Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145760 | XP_013466096.2 | 97.664 | 642 | 14 | 1 | 1 | 641 | 1 | 642 | 0.0 | 1306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145760 | sp|Q8RXN5|TYW1_ARATH | 72.057 | 637 | 166 | 5 | 5 | 633 | 6 | 638 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145760 | A0A396JJV0 | 97.664 | 642 | 14 | 1 | 1 | 641 | 1 | 642 | 0.0 | 1306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003610 | Msa0145760 | 0.931600 | 2.970782e-94 | -8.615850e-47 |
| Msa0058320 | Msa0145760 | 0.899386 | 2.086938e-77 | -8.615850e-47 |
| Msa0138650 | Msa0145760 | 0.831807 | 1.353831e-55 | -8.615850e-47 |
| Msa0145760 | Msa1152120 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145760 | MtrunA17_Chr1g0155111 | 97.664 | 642 | 14 | 1 | 1 | 641 | 1 | 642 | 0.0 | 1306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145760 | AT1G75200.1 | 72.057 | 637 | 166 | 5 | 5 | 633 | 6 | 638 | 0.0 | 947 |
Find 220 sgRNAs with CRISPR-Local
Find 552 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGTTAGGGTTGGGGTTT+TGG | 0.092746 | 1_4:-5479145 | None:intergenic |
| TCCTGTTATTAGAGCAAATT+TGG | 0.158620 | 1_4:+5479829 | Msa0145760:CDS |
| GACCACTCTTTGGAGATTTC+TGG | 0.166707 | 1_4:+5484734 | Msa0145760:CDS |
| TTGCTAGCATAGTAGTATTT+TGG | 0.231265 | 1_4:+5486029 | Msa0145760:three_prime_UTR |
| GCAGAATTTACGATCTCTAT+TGG | 0.246263 | 1_4:-5481153 | None:intergenic |
| ATTTAAATTCAGGTGGCTTC+TGG | 0.249615 | 1_4:+5485568 | Msa0145760:intron |
| AGTGCTGTTTAGTGGGCTTT+AGG | 0.252834 | 1_4:-5478900 | None:intergenic |
| TTGCAGGGTTATAAGATTAT+TGG | 0.257743 | 1_4:+5480388 | Msa0145760:intron |
| TTTATCTCTGGATACATAAT+AGG | 0.262090 | 1_4:-5484478 | None:intergenic |
| ACCAAATTTGCTCTAATAAC+AGG | 0.278071 | 1_4:-5479830 | None:intergenic |
| CGTTTCCTTGGGGAGATCTT+CGG | 0.282190 | 1_4:-5479282 | None:intergenic |
| ACACCATCCTGGGCCGTCTA+TGG | 0.292318 | 1_4:+5485625 | Msa0145760:CDS |
| TTTCCTCAATTGCCTCGAAT+TGG | 0.309958 | 1_4:-5485888 | None:intergenic |
| TTTCTTTATTGTGTAACTAT+AGG | 0.318590 | 1_4:+5485774 | Msa0145760:three_prime_UTR |
| AACCTCAAAACCTGGGTAAT+AGG | 0.319156 | 1_4:-5484589 | None:intergenic |
| GTTTCCTTGGGGAGATCTTC+GGG | 0.325569 | 1_4:-5479281 | None:intergenic |
| AAGTGTAGATTTGCGGTATT+CGG | 0.326741 | 1_4:+5479425 | Msa0145760:CDS |
| TTTACGGAATTGAGAGTCAT+AGG | 0.364405 | 1_4:+5480488 | Msa0145760:CDS |
| CTTCCTCGAAGGTGCTTTAC+CGG | 0.369795 | 1_4:-5479747 | None:intergenic |
| CCCTTGATTTCAATGAAGTC+GGG | 0.372694 | 1_4:-5485151 | None:intergenic |
| CAGGTTAGAAGTTAGGCCTT+TGG | 0.372783 | 1_4:+5485725 | Msa0145760:exon |
| ACCACTCTTTGGAGATTTCT+GGG | 0.373617 | 1_4:+5484735 | Msa0145760:CDS |
| CTTAAGAGAGTCCTTTGTTC+CGG | 0.374790 | 1_4:-5484701 | None:intergenic |
| ACTAAGAAGTTCAAAATTGA+TGG | 0.376599 | 1_4:+5485432 | Msa0145760:CDS |
| TGTTGATGATGGTGGTGATT+TGG | 0.380928 | 1_4:+5479625 | Msa0145760:CDS |
| TCCTTATCGTTGCTTCCACT+TGG | 0.382287 | 1_4:+5479309 | Msa0145760:CDS |
| TTCCTCAATTGCCTCGAATT+GGG | 0.383627 | 1_4:-5485887 | None:intergenic |
| TAAAGAAATGAAAGGGGAAA+TGG | 0.383908 | 1_4:-5485759 | None:intergenic |
| AGGTTAGAAGTTAGGCCTTT+GGG | 0.386484 | 1_4:+5485726 | Msa0145760:exon |
| AAGTCGAGCCGCAAAGAATC+AGG | 0.393504 | 1_4:+5485706 | Msa0145760:CDS |
| ATCCAGGACAGTTGAGATAT+AGG | 0.397266 | 1_4:+5485668 | Msa0145760:CDS |
| GAGGCGGTTAGAGAGGGTTT+TGG | 0.398722 | 1_4:-5479198 | None:intergenic |
| CCAGGCCGTAACAAAACAAC+CGG | 0.404763 | 1_4:+5478861 | Msa0145760:five_prime_UTR |
| GTATTACAACATATTTCAAT+AGG | 0.405724 | 1_4:+5485796 | Msa0145760:three_prime_UTR |
| TATTATAAACTCTTCAGTAT+TGG | 0.406516 | 1_4:+5485124 | Msa0145760:CDS |
| GTTGATCTTGAAGATATTGC+CGG | 0.412171 | 1_4:+5479728 | Msa0145760:CDS |
| ACTTCTAACCTGATTCTTTG+CGG | 0.414058 | 1_4:-5485714 | None:intergenic |
| GATAAGGAGAAGCGTTTCCT+TGG | 0.416520 | 1_4:-5479294 | None:intergenic |
| TACACAATAAAGAAATGAAA+GGG | 0.418933 | 1_4:-5485766 | None:intergenic |
| TTGTGGATGAGTTGCACAAA+AGG | 0.421585 | 1_4:+5484506 | Msa0145760:CDS |
| TAGAGCAAATTTGGTGAAGC+AGG | 0.424165 | 1_4:+5479838 | Msa0145760:CDS |
| GCGGTATTCGGTGTCGGTAG+TGG | 0.425958 | 1_4:+5479437 | Msa0145760:CDS |
| TGCATTTGTAACTAGAAAAG+TGG | 0.426329 | 1_4:-5484536 | None:intergenic |
| CTATGATAAATTTCATGATC+TGG | 0.430965 | 1_4:+5485476 | Msa0145760:CDS |
| TACGGCCTGGTGGGCTTTAG+CGG | 0.431109 | 1_4:-5478848 | None:intergenic |
| GCAATCGATAGACCACTCTT+TGG | 0.431413 | 1_4:+5484724 | Msa0145760:CDS |
| GTTGCTGAAGCCTATTACCC+AGG | 0.436691 | 1_4:+5484579 | Msa0145760:CDS |
| GTTTAATCATATTTGTATGC+TGG | 0.437012 | 1_4:-5481182 | None:intergenic |
| CATTGTGCATTATCTCTTGT+TGG | 0.437204 | 1_4:+5484451 | Msa0145760:CDS |
| ACATGGCTGCCACACCATCC+TGG | 0.438997 | 1_4:+5485614 | Msa0145760:CDS |
| CGATTGGCTTGCGGAGAGTT+CGG | 0.440051 | 1_4:+5479370 | Msa0145760:CDS |
| CCTCGAATTGGGAAAACATT+GGG | 0.442699 | 1_4:-5485876 | None:intergenic |
| ATAAGGAGAAGCGTTTCCTT+GGG | 0.442770 | 1_4:-5479293 | None:intergenic |
| GGATTTGTAGAAGAAGTAGA+AGG | 0.443145 | 1_4:-5479084 | None:intergenic |
| TCCACAAGTGTATTTATCTC+TGG | 0.443802 | 1_4:-5484490 | None:intergenic |
| CGGAACAAAGGACTCTCTTA+AGG | 0.444253 | 1_4:+5484702 | Msa0145760:CDS |
| AGTATAAATTCTTCGCCGAT+TGG | 0.444572 | 1_4:+5479354 | Msa0145760:CDS |
| AAACAAATGAAAGGAGTTCC+TGG | 0.444665 | 1_4:+5481201 | Msa0145760:CDS |
| CAAATCCAGTAGCGAAAAGT+TGG | 0.447385 | 1_4:+5481112 | Msa0145760:CDS |
| TTCCTATATCTCAACTGTCC+TGG | 0.455066 | 1_4:-5485670 | None:intergenic |
| TTATTTGCACATGCCAAGCT+AGG | 0.467055 | 1_4:-5481063 | None:intergenic |
| TAATACAATGCTTTAGACAT+AGG | 0.470953 | 1_4:+5485828 | Msa0145760:three_prime_UTR |
| GAGAGTAATGGGAAGTTGAA+TGG | 0.471230 | 1_4:+5479788 | Msa0145760:CDS |
| TTGAAGAGAGGTAGATAAAG+TGG | 0.472489 | 1_4:+5486053 | Msa0145760:three_prime_UTR |
| TCCATCCTTTCACAAGGGTC+AGG | 0.473152 | 1_4:-5485081 | None:intergenic |
| TGCCGACGTGAAAGCTTTCT+CGG | 0.477548 | 1_4:+5485329 | Msa0145760:CDS |
| GCGAGGAGTGTGAGACGAGC+TGG | 0.480350 | 1_4:-5479044 | None:intergenic |
| CTACGGTGAAGGAGAGTAAT+GGG | 0.482227 | 1_4:+5479777 | Msa0145760:CDS |
| AAGTGGTGTGGGAAGGTTGT+TGG | 0.484900 | 1_4:+5479590 | Msa0145760:CDS |
| ACCCGACTTCATTGAAATCA+AGG | 0.485531 | 1_4:+5485150 | Msa0145760:CDS |
| TGATGGTGGTGAGGTGGATG+AGG | 0.488135 | 1_4:+5479559 | Msa0145760:CDS |
| GAAGAGGGAGTGCTGTTTAG+TGG | 0.490851 | 1_4:-5478908 | None:intergenic |
| CATGGAGGCAACCCCTAGCT+TGG | 0.491145 | 1_4:+5481050 | Msa0145760:CDS |
| GTAGAAGAAGTAGAAGGTTG+TGG | 0.494820 | 1_4:-5479078 | None:intergenic |
| GGTGAGAATTTCAATGCGGT+TGG | 0.495729 | 1_4:+5479467 | Msa0145760:CDS |
| ATCAAGGGTGTTACATATTG+TGG | 0.497705 | 1_4:+5485166 | Msa0145760:CDS |
| ACCCTTGATTTCAATGAAGT+CGG | 0.497934 | 1_4:-5485152 | None:intergenic |
| CATGGCTGCCACACCATCCT+GGG | 0.498661 | 1_4:+5485615 | Msa0145760:CDS |
| AAAGAATCAGGTTAGAAGTT+AGG | 0.499260 | 1_4:+5485718 | Msa0145760:exon |
| TTCGAGGAAGCTGGTGGCTA+CGG | 0.500414 | 1_4:+5479760 | Msa0145760:CDS |
| AGAGTCTGATGAGGAGGAAG+AGG | 0.501593 | 1_4:+5479691 | Msa0145760:CDS |
| CAGCATTCCATCCTTTCACA+AGG | 0.501696 | 1_4:-5485087 | None:intergenic |
| GTTGAATGGAAAGAAAGAAA+TGG | 0.505644 | 1_4:+5479802 | Msa0145760:CDS |
| GAAAAGTTGGGTGTGGGAGA+TGG | 0.507932 | 1_4:+5481125 | Msa0145760:CDS |
| CCCAAGTGGAAGCAACGATA+AGG | 0.508085 | 1_4:-5479310 | None:intergenic |
| GAATTTCAATGCGGTTGGTA+AGG | 0.508915 | 1_4:+5479472 | Msa0145760:CDS |
| GCCTCGAATTGGGAAAACAT+TGG | 0.510673 | 1_4:-5485877 | None:intergenic |
| TTCCCAATTCGAGGCAATTG+AGG | 0.514152 | 1_4:+5485885 | Msa0145760:three_prime_UTR |
| TATTTGCACATGCCAAGCTA+GGG | 0.514611 | 1_4:-5481062 | None:intergenic |
| TCACTCGTGTTGTGTCCTCT+TGG | 0.516638 | 1_4:+5485404 | Msa0145760:CDS |
| GGATTCCTTGACTGCTCTGA+AGG | 0.516788 | 1_4:+5485033 | Msa0145760:intron |
| GCGGTGGAAAACGCCGTGGG+AGG | 0.517098 | 1_4:-5478943 | None:intergenic |
| TGAGGAGGAAGAGGCGGAGT+CGG | 0.518460 | 1_4:+5479700 | Msa0145760:CDS |
| GGTAACGAGATGATTCCGTT+GGG | 0.519802 | 1_4:+5479524 | Msa0145760:CDS |
| GAGGAAGGTGGATTTGATCC+AGG | 0.523501 | 1_4:+5485652 | Msa0145760:CDS |
| AGGTGAGGAAACGGTGGAGG+CGG | 0.524499 | 1_4:-5479214 | None:intergenic |
| CGGTGGAAAACGCCGTGGGA+GGG | 0.526313 | 1_4:-5478942 | None:intergenic |
| TGTGAGTGTGAGTGTGGCGG+TGG | 0.528582 | 1_4:-5478959 | None:intergenic |
| CAGTAGCGAAAAGTTGGGTG+TGG | 0.532702 | 1_4:+5481118 | Msa0145760:CDS |
| TAAAGCACCTTCGAGGAAGC+TGG | 0.534689 | 1_4:+5479751 | Msa0145760:CDS |
| GGTGTCGGTAGTGGAGGTTA+TGG | 0.534919 | 1_4:+5479446 | Msa0145760:CDS |
