Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003610 | sp|Q8RXN5|TYW1_ARATH | 67.344 | 640 | 137 | 7 | 4 | 577 | 5 | 638 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003610 | Msa0058320 | 0.922985 | 4.812551e-89 | -8.615850e-47 |
| Msa0003610 | Msa0145760 | 0.931600 | 2.970782e-94 | -8.615850e-47 |
| Msa0003610 | Msa0425410 | 0.833623 | 4.794516e-56 | -8.615850e-47 |
| Msa0003610 | Msa0436720 | 0.822003 | 2.988309e-53 | -8.615850e-47 |
| Msa0003610 | Msa1108020 | 0.813715 | 2.224506e-51 | -8.615850e-47 |
| Msa0003610 | Msa1152120 | 0.832184 | 1.092775e-55 | -8.615850e-47 |
| Msa0003610 | Msa1284350 | 0.815180 | 1.054714e-51 | -8.615850e-47 |
| Msa0003610 | Msa1402610 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003610 | MtrunA17_Chr1g0155111 | 89.097 | 642 | 13 | 3 | 1 | 585 | 1 | 642 | 0.0 | 1163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003610 | AT1G75200.1 | 67.344 | 640 | 137 | 7 | 4 | 577 | 5 | 638 | 0.0 | 852 |
Find 181 sgRNAs with CRISPR-Local
Find 564 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGGTTAGGGTTGGGGTTT+TGG | 0.092746 | 1_1:+6190658 | None:intergenic |
| TCCTGTTATTAGAGCAAATT+TGG | 0.158620 | 1_1:-6189974 | Msa0003610:CDS |
| GACCACTCTTTGGAGATTTC+TGG | 0.166707 | 1_1:-6184645 | Msa0003610:CDS |
| TTGCTAGCATAGTAGTATTT+TGG | 0.231265 | 1_1:-6183329 | Msa0003610:three_prime_UTR |
| ATTTAAATTCAGGTGGCTTC+TGG | 0.249615 | 1_1:-6183810 | Msa0003610:intron |
| TTGCAGGGTTATAAGATTAT+TGG | 0.257743 | 1_1:-6189415 | Msa0003610:intron |
| TTTATCTCTGGATACATAAT+AGG | 0.262090 | 1_1:+6184901 | None:intergenic |
| ACCAAATTTGCTCTAATAAC+AGG | 0.278071 | 1_1:+6189973 | None:intergenic |
| GCAGAATTCACGATCTCTAT+TGG | 0.280496 | 1_1:+6188650 | None:intergenic |
| ACACCATCCTGGGCCGTCTA+TGG | 0.292318 | 1_1:-6183753 | Msa0003610:CDS |
| TTTCCTCAATTGCCTCGAAT+TGG | 0.309958 | 1_1:+6183490 | None:intergenic |
| TTTCTTTATTGTGTAACTAT+AGG | 0.318590 | 1_1:-6183604 | Msa0003610:three_prime_UTR |
| AACCTCAAAACCTGGGTAAT+AGG | 0.319156 | 1_1:+6184790 | None:intergenic |
| AAGTGTAGATTTGCGGTATT+CGG | 0.326741 | 1_1:-6190378 | Msa0003610:CDS |
| TTTACGGAATTGAGAGTCAT+AGG | 0.364405 | 1_1:-6189315 | Msa0003610:intron |
| CTTCCTCGAAGGTGCTTTAC+CGG | 0.369795 | 1_1:+6190056 | None:intergenic |
| CCCTTGATTTCAATGAAGTC+GGG | 0.372694 | 1_1:+6184227 | None:intergenic |
| CAGGTTAGAAGTTAGGCCTT+TGG | 0.372783 | 1_1:-6183653 | Msa0003610:exon |
| ACCACTCTTTGGAGATTTCT+GGG | 0.373617 | 1_1:-6184644 | Msa0003610:CDS |
| CTTAAGAGAGTCCTTTGTTC+CGG | 0.374790 | 1_1:+6184678 | None:intergenic |
| ACTAAGAAGTTCAAAATTGA+TGG | 0.376599 | 1_1:-6183946 | Msa0003610:CDS |
| TGTTGATGATGGTGGTGATT+TGG | 0.380928 | 1_1:-6190178 | Msa0003610:CDS |
| TTCCTCAATTGCCTCGAATT+GGG | 0.383627 | 1_1:+6183491 | None:intergenic |
| TAAAGAAATGAAAGGGGAAA+TGG | 0.383908 | 1_1:+6183619 | None:intergenic |
| AGGTTAGAAGTTAGGCCTTT+GGG | 0.386484 | 1_1:-6183652 | Msa0003610:exon |
| AAGTCGAGCCGCAAAGAATC+AGG | 0.393504 | 1_1:-6183672 | Msa0003610:CDS |
| GCGAGGAGTGTGAGACGAGC+TGG | 0.394107 | 1_1:+6190759 | None:intergenic |
| ATCCAGGACAGTTGAGATAT+AGG | 0.397266 | 1_1:-6183710 | Msa0003610:CDS |
| GAGGCGGTTAGAGAGGGTTT+TGG | 0.398722 | 1_1:+6190605 | None:intergenic |
| GTATTACAACATATTTCAAT+AGG | 0.405724 | 1_1:-6183582 | Msa0003610:three_prime_UTR |
| TATTATAAACTCTTCAGTAT+TGG | 0.406516 | 1_1:-6184254 | Msa0003610:CDS |
| GTTGATCTTGAAGATATTGC+CGG | 0.412171 | 1_1:-6190075 | Msa0003610:CDS |
| ACTTCTAACCTGATTCTTTG+CGG | 0.414058 | 1_1:+6183664 | None:intergenic |
| TACACAATAAAGAAATGAAA+GGG | 0.418933 | 1_1:+6183612 | None:intergenic |
| TTGTGGATGAGTTGCACAAA+AGG | 0.421585 | 1_1:-6184873 | Msa0003610:CDS |
| TAGAGCAAATTTGGTGAAGC+AGG | 0.424165 | 1_1:-6189965 | Msa0003610:intron |
| GCGGTATTCGGTGTCGGTAG+TGG | 0.425958 | 1_1:-6190366 | Msa0003610:CDS |
| TGCATTTGTAACTAGAAAAG+TGG | 0.426329 | 1_1:+6184843 | None:intergenic |
| CTATGATAAATTTCATGATC+TGG | 0.430965 | 1_1:-6183902 | Msa0003610:intron |
| GCAATCGATAGACCACTCTT+TGG | 0.431413 | 1_1:-6184655 | Msa0003610:CDS |
| GTTGCTGAAGCCTATTACCC+AGG | 0.436691 | 1_1:-6184800 | Msa0003610:intron |
| GTTTAATCATATTTGTATGC+TGG | 0.437012 | 1_1:+6188621 | None:intergenic |
| CATTGTGCATTATCTCTTGT+TGG | 0.437204 | 1_1:-6184928 | Msa0003610:CDS |
| ACATGGCTGCCACACCATCC+TGG | 0.438997 | 1_1:-6183764 | Msa0003610:CDS |
| CGATTGGCTTGCGGAGAGTT+CGG | 0.440051 | 1_1:-6190433 | Msa0003610:CDS |
| CCTCGAATTGGGAAAACATT+GGG | 0.442699 | 1_1:+6183502 | None:intergenic |
| GGATTTGTAGAAGAAGTAGA+AGG | 0.443145 | 1_1:+6190719 | None:intergenic |
| TCCACAAGTGTATTTATCTC+TGG | 0.443802 | 1_1:+6184889 | None:intergenic |
| CGGAACAAAGGACTCTCTTA+AGG | 0.444253 | 1_1:-6184677 | Msa0003610:CDS |
| AGTATAAATTCTTCGCCGAT+TGG | 0.444572 | 1_1:-6190449 | Msa0003610:CDS |
| AAACAAATGAAAGGAGTTCC+TGG | 0.444665 | 1_1:-6188602 | Msa0003610:intron |
| CAAATCCAGTAGCGAAAAGT+TGG | 0.447385 | 1_1:-6188691 | Msa0003610:CDS |
| TTCCTATATCTCAACTGTCC+TGG | 0.455066 | 1_1:+6183708 | None:intergenic |
| TTATTTGCACATGCCAAGCT+AGG | 0.467055 | 1_1:+6188740 | None:intergenic |
| TAATACAATGCTTTAGACAT+AGG | 0.470953 | 1_1:-6183550 | Msa0003610:three_prime_UTR |
| GAGAGTAATGGGAAGTTGAA+TGG | 0.471230 | 1_1:-6190015 | Msa0003610:CDS |
| TTGAAGAGAGGTAGATAAAG+TGG | 0.472489 | 1_1:-6183305 | Msa0003610:three_prime_UTR |
| TCCATCCTTTCACAAGGGTC+AGG | 0.473152 | 1_1:+6184297 | None:intergenic |
| TGCCGACGTGAAAGCTTTCT+CGG | 0.477548 | 1_1:-6184049 | Msa0003610:CDS |
| CTACGGTGAAGGAGAGTAAT+GGG | 0.482227 | 1_1:-6190026 | Msa0003610:CDS |
| ACCCGACTTCATTGAAATCA+AGG | 0.485531 | 1_1:-6184228 | Msa0003610:CDS |
| CATGGAGGCAACCCCTAGCT+TGG | 0.491145 | 1_1:-6188753 | Msa0003610:CDS |
| GTAGAAGAAGTAGAAGGTTG+TGG | 0.494820 | 1_1:+6190725 | None:intergenic |
| GGTGAGAATTTCAATGCGGT+TGG | 0.495729 | 1_1:-6190336 | Msa0003610:CDS |
| ATCAAGGGTGTTACATATTG+TGG | 0.497705 | 1_1:-6184212 | Msa0003610:CDS |
| ACCCTTGATTTCAATGAAGT+CGG | 0.497934 | 1_1:+6184226 | None:intergenic |
| CATGGCTGCCACACCATCCT+GGG | 0.498661 | 1_1:-6183763 | Msa0003610:CDS |
| AAAGAATCAGGTTAGAAGTT+AGG | 0.499260 | 1_1:-6183660 | Msa0003610:exon |
| TTCGAGGAAGCTGGTGGCTA+CGG | 0.500414 | 1_1:-6190043 | Msa0003610:CDS |
| AGAGTCTGATGAGGAGGAAG+AGG | 0.501593 | 1_1:-6190112 | Msa0003610:CDS |
| CAGCATTCCATCCTTTCACA+AGG | 0.501696 | 1_1:+6184291 | None:intergenic |
| GTTGAATGGAAAGAAAGAAA+TGG | 0.505644 | 1_1:-6190001 | Msa0003610:CDS |
| GAAAAGTTGGGTGTGGGAGA+TGG | 0.507932 | 1_1:-6188678 | Msa0003610:CDS |
| GAATTTCAATGCGGTTGGTA+AGG | 0.508915 | 1_1:-6190331 | Msa0003610:CDS |
| GCCTCGAATTGGGAAAACAT+TGG | 0.510673 | 1_1:+6183501 | None:intergenic |
| TTCCCAATTCGAGGCAATTG+AGG | 0.514152 | 1_1:-6183493 | Msa0003610:three_prime_UTR |
| TATTTGCACATGCCAAGCTA+GGG | 0.514611 | 1_1:+6188741 | None:intergenic |
| TCACTCGTGTTGTGTCCTCT+TGG | 0.516638 | 1_1:-6183974 | Msa0003610:CDS |
| GGATTCCTTGACTGCTCTGA+AGG | 0.516788 | 1_1:-6184345 | Msa0003610:CDS |
| TGAGGAGGAAGAGGCGGAGT+CGG | 0.518460 | 1_1:-6190103 | Msa0003610:CDS |
