTTGTTAA+AGG | - | chr1_4:4910395-4910414 | Msa0145230:intron | 25.0% |
| !!! | CATTTGATTTTACTACCAAA+GGG | - | chr1_4:4910591-4910610 | Msa0145230:intron | 25.0% |
| ! | ATTGGTATAAAACCAGAAAA+TGG | - | chr1_4:4910683-4910702 | Msa0145230:intron | 25.0% |
| !! | ATAAATGTTACACCATTTTC+TGG | + | chr1_4:4910698-4910717 | None:intergenic | 25.0% |
| !! | TTTGAGCATTGTATAAAAGA+CGG | - | chr1_4:4910863-4910882 | Msa0145230:intron | 25.0% |
| ! | TGAGTGCTATAAATACTATT+TGG | - | chr1_4:4911301-4911320 | Msa0145230:CDS | 25.0% |
| !!! | CAAGATTCTTTGTTTTTTTG+GGG | + | chr1_4:4911369-4911388 | None:intergenic | 25.0% |
| !!! | GCAAGATTCTTTGTTTTTTT+GGG | + | chr1_4:4911370-4911389 | None:intergenic | 25.0% |
| !!! | TGCAAGATTCTTTGTTTTTT+TGG | + | chr1_4:4911371-4911390 | None:intergenic | 25.0% |
| ! | TAACAGTGAATGTTATATTC+TGG | + | chr1_4:4911404-4911423 | None:intergenic | 25.0% |
| AGAAGAAGAAGAATAAGATC+TGG | + | chr1_4:4908029-4908048 | None:intergenic | 30.0% | |
| TAATTCTGTTGCATTTAGCT+AGG | - | chr1_4:4908280-4908299 | Msa0145230:CDS | 30.0% | |
| AGGTTATGTCTATTGTAGTA+TGG | - | chr1_4:4908300-4908319 | Msa0145230:CDS | 30.0% | |
| ! | CTTCAAGTTAGAATCTATTC+CGG | - | chr1_4:4908554-4908573 | Msa0145230:intron | 30.0% |
| ATAAATCACTTGCCTATGTT+TGG | + | chr1_4:4908660-4908679 | None:intergenic | 30.0% | |
| ATAGGCAAGTGATTTATGTT+TGG | - | chr1_4:4908663-4908682 | Msa0145230:CDS | 30.0% | |
| GAAATGATTGAGTGTATGTT+TGG | + | chr1_4:4908863-4908882 | None:intergenic | 30.0% | |
| TTATCTATGAAACACAGACA+CGG | + | chr1_4:4908904-4908923 | None:intergenic | 30.0% | |
| TTATCTATGAAACACAGACA+CGG | + | chr1_4:4908904-4908923 | None:intergenic | 30.0% | |
| TATTTCATTATGAGTGAAGC+AGG | + | chr1_4:4909221-4909240 | None:intergenic | 30.0% | |
| TAGGTACAATTCAAGACTAA+TGG | - | chr1_4:4909854-4909873 | Msa0145230:intron | 30.0% | |
| !! | TCTTTATTCATTTTAACCGG+GGG | - | chr1_4:4909951-4909970 | Msa0145230:intron | 30.0% |
| ! | TTTTAATCCAGGATATCTTC+CGG | - | chr1_4:4910007-4910026 | Msa0145230:intron | 30.0% |
| GATCTAGATGCATCAAAATA+TGG | - | chr1_4:4910041-4910060 | Msa0145230:intron | 30.0% | |
| TCCTGATTCAAAACTTGATT+GGG | - | chr1_4:4910202-4910221 | Msa0145230:intron | 30.0% | |
| TCATCTTTGCAAATGAAAGA+TGG | + | chr1_4:4910230-4910249 | None:intergenic | 30.0% | |
| ! | GATAACTCTTTTTGTACTTG+AGG | + | chr1_4:4910332-4910351 | None:intergenic | 30.0% |
| AGTTATCTGAATGGATGAAT+TGG | - | chr1_4:4910345-4910364 | Msa0145230:intron | 30.0% | |
| ! | AATTGGCTCAAAACTGATAT+TGG | - | chr1_4:4910362-4910381 | Msa0145230:intron | 30.0% |