| CTCAGCTCCATAGACGGCCC+AGG | 0.535554 | 1_4:-5485632 | None:intergenic |
| GGTTGTTTGAGGTGAGGAAA+CGG | 0.535614 | 1_4:-5479223 | None:intergenic |
| GTCGAATGCAAGGTTGTTTG+AGG | 0.536695 | 1_4:-5479234 | None:intergenic |
| TTTGTCGAAGTGTAGATTTG+CGG | 0.536931 | 1_4:+5479418 | Msa0145760:CDS |
| AAGTCACAGCTTCGAGGTCG+AGG | 0.539284 | 1_4:+5480445 | Msa0145760:CDS |
| ATGAAAGGGGAAATGGATGT+TGG | 0.539507 | 1_4:-5485752 | None:intergenic |
| TTGATGGCCAGTGGTATACA+TGG | 0.541192 | 1_4:+5485448 | Msa0145760:CDS |
| GTTGCTTCCACTTGGGAAGA+CGG | 0.542672 | 1_4:+5479317 | Msa0145760:CDS |
| TTGAGGTGAGGAAACGGTGG+AGG | 0.544628 | 1_4:-5479217 | None:intergenic |
| ATTCTTCGCCGATTGGCTTG+CGG | 0.545441 | 1_4:+5479361 | Msa0145760:CDS |
| CTCTGTCTCTGAAAAGCCAA+GGG | 0.546175 | 1_4:+5485355 | Msa0145760:CDS |
| AAGAGGGAGTGCTGTTTAGT+GGG | 0.548000 | 1_4:-5478907 | None:intergenic |
| AGGAGATGTTGATGGTGGTG+AGG | 0.548049 | 1_4:+5479550 | Msa0145760:CDS |
| TGTTGGTTTGAGAAATGAAG+AGG | 0.549143 | 1_4:-5479172 | None:intergenic |
| GCTTTCACGTCGGCATGCCA+AGG | 0.550330 | 1_4:-5485321 | None:intergenic |
| GAAGCTGGTGGCTACGGTGA+AGG | 0.550823 | 1_4:+5479766 | Msa0145760:CDS |
| GTGAAACGGATGAAGGCGTT+GGG | 0.552770 | 1_4:+5479500 | Msa0145760:CDS |
| GCCTGACCCTTGTGAAAGGA+TGG | 0.553096 | 1_4:+5485080 | Msa0145760:CDS |
| TGAAGAAGAGTCTGATGAGG+AGG | 0.553756 | 1_4:+5479685 | Msa0145760:CDS |
| CGAACTCTCCGCAAGCCAAT+CGG | 0.555358 | 1_4:-5479369 | None:intergenic |
| TTACACAATAAAGAAATGAA+AGG | 0.555394 | 1_4:-5485767 | None:intergenic |
| TGATAAGAATGGCATGGTAA+TGG | 0.556178 | 1_4:-5479018 | None:intergenic |
| ACGCAATGCTATTTATTGCA+AGG | 0.558732 | 1_4:-5485984 | None:intergenic |
| TGGACTAAGTCACAGCTTCG+AGG | 0.559406 | 1_4:+5480439 | Msa0145760:CDS |
| AGGCAACTTCATACTCCCCT+TGG | 0.560657 | 1_4:-5485371 | None:intergenic |
| AACGGTGGAGGCGGTTAGAG+AGG | 0.565434 | 1_4:-5479205 | None:intergenic |
| CCTTATCGTTGCTTCCACTT+GGG | 0.567188 | 1_4:+5479310 | Msa0145760:CDS |
| GTCTGATGAGGAGGAAGAGG+CGG | 0.567189 | 1_4:+5479694 | Msa0145760:CDS |
| TGCTACATCAAAATTAACAA+TGG | 0.568819 | 1_4:+5485290 | Msa0145760:CDS |
| GGAGATTGTGAAACGGATGA+AGG | 0.571123 | 1_4:+5479493 | Msa0145760:CDS |
| TAACAATGGAAAATGTCCCT+TGG | 0.571608 | 1_4:+5485304 | Msa0145760:CDS |
| AGTCTATCCATGTATACCAC+TGG | 0.572314 | 1_4:-5485455 | None:intergenic |
| GCTCTGTCTCTGAAAAGCCA+AGG | 0.575623 | 1_4:+5485354 | Msa0145760:CDS |
| TCCAGAGATAAATACACTTG+TGG | 0.576447 | 1_4:+5484489 | Msa0145760:CDS |
| TCAGGCGGTATACAGTGCGC+TGG | 0.577014 | 1_4:-5485063 | None:intergenic |
| ACGGTGGAGGCGGTTAGAGA+GGG | 0.577423 | 1_4:-5479204 | None:intergenic |
| GCTACGGTGAAGGAGAGTAA+TGG | 0.579239 | 1_4:+5479776 | Msa0145760:CDS |
| TGGTAATGGTGATTCGATGA+TGG | 0.579437 | 1_4:-5479004 | None:intergenic |
| TGGTAACGAGATGATTCCGT+TGG | 0.580232 | 1_4:+5479523 | Msa0145760:CDS |
| AGATGTTGATGGTGGTGAGG+TGG | 0.580983 | 1_4:+5479553 | Msa0145760:CDS |
| CGAGCTGGTACTGATAAGAA+TGG | 0.582169 | 1_4:-5479029 | None:intergenic |
| GCCGTCTATGGAGCTGAGGA+AGG | 0.583318 | 1_4:+5485637 | Msa0145760:CDS |
| TGGATGAGTTGCACAAAAGG+AGG | 0.584833 | 1_4:+5484509 | Msa0145760:CDS |
| AAATCCAGTAGCGAAAAGTT+GGG | 0.586529 | 1_4:+5481113 | Msa0145760:CDS |
| TTGCCGGTAAAGCACCTTCG+AGG | 0.590223 | 1_4:+5479744 | Msa0145760:CDS |
| AAGAATTTATACTCCGGCGG+TGG | 0.594684 | 1_4:-5479344 | None:intergenic |
| CAGTGTAGATGCCGGAACAA+AGG | 0.595194 | 1_4:+5484690 | Msa0145760:CDS |
| AATATGATTAAACAAATGAA+AGG | 0.595549 | 1_4:+5481192 | Msa0145760:CDS |
| GTGGTGTCAAGATTTGTAGA+TGG | 0.595777 | 1_4:+5480419 | Msa0145760:CDS |
| GAAGAAGTAGAAGGTTGTGG+CGG | 0.596045 | 1_4:-5479075 | None:intergenic |
| AGGGAAAATGAAAACGAAGA+GGG | 0.597802 | 1_4:-5478923 | None:intergenic |
| AGATTTGCGGTATTCGGTGT+CGG | 0.597906 | 1_4:+5479431 | Msa0145760:CDS |
| GCAGACCGCTAAAGCCCACC+AGG | 0.598724 | 1_4:+5478843 | Msa0145760:five_prime_UTR |
| TGATGAAGAAGAGTCTGATG+AGG | 0.598927 | 1_4:+5479682 | Msa0145760:CDS |
| TGTGAAACGGATGAAGGCGT+TGG | 0.600791 | 1_4:+5479499 | Msa0145760:CDS |
| ACACGAGTGAACATGCTCAC+AGG | 0.600820 | 1_4:-5485391 | None:intergenic |
| ATCCTTTCACAAGGGTCAGG+CGG | 0.604119 | 1_4:-5485078 | None:intergenic |
| ACATTGGGACTTAAATACAC+TGG | 0.604849 | 1_4:-5485861 | None:intergenic |
| GTCTATGGAGCTGAGGAAGG+TGG | 0.604936 | 1_4:+5485640 | Msa0145760:CDS |
| ATGCAAGGTTGTTTGAGGTG+AGG | 0.606431 | 1_4:-5479229 | None:intergenic |
| CTTTCACGTCGGCATGCCAA+GGG | 0.607070 | 1_4:-5485320 | None:intergenic |
| TTATATGTCAGTGTAGATGC+CGG | 0.607545 | 1_4:+5484682 | Msa0145760:CDS |
| TGTTTGAGGTGAGGAAACGG+TGG | 0.612358 | 1_4:-5479220 | None:intergenic |
| CCCGACTTCATTGAAATCAA+GGG | 0.615860 | 1_4:+5485151 | Msa0145760:CDS |
| ACCTCGGAGCGATTAACTGA+AGG | 0.618092 | 1_4:+5484415 | Msa0145760:CDS |
| CTTGCATTCGACATCATCGA+TGG | 0.618944 | 1_4:+5479245 | Msa0145760:CDS |
| GCTCCATAGACGGCCCAGGA+TGG | 0.619796 | 1_4:-5485628 | None:intergenic |
| TCCCAGAAATCTCCAAAGAG+TGG | 0.620464 | 1_4:-5484736 | None:intergenic |
| GGGGAAGGAGATGTTGATGG+TGG | 0.624176 | 1_4:+5479545 | Msa0145760:CDS |
| ATACTGAAAGGTGTTGATGA+TGG | 0.624454 | 1_4:+5479614 | Msa0145760:CDS |
| AGTAGCGAAAAGTTGGGTGT+GGG | 0.624662 | 1_4:+5481119 | Msa0145760:CDS |
| CTGGGCCGTCTATGGAGCTG+AGG | 0.625153 | 1_4:+5485633 | Msa0145760:CDS |
| TAACGAGATGATTCCGTTGG+GGG | 0.625747 | 1_4:+5479526 | Msa0145760:CDS |
| TTGTGGCGGAGAAGAGAGCG+AGG | 0.627299 | 1_4:-5479061 | None:intergenic |
| GTAGCCACCAGCTTCCTCGA+AGG | 0.629332 | 1_4:-5479758 | None:intergenic |
| AAGATTATTGGTTCACACAG+TGG | 0.629945 | 1_4:+5480400 | Msa0145760:CDS |
| ACCTTCCTCAGCTCCATAGA+CGG | 0.630071 | 1_4:-5485638 | None:intergenic |
| TTGGTAAGGAGATTGTGAAA+CGG | 0.632862 | 1_4:+5479486 | Msa0145760:CDS |
| AATGGATGTTGGCTACCCAA+AGG | 0.633448 | 1_4:-5485741 | None:intergenic |
| ATAGACGGCCCAGGATGGTG+TGG | 0.635119 | 1_4:-5485623 | None:intergenic |
| GTGGCGGTGGAAAACGCCGT+GGG | 0.635617 | 1_4:-5478946 | None:intergenic |
| TTGGCTTGCGGAGAGTTCGG+AGG | 0.639532 | 1_4:+5479373 | Msa0145760:CDS |
| TACCGCCTGACCCTTGTGAA+AGG | 0.639713 | 1_4:+5485076 | Msa0145760:CDS |
| ATTTGCACATGCCAAGCTAG+GGG | 0.639964 | 1_4:-5481061 | None:intergenic |
| AGTTCAAAATTGATGGCCAG+TGG | 0.640034 | 1_4:+5485439 | Msa0145760:CDS |
| CTGAAAGGTGTTGATGATGG+TGG | 0.640774 | 1_4:+5479617 | Msa0145760:CDS |
| TGATTTGGAGAATGCTGAGG+AGG | 0.642559 | 1_4:+5479640 | Msa0145760:CDS |
| TTATGAGTGAAATAGGTGCA+TGG | 0.642687 | 1_4:+5481032 | Msa0145760:intron |
| GTATTCGGTGTCGGTAGTGG+AGG | 0.643075 | 1_4:+5479440 | Msa0145760:CDS |
| GCGTCGTGTGAGTGTGAGTG+TGG | 0.644405 | 1_4:-5478965 | None:intergenic |
| TGGTACTGATAAGAATGGCA+TGG | 0.646282 | 1_4:-5479024 | None:intergenic |
| TAAGGAGAAGCGTTTCCTTG+GGG | 0.648137 | 1_4:-5479292 | None:intergenic |
| AGAGATAATGCACAATGCCG+TGG | 0.654133 | 1_4:-5484445 | None:intergenic |
| GTAACGAGATGATTCCGTTG+GGG | 0.654757 | 1_4:+5479525 | Msa0145760:CDS |
| AGCATTCCATCCTTTCACAA+GGG | 0.657631 | 1_4:-5485086 | None:intergenic |
| GGAAGACGGAAAACCACCGC+CGG | 0.657646 | 1_4:+5479331 | Msa0145760:CDS |
| GAGAATGCTGAGGAGGAAAG+CGG | 0.660819 | 1_4:+5479647 | Msa0145760:CDS |
| ACACAATAAAGAAATGAAAG+GGG | 0.662501 | 1_4:-5485765 | None:intergenic |
| TCACAGCTTCGAGGTCGAGG+TGG | 0.662705 | 1_4:+5480448 | Msa0145760:CDS |
| CATCGATGATGTCGAATGCA+AGG | 0.667846 | 1_4:-5479244 | None:intergenic |
| GAGGGAAAATGAAAACGAAG+AGG | 0.674701 | 1_4:-5478924 | None:intergenic |
| TAATGGTGATTCGATGATGG+TGG | 0.675556 | 1_4:-5479001 | None:intergenic |
| AGCACCTTCGAGGAAGCTGG+TGG | 0.676170 | 1_4:+5479754 | Msa0145760:CDS |
| CTCCGAGAAAGCTTTCACGT+CGG | 0.679985 | 1_4:-5485331 | None:intergenic |
| AAGGTTGTTGGAATACTGAA+AGG | 0.681691 | 1_4:+5479602 | Msa0145760:CDS |
| TCGGCGAAGAATTTATACTC+CGG | 0.685809 | 1_4:-5479350 | None:intergenic |
| GCGAAGAATTTATACTCCGG+CGG | 0.686331 | 1_4:-5479347 | None:intergenic |
| TAACTGAAGGCATGACACCA+CGG | 0.686690 | 1_4:+5484428 | Msa0145760:CDS |
| CAGGCCGTAACAAAACAACC+GGG | 0.688377 | 1_4:+5478862 | Msa0145760:five_prime_UTR |
| AAACGGATGAAGGCGTTGGG+TGG | 0.695210 | 1_4:+5479503 | Msa0145760:CDS |
| TGTGGCGGTGGAAAACGCCG+TGG | 0.697324 | 1_4:-5478947 | None:intergenic |
| TGGTGATTTGGAGAATGCTG+AGG | 0.702453 | 1_4:+5479637 | Msa0145760:CDS |
| TCGTGTGAGTGTGAGTGTGG+CGG | 0.704063 | 1_4:-5478962 | None:intergenic |
| GCCTTCAGTTAATCGCTCCG+AGG | 0.710873 | 1_4:-5484416 | None:intergenic |
| CGAACCCGAAGATCTCCCCA+AGG | 0.723663 | 1_4:+5479277 | Msa0145760:CDS |
| CGACGTGAAAGCTTTCTCGG+AGG | 0.740056 | 1_4:+5485332 | Msa0145760:CDS |
| TCTGTCTCTGAAAAGCCAAG+GGG | 0.741241 | 1_4:+5485356 | Msa0145760:CDS |