| GGTAACGAGATGATTCCGTT+GGG | 0.519802 | 1_1:-6190279 | Msa0003610:CDS |
| GAGGAAGGTGGATTTGATCC+AGG | 0.523501 | 1_1:-6183726 | Msa0003610:CDS |
| AGGTGAGGAAACGGTGGAGG+CGG | 0.524499 | 1_1:+6190589 | None:intergenic |
| CAGTAGCGAAAAGTTGGGTG+TGG | 0.532702 | 1_1:-6188685 | Msa0003610:CDS |
| CGAGCTGGGACTGATGAGAA+TGG | 0.534353 | 1_1:+6190774 | None:intergenic |
| TAAAGCACCTTCGAGGAAGC+TGG | 0.534689 | 1_1:-6190052 | Msa0003610:CDS |
| GGTGTCGGTAGTGGAGGTTA+TGG | 0.534919 | 1_1:-6190357 | Msa0003610:CDS |
| CTCAGCTCCATAGACGGCCC+AGG | 0.535554 | 1_1:+6183746 | None:intergenic |
| TTTGTCGAAGTGTAGATTTG+CGG | 0.536931 | 1_1:-6190385 | Msa0003610:CDS |
| AAGTCACAGCTTCGAGGTCG+AGG | 0.539284 | 1_1:-6189358 | Msa0003610:CDS |
| CGAGGAGTGTGAGACGAGCT+GGG | 0.539403 | 1_1:+6190760 | None:intergenic |
| ATGAAAGGGGAAATGGATGT+TGG | 0.539507 | 1_1:+6183626 | None:intergenic |
| TTGATGGCCAGTGGTATACA+TGG | 0.541192 | 1_1:-6183930 | Msa0003610:CDS |
| TTGAGGTGAGGAAACGGTGG+AGG | 0.544628 | 1_1:+6190586 | None:intergenic |
| ATTCTTCGCCGATTGGCTTG+CGG | 0.545441 | 1_1:-6190442 | Msa0003610:CDS |
| CTCTGTCTCTGAAAAGCCAA+GGG | 0.546175 | 1_1:-6184023 | Msa0003610:CDS |
| TGTTGGTTTGAGAAATGAAG+AGG | 0.549143 | 1_1:+6190631 | None:intergenic |
| GCTTTCACGTCGGCATGCCA+AGG | 0.550330 | 1_1:+6184057 | None:intergenic |
| GAAGCTGGTGGCTACGGTGA+AGG | 0.550823 | 1_1:-6190037 | Msa0003610:CDS |
| GTGAAACGGATGAAGGCGTT+GGG | 0.552770 | 1_1:-6190303 | Msa0003610:CDS |
| GCCTGACCCTTGTGAAAGGA+TGG | 0.553096 | 1_1:-6184298 | Msa0003610:CDS |
| TGAAGAAGAGTCTGATGAGG+AGG | 0.553756 | 1_1:-6190118 | Msa0003610:CDS |
| CGAACTCTCCGCAAGCCAAT+CGG | 0.555358 | 1_1:+6190434 | None:intergenic |
| TTACACAATAAAGAAATGAA+AGG | 0.555394 | 1_1:+6183611 | None:intergenic |
| ACGCAATGCTATTTATTGCA+AGG | 0.558732 | 1_1:+6183374 | None:intergenic |
| TGGACTAAGTCACAGCTTCG+AGG | 0.559406 | 1_1:-6189364 | Msa0003610:CDS |
| AGGCAACTTCATACTCCCCT+TGG | 0.560657 | 1_1:+6184007 | None:intergenic |
| AACGGTGGAGGCGGTTAGAG+AGG | 0.565434 | 1_1:+6190598 | None:intergenic |
| GTCTGATGAGGAGGAAGAGG+CGG | 0.567189 | 1_1:-6190109 | Msa0003610:CDS |
| TGCTACATCAAAATTAACAA+TGG | 0.568819 | 1_1:-6184088 | Msa0003610:CDS |
| GGAGATTGTGAAACGGATGA+AGG | 0.571123 | 1_1:-6190310 | Msa0003610:CDS |
| TAACAATGGAAAATGTCCCT+TGG | 0.571608 | 1_1:-6184074 | Msa0003610:CDS |
| AGTCTATCCATGTATACCAC+TGG | 0.572314 | 1_1:+6183923 | None:intergenic |
| GCTCTGTCTCTGAAAAGCCA+AGG | 0.575623 | 1_1:-6184024 | Msa0003610:CDS |
| TCCAGAGATAAATACACTTG+TGG | 0.576447 | 1_1:-6184890 | Msa0003610:CDS |
| TCAGGCGGTATACAGTGCGC+TGG | 0.577014 | 1_1:+6184315 | None:intergenic |
| ACGGTGGAGGCGGTTAGAGA+GGG | 0.577423 | 1_1:+6190599 | None:intergenic |
| GCTACGGTGAAGGAGAGTAA+TGG | 0.579239 | 1_1:-6190027 | Msa0003610:CDS |
| TGGTAACGAGATGATTCCGT+TGG | 0.580232 | 1_1:-6190280 | Msa0003610:CDS |
| GCCGTCTATGGAGCTGAGGA+AGG | 0.583318 | 1_1:-6183741 | Msa0003610:CDS |
| TGGATGAGTTGCACAAAAGG+AGG | 0.584833 | 1_1:-6184870 | Msa0003610:CDS |
| AAATCCAGTAGCGAAAAGTT+GGG | 0.586529 | 1_1:-6188690 | Msa0003610:CDS |
| TTGCCGGTAAAGCACCTTCG+AGG | 0.590223 | 1_1:-6190059 | Msa0003610:CDS |
| AAGAATTTATACTCCGGCGG+TGG | 0.594684 | 1_1:+6190459 | None:intergenic |
| CAGTGTAGATGCCGGAACAA+AGG | 0.595194 | 1_1:-6184689 | Msa0003610:CDS |
| AATATGATTAAACAAATGAA+AGG | 0.595549 | 1_1:-6188611 | Msa0003610:CDS |
| GTGGTGTCAAGATTTGTAGA+TGG | 0.595777 | 1_1:-6189384 | Msa0003610:CDS |
| GAAGAAGTAGAAGGTTGTGG+CGG | 0.596045 | 1_1:+6190728 | None:intergenic |
| AGATTTGCGGTATTCGGTGT+CGG | 0.597906 | 1_1:-6190372 | Msa0003610:CDS |
| TGATGAAGAAGAGTCTGATG+AGG | 0.598927 | 1_1:-6190121 | Msa0003610:CDS |
| TGTGAAACGGATGAAGGCGT+TGG | 0.600791 | 1_1:-6190304 | Msa0003610:CDS |
| ACACGAGTGAACATGCTCAC+AGG | 0.600820 | 1_1:+6183987 | None:intergenic |
| ATCCTTTCACAAGGGTCAGG+CGG | 0.604119 | 1_1:+6184300 | None:intergenic |
| ACATTGGGACTTAAATACAC+TGG | 0.604849 | 1_1:+6183517 | None:intergenic |
| GTCTATGGAGCTGAGGAAGG+TGG | 0.604936 | 1_1:-6183738 | Msa0003610:CDS |
| CTTTCACGTCGGCATGCCAA+GGG | 0.607070 | 1_1:+6184058 | None:intergenic |
| TTATATGTCAGTGTAGATGC+CGG | 0.607545 | 1_1:-6184697 | Msa0003610:CDS |
| CCCGACTTCATTGAAATCAA+GGG | 0.615860 | 1_1:-6184227 | Msa0003610:CDS |
| ACCTCGGAGCGATTAACTGA+AGG | 0.618092 | 1_1:-6184964 | Msa0003610:CDS |
| GCTCCATAGACGGCCCAGGA+TGG | 0.619796 | 1_1:+6183750 | None:intergenic |
| TCCCAGAAATCTCCAAAGAG+TGG | 0.620464 | 1_1:+6184643 | None:intergenic |
| GGGGAAGGAGATGTTGATGG+TGG | 0.624176 | 1_1:-6190258 | Msa0003610:intron |
| ATACTGAAAGGTGTTGATGA+TGG | 0.624454 | 1_1:-6190189 | Msa0003610:intron |
| AGTAGCGAAAAGTTGGGTGT+GGG | 0.624662 | 1_1:-6188684 | Msa0003610:CDS |
| CTGGGCCGTCTATGGAGCTG+AGG | 0.625153 | 1_1:-6183745 | Msa0003610:CDS |
| TAACGAGATGATTCCGTTGG+GGG | 0.625747 | 1_1:-6190277 | Msa0003610:CDS |
| TTGTGGCGGAGAAGAGAGCG+AGG | 0.627299 | 1_1:+6190742 | None:intergenic |
| GTAGCCACCAGCTTCCTCGA+AGG | 0.629332 | 1_1:+6190045 | None:intergenic |
| AAGATTATTGGTTCACACAG+TGG | 0.629945 | 1_1:-6189403 | Msa0003610:CDS |
| ACCTTCCTCAGCTCCATAGA+CGG | 0.630071 | 1_1:+6183740 | None:intergenic |
| TTGGTAAGGAGATTGTGAAA+CGG | 0.632862 | 1_1:-6190317 | Msa0003610:CDS |
| AATGGATGTTGGCTACCCAA+AGG | 0.633448 | 1_1:+6183637 | None:intergenic |
| ATAGACGGCCCAGGATGGTG+TGG | 0.635119 | 1_1:+6183755 | None:intergenic |
| TTGGCTTGCGGAGAGTTCGG+AGG | 0.639532 | 1_1:-6190430 | Msa0003610:CDS |
| TACCGCCTGACCCTTGTGAA+AGG | 0.639713 | 1_1:-6184302 | Msa0003610:CDS |
| ATTTGCACATGCCAAGCTAG+GGG | 0.639964 | 1_1:+6188742 | None:intergenic |
| AGTTCAAAATTGATGGCCAG+TGG | 0.640034 | 1_1:-6183939 | Msa0003610:CDS |
| CTGAAAGGTGTTGATGATGG+TGG | 0.640774 | 1_1:-6190186 | Msa0003610:intron |
| TGATTTGGAGAATGCTGAGG+AGG | 0.642559 | 1_1:-6190163 | Msa0003610:CDS |
| TTATGAGTGAAATAGGTGCA+TGG | 0.642687 | 1_1:-6188771 | Msa0003610:intron |
| GTATTCGGTGTCGGTAGTGG+AGG | 0.643075 | 1_1:-6190363 | Msa0003610:CDS |
| AGAGATAATGCACAATGCCG+TGG | 0.654133 | 1_1:+6184934 | None:intergenic |
| GTAACGAGATGATTCCGTTG+GGG | 0.654757 | 1_1:-6190278 | Msa0003610:CDS |
| AGCATTCCATCCTTTCACAA+GGG | 0.657631 | 1_1:+6184292 | None:intergenic |
| GGAAGACGGAAAACCACCGC+CGG | 0.657646 | 1_1:-6190472 | Msa0003610:intron |
| GAGAATGCTGAGGAGGAAAG+CGG | 0.660819 | 1_1:-6190156 | Msa0003610:CDS |
| ACACAATAAAGAAATGAAAG+GGG | 0.662501 | 1_1:+6183613 | None:intergenic |
| TCACAGCTTCGAGGTCGAGG+TGG | 0.662705 | 1_1:-6189355 | Msa0003610:CDS |
| AGCACCTTCGAGGAAGCTGG+TGG | 0.676170 | 1_1:-6190049 | Msa0003610:CDS |
| CTCCGAGAAAGCTTTCACGT+CGG | 0.679985 | 1_1:+6184047 | None:intergenic |
| TCGGCGAAGAATTTATACTC+CGG | 0.685809 | 1_1:+6190453 | None:intergenic |
| GCGAAGAATTTATACTCCGG+CGG | 0.686331 | 1_1:+6190456 | None:intergenic |
| TAACTGAAGGCATGACACCA+CGG | 0.686690 | 1_1:-6184951 | Msa0003610:CDS |
| AAACGGATGAAGGCGTTGGG+TGG | 0.695210 | 1_1:-6190300 | Msa0003610:CDS |
| TGGGACTGATGAGAATGGCA+TGG | 0.701260 | 1_1:+6190779 | None:intergenic |