| TATTGGAATTCGCTTTCTTA+CGG | - | chr1_4:4910482-4910501 | Msa0145230:intron | 30.0% | |
| !! | TAGAGGTGAACTTGTTAATT+GGG | - | chr1_4:4910541-4910560 | Msa0145230:intron | 30.0% |
| !! | CTTGTTAATTGGGTTGAAAA+TGG | - | chr1_4:4910551-4910570 | Msa0145230:intron | 30.0% |
| !! | GCATTTGATTTTACTACCAA+AGG | - | chr1_4:4910590-4910609 | Msa0145230:intron | 30.0% |
| ATGACTTTATCAGAAGGAAA+TGG | + | chr1_4:4910758-4910777 | None:intergenic | 30.0% | |
| !! | GTTAGAGAAAGTACTATTGA+TGG | + | chr1_4:4910818-4910837 | None:intergenic | 30.0% |
| AATGGAAGAAAAGGTTCGAA+GGG | + | chr1_4:4908086-4908105 | None:intergenic | 35.0% | |
| AATAGCCTAGAAAAGCTCAT+CGG | + | chr1_4:4908261-4908280 | None:intergenic | 35.0% | |
| !! | TACGCCTCTAAAATCAAATG+TGG | - | chr1_4:4908820-4908839 | Msa0145230:CDS | 35.0% |
| !! | TGAGCCACATTTGATTTTAG+AGG | + | chr1_4:4908827-4908846 | None:intergenic | 35.0% |
| ATGCTGGAATTACACATGTT+TGG | - | chr1_4:4909145-4909164 | Msa0145230:CDS | 35.0% | |
| ! | TACATGATCAAAGTTCTAGC+AGG | - | chr1_4:4909467-4909486 | Msa0145230:intron | 35.0% |
| CAGAGAATCACAGTCAAATA+GGG | - | chr1_4:4909554-4909573 | Msa0145230:intron | 35.0% | |
| TTTAATCCAGGATATCTTCC+GGG | - | chr1_4:4910008-4910027 | Msa0145230:intron | 35.0% | |
| ! | CTTTTCTTTCTGCTGTTCTA+TGG | + | chr1_4:4910145-4910164 | None:intergenic | 35.0% |
| AGAACAGCAGAAAGAAAAGA+TGG | - | chr1_4:4910146-4910165 | Msa0145230:intron | 35.0% | |
| CAAAGAGGCAATAAATTCCT+CGG | + | chr1_4:4910172-4910191 | None:intergenic | 35.0% | |
| GGAATTTATTGCCTCTTTGA+AGG | - | chr1_4:4910173-4910192 | Msa0145230:intron | 35.0% | |
| ! | ATTTATTGCCTCTTTGAAGG+TGG | - | chr1_4:4910176-4910195 | Msa0145230:intron | 35.0% |
| ! | TTTATTGCCTCTTTGAAGGT+GGG | - | chr1_4:4910177-4910196 | Msa0145230:intron | 35.0% |
| CTCCTGATTCAAAACTTGAT+TGG | - | chr1_4:4910201-4910220 | Msa0145230:intron | 35.0% | |
| CCTGATTCAAAACTTGATTG+GGG | - | chr1_4:4910203-4910222 | Msa0145230:intron | 35.0% | |
| ! | CTGATATTGGATTTTCTGGA+TGG | - | chr1_4:4910375-4910394 | Msa0145230:intron | 35.0% |
| TATAATCAAGATGCAGCTAG+AGG | - | chr1_4:4910524-4910543 | Msa0145230:intron | 35.0% | |
| !! | CTAGAGGTGAACTTGTTAAT+TGG | - | chr1_4:4910540-4910559 | Msa0145230:intron | 35.0% |
| !! | GTTAATTGGGTTGAAAATGG+TGG | - | chr1_4:4910554-4910573 | Msa0145230:intron | 35.0% |
| TGGAGGTTGAAAGATTCAAA+TGG | - | chr1_4:4910644-4910663 | Msa0145230:intron | 35.0% | |
| TTTATACCAATCAAACCAGG+TGG | + | chr1_4:4910674-4910693 | None:intergenic | 35.0% | |