| TGAGTGAAATAGGTGCATGG+AGG | 0.759000 | 1_4:+5481035 | Msa0145760:intron |
| TTATGGTGAGAATTTCAATG+CGG | 0.771681 | 1_4:+5479463 | Msa0145760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGCTTATAATTT+GGG | - | chr1_4:5482601-5482620 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGCTTATAATT+TGG | - | chr1_4:5482602-5482621 | None:intergenic | 10.0% |
| !! | TTAAAAAAACAAGATTAAAT+AGG | + | chr1_4:5482822-5482841 | Msa0145760:intron | 10.0% |
| !!! | ATTTTTAATATATTTGTTGT+TGG | + | chr1_4:5483019-5483038 | Msa0145760:intron | 10.0% |
| !! | TTCTTAATAATATACTTAAA+TGG | - | chr1_4:5483544-5483563 | None:intergenic | 10.0% |
| !!! | AGAAAATATTTTTTTTTATG+GGG | + | chr1_4:5484057-5484076 | Msa0145760:intron | 10.0% |
| !! | AATATGATTAAACAAATGAA+AGG | + | chr1_4:5481192-5481211 | Msa0145760:CDS | 15.0% |
| !! | AAAGAAAATATAAAATTACC+AGG | - | chr1_4:5481222-5481241 | None:intergenic | 15.0% |
| !! | TGATGAATATAATCAAATAA+AGG | - | chr1_4:5481516-5481535 | None:intergenic | 15.0% |
| !!! | AATATTAATAGTACTGAAAA+CGG | - | chr1_4:5482212-5482231 | None:intergenic | 15.0% |
| !! | AAAACTAAAACATAAGAATT+TGG | + | chr1_4:5482638-5482657 | Msa0145760:intron | 15.0% |
| !! | GTTTATTCTCATAAAATTAA+AGG | - | chr1_4:5482775-5482794 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTGCTTATATTA+TGG | + | chr1_4:5482890-5482909 | Msa0145760:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATATTAT+GGG | + | chr1_4:5482891-5482910 | Msa0145760:intron | 15.0% |
| !! | TTTAGGTAAACAATAATTAT+TGG | + | chr1_4:5483182-5483201 | Msa0145760:intron | 15.0% |
| !!! | GAATAATAAGAAAATGTTTT+TGG | + | chr1_4:5484013-5484032 | Msa0145760:intron | 15.0% |
| !!! | CATATAATTAGTTTCAAAAT+TGG | + | chr1_4:5484366-5484385 | Msa0145760:intron | 15.0% |
| !! | TTTATCATCAATTTAAATTC+AGG | + | chr1_4:5485558-5485577 | Msa0145760:intron | 15.0% |
| !!! | TTAAAATATTATCGATTTGC+AGG | + | chr1_4:5480372-5480391 | Msa0145760:intron | 20.0% |
| !!! | TAAAATATTATCGATTTGCA+GGG | + | chr1_4:5480373-5480392 | Msa0145760:intron | 20.0% |
| !! | AATAAGTTTGTAAAGTAATC+AGG | + | chr1_4:5480768-5480787 | Msa0145760:intron | 20.0% |
| !!! | GGTTTTAGTAAGTATTTTTT+TGG | + | chr1_4:5480928-5480947 | Msa0145760:intron | 20.0% |
| !! | TTTAAGGGAAAAATAAATGA+GGG | + | chr1_4:5481423-5481442 | Msa0145760:intron | 20.0% |
| !! | ATAAATGATGATCTCATAAT+AGG | - | chr1_4:5481493-5481512 | None:intergenic | 20.0% |
| !!! | ACAAGATATTTTTTTTCAAC+TGG | - | chr1_4:5481560-5481579 | None:intergenic | 20.0% |
| !!! | TTCTTTGGAAAAAGTTTTAT+AGG | + | chr1_4:5482677-5482696 | Msa0145760:intron | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | + | chr1_4:5482702-5482721 | Msa0145760:intron | 20.0% |
| !!! | GAATAAACAAAAGTTTTTCT+TGG | + | chr1_4:5482787-5482806 | Msa0145760:intron | 20.0% |
| !!! | TGTCTTTTTTGCTTATATTT+TGG | + | chr1_4:5482854-5482873 | Msa0145760:intron | 20.0% |
| !!! | GTCTTTTTTGCTTATATTTT+GGG | + | chr1_4:5482855-5482874 | Msa0145760:intron | 20.0% |
| !! | AAAATGCTCAAAATTATTTG+AGG | - | chr1_4:5483004-5483023 | None:intergenic | 20.0% |
| !!! | TGTTCTTCAATTAATGTTTT+AGG | + | chr1_4:5483165-5483184 | Msa0145760:intron | 20.0% |
| !!! | TAAACCATTGACATTTTATT+TGG | - | chr1_4:5483230-5483249 | None:intergenic | 20.0% |
| !! | AAATAAAATGTCAATGGTTT+AGG | + | chr1_4:5483229-5483248 | Msa0145760:intron | 20.0% |
| !! | ATTGAAAACAAAAAGAAACA+AGG | - | chr1_4:5483941-5483960 | None:intergenic | 20.0% |
| !! | GGAAAACGATATTATAAAAT+GGG | - | chr1_4:5484229-5484248 | None:intergenic | 20.0% |
| !! | TGGAAAACGATATTATAAAA+TGG | - | chr1_4:5484230-5484249 | None:intergenic | 20.0% |
| !!! | TATAATATCGTTTTCCATAT+TGG | + | chr1_4:5484233-5484252 | Msa0145760:intron | 20.0% |
| !! | TATCAGTCAAAATGATATAA+CGG | - | chr1_4:5484310-5484329 | None:intergenic | 20.0% |
| !!! | ATTTTATAATTTGAACATGC+TGG | + | chr1_4:5484618-5484637 | Msa0145760:intron | 20.0% |
| !!! | TATTTTGATAACTATTTTCC+AGG | + | chr1_4:5485012-5485031 | Msa0145760:intron | 20.0% |
| !! | TATTATAAACTCTTCAGTAT+TGG | + | chr1_4:5485124-5485143 | Msa0145760:CDS | 20.0% |
| !! | TACACAATAAAGAAATGAAA+GGG | - | chr1_4:5485769-5485788 | None:intergenic | 20.0% |
| !! | TTACACAATAAAGAAATGAA+AGG | - | chr1_4:5485770-5485789 | None:intergenic | 20.0% |
| !! | TTTCTTTATTGTGTAACTAT+AGG | + | chr1_4:5485774-5485793 | Msa0145760:three_prime_UTR | 20.0% |
| !! | GTATTACAACATATTTCAAT+AGG | + | chr1_4:5485796-5485815 | Msa0145760:three_prime_UTR | 20.0% |
| !! | ATATGCAGTTTTTGTCATAT+TGG | + | chr1_4:5480185-5480204 | Msa0145760:intron | 25.0% |
| !! | TATGCAGTTTTTGTCATATT+GGG | + | chr1_4:5480186-5480205 | Msa0145760:intron | 25.0% |
| ! | CTTGATAAGAGTTTATATAG+AGG | + | chr1_4:5480243-5480262 | Msa0145760:intron | 25.0% |
| ! | AATTGACATGTTGAAATTTG+GGG | - | chr1_4:5480314-5480333 | None:intergenic | 25.0% |
| ! | CAATTGACATGTTGAAATTT+GGG | - | chr1_4:5480315-5480334 | None:intergenic | 25.0% |
| ! | TCAATTGACATGTTGAAATT+TGG | - | chr1_4:5480316-5480335 | None:intergenic | 25.0% |
| !! | TGAACTTAAGTAATTTGTAG+AGG | - | chr1_4:5480531-5480550 | None:intergenic | 25.0% |
| ! | TAAATAAGGTAATGAATTGC+AGG | - | chr1_4:5480637-5480656 | None:intergenic | 25.0% |
| ! | AAATGAATATATGATAGCTG+AGG | - | chr1_4:5481003-5481022 | None:intergenic | 25.0% |
| !! | TCAACTTTTATGAGTGAAAT+AGG | + | chr1_4:5481025-5481044 | Msa0145760:intron | 25.0% |
| ! | GTTTAATCATATTTGTATGC+TGG | - | chr1_4:5481185-5481204 | None:intergenic | 25.0% |
| ! | GTTTAAGGGAAAAATAAATG+AGG | + | chr1_4:5481422-5481441 | Msa0145760:intron | 25.0% |
| !!! | TTTTTCAACTGGAGTATTTA+GGG | - | chr1_4:5481549-5481568 | None:intergenic | 25.0% |
| !!! | TTTTTTCAACTGGAGTATTT+AGG | - | chr1_4:5481550-5481569 | None:intergenic | 25.0% |
| !! | AGAACAGTAGCAATTTTTAA+TGG | + | chr1_4:5481777-5481796 | Msa0145760:intron | 25.0% |
| ! | TGAAAAACATAGATGTTGTT+GGG | - | chr1_4:5481926-5481945 | None:intergenic | 25.0% |
| ! | ATGAAAAACATAGATGTTGT+TGG | - | chr1_4:5481927-5481946 | None:intergenic | 25.0% |
| !! | TTTTCATTTCAAACTTGAAG+TGG | + | chr1_4:5481940-5481959 | Msa0145760:intron | 25.0% |
| ! | TTTCATTTCAAACTTGAAGT+GGG | + | chr1_4:5481941-5481960 | Msa0145760:intron | 25.0% |
| !! | ATTAATATTAGTTCTCAACC+TGG | + | chr1_4:5482223-5482242 | Msa0145760:intron | 25.0% |
| !!! | ATATAAAGACTCTAAAGTTG+TGG | - | chr1_4:5482360-5482379 | Msa0145770:CDS | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | - | chr1_4:5482597-5482616 | None:intergenic | 25.0% |
| !!! | GTATAGTTTTGTGTTTTCTT+TGG | + | chr1_4:5482662-5482681 | Msa0145760:intron | 25.0% |
| !!! | AAACAATTTTCATTGGCTAT+TGG | + | chr1_4:5482709-5482728 | Msa0145760:intron | 25.0% |
| !! | TTTTTGCTTATATTATGGGA+CGG | + | chr1_4:5482895-5482914 | Msa0145760:intron | 25.0% |
| ! | TTTCAATAAGGGAATAACAA+TGG | - | chr1_4:5483065-5483084 | None:intergenic | 25.0% |
| ! | TACAACAATTGAGATTTCTT+TGG | - | chr1_4:5483266-5483285 | None:intergenic | 25.0% |
| ! | GAATCTATTTAAGTACTTTG+TGG | - | chr1_4:5483505-5483524 | None:intergenic | 25.0% |
| !!! | ACAGCATCGTTTTAATTAAA+CGG | - | chr1_4:5483848-5483867 | None:intergenic | 25.0% |
| ! | AAAAAGAAACAAGGAAATGT+TGG | - | chr1_4:5483932-5483951 | None:intergenic | 25.0% |
| !!! | TATATCATTTTGACTGATAC+TGG | + | chr1_4:5484311-5484330 | Msa0145760:intron | 25.0% |
| !!! | ATATCATTTTGACTGATACT+GGG | + | chr1_4:5484312-5484331 | Msa0145760:intron | 25.0% |
| ! | GAAACTAATTATATGCAGAA+CGG | - | chr1_4:5484361-5484380 | None:intergenic | 25.0% |
| ! | TTTATCTCTGGATACATAAT+AGG | - | chr1_4:5484481-5484500 | None:intergenic | 25.0% |
| !! | TTCAGCAACTTAATTTTATC+TGG | - | chr1_4:5484568-5484587 | None:intergenic | 25.0% |
| ! | GCAAACAAGAATATTAAGTT+TGG | - | chr1_4:5484653-5484672 | None:intergenic | 25.0% |
| !! | AGAGTTTAGTTCATATATCA+TGG | + | chr1_4:5484890-5484909 | Msa0145760:intron | 25.0% |
| !! | TTTTCAATCAAGAATTTAGC+TGG | - | chr1_4:5485236-5485255 | None:intergenic | 25.0% |
| ! | TGCTACATCAAAATTAACAA+TGG | + | chr1_4:5485290-5485309 | Msa0145760:CDS | 25.0% |
| ! | ACTAAGAAGTTCAAAATTGA+TGG | + | chr1_4:5485432-5485451 | Msa0145760:CDS | 25.0% |
| ! | CTATGATAAATTTCATGATC+TGG | + | chr1_4:5485476-5485495 | Msa0145760:CDS | 25.0% |
| ! | TGTTTATTTCCCTATTACTT+TGG | + | chr1_4:5485503-5485522 | Msa0145760:intron | 25.0% |
| ! | AAATTCAGTCCAAAGTAATA+GGG | - | chr1_4:5485515-5485534 | None:intergenic | 25.0% |
| ! | ATCATCAATTTAAATTCAGG+TGG | + | chr1_4:5485561-5485580 | Msa0145760:intron | 25.0% |
| ! | ACACAATAAAGAAATGAAAG+GGG | - | chr1_4:5485768-5485787 | None:intergenic | 25.0% |