| TGGTGATTTGGAGAATGCTG+AGG | 0.702453 | 1_1:-6190166 | Msa0003610:CDS |
| GCCTTCAGTTAATCGCTCCG+AGG | 0.710873 | 1_1:+6184963 | None:intergenic |
| CGACGTGAAAGCTTTCTCGG+AGG | 0.740056 | 1_1:-6184046 | Msa0003610:CDS |
| TCTGTCTCTGAAAAGCCAAG+GGG | 0.741241 | 1_1:-6184022 | Msa0003610:CDS |
| TGAGTGAAATAGGTGCATGG+AGG | 0.759000 | 1_1:-6188768 | Msa0003610:intron |
| TTATGGTGAGAATTTCAATG+CGG | 0.771681 | 1_1:-6190340 | Msa0003610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAATTTTTAATTAAAA+AGG | - | chr1_1:6186695-6186714 | Msa0003610:intron | 0.0% |
| !!! | TTTTTTTTTGCTTATAATTT+GGG | + | chr1_1:6187251-6187270 | Msa0003620:CDS | 10.0% |
| !!! | TTTTTTTTTTGCTTATAATT+TGG | + | chr1_1:6187252-6187271 | Msa0003620:CDS | 10.0% |
| !!! | ATTTTTAATATATTTGTTGT+TGG | - | chr1_1:6187668-6187687 | Msa0003610:intron | 10.0% |
| !! | TTCTTAATAATATACTTAAA+TGG | + | chr1_1:6188194-6188213 | None:intergenic | 10.0% |
| !!! | AGAAAATATTTTTTTTTATG+GGG | - | chr1_1:6188706-6188725 | Msa0003610:CDS | 10.0% |
| !! | AATATGATTAAACAAATGAA+AGG | - | chr1_1:6185417-6185436 | Msa0003610:intron | 15.0% |
| !! | AAAGAAAATATAAAATTACC+AGG | + | chr1_1:6185447-6185466 | None:intergenic | 15.0% |
| !! | TGATGAATATAATCAAATAA+AGG | + | chr1_1:6185741-6185760 | None:intergenic | 15.0% |
| !! | AAAACTAAAACATAAGAATT+TGG | - | chr1_1:6187288-6187307 | Msa0003610:intron | 15.0% |
| !! | GTTTATTCTCATAAAATTAA+AGG | + | chr1_1:6187425-6187444 | Msa0003620:intron | 15.0% |
| !!! | AGTTTTTTTTGCTTATATTA+TGG | - | chr1_1:6187539-6187558 | Msa0003610:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATATTAT+GGG | - | chr1_1:6187540-6187559 | Msa0003610:intron | 15.0% |
| !! | TTTAGGTAAACAATAATTAT+TGG | - | chr1_1:6187831-6187850 | Msa0003610:intron | 15.0% |
| !!! | TGAATAATAAGAAAATGTTT+TGG | - | chr1_1:6188662-6188681 | Msa0003610:CDS | 15.0% |
| !!! | CATATAATTAGTTTCAAAAT+TGG | - | chr1_1:6189015-6189034 | Msa0003610:intron | 15.0% |
| !! | TTTATCATCAATTTAAATTC+AGG | - | chr1_1:6190208-6190227 | Msa0003610:intron | 15.0% |
| !!! | TTAAAATATTATCGATTTGC+AGG | - | chr1_1:6184597-6184616 | Msa0003610:intron | 20.0% |
| !!! | TAAAATATTATCGATTTGCA+GGG | - | chr1_1:6184598-6184617 | Msa0003610:intron | 20.0% |
| !! | AATAAGTTTGTAAAGTAATC+AGG | - | chr1_1:6184993-6185012 | Msa0003610:intron | 20.0% |
| !!! | GGTTTTAGTAAGTATTTTTT+TGG | - | chr1_1:6185153-6185172 | Msa0003610:intron | 20.0% |
| !! | TTTAAGGGAAAAATAAATGA+GGG | - | chr1_1:6185648-6185667 | Msa0003610:intron | 20.0% |
| !! | ATAAATGATGATCTCATAAT+AGG | + | chr1_1:6185718-6185737 | None:intergenic | 20.0% |
| !!! | ACAAGATATTTTTTTTCAAC+TGG | + | chr1_1:6185785-6185804 | None:intergenic | 20.0% |
| !!! | TTTTTGATGCAAATCAAAAT+AGG | + | chr1_1:6186553-6186572 | None:intergenic | 20.0% |
| !!! | TTCTTTGGAAAAAGTTTTAT+AGG | - | chr1_1:6187327-6187346 | Msa0003610:intron | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | - | chr1_1:6187352-6187371 | Msa0003610:intron | 20.0% |
| !!! | GAATAAACAAAAGTTTTTCT+TGG | - | chr1_1:6187437-6187456 | Msa0003610:intron | 20.0% |
| !!! | TGTCTTTTTTGCTTATATTT+TGG | - | chr1_1:6187503-6187522 | Msa0003610:intron | 20.0% |
| !!! | GTCTTTTTTGCTTATATTTT+GGG | - | chr1_1:6187504-6187523 | Msa0003610:intron | 20.0% |
| !! | AAAATGCTCAAAATTATTTG+AGG | + | chr1_1:6187653-6187672 | Msa0003620:CDS | 20.0% |
| !!! | TGTTCTTCAATTAATGTTTT+AGG | - | chr1_1:6187814-6187833 | Msa0003610:intron | 20.0% |
| !!! | TAAACCATTGACATTTTATT+TGG | + | chr1_1:6187879-6187898 | None:intergenic | 20.0% |
| !! | AAATAAAATGTCAATGGTTT+AGG | - | chr1_1:6187878-6187897 | Msa0003610:intron | 20.0% |
| !! | ATTGAAAACAAAAAGAAACA+AGG | + | chr1_1:6188591-6188610 | None:intergenic | 20.0% |
| !! | GGAAAACGATATTATAAAAT+GGG | + | chr1_1:6188878-6188897 | None:intergenic | 20.0% |
| !! | TGGAAAACGATATTATAAAA+TGG | + | chr1_1:6188879-6188898 | None:intergenic | 20.0% |
| !!! | TATAATATCGTTTTCCATAT+TGG | - | chr1_1:6188882-6188901 | Msa0003610:intron | 20.0% |
| !! | TATCAGTCAAAATGATATAA+CGG | + | chr1_1:6188959-6188978 | None:intergenic | 20.0% |
| !!! | ATTTTATAATTTGAACATGC+TGG | - | chr1_1:6189267-6189286 | Msa0003610:intron | 20.0% |
| !! | TATTATAAACTCTTCAGTAT+TGG | - | chr1_1:6189774-6189793 | Msa0003610:intron | 20.0% |
| !! | TACACAATAAAGAAATGAAA+GGG | + | chr1_1:6190419-6190438 | None:intergenic | 20.0% |
| !! | TTACACAATAAAGAAATGAA+AGG | + | chr1_1:6190420-6190439 | None:intergenic | 20.0% |
| !! | TTTCTTTATTGTGTAACTAT+AGG | - | chr1_1:6190424-6190443 | Msa0003610:CDS | 20.0% |
| !! | GTATTACAACATATTTCAAT+AGG | - | chr1_1:6190446-6190465 | Msa0003610:CDS | 20.0% |
| !! | ATATGCAGTTTTTGTCATAT+TGG | - | chr1_1:6184410-6184429 | Msa0003610:intron | 25.0% |
| !! | TATGCAGTTTTTGTCATATT+GGG | - | chr1_1:6184411-6184430 | Msa0003610:intron | 25.0% |
| ! | CTTGATAAGAGTTTATATAG+AGG | - | chr1_1:6184468-6184487 | Msa0003610:intron | 25.0% |
| ! | AATTGACATGTTGAAATTTG+GGG | + | chr1_1:6184539-6184558 | None:intergenic | 25.0% |
| ! | CAATTGACATGTTGAAATTT+GGG | + | chr1_1:6184540-6184559 | None:intergenic | 25.0% |
| ! | TCAATTGACATGTTGAAATT+TGG | + | chr1_1:6184541-6184560 | None:intergenic | 25.0% |
| !! | TGAACTTAAGTAATTTGTAG+AGG | + | chr1_1:6184756-6184775 | None:intergenic | 25.0% |
| ! | TAAATAAGGTAATGAATTGC+AGG | + | chr1_1:6184862-6184881 | None:intergenic | 25.0% |
| !!! | GTTTTTAAGTAACTTTGTGT+TGG | - | chr1_1:6185043-6185062 | Msa0003610:intron | 25.0% |
| ! | AAATGAATATATGATTGCTG+AGG | + | chr1_1:6185228-6185247 | None:intergenic | 25.0% |
| !! | TCAACTTTTATGAGTGAAAT+AGG | - | chr1_1:6185250-6185269 | Msa0003610:intron | 25.0% |
| ! | GTTTAATCATATTTGTATGC+TGG | + | chr1_1:6185410-6185429 | None:intergenic | 25.0% |
| ! | GTTTAAGGGAAAAATAAATG+AGG | - | chr1_1:6185647-6185666 | Msa0003610:intron | 25.0% |
| !!! | TTTTTCAACTGGAGTATTTA+GGG | + | chr1_1:6185774-6185793 | None:intergenic | 25.0% |
| !!! | TTTTTTCAACTGGAGTATTT+AGG | + | chr1_1:6185775-6185794 | None:intergenic | 25.0% |
| !! | AGAACAGTAGCAATTTTTAA+TGG | - | chr1_1:6186003-6186022 | Msa0003610:intron | 25.0% |
| ! | TGAAAAACATAGATGTTGTT+GGG | + | chr1_1:6186152-6186171 | None:intergenic | 25.0% |
| ! | ATGAAAAACATAGATGTTGT+TGG | + | chr1_1:6186153-6186172 | None:intergenic | 25.0% |
| !! | TTTTCATTTCAAACTTGAAG+TGG | - | chr1_1:6186166-6186185 | Msa0003610:intron | 25.0% |
| ! | TTTCATTTCAAACTTGAAGT+GGG | - | chr1_1:6186167-6186186 | Msa0003610:intron | 25.0% |
| ! | AAAGATTTCATCAAAAACCA+AGG | + | chr1_1:6186516-6186535 | None:intergenic | 25.0% |
| ! | AAAAGCTGATCAGATAATTT+CGG | - | chr1_1:6186832-6186851 | Msa0003610:intron | 25.0% |
| ! | ATTAATATTAGTTCACAACC+TGG | - | chr1_1:6186873-6186892 | Msa0003610:intron | 25.0% |
| !!! | ATATAAAGACTCTAAAGTTG+TGG | + | chr1_1:6187010-6187029 | Msa0003620:CDS | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | + | chr1_1:6187247-6187266 | Msa0003620:CDS | 25.0% |
| !!! | GTATAGTTTTGTGTTTTCTT+TGG | - | chr1_1:6187312-6187331 | Msa0003610:intron | 25.0% |