| !! | GGTTTTATACCAATCAAACC+AGG | + | chr1_4:4910677-4910696 | None:intergenic | 35.0% |
| CTTACATTCTAACACATCCA+GGG | - | chr1_4:4910789-4910808 | Msa0145230:intron | 35.0% | |
| TCTATGACCACTTCTTTGAT+TGG | - | chr1_4:4911058-4911077 | Msa0145230:intron | 35.0% | |
| CTATGACCACTTCTTTGATT+GGG | - | chr1_4:4911059-4911078 | Msa0145230:intron | 35.0% | |
| TATGACCACTTCTTTGATTG+GGG | - | chr1_4:4911060-4911079 | Msa0145230:intron | 35.0% | |
| AATTGAGTGCAATTAGACAG+AGG | - | chr1_4:4911103-4911122 | Msa0145230:intron | 35.0% | |
| TGTAAAGATAGGACCAAAGA+TGG | - | chr1_4:4911209-4911228 | Msa0145230:intron | 35.0% | |
| TTGAGGGAATAAGATTTCCA+AGG | + | chr1_4:4911236-4911255 | None:intergenic | 35.0% | |
| GTAGCAACATGGAAATTTGA+GGG | + | chr1_4:4911252-4911271 | None:intergenic | 35.0% | |
| TGTAGCAACATGGAAATTTG+AGG | + | chr1_4:4911253-4911272 | None:intergenic | 35.0% | |
| AATTTCCATGTTGCTACATC+TGG | - | chr1_4:4911255-4911274 | Msa0145230:intron | 35.0% | |
| TGGAAGAAGAGTTGAGTGAT+CGG | + | chr1_4:4908009-4908028 | None:intergenic | 40.0% | |
| GAATGGAAGAAAAGGTTCGA+AGG | + | chr1_4:4908087-4908106 | None:intergenic | 40.0% | |
| GGAAAAGCGAATGGAAGAAA+AGG | + | chr1_4:4908095-4908114 | None:intergenic | 40.0% | |
| GAAGTGATTGGAAAAGCGAA+TGG | + | chr1_4:4908104-4908123 | None:intergenic | 40.0% | |
| ATTGAGAAAATCGGTACCTG+AGG | + | chr1_4:4908134-4908153 | None:intergenic | 40.0% | |
| ! | AAATGCCGATGAGCTTTTCT+AGG | - | chr1_4:4908253-4908272 | Msa0145230:CDS | 40.0% |
| CAAGTTAGAATCTATTCCGG+AGG | - | chr1_4:4908557-4908576 | Msa0145230:intron | 40.0% | |
| ! | GCAGCTAGAATTGATTCTAG+AGG | + | chr1_4:4908624-4908643 | None:intergenic | 40.0% |
| ! | AATTCTAGCTGCTCTAAACG+TGG | - | chr1_4:4908632-4908651 | Msa0145230:CDS | 40.0% |
| CTAAACGTGGAACCAAACAT+AGG | - | chr1_4:4908645-4908664 | Msa0145230:CDS | 40.0% | |
| ! | TGTATGTTTGGTTCCACTGT+TGG | + | chr1_4:4908851-4908870 | None:intergenic | 40.0% |
| GTGTAATTCCAGCATTTGCT+AGG | + | chr1_4:4909140-4909159 | None:intergenic | 40.0% | |
| GCAGAGAATCACAGTCAAAT+AGG | - | chr1_4:4909553-4909572 | Msa0145230:intron | 40.0% | |
| ATGTCTCCGAAACTGCAAAT+CGG | + | chr1_4:4909601-4909620 | None:intergenic | 40.0% | |
| TAATGTATGAACAGAACCCC+CGG | + | chr1_4:4909970-4909989 | None:intergenic | 40.0% | |
| TCTAGATCATACAGTCTTCC+CGG | + | chr1_4:4910029-4910048 | None:intergenic | 40.0% | |
| !!! | CCCCAATCAAGTTTTGAATC+AGG | + | chr1_4:4910206-4910225 | None:intergenic | 40.0% |
| GATGACACTGCTTATTCTGA+TGG | - | chr1_4:4910245-4910264 | Msa0145230:CDS | 40.0% | |