| !! | TAATACAATGCTTTAGACAT+AGG | + | chr1_4:5485828-5485847 | Msa0145760:three_prime_UTR | 25.0% |
| ! | GAGAAATGAAGAGGATTTTA+GGG | - | chr1_4:5479166-5479185 | None:intergenic | 30.0% |
| ! | TGAGAAATGAAGAGGATTTT+AGG | - | chr1_4:5479167-5479186 | None:intergenic | 30.0% |
| TTATGGTGAGAATTTCAATG+CGG | + | chr1_4:5479463-5479482 | Msa0145760:CDS | 30.0% | |
| GTTGAATGGAAAGAAAGAAA+TGG | + | chr1_4:5479802-5479821 | Msa0145760:CDS | 30.0% | |
| TCCTGTTATTAGAGCAAATT+TGG | + | chr1_4:5479829-5479848 | Msa0145760:CDS | 30.0% | |
| ! | ACCAAATTTGCTCTAATAAC+AGG | - | chr1_4:5479833-5479852 | None:intergenic | 30.0% |
| AACTAAGCGATATATGAGAT+TGG | - | chr1_4:5479924-5479943 | None:intergenic | 30.0% | |
| GATAAGAGTTTATATAGAGG+AGG | + | chr1_4:5480246-5480265 | Msa0145760:intron | 30.0% | |
| TTGCAGGGTTATAAGATTAT+TGG | + | chr1_4:5480388-5480407 | Msa0145760:intron | 30.0% | |
| ! | TGCTACAAGCATTCATTTTA+CGG | + | chr1_4:5480472-5480491 | Msa0145760:CDS | 30.0% |
| !! | GTTTCATTAGCATTTGGTTT+TGG | + | chr1_4:5480552-5480571 | Msa0145760:intron | 30.0% |
| ! | GGTTTTCATTGGCATAAATA+AGG | - | chr1_4:5480651-5480670 | None:intergenic | 30.0% |
| !! | CTTGAGATTTAGGTTTTCAT+TGG | - | chr1_4:5480662-5480681 | None:intergenic | 30.0% |
| TGAAAACCTAAATCTCAAGA+TGG | + | chr1_4:5480663-5480682 | Msa0145760:intron | 30.0% | |
| ! | TGACAGTTTTTAATCGTTGA+TGG | + | chr1_4:5480723-5480742 | Msa0145760:intron | 30.0% |
| !!! | GTTTTTAAGTAACTTTGTGC+TGG | + | chr1_4:5480818-5480837 | Msa0145760:intron | 30.0% |
| ! | GCAACTTTTGATCATTTCAT+AGG | + | chr1_4:5480907-5480926 | Msa0145760:intron | 30.0% |
| !!! | TTTTTGGTGCTTGTTATAAG+TGG | + | chr1_4:5480944-5480963 | Msa0145760:intron | 30.0% |
| ! | CAAATAAATGTGTTTTCTGC+TGG | + | chr1_4:5481079-5481098 | Msa0145760:CDS | 30.0% |
| ATGCACACTTTCATAAAGTA+GGG | + | chr1_4:5481343-5481362 | Msa0145760:intron | 30.0% | |
| ! | AAACCCCTTTTCAAATTTCT+AGG | + | chr1_4:5481590-5481609 | Msa0145760:intron | 30.0% |
| TCCTCCTAGAAATTTGAAAA+GGG | - | chr1_4:5481597-5481616 | None:intergenic | 30.0% | |
| TGTTCACCTAAAACATCAAT+TGG | + | chr1_4:5481655-5481674 | Msa0145760:intron | 30.0% | |
| GTTCACCTAAAACATCAATT+GGG | + | chr1_4:5481656-5481675 | Msa0145760:intron | 30.0% | |
| ! | TTGTTCCCAATTGATGTTTT+AGG | - | chr1_4:5481664-5481683 | None:intergenic | 30.0% |
| ! | ACATCAATTGGGAACAATTT+TGG | + | chr1_4:5481667-5481686 | Msa0145760:intron | 30.0% |
| AGAGAATAGTCCTTACAATA+AGG | + | chr1_4:5481753-5481772 | Msa0145760:intron | 30.0% | |
| GAGAATAGTCCTTACAATAA+GGG | + | chr1_4:5481754-5481773 | Msa0145760:intron | 30.0% | |
| ATTTCCAACAACAGATAAGT+TGG | + | chr1_4:5481813-5481832 | Msa0145760:intron | 30.0% | |
| ATTTCCAACTTATCTGTTGT+TGG | - | chr1_4:5481820-5481839 | None:intergenic | 30.0% | |
| ATGCTCAAAATTATTTGACG+AGG | + | chr1_4:5481838-5481857 | Msa0145760:intron | 30.0% | |
| TGCTCAAAATTATTTGACGA+GGG | + | chr1_4:5481839-5481858 | Msa0145760:intron | 30.0% | |
| AAAATTATTTGACGAGGGTT+TGG | + | chr1_4:5481844-5481863 | Msa0145760:intron | 30.0% | |
| GAAGAAATAGAGAATTATCC+TGG | + | chr1_4:5481874-5481893 | Msa0145760:intron | 30.0% | |
| TTCATTTCAAACTTGAAGTG+GGG | + | chr1_4:5481942-5481961 | Msa0145760:intron | 30.0% | |
| ! | ATAGTACTGAAAACGGTAAT+TGG | - | chr1_4:5482205-5482224 | None:intergenic | 30.0% |
| ACACTTTCTTCTCTCAAAAT+CGG | + | chr1_4:5482385-5482404 | Msa0145760:intron | 30.0% | |
| TTTCATGTCAAACTTGAAGT+GGG | - | chr1_4:5482560-5482579 | None:intergenic | 30.0% | |
| ! | TTTTCATGTCAAACTTGAAG+TGG | - | chr1_4:5482561-5482580 | None:intergenic | 30.0% |
| !! | TTTTCATTGGCTATTGGTTA+TGG | + | chr1_4:5482715-5482734 | Msa0145760:intron | 30.0% |
| AATTATTTGAGGAGGGTTTA+AGG | - | chr1_4:5482993-5483012 | None:intergenic | 30.0% | |
| TGCTCAAAATTATTTGAGGA+GGG | - | chr1_4:5483000-5483019 | None:intergenic | 30.0% | |
| ATGCTCAAAATTATTTGAGG+AGG | - | chr1_4:5483001-5483020 | None:intergenic | 30.0% | |
| TCAAATGGTGCTTTCAATAA+GGG | - | chr1_4:5483076-5483095 | None:intergenic | 30.0% | |
| GAAATTGAGAGATTCTCAAA+TGG | - | chr1_4:5483091-5483110 | None:intergenic | 30.0% | |
| TGCTCCAAATAAAATGTCAA+TGG | + | chr1_4:5483223-5483242 | Msa0145760:intron | 30.0% | |
| ATAGTACTTTCTAATGCCTT+TGG | + | chr1_4:5483604-5483623 | Msa0145760:intron | 30.0% | |
| !!! | CAGCATCGTTTTAATTAAAC+GGG | - | chr1_4:5483847-5483866 | None:intergenic | 30.0% |
| !!! | GTTGGACGTGTTTTATTTTT+GGG | - | chr1_4:5483882-5483901 | None:intergenic | 30.0% |
| ! | GCTCATTTAACTCTTTTTGT+AGG | + | chr1_4:5484388-5484407 | Msa0145760:intron | 30.0% |
| TGCATTTGTAACTAGAAAAG+TGG | - | chr1_4:5484539-5484558 | None:intergenic | 30.0% | |
| ACAAATAATGCATTTCAGCT+AGG | - | chr1_4:5484866-5484885 | None:intergenic | 30.0% | |
| TGATAAATTTCATGATCTGG+TGG | + | chr1_4:5485479-5485498 | Msa0145760:intron | 30.0% | |
| GATAAATTTCATGATCTGGT+GGG | + | chr1_4:5485480-5485499 | Msa0145760:intron | 30.0% | |
| CAAATTCAGTCCAAAGTAAT+AGG | - | chr1_4:5485516-5485535 | None:intergenic | 30.0% | |
| CTATTACTTTGGACTGAATT+TGG | + | chr1_4:5485514-5485533 | Msa0145760:intron | 30.0% | |
| ! | TTTTGACAGCAAAGATTACA+TGG | + | chr1_4:5485597-5485616 | Msa0145760:CDS | 30.0% |
| AAAGAATCAGGTTAGAAGTT+AGG | + | chr1_4:5485718-5485737 | Msa0145760:exon | 30.0% | |
| TAAAGAAATGAAAGGGGAAA+TGG | - | chr1_4:5485762-5485781 | None:intergenic | 30.0% | |
| ! | TTGCTAGCATAGTAGTATTT+TGG | + | chr1_4:5486029-5486048 | Msa0145760:three_prime_UTR | 30.0% |
| !!! | TAGTATTTTGGTTTGAAGAG+AGG | + | chr1_4:5486041-5486060 | Msa0145760:three_prime_UTR | 30.0% |
| AGGGAAAATGAAAACGAAGA+GGG | - | chr1_4:5478926-5478945 | None:intergenic | 35.0% | |
| TGATAAGAATGGCATGGTAA+TGG | - | chr1_4:5479021-5479040 | None:intergenic | 35.0% | |
| GGATTTGTAGAAGAAGTAGA+AGG | - | chr1_4:5479087-5479106 | None:intergenic | 35.0% | |
| !!! | AGCTTAGGGTTAGTTGTTTT+AGG | - | chr1_4:5479124-5479143 | None:intergenic | 35.0% |
| !!! | TGAAGAGGATTTTAGGGTTA+GGG | - | chr1_4:5479160-5479179 | None:intergenic | 35.0% |
| !!! | ATGAAGAGGATTTTAGGGTT+AGG | - | chr1_4:5479161-5479180 | None:intergenic | 35.0% |
| !! | TGTTGGTTTGAGAAATGAAG+AGG | - | chr1_4:5479175-5479194 | None:intergenic | 35.0% |
| AGTATAAATTCTTCGCCGAT+TGG | + | chr1_4:5479354-5479373 | Msa0145760:CDS | 35.0% | |
| TTTGTCGAAGTGTAGATTTG+CGG | + | chr1_4:5479418-5479437 | Msa0145760:CDS | 35.0% | |
| AAGTGTAGATTTGCGGTATT+CGG | + | chr1_4:5479425-5479444 | Msa0145760:CDS | 35.0% | |
| TTGGTAAGGAGATTGTGAAA+CGG | + | chr1_4:5479486-5479505 | Msa0145760:CDS | 35.0% | |
| AAGGTTGTTGGAATACTGAA+AGG | + | chr1_4:5479602-5479621 | Msa0145760:CDS | 35.0% | |
| !! | ATACTGAAAGGTGTTGATGA+TGG | + | chr1_4:5479614-5479633 | Msa0145760:CDS | 35.0% |
| GTTGATCTTGAAGATATTGC+CGG | + | chr1_4:5479728-5479747 | Msa0145760:CDS | 35.0% | |
| ! | CAGAAGAGCTATTGTGATTT+TGG | + | chr1_4:5479978-5479997 | Msa0145760:intron | 35.0% |
| AGTGATATTGCTTGCTTACT+TGG | + | chr1_4:5480007-5480026 | Msa0145760:intron | 35.0% | |
| TTGCTTACTTGGTACTTGTT+TGG | + | chr1_4:5480018-5480037 | Msa0145760:intron | 35.0% | |
| TCATAATTCGGACAAACTCA+CGG | - | chr1_4:5480049-5480068 | None:intergenic | 35.0% | |
| ! | TGGATTTTGCAAGATCACTA+TGG | + | chr1_4:5480106-5480125 | Msa0145760:intron | 35.0% |
| ! | GAGTCTTATCTATCTGATGT+GGG | - | chr1_4:5480224-5480243 | None:intergenic | 35.0% |
| ! | AGAGTCTTATCTATCTGATG+TGG | - | chr1_4:5480225-5480244 | None:intergenic | 35.0% |
| CTAACTCAACCTTACAAAAC+CGG | - | chr1_4:5480290-5480309 | None:intergenic | 35.0% | |
| !! | AAGATTATTGGTTCACACAG+TGG | + | chr1_4:5480400-5480419 | Msa0145760:CDS | 35.0% |
| TTTACGGAATTGAGAGTCAT+AGG | + | chr1_4:5480488-5480507 | Msa0145760:CDS | 35.0% | |
| GTTCACGTTTCATTAGCATT+TGG | + | chr1_4:5480546-5480565 | Msa0145760:intron | 35.0% | |
| !!! | TCATTAGCATTTGGTTTTGG+TGG | + | chr1_4:5480555-5480574 | Msa0145760:intron | 35.0% |
| TTATGAGTGAAATAGGTGCA+TGG | + | chr1_4:5481032-5481051 | Msa0145760:intron | 35.0% | |
| ! | ATAAATGTGTTTTCTGCTGG+AGG | + | chr1_4:5481082-5481101 | Msa0145760:CDS | 35.0% |
| AAATCCAGTAGCGAAAAGTT+GGG | + | chr1_4:5481113-5481132 | Msa0145760:CDS | 35.0% | |
| GCAGAATTTACGATCTCTAT+TGG | - | chr1_4:5481156-5481175 | None:intergenic | 35.0% | |
| AAACAAATGAAAGGAGTTCC+TGG | + | chr1_4:5481201-5481220 | Msa0145760:CDS | 35.0% | |
| CATGCACACTTTCATAAAGT+AGG | + | chr1_4:5481342-5481361 | Msa0145760:intron | 35.0% | |
| AAGTAGGGTAAGTTTCATAC+CGG | + | chr1_4:5481358-5481377 | Msa0145760:intron | 35.0% | |
| ! | AGATTATAATTTGTGCGTGC+AGG | + | chr1_4:5481398-5481417 | Msa0145760:intron | 35.0% |
| TGAAAAGGGGTTTGTCTTTA+GGG | - | chr1_4:5481583-5481602 | None:intergenic | 35.0% | |