| !!! | AAACAATTTTCATTGGCTAT+TGG | - | chr1_1:6187359-6187378 | Msa0003610:intron | 25.0% |
| !! | TTTTTGCTTATATTATGGGA+CGG | - | chr1_1:6187544-6187563 | Msa0003610:intron | 25.0% |
| ! | TTTCAATAAGGGAATAACAA+TGG | + | chr1_1:6187714-6187733 | Msa0003620:CDS | 25.0% |
| ! | TACAACAATTGAGATTTCTT+TGG | + | chr1_1:6187915-6187934 | None:intergenic | 25.0% |
| ! | GAATCTATTTAAGTACTTTG+TGG | + | chr1_1:6188155-6188174 | None:intergenic | 25.0% |
| !!! | ACAGCATCGTTTTAATTAAA+CGG | + | chr1_1:6188498-6188517 | None:intergenic | 25.0% |
| ! | AAAAAGAAACAAGGAAATGT+TGG | + | chr1_1:6188582-6188601 | None:intergenic | 25.0% |
| !!! | TATATCATTTTGACTGATAC+TGG | - | chr1_1:6188960-6188979 | Msa0003610:intron | 25.0% |
| !!! | ATATCATTTTGACTGATACT+GGG | - | chr1_1:6188961-6188980 | Msa0003610:intron | 25.0% |
| ! | GAAACTAATTATATGCAGAA+CGG | + | chr1_1:6189010-6189029 | None:intergenic | 25.0% |
| ! | TTTATCTCTGGATACATAAT+AGG | + | chr1_1:6189130-6189149 | None:intergenic | 25.0% |
| !! | TTCAGCAACTTAATTTTATC+TGG | + | chr1_1:6189217-6189236 | None:intergenic | 25.0% |
| ! | GCAAACAAGAATATTAAGTT+TGG | + | chr1_1:6189302-6189321 | None:intergenic | 25.0% |
| !! | AGAGTTTAGTTCATATATCA+TGG | - | chr1_1:6189540-6189559 | Msa0003610:intron | 25.0% |
| !!! | TATTTTGATAACTATTTGCC+AGG | - | chr1_1:6189662-6189681 | Msa0003610:intron | 25.0% |
| !! | TTTTCAATCAAGAATTTAGC+TGG | + | chr1_1:6189886-6189905 | None:intergenic | 25.0% |
| ! | TGCTACATCAAAATTAACAA+TGG | - | chr1_1:6189940-6189959 | Msa0003610:intron | 25.0% |
| ! | ACTAAGAAGTTCAAAATTGA+TGG | - | chr1_1:6190082-6190101 | Msa0003610:CDS | 25.0% |
| ! | CTATGATAAATTTCATGATC+TGG | - | chr1_1:6190126-6190145 | Msa0003610:CDS | 25.0% |
| ! | TGTTTATTTCCCTATTACTT+TGG | - | chr1_1:6190153-6190172 | Msa0003610:CDS | 25.0% |
| ! | AAATTCAGTCCAAAGTAATA+GGG | + | chr1_1:6190165-6190184 | None:intergenic | 25.0% |
| ! | ATCATCAATTTAAATTCAGG+TGG | - | chr1_1:6190211-6190230 | Msa0003610:intron | 25.0% |
| ! | ACACAATAAAGAAATGAAAG+GGG | + | chr1_1:6190418-6190437 | None:intergenic | 25.0% |
| !! | TAATACAATGCTTTAGACAT+AGG | - | chr1_1:6190478-6190497 | Msa0003610:intron | 25.0% |
| ! | GAGAAATGAAGAGGATTTTA+GGG | + | chr1_1:6183391-6183410 | None:intergenic | 30.0% |
| ! | TGAGAAATGAAGAGGATTTT+AGG | + | chr1_1:6183392-6183411 | None:intergenic | 30.0% |
| TTATGGTGAGAATTTCAATG+CGG | - | chr1_1:6183688-6183707 | Msa0003610:CDS | 30.0% | |
| GTTGAATGGAAAGAAAGAAA+TGG | - | chr1_1:6184027-6184046 | Msa0003610:CDS | 30.0% | |
| TCCTGTTATTAGAGCAAATT+TGG | - | chr1_1:6184054-6184073 | Msa0003610:CDS | 30.0% | |
| ! | ACCAAATTTGCTCTAATAAC+AGG | + | chr1_1:6184058-6184077 | None:intergenic | 30.0% |
| AACTAAGCGATATATGAGAT+TGG | + | chr1_1:6184149-6184168 | None:intergenic | 30.0% | |
| GATAAGAGTTTATATAGAGG+AGG | - | chr1_1:6184471-6184490 | Msa0003610:intron | 30.0% | |
| TTGCAGGGTTATAAGATTAT+TGG | - | chr1_1:6184613-6184632 | Msa0003610:intron | 30.0% | |
| ! | TGCTACAAGCATTCATTTTA+CGG | - | chr1_1:6184697-6184716 | Msa0003610:CDS | 30.0% |
| !! | GTTTCATTAGCATTTGGTTT+TGG | - | chr1_1:6184777-6184796 | Msa0003610:intron | 30.0% |
| ! | GGTTTTCATTGGCATAAATA+AGG | + | chr1_1:6184876-6184895 | None:intergenic | 30.0% |
| !! | CTTGAGATTTAGGTTTTCAT+TGG | + | chr1_1:6184887-6184906 | None:intergenic | 30.0% |
| TGAAAACCTAAATCTCAAGA+TGG | - | chr1_1:6184888-6184907 | Msa0003610:CDS | 30.0% | |
| ! | TGACAGTTTTTAATCGTTGA+TGG | - | chr1_1:6184948-6184967 | Msa0003610:CDS | 30.0% |
| ! | GCAACTTTTGATCATTTCAT+AGG | - | chr1_1:6185132-6185151 | Msa0003610:intron | 30.0% |
| !!! | TTTTTGGTGCTTGTTATAAG+TGG | - | chr1_1:6185169-6185188 | Msa0003610:intron | 30.0% |
| ! | CAAATAAATGTGTTTTCTGC+TGG | - | chr1_1:6185304-6185323 | Msa0003610:intron | 30.0% |
| ATGCACACTTTCATAAAGTA+GGG | - | chr1_1:6185568-6185587 | Msa0003610:intron | 30.0% | |
| ! | AAACCCCTTTTCAAATTTCT+AGG | - | chr1_1:6185815-6185834 | Msa0003610:intron | 30.0% |
| TCCTCCTAGAAATTTGAAAA+GGG | + | chr1_1:6185822-6185841 | None:intergenic | 30.0% | |
| TGTTCACCTAAAACATCAAT+TGG | - | chr1_1:6185881-6185900 | Msa0003610:intron | 30.0% | |
| GTTCACCTAAAACATCAATT+GGG | - | chr1_1:6185882-6185901 | Msa0003610:intron | 30.0% | |
| ! | TTGTTCCCAATTGATGTTTT+AGG | + | chr1_1:6185890-6185909 | None:intergenic | 30.0% |
| ! | ACATCAATTGGGAACAATTT+TGG | - | chr1_1:6185893-6185912 | Msa0003610:intron | 30.0% |
| AGAGAATAGTCCTTACAATA+AGG | - | chr1_1:6185979-6185998 | Msa0003610:intron | 30.0% | |
| GAGAATAGTCCTTACAATAA+GGG | - | chr1_1:6185980-6185999 | Msa0003610:intron | 30.0% | |
| ATTTCCAACAACAGATAAGT+TGG | - | chr1_1:6186039-6186058 | Msa0003610:intron | 30.0% | |
| ATTTCCAACTTATCTGTTGT+TGG | + | chr1_1:6186046-6186065 | None:intergenic | 30.0% | |
| ATGCTCAAAATTATTTGACG+AGG | - | chr1_1:6186064-6186083 | Msa0003610:intron | 30.0% | |
| TGCTCAAAATTATTTGACGA+GGG | - | chr1_1:6186065-6186084 | Msa0003610:intron | 30.0% | |
| AAAATTATTTGACGAGGGTT+TGG | - | chr1_1:6186070-6186089 | Msa0003610:intron | 30.0% | |
| GAAGAAATAGAGAATTATCC+TGG | - | chr1_1:6186100-6186119 | Msa0003610:intron | 30.0% | |
| TTCATTTCAAACTTGAAGTG+GGG | - | chr1_1:6186168-6186187 | Msa0003610:intron | 30.0% | |
| !! | TTTTCTGTTCACCTTTTTCA+AGG | + | chr1_1:6186475-6186494 | None:intergenic | 30.0% |
| ! | TTTTTGCAGAATGTTTTCCT+TGG | + | chr1_1:6186614-6186633 | None:intergenic | 30.0% |
| ! | AATTATCTGATCAGCTTTTG+AGG | + | chr1_1:6186831-6186850 | Msa0003620:CDS | 30.0% |
| AGAGAATGAGGCAAAAAAAA+AGG | + | chr1_1:6186983-6187002 | Msa0003620:CDS | 30.0% | |
| ACACTTTCTTCTCTCAAAAT+CGG | - | chr1_1:6187035-6187054 | Msa0003610:intron | 30.0% | |
| TTTCATGTCAAACTTGAAGT+GGG | + | chr1_1:6187210-6187229 | Msa0003620:intron | 30.0% | |
| ! | TTTTCATGTCAAACTTGAAG+TGG | + | chr1_1:6187211-6187230 | Msa0003620:intron | 30.0% |
| !! | TTTTCATTGGCTATTGGTTA+TGG | - | chr1_1:6187365-6187384 | Msa0003610:intron | 30.0% |
| AATTATTTGAGGAGGGTTTA+AGG | + | chr1_1:6187642-6187661 | Msa0003620:CDS | 30.0% | |
| TGCTCAAAATTATTTGAGGA+GGG | + | chr1_1:6187649-6187668 | Msa0003620:CDS | 30.0% | |
| ATGCTCAAAATTATTTGAGG+AGG | + | chr1_1:6187650-6187669 | Msa0003620:CDS | 30.0% | |
| TCAAATGGTGCTTTCAATAA+GGG | + | chr1_1:6187725-6187744 | Msa0003620:CDS | 30.0% | |
| GAAATTGAGAGATTCTCAAA+TGG | + | chr1_1:6187740-6187759 | Msa0003620:CDS | 30.0% | |
| TGCTCCAAATAAAATGTCAA+TGG | - | chr1_1:6187872-6187891 | Msa0003610:intron | 30.0% | |
| ATAGTACTTTCTAATGCCTT+TGG | - | chr1_1:6188254-6188273 | Msa0003610:intron | 30.0% | |
| !!! | CAGCATCGTTTTAATTAAAC+GGG | + | chr1_1:6188497-6188516 | None:intergenic | 30.0% |
| !!! | GTTGGACGTGTTTTATTTTT+GGG | + | chr1_1:6188532-6188551 | None:intergenic | 30.0% |
| ! | GCTCATTTAACTCTTTTTGT+AGG | - | chr1_1:6189037-6189056 | Msa0003610:intron | 30.0% |
| TGCATTTGTAACTAGAAAAG+TGG | + | chr1_1:6189188-6189207 | None:intergenic | 30.0% | |
| CAAATAAATGCATTTCAGCT+AGG | + | chr1_1:6189515-6189534 | None:intergenic | 30.0% | |
| TGATAAATTTCATGATCTGG+TGG | - | chr1_1:6190129-6190148 | Msa0003610:CDS | 30.0% | |