| GGATTGAGATGATCAATGTC+AGG | + | chr1_4:4910311-4910330 | None:intergenic | 40.0% | |
| ! | ACTTCACCAGATTTTGCAGT+CGG | - | chr1_4:4910455-4910474 | Msa0145230:intron | 40.0% |
| !! | ATTTTGCAGTCGGAGAGTAT+TGG | - | chr1_4:4910465-4910484 | Msa0145230:intron | 40.0% |
| !! | AATTGGGTTGAAAATGGTGG+CGG | - | chr1_4:4910557-4910576 | Msa0145230:intron | 40.0% |
| ATTCTTCAAGCTGCTGTACA+AGG | - | chr1_4:4910614-4910633 | Msa0145230:intron | 40.0% | |
| GATTCAAATGGAAAACCACC+TGG | - | chr1_4:4910656-4910675 | Msa0145230:intron | 40.0% | |
| CAGGTTCAACTCAGAAACTT+TGG | - | chr1_4:4910732-4910751 | Msa0145230:intron | 40.0% | |
| TCCTTCTGATAAAGTCATGC+AGG | - | chr1_4:4910760-4910779 | Msa0145230:intron | 40.0% | |
| CCTTCTGATAAAGTCATGCA+GGG | - | chr1_4:4910761-4910780 | Msa0145230:intron | 40.0% | |
| GCTTACATTCTAACACATCC+AGG | - | chr1_4:4910788-4910807 | Msa0145230:intron | 40.0% | |
| ATAGTCAAATAGTGACTGCG+CGG | - | chr1_4:4910899-4910918 | Msa0145230:intron | 40.0% | |
| AGTGCAATTAGACAGAGGAA+TGG | - | chr1_4:4911108-4911127 | Msa0145230:intron | 40.0% | |
| GTGCAATTAGACAGAGGAAT+GGG | - | chr1_4:4911109-4911128 | Msa0145230:intron | 40.0% | |
| AGATTTCCAAGGTCCATCTT+TGG | + | chr1_4:4911225-4911244 | None:intergenic | 40.0% | |
| AAGAAGAGTTGAGTGATCGG+AGG | + | chr1_4:4908006-4908025 | None:intergenic | 45.0% | |
| AGAAAATCGGTACCTGAGGA+GGG | + | chr1_4:4908130-4908149 | None:intergenic | 45.0% | |
| !! | CTCTTCGACTCACTTTTAGC+CGG | + | chr1_4:4908378-4908397 | None:intergenic | 45.0% |
| GCTAAAAGTGAGTCGAAGAG+TGG | - | chr1_4:4908378-4908397 | Msa0145230:intron | 45.0% | |
| GATGTTCTCAAGTTTGCCTC+CGG | + | chr1_4:4908576-4908595 | None:intergenic | 45.0% | |
| AAATGTGGCTCATCCAACAG+TGG | - | chr1_4:4908835-4908854 | Msa0145230:CDS | 45.0% | |
| ATTCCTGACCTAGCAAATGC+TGG | - | chr1_4:4909129-4909148 | Msa0145230:CDS | 45.0% | |
| ! | ATTCCAGCATTTGCTAGGTC+AGG | + | chr1_4:4909135-4909154 | None:intergenic | 45.0% |
| !! | CAACACTTTGAGATGGAGGA+GGG | + | chr1_4:4909173-4909192 | None:intergenic | 45.0% |
| !! | TCACAGCCGATTTGCAGTTT+CGG | - | chr1_4:4909592-4909611 | Msa0145230:intron | 45.0% |
| TCATATTCAGCCTGTATCGC+AGG | + | chr1_4:4909676-4909695 | None:intergenic | 45.0% | |
| TGTTCTGATCGCATGACTGT+AGG | - | chr1_4:4909717-4909736 | Msa0145230:intron | 45.0% | |
| GTTCTGATCGCATGACTGTA+GGG | - | chr1_4:4909718-4909737 | Msa0145230:intron | 45.0% | |
| ACTGCTTATTCTGATGGCAC+CGG | - | chr1_4:4910251-4910270 | Msa0145230:intron | 45.0% | |