| TTGAAAAGGGGTTTGTCTTT+AGG | - | chr1_4:5481584-5481603 | None:intergenic | 35.0% | |
| CCTCCTAGAAATTTGAAAAG+GGG | - | chr1_4:5481596-5481615 | None:intergenic | 35.0% | |
| GTCCTCCTAGAAATTTGAAA+AGG | - | chr1_4:5481598-5481617 | None:intergenic | 35.0% | |
| TGGAACATCTATGCATGAAA+TGG | + | chr1_4:5481687-5481706 | Msa0145760:intron | 35.0% | |
| TACTGTTCTCCCTTATTGTA+AGG | - | chr1_4:5481766-5481785 | None:intergenic | 35.0% | |
| !! | ACACGATTTTGAGAGAAGAA+AGG | + | chr1_4:5482111-5482130 | Msa0145760:intron | 35.0% |
| !! | CACGATTTTGAGAGAAGAAA+GGG | + | chr1_4:5482112-5482131 | Msa0145760:intron | 35.0% |
| TTCACTTCTACGAGAATTGA+TGG | - | chr1_4:5482266-5482285 | Msa0145770:CDS | 35.0% | |
| CACTTTCTTCTCTCAAAATC+GGG | + | chr1_4:5482386-5482405 | Msa0145760:intron | 35.0% | |
| TTCATGTCAAACTTGAAGTG+GGG | - | chr1_4:5482559-5482578 | None:intergenic | 35.0% | |
| CTCAAATGGTGCTTTCAATA+AGG | - | chr1_4:5483077-5483096 | None:intergenic | 35.0% | |
| TCATTTATGCAGAGAGCTAT+GGG | - | chr1_4:5483371-5483390 | None:intergenic | 35.0% | |
| TTCATTTATGCAGAGAGCTA+TGG | - | chr1_4:5483372-5483391 | None:intergenic | 35.0% | |
| GAAAACACATGTTTGCAATC+AGG | + | chr1_4:5483403-5483422 | Msa0145760:intron | 35.0% | |
| !! | TTCATCGTTTTTGCGACTTT+TGG | - | chr1_4:5483761-5483780 | None:intergenic | 35.0% |
| CATAACAAGTACAGAAACGA+TGG | - | chr1_4:5483793-5483812 | None:intergenic | 35.0% | |
| !!! | CGTTGGACGTGTTTTATTTT+TGG | - | chr1_4:5483883-5483902 | None:intergenic | 35.0% |
| CAAAATCCTAGACAAGATCA+GGG | - | chr1_4:5484199-5484218 | None:intergenic | 35.0% | |
| TCAAAATCCTAGACAAGATC+AGG | - | chr1_4:5484200-5484219 | None:intergenic | 35.0% | |
| TCAAAATGATATAACGGTGC+TGG | - | chr1_4:5484304-5484323 | None:intergenic | 35.0% | |
| CTAATTATATGCAGAACGGT+GGG | - | chr1_4:5484357-5484376 | None:intergenic | 35.0% | |
| ACTAATTATATGCAGAACGG+TGG | - | chr1_4:5484358-5484377 | None:intergenic | 35.0% | |
| CATTGTGCATTATCTCTTGT+TGG | + | chr1_4:5484451-5484470 | Msa0145760:CDS | 35.0% | |
| TCCAGAGATAAATACACTTG+TGG | + | chr1_4:5484489-5484508 | Msa0145760:CDS | 35.0% | |
| TCCACAAGTGTATTTATCTC+TGG | - | chr1_4:5484493-5484512 | None:intergenic | 35.0% | |
| ! | TTCTGAAAACCTCAAAACCT+GGG | - | chr1_4:5484599-5484618 | None:intergenic | 35.0% |
| ! | ATTCTGAAAACCTCAAAACC+TGG | - | chr1_4:5484600-5484619 | None:intergenic | 35.0% |
| TTATATGTCAGTGTAGATGC+CGG | + | chr1_4:5484682-5484701 | Msa0145760:CDS | 35.0% | |
| ACATAGACAATGTGATCAAG+AGG | - | chr1_4:5484993-5485012 | None:intergenic | 35.0% | |
| ACCCTTGATTTCAATGAAGT+CGG | - | chr1_4:5485155-5485174 | None:intergenic | 35.0% | |
| !! | ATCAAGGGTGTTACATATTG+TGG | + | chr1_4:5485166-5485185 | Msa0145760:CDS | 35.0% |
| AAGAATTTAGCTGGACTAAG+GGG | - | chr1_4:5485227-5485246 | None:intergenic | 35.0% | |
| CAAGAATTTAGCTGGACTAA+GGG | - | chr1_4:5485228-5485247 | None:intergenic | 35.0% | |
| TCAAGAATTTAGCTGGACTA+AGG | - | chr1_4:5485229-5485248 | None:intergenic | 35.0% | |
| AGTTCATTGTCATTCGAAGA+TGG | - | chr1_4:5485259-5485278 | None:intergenic | 35.0% | |
| AATGACAATGAACTCTTCTC+AGG | + | chr1_4:5485265-5485284 | Msa0145760:intron | 35.0% | |
| TAACAATGGAAAATGTCCCT+TGG | + | chr1_4:5485304-5485323 | Msa0145760:CDS | 35.0% | |
| !! | ACTTCTTAGTTTTTGCCAAG+AGG | - | chr1_4:5485422-5485441 | None:intergenic | 35.0% |
| ATTTAAATTCAGGTGGCTTC+TGG | + | chr1_4:5485568-5485587 | Msa0145760:intron | 35.0% | |
| ACTTCTAACCTGATTCTTTG+CGG | - | chr1_4:5485717-5485736 | None:intergenic | 35.0% | |
| ACATTGGGACTTAAATACAC+TGG | - | chr1_4:5485864-5485883 | None:intergenic | 35.0% | |
| ! | ACGCAATGCTATTTATTGCA+AGG | - | chr1_4:5485987-5486006 | None:intergenic | 35.0% |
| TTGAAGAGAGGTAGATAAAG+TGG | + | chr1_4:5486053-5486072 | Msa0145760:three_prime_UTR | 35.0% | |
| !!! | AGGTTTTGAAGTTAGAAGCC+CGG | - | chr1_4:5478883-5478902 | None:intergenic | 40.0% |
| GAGGGAAAATGAAAACGAAG+AGG | - | chr1_4:5478927-5478946 | None:intergenic | 40.0% | |
| ! | TAATGGTGATTCGATGATGG+TGG | - | chr1_4:5479004-5479023 | None:intergenic | 40.0% |
| !! | TGGTAATGGTGATTCGATGA+TGG | - | chr1_4:5479007-5479026 | None:intergenic | 40.0% |
| !! | TGGTACTGATAAGAATGGCA+TGG | - | chr1_4:5479027-5479046 | None:intergenic | 40.0% |
| GTAGAAGAAGTAGAAGGTTG+TGG | - | chr1_4:5479081-5479100 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTAGGCTTCGTAAG+CGG | - | chr1_4:5479112-5479131 | None:intergenic | 40.0% |
| !!! | AGGATTTTAGGGTTAGGGTT+GGG | - | chr1_4:5479155-5479174 | None:intergenic | 40.0% |
| !! | ATAAGGAGAAGCGTTTCCTT+GGG | - | chr1_4:5479296-5479315 | None:intergenic | 40.0% |
| TCGGCGAAGAATTTATACTC+CGG | - | chr1_4:5479353-5479372 | None:intergenic | 40.0% | |
| !!! | AGTTCGGAGGATTTTAGAGT+TGG | + | chr1_4:5479386-5479405 | Msa0145760:CDS | 40.0% |
| ! | GAATTTCAATGCGGTTGGTA+AGG | + | chr1_4:5479472-5479491 | Msa0145760:CDS | 40.0% |
| !! | TGGATGAGGTTTTTGAGAAG+TGG | + | chr1_4:5479573-5479592 | Msa0145760:CDS | 40.0% |
| !! | AGGTTTTTGAGAAGTGGTGT+GGG | + | chr1_4:5479579-5479598 | Msa0145760:CDS | 40.0% |
| !! | TGTTGATGATGGTGGTGATT+TGG | + | chr1_4:5479625-5479644 | Msa0145760:CDS | 40.0% |
| TGATGAAGAAGAGTCTGATG+AGG | + | chr1_4:5479682-5479701 | Msa0145760:CDS | 40.0% | |
| ! | GAGAGTAATGGGAAGTTGAA+TGG | + | chr1_4:5479788-5479807 | Msa0145760:CDS | 40.0% |
| ! | TAGAGCAAATTTGGTGAAGC+AGG | + | chr1_4:5479838-5479857 | Msa0145760:CDS | 40.0% |
| ! | ATTTTGCGAAAGCTACACTC+TGG | + | chr1_4:5480081-5480100 | Msa0145760:intron | 40.0% |
| ATCTATCTGATGTGGGACTT+GGG | - | chr1_4:5480217-5480236 | None:intergenic | 40.0% | |
| TATCTATCTGATGTGGGACT+TGG | - | chr1_4:5480218-5480237 | None:intergenic | 40.0% | |
| ! | GTGGTGTCAAGATTTGTAGA+TGG | + | chr1_4:5480419-5480438 | Msa0145760:CDS | 40.0% |
| CAAGCTCCATCTTGAGATTT+AGG | - | chr1_4:5480672-5480691 | None:intergenic | 40.0% | |
| TTCGATGTACGTTTCATCGA+TGG | + | chr1_4:5480698-5480717 | Msa0145760:intron | 40.0% | |
| ! | CTTTGTGCTGGTATTTGACA+TGG | + | chr1_4:5480830-5480849 | Msa0145760:intron | 40.0% |
| GGCTTAGAAGAAGAATGTTC+TGG | + | chr1_4:5480851-5480870 | Msa0145760:intron | 40.0% | |
| TATTTGCACATGCCAAGCTA+GGG | - | chr1_4:5481065-5481084 | None:intergenic | 40.0% | |
| TTATTTGCACATGCCAAGCT+AGG | - | chr1_4:5481066-5481085 | None:intergenic | 40.0% | |
| CAAATCCAGTAGCGAAAAGT+TGG | + | chr1_4:5481112-5481131 | Msa0145760:CDS | 40.0% | |
| !! | ACACATTGTTGTCAGGTTGA+TGG | + | chr1_4:5481271-5481290 | Msa0145760:intron | 40.0% |
| ! | ACTGGAGTATTTAGGGAAAG+AGG | - | chr1_4:5481542-5481561 | None:intergenic | 40.0% |
| !! | CCCCTTTTCAAATTTCTAGG+AGG | + | chr1_4:5481593-5481612 | Msa0145760:intron | 40.0% |
| GTTGAAGAAAGCGAGACAAA+TGG | + | chr1_4:5481896-5481915 | Msa0145760:intron | 40.0% | |
| ! | GTTAGACATTGAAGCACTAG+CGG | - | chr1_4:5482012-5482031 | None:intergenic | 40.0% |
| GTCTAACTCCAACGAATCAA+CGG | + | chr1_4:5482025-5482044 | Msa0145760:intron | 40.0% | |
| AGTCGTAGAATCAGAGAATG+AGG | + | chr1_4:5482158-5482177 | Msa0145760:intron | 40.0% | |
| ACTTCTACGAGAATTGATGG+CGG | - | chr1_4:5482263-5482282 | Msa0145770:CDS | 40.0% | |
| AGTTGTGGAATCAGAGAATG+AGG | - | chr1_4:5482345-5482364 | Msa0145770:CDS | 40.0% | |
| GTCTTTCATTCTATCTGTGG+CGG | + | chr1_4:5482408-5482427 | Msa0145760:intron | 40.0% | |
| !! | AGCACCGACAATATCGATAA+TGG | + | chr1_4:5482501-5482520 | Msa0145760:intron | 40.0% |
| ! | ACCGACAATATCGATAATGG+CGG | + | chr1_4:5482504-5482523 | Msa0145760:intron | 40.0% |
| ! | TGCTTATAATTTGGGACGGA+GGG | - | chr1_4:5482593-5482612 | None:intergenic | 40.0% |
| ! | TTGCTTATAATTTGGGACGG+AGG | - | chr1_4:5482594-5482613 | None:intergenic | 40.0% |
| TTGCTTATATTATGGGACGG+AGG | + | chr1_4:5482898-5482917 | Msa0145760:intron | 40.0% | |
| TGCTTATATTATGGGACGGA+GGG | + | chr1_4:5482899-5482918 | Msa0145760:intron | 40.0% | |
| ! | TTGACTCGCTTTCTTCAATC+TGG | + | chr1_4:5482944-5482963 | Msa0145760:intron | 40.0% |
| TTGTTTACCTCCTCTCAGAT+GGG | - | chr1_4:5483330-5483349 | None:intergenic | 40.0% | |
| ATTGTTTACCTCCTCTCAGA+TGG | - | chr1_4:5483331-5483350 | None:intergenic | 40.0% | |
| AGAATTCAGCACATCAGAGA+TGG | - | chr1_4:5483447-5483466 | None:intergenic | 40.0% | |
| ATCTCTGATGTGCTGAATTC+TGG | + | chr1_4:5483446-5483465 | Msa0145760:intron | 40.0% | |
| AGTACTTTGTGGATAGTGAC+AGG | - | chr1_4:5483494-5483513 | None:intergenic | 40.0% | |
| ATGCCTTTGGATTTGTGTGA+TGG | + | chr1_4:5483617-5483636 | Msa0145760:intron | 40.0% | |
| ATGCCATCACACAAATCCAA+AGG | - | chr1_4:5483623-5483642 | None:intergenic | 40.0% | |
| !!! | GATCACGATTTTGACTACCT+AGG | - | chr1_4:5483648-5483667 | None:intergenic | 40.0% |