| GATAAATTTCATGATCTGGT+GGG | - | chr1_1:6190130-6190149 | Msa0003610:CDS | 30.0% | |
| CAAATTCAGTCCAAAGTAAT+AGG | + | chr1_1:6190166-6190185 | None:intergenic | 30.0% | |
| CTATTACTTTGGACTGAATT+TGG | - | chr1_1:6190164-6190183 | Msa0003610:CDS | 30.0% | |
| ! | TTTTGACAGCAAAGATTACA+TGG | - | chr1_1:6190247-6190266 | Msa0003610:intron | 30.0% |
| AAAGAATCAGGTTAGAAGTT+AGG | - | chr1_1:6190368-6190387 | Msa0003610:CDS | 30.0% | |
| TAAAGAAATGAAAGGGGAAA+TGG | + | chr1_1:6190412-6190431 | None:intergenic | 30.0% | |
| ! | TTGCTAGCATAGTAGTATTT+TGG | - | chr1_1:6190699-6190718 | Msa0003610:CDS | 30.0% |
| !!! | TAGTATTTTGGTTTGAAGAG+AGG | - | chr1_1:6190711-6190730 | Msa0003610:CDS | 30.0% |
| GGATTTGTAGAAGAAGTAGA+AGG | + | chr1_1:6183312-6183331 | None:intergenic | 35.0% | |
| !!! | AGCTTAGGGTTAGTTGTTTT+AGG | + | chr1_1:6183349-6183368 | None:intergenic | 35.0% |
| !!! | TGAAGAGGATTTTAGGGTTA+GGG | + | chr1_1:6183385-6183404 | None:intergenic | 35.0% |
| !!! | ATGAAGAGGATTTTAGGGTT+AGG | + | chr1_1:6183386-6183405 | None:intergenic | 35.0% |
| !! | TGTTGGTTTGAGAAATGAAG+AGG | + | chr1_1:6183400-6183419 | None:intergenic | 35.0% |
| AGTATAAATTCTTCGCCGAT+TGG | - | chr1_1:6183579-6183598 | Msa0003610:three_prime_UTR | 35.0% | |
| TTTGTCGAAGTGTAGATTTG+CGG | - | chr1_1:6183643-6183662 | Msa0003610:three_prime_UTR | 35.0% | |
| AAGTGTAGATTTGCGGTATT+CGG | - | chr1_1:6183650-6183669 | Msa0003610:exon | 35.0% | |
| TTGGTAAGGAGATTGTGAAA+CGG | - | chr1_1:6183711-6183730 | Msa0003610:CDS | 35.0% | |
| AAGGTTGTTGGAATACTGAA+AGG | - | chr1_1:6183827-6183846 | Msa0003610:intron | 35.0% | |
| !! | ATACTGAAAGGTGTTGATGA+TGG | - | chr1_1:6183839-6183858 | Msa0003610:intron | 35.0% |
| GTTGATCTTGAAGATATTGC+CGG | - | chr1_1:6183953-6183972 | Msa0003610:CDS | 35.0% | |
| ! | CAGAAGAGCTATTGTGATTT+TGG | - | chr1_1:6184203-6184222 | Msa0003610:intron | 35.0% |
| AGTGATATTGCTTGCTTACT+TGG | - | chr1_1:6184232-6184251 | Msa0003610:CDS | 35.0% | |
| TTGCTTACTTGGTACTTGTT+TGG | - | chr1_1:6184243-6184262 | Msa0003610:CDS | 35.0% | |
| TCATAATTCGGACAAACTCA+CGG | + | chr1_1:6184274-6184293 | None:intergenic | 35.0% | |
| ! | TGGATTTTGCAAGATCACTA+TGG | - | chr1_1:6184331-6184350 | Msa0003610:CDS | 35.0% |
| ! | GAGTCTTATCTATCTGATGT+GGG | + | chr1_1:6184449-6184468 | None:intergenic | 35.0% |
| ! | AGAGTCTTATCTATCTGATG+TGG | + | chr1_1:6184450-6184469 | None:intergenic | 35.0% |
| CTAACTCAACCTTACAAAAC+CGG | + | chr1_1:6184515-6184534 | None:intergenic | 35.0% | |
| !! | AAGATTATTGGTTCACACAG+TGG | - | chr1_1:6184625-6184644 | Msa0003610:intron | 35.0% |
| TTTACGGAATTGAGAGTCAT+AGG | - | chr1_1:6184713-6184732 | Msa0003610:intron | 35.0% | |
| GTTCACGTTTCATTAGCATT+TGG | - | chr1_1:6184771-6184790 | Msa0003610:intron | 35.0% | |
| !!! | TCATTAGCATTTGGTTTTGG+TGG | - | chr1_1:6184780-6184799 | Msa0003610:intron | 35.0% |
| ! | CTTTGTGTTGGTATTTGACA+TGG | - | chr1_1:6185055-6185074 | Msa0003610:intron | 35.0% |
| TTATGAGTGAAATAGGTGCA+TGG | - | chr1_1:6185257-6185276 | Msa0003610:intron | 35.0% | |
| ! | ATAAATGTGTTTTCTGCTGG+AGG | - | chr1_1:6185307-6185326 | Msa0003610:intron | 35.0% |
| AAATCCAGTAGCGAAAAGTT+GGG | - | chr1_1:6185338-6185357 | Msa0003610:intron | 35.0% | |
| AAACAAATGAAAGGAGTTCC+TGG | - | chr1_1:6185426-6185445 | Msa0003610:intron | 35.0% | |
| CATGCACACTTTCATAAAGT+AGG | - | chr1_1:6185567-6185586 | Msa0003610:intron | 35.0% | |
| AAGTAGGGTAAGTTTCATAC+CGG | - | chr1_1:6185583-6185602 | Msa0003610:intron | 35.0% | |
| AGATTATAATGTTTGCGTGC+AGG | - | chr1_1:6185623-6185642 | Msa0003610:intron | 35.0% | |
| TGAAAAGGGGTTTGTCTTTA+GGG | + | chr1_1:6185808-6185827 | None:intergenic | 35.0% | |
| TTGAAAAGGGGTTTGTCTTT+AGG | + | chr1_1:6185809-6185828 | None:intergenic | 35.0% | |
| CCTCCTAGAAATTTGAAAAG+GGG | + | chr1_1:6185821-6185840 | None:intergenic | 35.0% | |
| GTCCTCCTAGAAATTTGAAA+AGG | + | chr1_1:6185823-6185842 | None:intergenic | 35.0% | |
| TGGAACATCTATGCATGAAA+TGG | - | chr1_1:6185913-6185932 | Msa0003610:intron | 35.0% | |
| TACTGTTCTCCCTTATTGTA+AGG | + | chr1_1:6185992-6186011 | None:intergenic | 35.0% | |
| !! | ACACGATTTTGAGAGAAGAA+AGG | - | chr1_1:6186337-6186356 | Msa0003610:intron | 35.0% |
| !! | CACGATTTTGAGAGAAGAAA+GGG | - | chr1_1:6186338-6186357 | Msa0003610:intron | 35.0% |
| !! | ACTCTTTGAAGTCGTAGAAT+CGG | - | chr1_1:6186375-6186394 | Msa0003610:intron | 35.0% |
| ! | ATTTCTGAAAACCTTTGCCT+TGG | - | chr1_1:6186407-6186426 | Msa0003610:intron | 35.0% |
| !!! | TTTTTCAAGGAAGGAAATCG+AGG | + | chr1_1:6186462-6186481 | None:intergenic | 35.0% |
| TCGATTTCCTTCCTTGAAAA+AGG | - | chr1_1:6186461-6186480 | Msa0003610:intron | 35.0% | |
| TTCATCAAAAACCAAGGCAA+AGG | + | chr1_1:6186510-6186529 | None:intergenic | 35.0% | |
| GGTTAATGCTGAAATGTATG+AGG | + | chr1_1:6186576-6186595 | None:intergenic | 35.0% | |
| ! | AGAATGTTTTCCTTGGATTG+CGG | + | chr1_1:6186607-6186626 | None:intergenic | 35.0% |
| GAAGATTTCATAGCATGCTT+GGG | + | chr1_1:6186796-6186815 | None:intergenic | 35.0% | |
| TTCACTTCTACGAGAATTGA+TGG | + | chr1_1:6186916-6186935 | Msa0003620:CDS | 35.0% | |
| CACTTTCTTCTCTCAAAATC+GGG | - | chr1_1:6187036-6187055 | Msa0003610:intron | 35.0% | |
| TTCATGTCAAACTTGAAGTG+GGG | + | chr1_1:6187209-6187228 | Msa0003620:intron | 35.0% | |
| CTCAAATGGTGCTTTCAATA+AGG | + | chr1_1:6187726-6187745 | Msa0003620:CDS | 35.0% | |
| TCATTTATGCAGAGAGCTAT+GGG | + | chr1_1:6188020-6188039 | None:intergenic | 35.0% | |
| TTCATTTATGCAGAGAGCTA+TGG | + | chr1_1:6188021-6188040 | None:intergenic | 35.0% | |
| GAAAACACATGTTTGCAATC+AGG | - | chr1_1:6188052-6188071 | Msa0003610:intron | 35.0% | |
| AGAATTCAGCACATCATAGA+TGG | + | chr1_1:6188096-6188115 | None:intergenic | 35.0% | |
| ATCTATGATGTGCTGAATTC+TGG | - | chr1_1:6188095-6188114 | Msa0003610:intron | 35.0% | |
| !! | TTCATCGTTTTTGCGACTTT+CGG | + | chr1_1:6188411-6188430 | None:intergenic | 35.0% |
| CATAACAAGTACAGTAACGA+TGG | + | chr1_1:6188443-6188462 | None:intergenic | 35.0% | |
| !!! | CGTTGGACGTGTTTTATTTT+TGG | + | chr1_1:6188533-6188552 | None:intergenic | 35.0% |
| CAAAATCCTAGACAAGATCA+GGG | + | chr1_1:6188848-6188867 | None:intergenic | 35.0% | |
| TCAAAATCCTAGACAAGATC+AGG | + | chr1_1:6188849-6188868 | None:intergenic | 35.0% | |
| TCAAAATGATATAACGGTGC+TGG | + | chr1_1:6188953-6188972 | None:intergenic | 35.0% | |
| CTAATTATATGCAGAACGGT+GGG | + | chr1_1:6189006-6189025 | None:intergenic | 35.0% | |
| ACTAATTATATGCAGAACGG+TGG | + | chr1_1:6189007-6189026 | None:intergenic | 35.0% | |
| CATTGTGCATTATCTCTTGT+TGG | - | chr1_1:6189100-6189119 | Msa0003610:intron | 35.0% | |
| TCCAGAGATAAATACACTTG+TGG | - | chr1_1:6189138-6189157 | Msa0003610:intron | 35.0% | |
| TCCACAAGTGTATTTATCTC+TGG | + | chr1_1:6189142-6189161 | None:intergenic | 35.0% | |
| ! | TTCTGAAAACCTCAAAACCT+GGG | + | chr1_1:6189248-6189267 | None:intergenic | 35.0% |
| ! | ATTCTGAAAACCTCAAAACC+TGG | + | chr1_1:6189249-6189268 | None:intergenic | 35.0% |
| TTATATGTCAGTGTAGATGC+CGG | - | chr1_1:6189331-6189350 | Msa0003610:CDS | 35.0% | |