| TACTCTCCGACTGCAAAATC+TGG | + | chr1_4:4910464-4910483 | None:intergenic | 45.0% | |
| TCGCTTTCTTACGGACAAGA+TGG | - | chr1_4:4910491-4910510 | Msa0145230:intron | 45.0% | |
| AGCAGCTTGAAGAATCCCTT+TGG | + | chr1_4:4910609-4910628 | None:intergenic | 45.0% | |
| CTGCTGTACAAGGAGAACTT+TGG | - | chr1_4:4910624-4910643 | Msa0145230:intron | 45.0% | |
| CTGTACAAGGAGAACTTTGG+AGG | - | chr1_4:4910627-4910646 | Msa0145230:intron | 45.0% | |
| ! | GGAAAACCACCTGGTTTGAT+TGG | - | chr1_4:4910665-4910684 | Msa0145230:intron | 45.0% |
| CCCTGCATGACTTTATCAGA+AGG | + | chr1_4:4910764-4910783 | None:intergenic | 45.0% | |
| AGTACTATTGATGGAGTCCC+TGG | + | chr1_4:4910809-4910828 | None:intergenic | 45.0% | |
| TAGTCAAATAGTGACTGCGC+GGG | - | chr1_4:4910900-4910919 | Msa0145230:intron | 45.0% | |
| TCAGTCCCCAATCAAAGAAG+TGG | + | chr1_4:4911068-4911087 | None:intergenic | 45.0% | |
| CTTCTTTGATTGGGGACTGA+AGG | - | chr1_4:4911068-4911087 | Msa0145230:intron | 45.0% | |
| ATAGGACCAAAGATGGACCT+TGG | - | chr1_4:4911216-4911235 | Msa0145230:intron | 45.0% | |
| CTTGACCAGATGTAGCAACA+TGG | + | chr1_4:4911263-4911282 | None:intergenic | 45.0% | |
| TGGTCAAGACTATGCTGTGT+GGG | - | chr1_4:4911275-4911294 | Msa0145230:CDS | 45.0% | |
| GTTGAGTGATCGGAGGAACA+AGG | + | chr1_4:4907999-4908018 | None:intergenic | 50.0% | |
| AGAAAAGGTTCGAAGGGTGG+TGG | + | chr1_4:4908080-4908099 | None:intergenic | 50.0% | |
| GGAAGAAAAGGTTCGAAGGG+TGG | + | chr1_4:4908083-4908102 | None:intergenic | 50.0% | |
| TGAGGAGGGAGAGAAGTGAT+TGG | + | chr1_4:4908116-4908135 | None:intergenic | 50.0% | |
| AATCACTTCTCTCCCTCCTC+AGG | - | chr1_4:4908115-4908134 | Msa0145230:CDS | 50.0% | |
| GAGAAAATCGGTACCTGAGG+AGG | + | chr1_4:4908131-4908150 | None:intergenic | 50.0% | |
| !! | CCAACACTTTGAGATGGAGG+AGG | + | chr1_4:4909174-4909193 | None:intergenic | 50.0% |
| CCTCCTCCATCTCAAAGTGT+TGG | - | chr1_4:4909171-4909190 | Msa0145230:CDS | 50.0% | |
| ! | TGAGGGCCAACACTTTGAGA+TGG | + | chr1_4:4909180-4909199 | None:intergenic | 50.0% |
| !! | TCTCAAAGTGTTGGCCCTCA+AGG | - | chr1_4:4909180-4909199 | Msa0145230:CDS | 50.0% |
| TCACTGTAGTCCTGCGATAC+AGG | - | chr1_4:4909663-4909682 | Msa0145230:intron | 50.0% | |
| AGTCTTCCCGGAAGATATCC+TGG | + | chr1_4:4910017-4910036 | None:intergenic | 50.0% | |
| GCAGAAAGAAAAGATGGCCG+AGG | - | chr1_4:4910152-4910171 | Msa0145230:intron | 50.0% | |
| CTGCTTATTCTGATGGCACC+GGG | - | chr1_4:4910252-4910271 | Msa0145230:intron | 50.0% | |
| CTGGTCAAGACTATGCTGTG+TGG | - | chr1_4:4911274-4911293 | Msa0145230:CDS | 50.0% | |