| AAAATCGTGATCCAACTCGT+AGG | + | chr1_4:5483656-5483675 | Msa0145760:intron | 40.0% | |
| !! | ATCGTTTTTGCGACTTTTGG+CGG | - | chr1_4:5483758-5483777 | None:intergenic | 40.0% |
| GCAACTTTGCAATGCCAATA+TGG | - | chr1_4:5484250-5484269 | None:intergenic | 40.0% | |
| !!! | TCATTTTGACTGATACTGGG+AGG | + | chr1_4:5484315-5484334 | Msa0145760:intron | 40.0% |
| ! | TCTTTTTGTAGGAGTCACCT+CGG | + | chr1_4:5484399-5484418 | Msa0145760:intron | 40.0% |
| TTGTGGATGAGTTGCACAAA+AGG | + | chr1_4:5484506-5484525 | Msa0145760:CDS | 40.0% | |
| AACCTCAAAACCTGGGTAAT+AGG | - | chr1_4:5484592-5484611 | None:intergenic | 40.0% | |
| CTTAAGAGAGTCCTTTGTTC+CGG | - | chr1_4:5484704-5484723 | None:intergenic | 40.0% | |
| ! | ACCACTCTTTGGAGATTTCT+GGG | + | chr1_4:5484735-5484754 | Msa0145760:CDS | 40.0% |
| CATGATCACCATCTGAAGAA+GGG | + | chr1_4:5484924-5484943 | Msa0145760:intron | 40.0% | |
| ATGATCACCATCTGAAGAAG+GGG | + | chr1_4:5484925-5484944 | Msa0145760:intron | 40.0% | |
| ! | TTTTTCCTTCAGAGCAGTCA+AGG | - | chr1_4:5485041-5485060 | None:intergenic | 40.0% |
| AGCATTCCATCCTTTCACAA+GGG | - | chr1_4:5485089-5485108 | None:intergenic | 40.0% | |
| ACCCGACTTCATTGAAATCA+AGG | + | chr1_4:5485150-5485169 | Msa0145760:CDS | 40.0% | |
| CCCTTGATTTCAATGAAGTC+GGG | - | chr1_4:5485154-5485173 | None:intergenic | 40.0% | |
| CCCGACTTCATTGAAATCAA+GGG | + | chr1_4:5485151-5485170 | Msa0145760:CDS | 40.0% | |
| TAGAGATAGAGAGAGAAGAG+GGG | - | chr1_4:5485204-5485223 | None:intergenic | 40.0% | |
| GTAGAGATAGAGAGAGAAGA+GGG | - | chr1_4:5485205-5485224 | None:intergenic | 40.0% | |
| ! | AGTTCAAAATTGATGGCCAG+TGG | + | chr1_4:5485439-5485458 | Msa0145760:CDS | 40.0% |
| AGTCTATCCATGTATACCAC+TGG | - | chr1_4:5485458-5485477 | None:intergenic | 40.0% | |
| ATCCAGGACAGTTGAGATAT+AGG | + | chr1_4:5485668-5485687 | Msa0145760:CDS | 40.0% | |
| TTCCTATATCTCAACTGTCC+TGG | - | chr1_4:5485673-5485692 | None:intergenic | 40.0% | |
| AGGTTAGAAGTTAGGCCTTT+GGG | + | chr1_4:5485726-5485745 | Msa0145760:exon | 40.0% | |
| ATGAAAGGGGAAATGGATGT+TGG | - | chr1_4:5485755-5485774 | None:intergenic | 40.0% | |
| CCTCGAATTGGGAAAACATT+GGG | - | chr1_4:5485879-5485898 | None:intergenic | 40.0% | |
| TTCCTCAATTGCCTCGAATT+GGG | - | chr1_4:5485890-5485909 | None:intergenic | 40.0% | |
| TTTCCTCAATTGCCTCGAAT+TGG | - | chr1_4:5485891-5485910 | None:intergenic | 40.0% | |
| !! | TTGTTTTGTTACGGCCTGGT+GGG | - | chr1_4:5478860-5478879 | None:intergenic | 45.0% |
| !! | GAAGCCCGGTTGTTTTGTTA+CGG | - | chr1_4:5478869-5478888 | None:intergenic | 45.0% |
| !! | AGTGCTGTTTAGTGGGCTTT+AGG | - | chr1_4:5478903-5478922 | None:intergenic | 45.0% |
| !! | AAGAGGGAGTGCTGTTTAGT+GGG | - | chr1_4:5478910-5478929 | None:intergenic | 45.0% |
| ! | CGTTTTCATTTTCCCTCCCA+CGG | + | chr1_4:5478930-5478949 | Msa0145760:five_prime_UTR | 45.0% |
| !! | CGAGCTGGTACTGATAAGAA+TGG | - | chr1_4:5479032-5479051 | None:intergenic | 45.0% |
| GAAGAAGTAGAAGGTTGTGG+CGG | - | chr1_4:5479078-5479097 | None:intergenic | 45.0% | |
| !!! | GGATTTTAGGGTTAGGGTTG+GGG | - | chr1_4:5479154-5479173 | None:intergenic | 45.0% |
| !!! | GAGGATTTTAGGGTTAGGGT+TGG | - | chr1_4:5479156-5479175 | None:intergenic | 45.0% |
| !!! | AGAGAGGGTTTTGGAAGTGT+TGG | - | chr1_4:5479192-5479211 | None:intergenic | 45.0% |
| ! | GGTTGTTTGAGGTGAGGAAA+CGG | - | chr1_4:5479226-5479245 | None:intergenic | 45.0% |
| ! | ATGCAAGGTTGTTTGAGGTG+AGG | - | chr1_4:5479232-5479251 | None:intergenic | 45.0% |
| GTCGAATGCAAGGTTGTTTG+AGG | - | chr1_4:5479237-5479256 | None:intergenic | 45.0% | |
| CATCGATGATGTCGAATGCA+AGG | - | chr1_4:5479247-5479266 | None:intergenic | 45.0% | |
| CTTGCATTCGACATCATCGA+TGG | + | chr1_4:5479245-5479264 | Msa0145760:CDS | 45.0% | |
| !! | TAAGGAGAAGCGTTTCCTTG+GGG | - | chr1_4:5479295-5479314 | None:intergenic | 45.0% |
| !! | GATAAGGAGAAGCGTTTCCT+TGG | - | chr1_4:5479297-5479316 | None:intergenic | 45.0% |
| TCCTTATCGTTGCTTCCACT+TGG | + | chr1_4:5479309-5479328 | Msa0145760:CDS | 45.0% | |
| CCTTATCGTTGCTTCCACTT+GGG | + | chr1_4:5479310-5479329 | Msa0145760:CDS | 45.0% | |
| AAGAATTTATACTCCGGCGG+TGG | - | chr1_4:5479347-5479366 | None:intergenic | 45.0% | |
| GCGAAGAATTTATACTCCGG+CGG | - | chr1_4:5479350-5479369 | None:intergenic | 45.0% | |
| !! | AGATTTGCGGTATTCGGTGT+CGG | + | chr1_4:5479431-5479450 | Msa0145760:CDS | 45.0% |
| GGTGAGAATTTCAATGCGGT+TGG | + | chr1_4:5479467-5479486 | Msa0145760:CDS | 45.0% | |
| GGAGATTGTGAAACGGATGA+AGG | + | chr1_4:5479493-5479512 | Msa0145760:CDS | 45.0% | |
| ! | TGGTAACGAGATGATTCCGT+TGG | + | chr1_4:5479523-5479542 | Msa0145760:CDS | 45.0% |
| GGTAACGAGATGATTCCGTT+GGG | + | chr1_4:5479524-5479543 | Msa0145760:CDS | 45.0% | |
| GTAACGAGATGATTCCGTTG+GGG | + | chr1_4:5479525-5479544 | Msa0145760:CDS | 45.0% | |
| TAACGAGATGATTCCGTTGG+GGG | + | chr1_4:5479526-5479545 | Msa0145760:CDS | 45.0% | |
| !! | GAGGTTTTTGAGAAGTGGTG+TGG | + | chr1_4:5479578-5479597 | Msa0145760:CDS | 45.0% |
| !! | TTTTGAGAAGTGGTGTGGGA+AGG | + | chr1_4:5479583-5479602 | Msa0145760:CDS | 45.0% |
| !! | CTGAAAGGTGTTGATGATGG+TGG | + | chr1_4:5479617-5479636 | Msa0145760:CDS | 45.0% |
| ! | TGGTGATTTGGAGAATGCTG+AGG | + | chr1_4:5479637-5479656 | Msa0145760:CDS | 45.0% |
| ! | TGATTTGGAGAATGCTGAGG+AGG | + | chr1_4:5479640-5479659 | Msa0145760:CDS | 45.0% |
| TGAAGAAGAGTCTGATGAGG+AGG | + | chr1_4:5479685-5479704 | Msa0145760:CDS | 45.0% | |
| CTACGGTGAAGGAGAGTAAT+GGG | + | chr1_4:5479777-5479796 | Msa0145760:CDS | 45.0% | |
| GTCCGAATTATGATGACCCA+CGG | + | chr1_4:5480056-5480075 | Msa0145760:intron | 45.0% | |
| CACCGTGGGTCATCATAATT+CGG | - | chr1_4:5480061-5480080 | None:intergenic | 45.0% | |
| AGCTTTCGCAAAATCACCGT+GGG | - | chr1_4:5480075-5480094 | None:intergenic | 45.0% | |
| TAGCTTTCGCAAAATCACCG+TGG | - | chr1_4:5480076-5480095 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr1_4:5480281-5480300 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr1_4:5480278-5480297 | Msa0145760:intron | 45.0% |
| TCGTTTATGTGTCGTGCTAG+CGG | + | chr1_4:5480586-5480605 | Msa0145760:intron | 45.0% | |
| TGAGTGAAATAGGTGCATGG+AGG | + | chr1_4:5481035-5481054 | Msa0145760:intron | 45.0% | |
| ATTTGCACATGCCAAGCTAG+GGG | - | chr1_4:5481064-5481083 | None:intergenic | 45.0% | |
| AGTAGCGAAAAGTTGGGTGT+GGG | + | chr1_4:5481119-5481138 | Msa0145760:CDS | 45.0% | |
| TTTGTGCGTGCAGGAGTTTA+AGG | + | chr1_4:5481407-5481426 | Msa0145760:intron | 45.0% | |
| TTGTGCGTGCAGGAGTTTAA+GGG | + | chr1_4:5481408-5481427 | Msa0145760:intron | 45.0% | |
| TTGTCTCGCTTTCTTCAACC+AGG | - | chr1_4:5481895-5481914 | None:intergenic | 45.0% | |
| !! | AGCACTAGCGGTATCGATAA+CGG | - | chr1_4:5482000-5482019 | None:intergenic | 45.0% |
| GCGGCAATAATGTTTCATCC+AGG | - | chr1_4:5482244-5482263 | Msa0145770:CDS | 45.0% | |
| ACGTTTCGCATTACCAGAGA+CGG | + | chr1_4:5482289-5482308 | Msa0145760:intron | 45.0% | |
| GCATTACCAGAGACGGTAAT+CGG | + | chr1_4:5482296-5482315 | Msa0145760:intron | 45.0% | |
| CGGGTCTTTCATTCTATCTG+TGG | + | chr1_4:5482405-5482424 | Msa0145760:intron | 45.0% | |
| CAACGAATCAGCAAAGATCG+TGG | - | chr1_4:5482467-5482486 | Msa0145770:CDS | 45.0% | |
| !! | CACGATCTTTGCTGATTCGT+TGG | + | chr1_4:5482465-5482484 | Msa0145760:intron | 45.0% |
| GCCGCCATTATCGATATTGT+CGG | - | chr1_4:5482508-5482527 | Msa0145770:CDS | 45.0% | |
| GTTGTAGCTCTCTACAACAC+AGG | + | chr1_4:5483280-5483299 | Msa0145760:intron | 45.0% | |
| TGATGTGCTGAATTCTGGTC+TGG | + | chr1_4:5483451-5483470 | Msa0145760:intron | 45.0% | |
| TTTGTGTGATGGCATGACCT+AGG | + | chr1_4:5483628-5483647 | Msa0145760:intron | 45.0% | |
| AATCGTACGATCCTACGAGT+TGG | - | chr1_4:5483670-5483689 | None:intergenic | 45.0% | |
| ATAAAACACGTCCAACGCTG+TGG | + | chr1_4:5483886-5483905 | Msa0145760:intron | 45.0% | |
| CAAATAGGAAACCACAGCGT+TGG | - | chr1_4:5483900-5483919 | None:intergenic | 45.0% | |
| TGTTGGCGTGTAGCACAAAT+AGG | - | chr1_4:5483915-5483934 | None:intergenic | 45.0% | |
| ATCCTTCCCTGATCTTGTCT+AGG | + | chr1_4:5484190-5484209 | Msa0145760:intron | 45.0% | |
| ATCCTAGACAAGATCAGGGA+AGG | - | chr1_4:5484195-5484214 | None:intergenic | 45.0% | |
| ! | TAACTGAAGGCATGACACCA+CGG | + | chr1_4:5484428-5484447 | Msa0145760:CDS | 45.0% |
| AGAGATAATGCACAATGCCG+TGG | - | chr1_4:5484448-5484467 | None:intergenic | 45.0% | |
| TGGATGAGTTGCACAAAAGG+AGG | + | chr1_4:5484509-5484528 | Msa0145760:CDS | 45.0% | |
| ! | AGCCTATTACCCAGGTTTTG+AGG | + | chr1_4:5484587-5484606 | Msa0145760:intron | 45.0% |
| CGGAACAAAGGACTCTCTTA+AGG | + | chr1_4:5484702-5484721 | Msa0145760:CDS | 45.0% | |