| ACATAGACAATGTGATCAAG+AGG | + | chr1_1:6189643-6189662 | None:intergenic | 35.0% | |
| ACCCTTGATTTCAATGAAGT+CGG | + | chr1_1:6189805-6189824 | None:intergenic | 35.0% | |
| !! | ATCAAGGGTGTTACATATTG+TGG | - | chr1_1:6189816-6189835 | Msa0003610:intron | 35.0% |
| AAGAATTTAGCTGGACTAAG+GGG | + | chr1_1:6189877-6189896 | None:intergenic | 35.0% | |
| CAAGAATTTAGCTGGACTAA+GGG | + | chr1_1:6189878-6189897 | None:intergenic | 35.0% | |
| TCAAGAATTTAGCTGGACTA+AGG | + | chr1_1:6189879-6189898 | None:intergenic | 35.0% | |
| AGTTCATTGTCATTCGAAGA+TGG | + | chr1_1:6189909-6189928 | None:intergenic | 35.0% | |
| AATGACAATGAACTCTTCTC+AGG | - | chr1_1:6189915-6189934 | Msa0003610:intron | 35.0% | |
| TAACAATGGAAAATGTCCCT+TGG | - | chr1_1:6189954-6189973 | Msa0003610:intron | 35.0% | |
| !! | ACTTCTTAGTTTTTGCCAAG+AGG | + | chr1_1:6190072-6190091 | None:intergenic | 35.0% |
| ATTTAAATTCAGGTGGCTTC+TGG | - | chr1_1:6190218-6190237 | Msa0003610:intron | 35.0% | |
| ACTTCTAACCTGATTCTTTG+CGG | + | chr1_1:6190367-6190386 | None:intergenic | 35.0% | |
| ACATTGGGACTTAAATACAC+TGG | + | chr1_1:6190514-6190533 | None:intergenic | 35.0% | |
| ! | ACGCAATGCTATTTATTGCA+AGG | + | chr1_1:6190657-6190676 | None:intergenic | 35.0% |
| TTGAAGAGAGGTAGATAAAG+TGG | - | chr1_1:6190723-6190742 | Msa0003610:CDS | 35.0% | |
| GTAGAAGAAGTAGAAGGTTG+TGG | + | chr1_1:6183306-6183325 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTAGGCTTCGTAAG+CGG | + | chr1_1:6183337-6183356 | None:intergenic | 40.0% |
| !!! | AGGATTTTAGGGTTAGGGTT+GGG | + | chr1_1:6183380-6183399 | None:intergenic | 40.0% |
| !! | ATAAGGAGAAGCGTTTCCTT+GGG | + | chr1_1:6183521-6183540 | None:intergenic | 40.0% |
| TCGGCGAAGAATTTATACTC+CGG | + | chr1_1:6183578-6183597 | None:intergenic | 40.0% | |
| !!! | AGTTCGGAGGATTTTAGAGT+TGG | - | chr1_1:6183611-6183630 | Msa0003610:three_prime_UTR | 40.0% |
| ! | GAATTTCAATGCGGTTGGTA+AGG | - | chr1_1:6183697-6183716 | Msa0003610:CDS | 40.0% |
| !! | TGGATGAGGTTTTTGAGAAG+TGG | - | chr1_1:6183798-6183817 | Msa0003610:CDS | 40.0% |
| !! | AGGTTTTTGAGAAGTGGTGT+GGG | - | chr1_1:6183804-6183823 | Msa0003610:intron | 40.0% |
| !! | TGTTGATGATGGTGGTGATT+TGG | - | chr1_1:6183850-6183869 | Msa0003610:intron | 40.0% |
| TGATGAAGAAGAGTCTGATG+AGG | - | chr1_1:6183907-6183926 | Msa0003610:CDS | 40.0% | |
| ! | GAGAGTAATGGGAAGTTGAA+TGG | - | chr1_1:6184013-6184032 | Msa0003610:CDS | 40.0% |
| ! | TAGAGCAAATTTGGTGAAGC+AGG | - | chr1_1:6184063-6184082 | Msa0003610:CDS | 40.0% |
| ! | ATTTTGCGAAAGCTACACTC+TGG | - | chr1_1:6184306-6184325 | Msa0003610:CDS | 40.0% |
| ATCTATCTGATGTGGGACTT+GGG | + | chr1_1:6184442-6184461 | None:intergenic | 40.0% | |
| TATCTATCTGATGTGGGACT+TGG | + | chr1_1:6184443-6184462 | None:intergenic | 40.0% | |
| ! | GTGGTGTCAAGATTTGTAGA+TGG | - | chr1_1:6184644-6184663 | Msa0003610:CDS | 40.0% |
| CAAGCTCCATCTTGAGATTT+AGG | + | chr1_1:6184897-6184916 | None:intergenic | 40.0% | |
| TTCGATGTACGTTTCATCGA+TGG | - | chr1_1:6184923-6184942 | Msa0003610:CDS | 40.0% | |
| GGCTTAGAAGAAGAATGTTC+TGG | - | chr1_1:6185076-6185095 | Msa0003610:intron | 40.0% | |
| TATTTGCACATGCCAAGCTA+GGG | + | chr1_1:6185290-6185309 | None:intergenic | 40.0% | |
| TTATTTGCACATGCCAAGCT+AGG | + | chr1_1:6185291-6185310 | None:intergenic | 40.0% | |
| CAAATCCAGTAGCGAAAAGT+TGG | - | chr1_1:6185337-6185356 | Msa0003610:intron | 40.0% | |
| GCAGAATTCACGATCTCTAT+TGG | + | chr1_1:6185381-6185400 | None:intergenic | 40.0% | |
| !! | ACACATTGTTGTCAGGTTGA+TGG | - | chr1_1:6185496-6185515 | Msa0003610:intron | 40.0% |
| ! | ACTGGAGTATTTAGGGAAAG+AGG | + | chr1_1:6185767-6185786 | None:intergenic | 40.0% |
| !! | CCCCTTTTCAAATTTCTAGG+AGG | - | chr1_1:6185818-6185837 | Msa0003610:intron | 40.0% |
| GTTGAAGAAAGCGAGACAAA+TGG | - | chr1_1:6186122-6186141 | Msa0003610:intron | 40.0% | |
| ! | GTTAGACATTGAAGCACTAG+CGG | + | chr1_1:6186238-6186257 | None:intergenic | 40.0% |
| GTCTAACTCCAACGAATCAA+CGG | - | chr1_1:6186251-6186270 | Msa0003610:intron | 40.0% | |
| AAAACCTTTGCCTTGGTTGA+CGG | - | chr1_1:6186414-6186433 | Msa0003610:intron | 40.0% | |
| GGAAATCGAGGAAGATTTCA+TGG | + | chr1_1:6186450-6186469 | None:intergenic | 40.0% | |
| !!! | CTGTTCACCTTTTTCAAGGA+AGG | + | chr1_1:6186471-6186490 | None:intergenic | 40.0% |
| TTTCCTTGGATTGCGGTTAA+GGG | + | chr1_1:6186600-6186619 | None:intergenic | 40.0% | |
| ! | TTTTCCTTGGATTGCGGTTA+AGG | + | chr1_1:6186601-6186620 | None:intergenic | 40.0% |
| AACTGTTTCCGAACAACTCT+AGG | - | chr1_1:6186739-6186758 | Msa0003610:intron | 40.0% | |
| GGAAGATTTCATAGCATGCT+TGG | + | chr1_1:6186797-6186816 | None:intergenic | 40.0% | |
| !! | ATCTGATCAGCTTTTGAGGA+AGG | + | chr1_1:6186827-6186846 | Msa0003620:CDS | 40.0% |
| ACTTCTACGAGAATTGATGG+CGG | + | chr1_1:6186913-6186932 | Msa0003620:CDS | 40.0% | |
| AGTTGTGGAATCAGAGAATG+AGG | + | chr1_1:6186995-6187014 | Msa0003620:CDS | 40.0% | |
| GTCTTTCATTCTATCTGTGG+CGG | - | chr1_1:6187058-6187077 | Msa0003610:intron | 40.0% | |
| !! | AGCACCGACAATATCGATAA+TGG | - | chr1_1:6187151-6187170 | Msa0003610:intron | 40.0% |
| GCTGCCATTATCGATATTGT+CGG | + | chr1_1:6187158-6187177 | Msa0003620:intron | 40.0% | |
| ! | TGCTTATAATTTGGGACGGA+GGG | + | chr1_1:6187243-6187262 | Msa0003620:CDS | 40.0% |
| ! | TTGCTTATAATTTGGGACGG+AGG | + | chr1_1:6187244-6187263 | Msa0003620:CDS | 40.0% |
| TTGCTTATATTATGGGACGG+AGG | - | chr1_1:6187547-6187566 | Msa0003610:intron | 40.0% | |
| TGCTTATATTATGGGACGGA+GGG | - | chr1_1:6187548-6187567 | Msa0003610:intron | 40.0% | |
| ! | TTGACTCGCTTTCTTCAATC+TGG | - | chr1_1:6187593-6187612 | Msa0003610:intron | 40.0% |
| TTGTTTACCTCCTCTCAGAT+GGG | + | chr1_1:6187979-6187998 | None:intergenic | 40.0% | |
| ATTGTTTACCTCCTCTCAGA+TGG | + | chr1_1:6187980-6187999 | None:intergenic | 40.0% | |
| AGTACTTTGTGGATAGTGAC+AGG | + | chr1_1:6188144-6188163 | None:intergenic | 40.0% | |
| ATGCCTTTGGATTTGTGTGA+TGG | - | chr1_1:6188267-6188286 | Msa0003610:intron | 40.0% | |
| ATGCCATCACACAAATCCAA+AGG | + | chr1_1:6188273-6188292 | None:intergenic | 40.0% | |
| !!! | GATCACGATTTTGACTACCT+AGG | + | chr1_1:6188298-6188317 | None:intergenic | 40.0% |
| AAAATCGTGATCCAACTCGT+AGG | - | chr1_1:6188306-6188325 | Msa0003610:intron | 40.0% | |
| !!! | CGTTTTAATTAAACGGGTCG+TGG | + | chr1_1:6188491-6188510 | None:intergenic | 40.0% |
| GCAACTTTGCAATGCCAATA+TGG | + | chr1_1:6188899-6188918 | None:intergenic | 40.0% | |
| !!! | TCATTTTGACTGATACTGGG+AGG | - | chr1_1:6188964-6188983 | Msa0003610:intron | 40.0% |
| ! | TCTTTTTGTAGGAGTCACCT+CGG | - | chr1_1:6189048-6189067 | Msa0003610:intron | 40.0% |
| TTGTGGATGAGTTGCACAAA+AGG | - | chr1_1:6189155-6189174 | Msa0003610:intron | 40.0% | |
| AACCTCAAAACCTGGGTAAT+AGG | + | chr1_1:6189241-6189260 | None:intergenic | 40.0% | |
| CTTAAGAGAGTCCTTTGTTC+CGG | + | chr1_1:6189353-6189372 | None:intergenic | 40.0% | |
| ! | ACCACTCTTTGGAGATTTCT+GGG | - | chr1_1:6189384-6189403 | Msa0003610:CDS | 40.0% |