| ! | AAAGGTTCGAAGGGTGGTGG+TGG | + | chr1_4:4908077-4908096 | None:intergenic | 55.0% |
| !! | GGGCCAACACTTTGAGATGG+AGG | + | chr1_4:4909177-4909196 | None:intergenic | 55.0% |
| CAGGAGTCCCACCTTCAAAG+AGG | + | chr1_4:4910187-4910206 | None:intergenic | 55.0% | |
| !! | TCGAAGGGTGGTGGTGGATG+CGG | + | chr1_4:4908071-4908090 | None:intergenic | 60.0% |
| CTCTCCGCTATCGAGGTTCC+CGG | + | chr1_4:4910273-4910292 | None:intergenic | 60.0% | |
| !! | GGGAACCTCGATAGCGGAGA+GGG | - | chr1_4:4910272-4910291 | Msa0145230:intron | 60.0% |
| CATAGCCCTCTCCGCTATCG+AGG | + | chr1_4:4910280-4910299 | None:intergenic | 60.0% | |
| !! | AAGGGTGGTGGTGGATGCGG+TGG | + | chr1_4:4908068-4908087 | None:intergenic | 65.0% |
| ! | GGCACCGGGAACCTCGATAG+CGG | - | chr1_4:4910266-4910285 | Msa0145230:intron | 65.0% |
| !! | CGGGAACCTCGATAGCGGAG+AGG | - | chr1_4:4910271-4910290 | Msa0145230:intron | 65.0% |
| !! | GGTGGTGGTGGATGCGGTGG+CGG | + | chr1_4:4908065-4908084 | None:intergenic | 70.0% |
| !! | GGTGGTGGATGCGGTGGCGG+CGG | + | chr1_4:4908062-4908081 | None:intergenic | 75.0% |
| !! | TGCGGTGGCGGCGGCGATGG+CGG | + | chr1_4:4908053-4908072 | None:intergenic | 80.0% |
| !! | GGATGCGGTGGCGGCGGCGA+TGG | + | chr1_4:4908056-4908075 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4907968 | 4911441 | 4907968 | ID=Msa0145230;Name=Msa0145230 |
| chr1_4 | mRNA | 4907968 | 4911441 | 4907968 | ID=Msa0145230-mRNA-1;Parent=Msa0145230;Name=Msa0145230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.5|0.75|1|1|4|106|437 |
| chr1_4 | exon | 4907968 | 4908352 | 4907968 | ID=Msa0145230-mRNA-1:exon:2066;Parent=Msa0145230-mRNA-1 |
| chr1_4 | exon | 4908586 | 4909391 | 4908586 | ID=Msa0145230-mRNA-1:exon:2065;Parent=Msa0145230-mRNA-1 |
| chr1_4 | exon | 4910208 | 4910267 | 4910208 | ID=Msa0145230-mRNA-1:exon:2064;Parent=Msa0145230-mRNA-1 |
| chr1_4 | exon | 4911273 | 4911441 | 4911273 | ID=Msa0145230-mRNA-1:exon:2063;Parent=Msa0145230-mRNA-1 |
| chr1_4 | CDS | 4911273 | 4911441 | 4911273 | ID=Msa0145230-mRNA-1:cds;Parent=Msa0145230-mRNA-1 |
| chr1_4 | CDS | 4910208 | 4910267 | 4910208 | ID=Msa0145230-mRNA-1:cds;Parent=Msa0145230-mRNA-1 |
| chr1_4 | CDS | 4908586 | 4909391 | 4908586 | ID=Msa0145230-mRNA-1:cds;Parent=Msa0145230-mRNA-1 |
| chr1_4 | CDS | 4908074 | 4908352 | 4908074 | ID=Msa0145230-mRNA-1:cds;Parent=Msa0145230-mRNA-1 |
| chr1_4 | three_prime_UTR | 4907968 | 4908073 | 4907968 | ID=Msa0145230-mRNA-1:three_prime_utr;Parent=Msa0145230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