| GCAATCGATAGACCACTCTT+TGG | + | chr1_4:5484724-5484743 | Msa0145760:CDS | 45.0% | |
| ! | GACCACTCTTTGGAGATTTC+TGG | + | chr1_4:5484734-5484753 | Msa0145760:CDS | 45.0% |
| TCCCAGAAATCTCCAAAGAG+TGG | - | chr1_4:5484739-5484758 | None:intergenic | 45.0% | |
| GCATGATCACCATCTGAAGA+AGG | + | chr1_4:5484923-5484942 | Msa0145760:intron | 45.0% | |
| CAGCATTCCATCCTTTCACA+AGG | - | chr1_4:5485090-5485109 | None:intergenic | 45.0% | |
| AGAGATAGAGAGAGAAGAGG+GGG | - | chr1_4:5485203-5485222 | None:intergenic | 45.0% | |
| GGTAGAGATAGAGAGAGAAG+AGG | - | chr1_4:5485206-5485225 | None:intergenic | 45.0% | |
| ! | CTCTGTCTCTGAAAAGCCAA+GGG | + | chr1_4:5485355-5485374 | Msa0145760:CDS | 45.0% |
| ! | TCTGTCTCTGAAAAGCCAAG+GGG | + | chr1_4:5485356-5485375 | Msa0145760:CDS | 45.0% |
| ! | TTGATGGCCAGTGGTATACA+TGG | + | chr1_4:5485448-5485467 | Msa0145760:CDS | 45.0% |
| CAGGTTAGAAGTTAGGCCTT+TGG | + | chr1_4:5485725-5485744 | Msa0145760:exon | 45.0% | |
| ! | AATGGATGTTGGCTACCCAA+AGG | - | chr1_4:5485744-5485763 | None:intergenic | 45.0% |
| ! | CCCAATGTTTTCCCAATTCG+AGG | + | chr1_4:5485876-5485895 | Msa0145760:three_prime_UTR | 45.0% |
| GCCTCGAATTGGGAAAACAT+TGG | - | chr1_4:5485880-5485899 | None:intergenic | 45.0% | |
| TTCCCAATTCGAGGCAATTG+AGG | + | chr1_4:5485885-5485904 | Msa0145760:three_prime_UTR | 45.0% | |
| !!! | TAAGAAAATATTTTTTTTTA+TGG | + | chr1_4:5484055-5484074 | Msa0145760:intron | 5.0% |
| !!! | AAGAAAATATTTTTTTTTAT+GGG | + | chr1_4:5484056-5484075 | Msa0145760:intron | 5.0% |
| !!! | TTTTTATAAATAAGTAAAAT+CGG | + | chr1_4:5484275-5484294 | Msa0145760:intron | 5.0% |
| !! | GTTGTTTTGTTACGGCCTGG+TGG | - | chr1_4:5478861-5478880 | None:intergenic | 50.0% |
| CCAGGCCGTAACAAAACAAC+CGG | + | chr1_4:5478861-5478880 | Msa0145760:five_prime_UTR | 50.0% | |
| CAGGCCGTAACAAAACAACC+GGG | + | chr1_4:5478862-5478881 | Msa0145760:five_prime_UTR | 50.0% | |
| !! | GAAGAGGGAGTGCTGTTTAG+TGG | - | chr1_4:5478911-5478930 | None:intergenic | 50.0% |
| ! | TTTTAGGCTTCGTAAGCGGC+GGG | - | chr1_4:5479108-5479127 | None:intergenic | 50.0% |
| !! | GTTTTAGGCTTCGTAAGCGG+CGG | - | chr1_4:5479109-5479128 | None:intergenic | 50.0% |
| !!! | GTTGGGGTTTTGGGAGCTTA+GGG | - | chr1_4:5479138-5479157 | None:intergenic | 50.0% |
| ! | AGGGTTAGGGTTGGGGTTTT+GGG | - | chr1_4:5479147-5479166 | None:intergenic | 50.0% |
| ! | TAGGGTTAGGGTTGGGGTTT+TGG | - | chr1_4:5479148-5479167 | None:intergenic | 50.0% |
| ! | TGTTTGAGGTGAGGAAACGG+TGG | - | chr1_4:5479223-5479242 | None:intergenic | 50.0% |
| GTTTCCTTGGGGAGATCTTC+GGG | - | chr1_4:5479284-5479303 | None:intergenic | 50.0% | |
| CGTTTCCTTGGGGAGATCTT+CGG | - | chr1_4:5479285-5479304 | None:intergenic | 50.0% | |
| CCCAAGTGGAAGCAACGATA+AGG | - | chr1_4:5479313-5479332 | None:intergenic | 50.0% | |
| GTTGCTTCCACTTGGGAAGA+CGG | + | chr1_4:5479317-5479336 | Msa0145760:CDS | 50.0% | |
| ! | TGGTTTTCCGTCTTCCCAAG+TGG | - | chr1_4:5479327-5479346 | None:intergenic | 50.0% |
| !! | ATTCTTCGCCGATTGGCTTG+CGG | + | chr1_4:5479361-5479380 | Msa0145760:CDS | 50.0% |
| ! | TGTGAAACGGATGAAGGCGT+TGG | + | chr1_4:5479499-5479518 | Msa0145760:CDS | 50.0% |
| !! | GTGAAACGGATGAAGGCGTT+GGG | + | chr1_4:5479500-5479519 | Msa0145760:CDS | 50.0% |
| TCAACATCTCCTTCCCCCAA+CGG | - | chr1_4:5479542-5479561 | None:intergenic | 50.0% | |
| TTGGGGGAAGGAGATGTTGA+TGG | + | chr1_4:5479542-5479561 | Msa0145760:CDS | 50.0% | |
| !! | AGGAGATGTTGATGGTGGTG+AGG | + | chr1_4:5479550-5479569 | Msa0145760:CDS | 50.0% |
| !! | AGATGTTGATGGTGGTGAGG+TGG | + | chr1_4:5479553-5479572 | Msa0145760:CDS | 50.0% |
| AAGTGGTGTGGGAAGGTTGT+TGG | + | chr1_4:5479590-5479609 | Msa0145760:CDS | 50.0% | |
| GAGAATGCTGAGGAGGAAAG+CGG | + | chr1_4:5479647-5479666 | Msa0145760:CDS | 50.0% | |
| AGAGTCTGATGAGGAGGAAG+AGG | + | chr1_4:5479691-5479710 | Msa0145760:CDS | 50.0% | |
| !! | CTTCCTCGAAGGTGCTTTAC+CGG | - | chr1_4:5479750-5479769 | None:intergenic | 50.0% |
| ! | TAAAGCACCTTCGAGGAAGC+TGG | + | chr1_4:5479751-5479770 | Msa0145760:CDS | 50.0% |
| GCTACGGTGAAGGAGAGTAA+TGG | + | chr1_4:5479776-5479795 | Msa0145760:CDS | 50.0% | |
| GCGAAAGCTACACTCTGGTT+TGG | + | chr1_4:5480086-5480105 | Msa0145760:intron | 50.0% | |
| GCAATCCTCACCTTACAAGC+CGG | + | chr1_4:5480268-5480287 | Msa0145760:intron | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr1_4:5480276-5480295 | None:intergenic | 50.0% |
| TGGACTAAGTCACAGCTTCG+AGG | + | chr1_4:5480439-5480458 | Msa0145760:CDS | 50.0% | |
| ! | CACACCCAACTTTTCGCTAC+TGG | - | chr1_4:5481120-5481139 | None:intergenic | 50.0% |
| CAGTAGCGAAAAGTTGGGTG+TGG | + | chr1_4:5481118-5481137 | Msa0145760:CDS | 50.0% | |
| GAAAAGTTGGGTGTGGGAGA+TGG | + | chr1_4:5481125-5481144 | Msa0145760:CDS | 50.0% | |
| GACGCTGACACATTGTTGTC+AGG | + | chr1_4:5481264-5481283 | Msa0145760:intron | 50.0% | |
| ! | CTACAGCTAGAGCTAGTCTC+CGG | - | chr1_4:5481380-5481399 | None:intergenic | 50.0% |
| !! | ACTAGCGGTATCGATAACGG+CGG | - | chr1_4:5481997-5482016 | None:intergenic | 50.0% |
| GCATGATCTGAAAATCGCCG+CGG | + | chr1_4:5482076-5482095 | Msa0145760:intron | 50.0% | |
| GAAAATCGCCGCGGATAGAA+TGG | + | chr1_4:5482085-5482104 | Msa0145760:intron | 50.0% | |
| CGTGTCTTCCATTCTATCCG+CGG | - | chr1_4:5482096-5482115 | None:intergenic | 50.0% | |
| AAAGCTCCGATTACCGTCTC+TGG | - | chr1_4:5482305-5482324 | Msa0145770:CDS | 50.0% | |
| ! | GACGGAGGGAGTATGTTGTT+GGG | + | chr1_4:5482913-5482932 | Msa0145760:intron | 50.0% |
| CAGATGTTAGCCCATCTGAG+AGG | + | chr1_4:5483317-5483336 | Msa0145760:intron | 50.0% | |
| ATGTTAGCCCATCTGAGAGG+AGG | + | chr1_4:5483320-5483339 | Msa0145760:intron | 50.0% | |
| CACATGTTTGCAATCAGGCC+AGG | + | chr1_4:5483408-5483427 | Msa0145760:intron | 50.0% | |
| TGTTTGCAATCAGGCCAGGT+AGG | + | chr1_4:5483412-5483431 | Msa0145760:intron | 50.0% | |
| !! | TCTGGTCTGGTCTTATCCAG+TGG | + | chr1_4:5483464-5483483 | Msa0145760:intron | 50.0% |
| CTTTGTGGATAGTGACAGGC+CGG | - | chr1_4:5483490-5483509 | None:intergenic | 50.0% | |
| TGCTGGAGTATGGCCGAATT+TGG | + | chr1_4:5483714-5483733 | Msa0145760:intron | 50.0% | |
| TGGAGTATGGCCGAATTTGG+TGG | + | chr1_4:5483717-5483736 | Msa0145760:intron | 50.0% | |
| GGAGTATGGCCGAATTTGGT+GGG | + | chr1_4:5483718-5483737 | Msa0145760:intron | 50.0% | |
| ! | GAGTATGGCCGAATTTGGTG+GGG | + | chr1_4:5483719-5483738 | Msa0145760:intron | 50.0% |
| ! | AGTATGGCCGAATTTGGTGG+GGG | + | chr1_4:5483720-5483739 | Msa0145760:intron | 50.0% |
| ACCTCGGAGCGATTAACTGA+AGG | + | chr1_4:5484415-5484434 | Msa0145760:CDS | 50.0% | |
| GTTGCTGAAGCCTATTACCC+AGG | + | chr1_4:5484579-5484598 | Msa0145760:CDS | 50.0% | |
| CAGTGTAGATGCCGGAACAA+AGG | + | chr1_4:5484690-5484709 | Msa0145760:CDS | 50.0% | |
| TCAGAGCAGTCAAGGAATCC+TGG | - | chr1_4:5485033-5485052 | None:intergenic | 50.0% | |
| GGATTCCTTGACTGCTCTGA+AGG | + | chr1_4:5485033-5485052 | Msa0145760:intron | 50.0% | |
| ATCCTTTCACAAGGGTCAGG+CGG | - | chr1_4:5485081-5485100 | None:intergenic | 50.0% | |
| TCCATCCTTTCACAAGGGTC+AGG | - | chr1_4:5485084-5485103 | None:intergenic | 50.0% | |
| TGCCGACGTGAAAGCTTTCT+CGG | + | chr1_4:5485329-5485348 | Msa0145760:CDS | 50.0% | |
| CTCCGAGAAAGCTTTCACGT+CGG | - | chr1_4:5485334-5485353 | None:intergenic | 50.0% | |
| ! | GCTCTGTCTCTGAAAAGCCA+AGG | + | chr1_4:5485354-5485373 | Msa0145760:CDS | 50.0% |
| AGGCAACTTCATACTCCCCT+TGG | - | chr1_4:5485374-5485393 | None:intergenic | 50.0% | |
| ACACGAGTGAACATGCTCAC+AGG | - | chr1_4:5485394-5485413 | None:intergenic | 50.0% | |
| TCACTCGTGTTGTGTCCTCT+TGG | + | chr1_4:5485404-5485423 | Msa0145760:CDS | 50.0% | |
| ACCTTCCTCAGCTCCATAGA+CGG | - | chr1_4:5485641-5485660 | None:intergenic | 50.0% | |
| ! | GAGGAAGGTGGATTTGATCC+AGG | + | chr1_4:5485652-5485671 | Msa0145760:CDS | 50.0% |
| AAGTCGAGCCGCAAAGAATC+AGG | + | chr1_4:5485706-5485725 | Msa0145760:CDS | 50.0% | |
| !! | CCGGTTGTTTTGTTACGGCC+TGG | - | chr1_4:5478864-5478883 | None:intergenic | 55.0% |
| TCGTGTGAGTGTGAGTGTGG+CGG | - | chr1_4:5478965-5478984 | None:intergenic | 55.0% | |
| !!! | GGTTGGGGTTTTGGGAGCTT+AGG | - | chr1_4:5479139-5479158 | None:intergenic | 55.0% |
| ! | GAGGCGGTTAGAGAGGGTTT+TGG | - | chr1_4:5479201-5479220 | None:intergenic | 55.0% |
| TTGAGGTGAGGAAACGGTGG+AGG | - | chr1_4:5479220-5479239 | None:intergenic | 55.0% | |
| CGAACTCTCCGCAAGCCAAT+CGG | - | chr1_4:5479372-5479391 | None:intergenic | 55.0% | |
| !! | CGATTGGCTTGCGGAGAGTT+CGG | + | chr1_4:5479370-5479389 | Msa0145760:CDS | 55.0% |
| !! | GTATTCGGTGTCGGTAGTGG+AGG | + | chr1_4:5479440-5479459 | Msa0145760:CDS | 55.0% |
| !! | GGTGTCGGTAGTGGAGGTTA+TGG | + | chr1_4:5479446-5479465 | Msa0145760:CDS | 55.0% |