| CATGATCACCATCTGAAGAA+GGG | - | chr1_1:6189574-6189593 | Msa0003610:intron | 40.0% | |
| ATGATCACCATCTGAAGAAG+GGG | - | chr1_1:6189575-6189594 | Msa0003610:intron | 40.0% | |
| ! | TTTTTCCTTCAGAGCAGTCA+AGG | + | chr1_1:6189691-6189710 | None:intergenic | 40.0% |
| AGCATTCCATCCTTTCACAA+GGG | + | chr1_1:6189739-6189758 | None:intergenic | 40.0% | |
| ACCCGACTTCATTGAAATCA+AGG | - | chr1_1:6189800-6189819 | Msa0003610:intron | 40.0% | |
| CCCTTGATTTCAATGAAGTC+GGG | + | chr1_1:6189804-6189823 | None:intergenic | 40.0% | |
| CCCGACTTCATTGAAATCAA+GGG | - | chr1_1:6189801-6189820 | Msa0003610:intron | 40.0% | |
| TAGAGATAGAGAGAGAAGAG+GGG | + | chr1_1:6189854-6189873 | None:intergenic | 40.0% | |
| GTAGAGATAGAGAGAGAAGA+GGG | + | chr1_1:6189855-6189874 | None:intergenic | 40.0% | |
| ! | AGTTCAAAATTGATGGCCAG+TGG | - | chr1_1:6190089-6190108 | Msa0003610:CDS | 40.0% |
| AGTCTATCCATGTATACCAC+TGG | + | chr1_1:6190108-6190127 | None:intergenic | 40.0% | |
| ATCCAGGACAGTTGAGATAT+AGG | - | chr1_1:6190318-6190337 | Msa0003610:CDS | 40.0% | |
| TTCCTATATCTCAACTGTCC+TGG | + | chr1_1:6190323-6190342 | None:intergenic | 40.0% | |
| AGGTTAGAAGTTAGGCCTTT+GGG | - | chr1_1:6190376-6190395 | Msa0003610:CDS | 40.0% | |
| ATGAAAGGGGAAATGGATGT+TGG | + | chr1_1:6190405-6190424 | None:intergenic | 40.0% | |
| CCTCGAATTGGGAAAACATT+GGG | + | chr1_1:6190529-6190548 | None:intergenic | 40.0% | |
| TTCCTCAATTGCCTCGAATT+GGG | + | chr1_1:6190540-6190559 | None:intergenic | 40.0% | |
| TTTCCTCAATTGCCTCGAAT+TGG | + | chr1_1:6190541-6190560 | None:intergenic | 40.0% | |
| GAAGAAGTAGAAGGTTGTGG+CGG | + | chr1_1:6183303-6183322 | None:intergenic | 45.0% | |
| !!! | GGATTTTAGGGTTAGGGTTG+GGG | + | chr1_1:6183379-6183398 | None:intergenic | 45.0% |
| !!! | GAGGATTTTAGGGTTAGGGT+TGG | + | chr1_1:6183381-6183400 | None:intergenic | 45.0% |
| !!! | AGAGAGGGTTTTGGAAGTGT+TGG | + | chr1_1:6183417-6183436 | None:intergenic | 45.0% |
| ! | GGTTGTTTGAGGTGAGGAAA+CGG | + | chr1_1:6183451-6183470 | None:intergenic | 45.0% |
| ! | ATGCAAGGTTGTTTGAGGTG+AGG | + | chr1_1:6183457-6183476 | None:intergenic | 45.0% |
| GTCGAATGCAAGGTTGTTTG+AGG | + | chr1_1:6183462-6183481 | None:intergenic | 45.0% | |
| CATCGATGATGTCGAATGCA+AGG | + | chr1_1:6183472-6183491 | None:intergenic | 45.0% | |
| CTTGCATTCGACATCATCGA+TGG | - | chr1_1:6183470-6183489 | Msa0003610:intron | 45.0% | |
| !! | TAAGGAGAAGCGTTTCCTTG+GGG | + | chr1_1:6183520-6183539 | None:intergenic | 45.0% |
| !! | GATAAGGAGAAGCGTTTCCT+TGG | + | chr1_1:6183522-6183541 | None:intergenic | 45.0% |
| TCCTTATCGTTGCTTCCACT+TGG | - | chr1_1:6183534-6183553 | Msa0003610:three_prime_UTR | 45.0% | |
| CCTTATCGTTGCTTCCACTT+GGG | - | chr1_1:6183535-6183554 | Msa0003610:three_prime_UTR | 45.0% | |
| AAGAATTTATACTCCGGCGG+TGG | + | chr1_1:6183572-6183591 | None:intergenic | 45.0% | |
| GCGAAGAATTTATACTCCGG+CGG | + | chr1_1:6183575-6183594 | None:intergenic | 45.0% | |
| !! | AGATTTGCGGTATTCGGTGT+CGG | - | chr1_1:6183656-6183675 | Msa0003610:exon | 45.0% |
| GGTGAGAATTTCAATGCGGT+TGG | - | chr1_1:6183692-6183711 | Msa0003610:CDS | 45.0% | |
| GGAGATTGTGAAACGGATGA+AGG | - | chr1_1:6183718-6183737 | Msa0003610:CDS | 45.0% | |
| ! | TGGTAACGAGATGATTCCGT+TGG | - | chr1_1:6183748-6183767 | Msa0003610:CDS | 45.0% |
| GGTAACGAGATGATTCCGTT+GGG | - | chr1_1:6183749-6183768 | Msa0003610:CDS | 45.0% | |
| GTAACGAGATGATTCCGTTG+GGG | - | chr1_1:6183750-6183769 | Msa0003610:CDS | 45.0% | |
| TAACGAGATGATTCCGTTGG+GGG | - | chr1_1:6183751-6183770 | Msa0003610:CDS | 45.0% | |
| !! | GAGGTTTTTGAGAAGTGGTG+TGG | - | chr1_1:6183803-6183822 | Msa0003610:intron | 45.0% |
| !! | TTTTGAGAAGTGGTGTGGGA+AGG | - | chr1_1:6183808-6183827 | Msa0003610:intron | 45.0% |
| !! | CTGAAAGGTGTTGATGATGG+TGG | - | chr1_1:6183842-6183861 | Msa0003610:intron | 45.0% |
| ! | TGGTGATTTGGAGAATGCTG+AGG | - | chr1_1:6183862-6183881 | Msa0003610:intron | 45.0% |
| ! | TGATTTGGAGAATGCTGAGG+AGG | - | chr1_1:6183865-6183884 | Msa0003610:intron | 45.0% |
| TGAAGAAGAGTCTGATGAGG+AGG | - | chr1_1:6183910-6183929 | Msa0003610:CDS | 45.0% | |
| CTACGGTGAAGGAGAGTAAT+GGG | - | chr1_1:6184002-6184021 | Msa0003610:CDS | 45.0% | |
| GTCCGAATTATGATGACCCA+CGG | - | chr1_1:6184281-6184300 | Msa0003610:CDS | 45.0% | |
| CACCGTGGGTCATCATAATT+CGG | + | chr1_1:6184286-6184305 | None:intergenic | 45.0% | |
| AGCTTTCGCAAAATCACCGT+GGG | + | chr1_1:6184300-6184319 | None:intergenic | 45.0% | |
| TAGCTTTCGCAAAATCACCG+TGG | + | chr1_1:6184301-6184320 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr1_1:6184506-6184525 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr1_1:6184503-6184522 | Msa0003610:intron | 45.0% |
| TCGTTTATGTGTCGTGCTAG+CGG | - | chr1_1:6184811-6184830 | Msa0003610:CDS | 45.0% | |
| TGAGTGAAATAGGTGCATGG+AGG | - | chr1_1:6185260-6185279 | Msa0003610:intron | 45.0% | |
| ATTTGCACATGCCAAGCTAG+GGG | + | chr1_1:6185289-6185308 | None:intergenic | 45.0% | |
| AGTAGCGAAAAGTTGGGTGT+GGG | - | chr1_1:6185344-6185363 | Msa0003610:intron | 45.0% | |
| TGTTTGCGTGCAGGAGTTTA+AGG | - | chr1_1:6185632-6185651 | Msa0003610:intron | 45.0% | |
| GTTTGCGTGCAGGAGTTTAA+GGG | - | chr1_1:6185633-6185652 | Msa0003610:intron | 45.0% | |
| TTGTCTCGCTTTCTTCAACC+AGG | + | chr1_1:6186121-6186140 | None:intergenic | 45.0% | |
| !! | AGCACTAGCGGTATCGATAA+CGG | + | chr1_1:6186226-6186245 | None:intergenic | 45.0% |
| GAAGATTTCATGGCATGGCT+GGG | + | chr1_1:6186440-6186459 | None:intergenic | 45.0% | |
| TCGAGGAAGATTTCATGGCA+TGG | + | chr1_1:6186445-6186464 | None:intergenic | 45.0% | |
| TTCGCATGAAACCTTTGCCT+TGG | - | chr1_1:6186496-6186515 | Msa0003610:intron | 45.0% | |
| ATTTCATAGCATGCTTGGGC+CGG | + | chr1_1:6186792-6186811 | None:intergenic | 45.0% | |
| !! | GCTTTTGAGGAAGGAAATCG+AGG | + | chr1_1:6186818-6186837 | None:intergenic | 45.0% |
| GCGGCAATAATGTTTCATCC+AGG | + | chr1_1:6186894-6186913 | Msa0003620:CDS | 45.0% | |
| ACGTTTCGCATTACCAGAGA+CGG | - | chr1_1:6186939-6186958 | Msa0003610:intron | 45.0% | |
| GCATTACCAGAGACGGTAAT+CGG | - | chr1_1:6186946-6186965 | Msa0003610:intron | 45.0% | |
| CGGGTCTTTCATTCTATCTG+TGG | - | chr1_1:6187055-6187074 | Msa0003610:intron | 45.0% | |
| ! | GACGGAGGGAGTATATTGTT+GGG | - | chr1_1:6187562-6187581 | Msa0003610:intron | 45.0% |
| GTTGTAGCTCTCTACAACAC+AGG | - | chr1_1:6187929-6187948 | Msa0003610:intron | 45.0% | |
| TGATGTGCTGAATTCTGGTC+TGG | - | chr1_1:6188100-6188119 | Msa0003610:intron | 45.0% | |
| TTTGTGTGATGGCATGACCT+AGG | - | chr1_1:6188278-6188297 | Msa0003610:intron | 45.0% | |
| AATCGTACGATCCTACGAGT+TGG | + | chr1_1:6188320-6188339 | None:intergenic | 45.0% | |
| !! | ATCGTTTTTGCGACTTTCGG+CGG | + | chr1_1:6188408-6188427 | None:intergenic | 45.0% |
| ATAAAACACGTCCAACGCTG+TGG | - | chr1_1:6188536-6188555 | Msa0003610:intron | 45.0% | |
| CAAATAGGAAACCACAGCGT+TGG | + | chr1_1:6188550-6188569 | None:intergenic | 45.0% | |
| TGTTGGCGTGTAGCACAAAT+AGG | + | chr1_1:6188565-6188584 | None:intergenic | 45.0% | |
| ATCCTTCCCTGATCTTGTCT+AGG | - | chr1_1:6188839-6188858 | Msa0003610:intron | 45.0% | |