| !! | AAACGGATGAAGGCGTTGGG+TGG | + | chr1_4:5479503-5479522 | Msa0145760:CDS | 55.0% |
| GAGATGATTCCGTTGGGGGA+AGG | + | chr1_4:5479530-5479549 | Msa0145760:CDS | 55.0% | |
| ! | GGGGAAGGAGATGTTGATGG+TGG | + | chr1_4:5479545-5479564 | Msa0145760:CDS | 55.0% |
| !! | TGATGGTGGTGAGGTGGATG+AGG | + | chr1_4:5479559-5479578 | Msa0145760:CDS | 55.0% |
| GTCTGATGAGGAGGAAGAGG+CGG | + | chr1_4:5479694-5479713 | Msa0145760:CDS | 55.0% | |
| ! | TTGCCGGTAAAGCACCTTCG+AGG | + | chr1_4:5479744-5479763 | Msa0145760:CDS | 55.0% |
| TTCGAGGAAGCTGGTGGCTA+CGG | + | chr1_4:5479760-5479779 | Msa0145760:CDS | 55.0% | |
| AAGTCACAGCTTCGAGGTCG+AGG | + | chr1_4:5480445-5480464 | Msa0145760:CDS | 55.0% | |
| !! | CGGTGTTGGTGCATCTAAGG+CGG | - | chr1_4:5481977-5481996 | None:intergenic | 55.0% |
| !! | GGTATCGATAACGGCGGTGT+TGG | - | chr1_4:5481991-5482010 | None:intergenic | 55.0% |
| !! | CACGGTCTCCGTTGATTCGT+TGG | - | chr1_4:5482036-5482055 | None:intergenic | 55.0% |
| CAACGAATCAACGGAGACCG+TGG | + | chr1_4:5482034-5482053 | Msa0145760:intron | 55.0% | |
| CAGCTTCTCTCTCACAGCCA+CGG | - | chr1_4:5482054-5482073 | None:intergenic | 55.0% | |
| TGGCGGCGTTATTGCATCTG+AGG | + | chr1_4:5482521-5482540 | Msa0145760:intron | 55.0% | |
| CGGCGTTATTGCATCTGAGG+TGG | + | chr1_4:5482524-5482543 | Msa0145760:intron | 55.0% | |
| ! | GGACGGAGGGAGTATGTTGT+TGG | + | chr1_4:5482912-5482931 | Msa0145760:intron | 55.0% |
| AATCAGGCCAGGTAGGCGAA+AGG | + | chr1_4:5483419-5483438 | Msa0145760:intron | 55.0% | |
| GATGGATCCTTTCGCCTACC+TGG | - | chr1_4:5483429-5483448 | None:intergenic | 55.0% | |
| !! | GTCTGGTCTTATCCAGTGGC+CGG | + | chr1_4:5483468-5483487 | Msa0145760:intron | 55.0% |
| CTTGCCACCCCCACCAAATT+CGG | - | chr1_4:5483730-5483749 | None:intergenic | 55.0% | |
| ! | GAATTTGGTGGGGGTGGCAA+GGG | + | chr1_4:5483729-5483748 | Msa0145760:intron | 55.0% |
| CAGAGCTGTTGTTCGCGTGT+CGG | + | chr1_4:5483813-5483832 | Msa0145760:intron | 55.0% | |
| GCCTTCAGTTAATCGCTCCG+AGG | - | chr1_4:5484419-5484438 | None:intergenic | 55.0% | |
| TACCGCCTGACCCTTGTGAA+AGG | + | chr1_4:5485076-5485095 | Msa0145760:CDS | 55.0% | |
| GCCTGACCCTTGTGAAAGGA+TGG | + | chr1_4:5485080-5485099 | Msa0145760:CDS | 55.0% | |
| CTTTCACGTCGGCATGCCAA+GGG | - | chr1_4:5485323-5485342 | None:intergenic | 55.0% | |
| CGACGTGAAAGCTTTCTCGG+AGG | + | chr1_4:5485332-5485351 | Msa0145760:CDS | 55.0% | |
| GTCTATGGAGCTGAGGAAGG+TGG | + | chr1_4:5485640-5485659 | Msa0145760:CDS | 55.0% | |
| !! | TACGGCCTGGTGGGCTTTAG+CGG | - | chr1_4:5478851-5478870 | None:intergenic | 60.0% |
| TGTGAGTGTGAGTGTGGCGG+TGG | - | chr1_4:5478962-5478981 | None:intergenic | 60.0% | |
| GCGTCGTGTGAGTGTGAGTG+TGG | - | chr1_4:5478968-5478987 | None:intergenic | 60.0% | |
| ! | TTGTGGCGGAGAAGAGAGCG+AGG | - | chr1_4:5479064-5479083 | None:intergenic | 60.0% |
| ACGGTGGAGGCGGTTAGAGA+GGG | - | chr1_4:5479207-5479226 | None:intergenic | 60.0% | |
| AACGGTGGAGGCGGTTAGAG+AGG | - | chr1_4:5479208-5479227 | None:intergenic | 60.0% | |
| AGGTGAGGAAACGGTGGAGG+CGG | - | chr1_4:5479217-5479236 | None:intergenic | 60.0% | |
| CGAACCCGAAGATCTCCCCA+AGG | + | chr1_4:5479277-5479296 | Msa0145760:CDS | 60.0% | |
| GGAAGACGGAAAACCACCGC+CGG | + | chr1_4:5479331-5479350 | Msa0145760:CDS | 60.0% | |
| !! | TTGGCTTGCGGAGAGTTCGG+AGG | + | chr1_4:5479373-5479392 | Msa0145760:CDS | 60.0% |
| !! | GCGGTATTCGGTGTCGGTAG+TGG | + | chr1_4:5479437-5479456 | Msa0145760:CDS | 60.0% |
| TGAGGAGGAAGAGGCGGAGT+CGG | + | chr1_4:5479700-5479719 | Msa0145760:CDS | 60.0% | |
| AGCACCTTCGAGGAAGCTGG+TGG | + | chr1_4:5479754-5479773 | Msa0145760:CDS | 60.0% | |
| GTAGCCACCAGCTTCCTCGA+AGG | - | chr1_4:5479761-5479780 | None:intergenic | 60.0% | |
| GAAGCTGGTGGCTACGGTGA+AGG | + | chr1_4:5479766-5479785 | Msa0145760:CDS | 60.0% | |
| TCACAGCTTCGAGGTCGAGG+TGG | + | chr1_4:5480448-5480467 | Msa0145760:CDS | 60.0% | |
| CATGGAGGCAACCCCTAGCT+TGG | + | chr1_4:5481050-5481069 | Msa0145760:CDS | 60.0% | |
| !! | CGGCGGTGTTGGTGCATCTA+AGG | - | chr1_4:5481980-5481999 | None:intergenic | 60.0% |
| CCATACTCCAGCACGCGAAG+GGG | - | chr1_4:5483707-5483726 | None:intergenic | 60.0% | |
| GCCATACTCCAGCACGCGAA+GGG | - | chr1_4:5483708-5483727 | None:intergenic | 60.0% | |
| ! | ATGGCCGAATTTGGTGGGGG+TGG | + | chr1_4:5483723-5483742 | Msa0145760:intron | 60.0% |
| ! | CGAATTTGGTGGGGGTGGCA+AGG | + | chr1_4:5483728-5483747 | Msa0145760:intron | 60.0% |
| GCAGTCGCCCCTTCTTCAGA+TGG | - | chr1_4:5484935-5484954 | None:intergenic | 60.0% | |
| TCAGGCGGTATACAGTGCGC+TGG | - | chr1_4:5485066-5485085 | None:intergenic | 60.0% | |
| GCTTTCACGTCGGCATGCCA+AGG | - | chr1_4:5485324-5485343 | None:intergenic | 60.0% | |
| ACATGGCTGCCACACCATCC+TGG | + | chr1_4:5485614-5485633 | Msa0145760:CDS | 60.0% | |
| CATGGCTGCCACACCATCCT+GGG | + | chr1_4:5485615-5485634 | Msa0145760:CDS | 60.0% | |
| ATAGACGGCCCAGGATGGTG+TGG | - | chr1_4:5485626-5485645 | None:intergenic | 60.0% | |
| ACACCATCCTGGGCCGTCTA+TGG | + | chr1_4:5485625-5485644 | Msa0145760:CDS | 60.0% | |
| GCCGTCTATGGAGCTGAGGA+AGG | + | chr1_4:5485637-5485656 | Msa0145760:CDS | 60.0% | |
| GCAGACCGCTAAAGCCCACC+AGG | + | chr1_4:5478843-5478862 | Msa0145760:five_prime_UTR | 65.0% | |
| CGGTGGAAAACGCCGTGGGA+GGG | - | chr1_4:5478945-5478964 | None:intergenic | 65.0% | |
| GTGGCGGTGGAAAACGCCGT+GGG | - | chr1_4:5478949-5478968 | None:intergenic | 65.0% | |
| TGTGGCGGTGGAAAACGCCG+TGG | - | chr1_4:5478950-5478969 | None:intergenic | 65.0% | |
| ! | GCGAGGAGTGTGAGACGAGC+TGG | - | chr1_4:5479047-5479066 | None:intergenic | 65.0% |
| GATAGTGACAGGCCGGCCAC+TGG | - | chr1_4:5483483-5483502 | None:intergenic | 65.0% | |
| TACTCCAGCACGCGAAGGGG+AGG | - | chr1_4:5483704-5483723 | None:intergenic | 65.0% | |
| CCCCTTCGCGTGCTGGAGTA+TGG | + | chr1_4:5483704-5483723 | Msa0145760:intron | 65.0% | |
| GGCCATACTCCAGCACGCGA+AGG | - | chr1_4:5483709-5483728 | None:intergenic | 65.0% | |
| TGAAGAAGGGGCGACTGCGC+TGG | + | chr1_4:5484937-5484956 | Msa0145760:intron | 65.0% | |
| GCTCCATAGACGGCCCAGGA+TGG | - | chr1_4:5485631-5485650 | None:intergenic | 65.0% | |
| CTCAGCTCCATAGACGGCCC+AGG | - | chr1_4:5485635-5485654 | None:intergenic | 65.0% | |
| CTGGGCCGTCTATGGAGCTG+AGG | + | chr1_4:5485633-5485652 | Msa0145760:CDS | 65.0% | |
| GCGGTGGAAAACGCCGTGGG+AGG | - | chr1_4:5478946-5478965 | None:intergenic | 70.0% | |
| CTTGCCTCCCCTTCGCGTGC+TGG | + | chr1_4:5483697-5483716 | Msa0145760:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5478843 | 5486129 | 5478843 | ID=Msa0145760;Name=Msa0145760 |
| chr1_4 | mRNA | 5478843 | 5486129 | 5478843 | ID=Msa0145760-mRNA-1;Parent=Msa0145760;Name=Msa0145760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=183|1|1|1|1|1|8|397|641 |
| chr1_4 | exon | 5478843 | 5479859 | 5478843 | ID=Msa0145760-mRNA-1:exon:2253;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5480394 | 5480509 | 5480394 | ID=Msa0145760-mRNA-1:exon:2254;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5481047 | 5481222 | 5481047 | ID=Msa0145760-mRNA-1:exon:2255;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5484410 | 5484600 | 5484410 | ID=Msa0145760-mRNA-1:exon:2256;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5484682 | 5484768 | 5484682 | ID=Msa0145760-mRNA-1:exon:2257;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5485034 | 5485191 | 5485034 | ID=Msa0145760-mRNA-1:exon:2258;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5485287 | 5485497 | 5485287 | ID=Msa0145760-mRNA-1:exon:2259;Parent=Msa0145760-mRNA-1 |
| chr1_4 | exon | 5485580 | 5486129 | 5485580 | ID=Msa0145760-mRNA-1:exon:2260;Parent=Msa0145760-mRNA-1 |
| chr1_4 | five_prime_UTR | 5478843 | 5479025 | 5478843 | ID=Msa0145760-mRNA-1:five_prime_utr;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5479026 | 5479859 | 5479026 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5480394 | 5480509 | 5480394 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5481047 | 5481222 | 5481047 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5484410 | 5484600 | 5484410 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5484682 | 5484768 | 5484682 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5485034 | 5485191 | 5485034 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5485287 | 5485497 | 5485287 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | CDS | 5485580 | 5485732 | 5485580 | ID=Msa0145760-mRNA-1:cds;Parent=Msa0145760-mRNA-1 |
| chr1_4 | three_prime_UTR | 5485733 | 5486129 | 5485733 | ID=Msa0145760-mRNA-1:three_prime_utr;Parent=Msa0145760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