| ATCCTAGACAAGATCAGGGA+AGG | + | chr1_1:6188844-6188863 | None:intergenic | 45.0% | |
| ! | TAACTGAAGGCATGACACCA+CGG | - | chr1_1:6189077-6189096 | Msa0003610:intron | 45.0% |
| AGAGATAATGCACAATGCCG+TGG | + | chr1_1:6189097-6189116 | None:intergenic | 45.0% | |
| TGGATGAGTTGCACAAAAGG+AGG | - | chr1_1:6189158-6189177 | Msa0003610:intron | 45.0% | |
| ! | AGCCTATTACCCAGGTTTTG+AGG | - | chr1_1:6189236-6189255 | Msa0003610:intron | 45.0% |
| CGGAACAAAGGACTCTCTTA+AGG | - | chr1_1:6189351-6189370 | Msa0003610:CDS | 45.0% | |
| GCAATCGATAGACCACTCTT+TGG | - | chr1_1:6189373-6189392 | Msa0003610:CDS | 45.0% | |
| ! | GACCACTCTTTGGAGATTTC+TGG | - | chr1_1:6189383-6189402 | Msa0003610:CDS | 45.0% |
| TCCCAGAAATCTCCAAAGAG+TGG | + | chr1_1:6189388-6189407 | None:intergenic | 45.0% | |
| GCATGATCACCATCTGAAGA+AGG | - | chr1_1:6189573-6189592 | Msa0003610:intron | 45.0% | |
| CAGCATTCCATCCTTTCACA+AGG | + | chr1_1:6189740-6189759 | None:intergenic | 45.0% | |
| AGAGATAGAGAGAGAAGAGG+GGG | + | chr1_1:6189853-6189872 | None:intergenic | 45.0% | |
| GGTAGAGATAGAGAGAGAAG+AGG | + | chr1_1:6189856-6189875 | None:intergenic | 45.0% | |
| ! | CTCTGTCTCTGAAAAGCCAA+GGG | - | chr1_1:6190005-6190024 | Msa0003610:CDS | 45.0% |
| ! | TCTGTCTCTGAAAAGCCAAG+GGG | - | chr1_1:6190006-6190025 | Msa0003610:CDS | 45.0% |
| ! | TTGATGGCCAGTGGTATACA+TGG | - | chr1_1:6190098-6190117 | Msa0003610:CDS | 45.0% |
| CAGGTTAGAAGTTAGGCCTT+TGG | - | chr1_1:6190375-6190394 | Msa0003610:CDS | 45.0% | |
| ! | AATGGATGTTGGCTACCCAA+AGG | + | chr1_1:6190394-6190413 | None:intergenic | 45.0% |
| ! | CCCAATGTTTTCCCAATTCG+AGG | - | chr1_1:6190526-6190545 | Msa0003610:intron | 45.0% |
| GCCTCGAATTGGGAAAACAT+TGG | + | chr1_1:6190530-6190549 | None:intergenic | 45.0% | |
| TTCCCAATTCGAGGCAATTG+AGG | - | chr1_1:6190535-6190554 | Msa0003610:intron | 45.0% | |
| !! | AAAAAAAAAAAAATCAAATT+AGG | - | chr1_1:6186630-6186649 | Msa0003610:intron | 5.0% |
| !! | TTAAAAAAAAAAGATTAAAT+AGG | - | chr1_1:6187471-6187490 | Msa0003610:intron | 5.0% |
| !!! | TAAGAAAATATTTTTTTTTA+TGG | - | chr1_1:6188704-6188723 | Msa0003610:CDS | 5.0% |
| !!! | AAGAAAATATTTTTTTTTAT+GGG | - | chr1_1:6188705-6188724 | Msa0003610:CDS | 5.0% |
| !!! | TTTTTATAAATAAGTAAAAT+CGG | - | chr1_1:6188924-6188943 | Msa0003610:intron | 5.0% |
| ! | TTTTAGGCTTCGTAAGCGGC+GGG | + | chr1_1:6183333-6183352 | None:intergenic | 50.0% |
| !! | GTTTTAGGCTTCGTAAGCGG+CGG | + | chr1_1:6183334-6183353 | None:intergenic | 50.0% |
| !!! | GTTGGGGTTTTGGGAGCTTA+GGG | + | chr1_1:6183363-6183382 | None:intergenic | 50.0% |
| ! | AGGGTTAGGGTTGGGGTTTT+GGG | + | chr1_1:6183372-6183391 | None:intergenic | 50.0% |
| ! | TAGGGTTAGGGTTGGGGTTT+TGG | + | chr1_1:6183373-6183392 | None:intergenic | 50.0% |
| ! | TGTTTGAGGTGAGGAAACGG+TGG | + | chr1_1:6183448-6183467 | None:intergenic | 50.0% |
| GTTTCCTTGGGGAGATCTTC+GGG | + | chr1_1:6183509-6183528 | None:intergenic | 50.0% | |
| CGTTTCCTTGGGGAGATCTT+CGG | + | chr1_1:6183510-6183529 | None:intergenic | 50.0% | |
| CCCAAGTGGAAGCAACGATA+AGG | + | chr1_1:6183538-6183557 | None:intergenic | 50.0% | |
| GTTGCTTCCACTTGGGAAGA+CGG | - | chr1_1:6183542-6183561 | Msa0003610:three_prime_UTR | 50.0% | |
| ! | TGGTTTTCCGTCTTCCCAAG+TGG | + | chr1_1:6183552-6183571 | None:intergenic | 50.0% |
| !! | ATTCTTCGCCGATTGGCTTG+CGG | - | chr1_1:6183586-6183605 | Msa0003610:three_prime_UTR | 50.0% |
| ! | TGTGAAACGGATGAAGGCGT+TGG | - | chr1_1:6183724-6183743 | Msa0003610:CDS | 50.0% |
| !! | GTGAAACGGATGAAGGCGTT+GGG | - | chr1_1:6183725-6183744 | Msa0003610:CDS | 50.0% |
| TCAACATCTCCTTCCCCCAA+CGG | + | chr1_1:6183767-6183786 | None:intergenic | 50.0% | |
| TTGGGGGAAGGAGATGTTGA+TGG | - | chr1_1:6183767-6183786 | Msa0003610:CDS | 50.0% | |
| !! | AGGAGATGTTGATGGTGGTG+AGG | - | chr1_1:6183775-6183794 | Msa0003610:CDS | 50.0% |
| !! | AGATGTTGATGGTGGTGAGG+TGG | - | chr1_1:6183778-6183797 | Msa0003610:CDS | 50.0% |
| AAGTGGTGTGGGAAGGTTGT+TGG | - | chr1_1:6183815-6183834 | Msa0003610:intron | 50.0% | |
| GAGAATGCTGAGGAGGAAAG+CGG | - | chr1_1:6183872-6183891 | Msa0003610:intron | 50.0% | |
| AGAGTCTGATGAGGAGGAAG+AGG | - | chr1_1:6183916-6183935 | Msa0003610:CDS | 50.0% | |
| !! | CTTCCTCGAAGGTGCTTTAC+CGG | + | chr1_1:6183975-6183994 | None:intergenic | 50.0% |
| ! | TAAAGCACCTTCGAGGAAGC+TGG | - | chr1_1:6183976-6183995 | Msa0003610:CDS | 50.0% |
| GCTACGGTGAAGGAGAGTAA+TGG | - | chr1_1:6184001-6184020 | Msa0003610:CDS | 50.0% | |
| GCGAAAGCTACACTCTGGTT+TGG | - | chr1_1:6184311-6184330 | Msa0003610:CDS | 50.0% | |
| GCAATCCTCACCTTACAAGC+CGG | - | chr1_1:6184493-6184512 | Msa0003610:intron | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr1_1:6184501-6184520 | None:intergenic | 50.0% |
| TGGACTAAGTCACAGCTTCG+AGG | - | chr1_1:6184664-6184683 | Msa0003610:CDS | 50.0% | |
| ! | CACACCCAACTTTTCGCTAC+TGG | + | chr1_1:6185345-6185364 | None:intergenic | 50.0% |
| CAGTAGCGAAAAGTTGGGTG+TGG | - | chr1_1:6185343-6185362 | Msa0003610:intron | 50.0% | |
| GAAAAGTTGGGTGTGGGAGA+TGG | - | chr1_1:6185350-6185369 | Msa0003610:intron | 50.0% | |
| GACGCTGACACATTGTTGTC+AGG | - | chr1_1:6185489-6185508 | Msa0003610:intron | 50.0% | |
| ! | CTACAGCTAGAGCTAGTCTC+CGG | + | chr1_1:6185605-6185624 | None:intergenic | 50.0% |
| !! | ACTAGCGGTATCGATAACGG+CGG | + | chr1_1:6186223-6186242 | None:intergenic | 50.0% |
| GCATGATCTGAAAATCGCCG+CGG | - | chr1_1:6186302-6186321 | Msa0003610:intron | 50.0% | |
| GAAAATCGCCGCGGATAGAA+TGG | - | chr1_1:6186311-6186330 | Msa0003610:intron | 50.0% | |
| CGTGTCTTCCATTCTATCCG+CGG | + | chr1_1:6186322-6186341 | None:intergenic | 50.0% | |
| GGAAGATTTCATGGCATGGC+TGG | + | chr1_1:6186441-6186460 | None:intergenic | 50.0% | |
| CTGAGAGGCCTAGAGTTGTT+CGG | + | chr1_1:6186750-6186769 | None:intergenic | 50.0% | |
| AACAACTCTAGGCCTCTCAG+TGG | - | chr1_1:6186750-6186769 | Msa0003610:intron | 50.0% | |
| ACAACTCTAGGCCTCTCAGT+GGG | - | chr1_1:6186751-6186770 | Msa0003610:intron | 50.0% | |
| CAAGACAAAAGCCCACTGAG+AGG | + | chr1_1:6186765-6186784 | None:intergenic | 50.0% | |
| !! | CTCTCAGTGGGCTTTTGTCT+TGG | - | chr1_1:6186763-6186782 | Msa0003610:intron | 50.0% |
| ! | TGGGCTTTTGTCTTGGTTGC+CGG | - | chr1_1:6186770-6186789 | Msa0003610:intron | 50.0% |
| AAAGCTCCGATTACCGTCTC+TGG | + | chr1_1:6186955-6186974 | Msa0003620:CDS | 50.0% | |
| !! | GACGATCTCTGCTGATTCGT+TGG | - | chr1_1:6187115-6187134 | Msa0003610:intron | 50.0% |
| TGGCAGCGTTATTGCATCTG+AGG | - | chr1_1:6187171-6187190 | Msa0003610:intron | 50.0% | |
| CAGCGTTATTGCATCTGAGG+TGG | - | chr1_1:6187174-6187193 | Msa0003610:intron | 50.0% | |
| ! | GGACGGAGGGAGTATATTGT+TGG | - | chr1_1:6187561-6187580 | Msa0003610:intron | 50.0% |
| CAGATGTTAGCCCATCTGAG+AGG | - | chr1_1:6187966-6187985 | Msa0003610:intron | 50.0% | |
| ATGTTAGCCCATCTGAGAGG+AGG | - | chr1_1:6187969-6187988 | Msa0003610:intron | 50.0% | |
| CACATGTTTGCAATCAGGCC+AGG | - | chr1_1:6188057-6188076 | Msa0003610:intron | 50.0% | |
| TGTTTGCAATCAGGCCAGGT+AGG | - | chr1_1:6188061-6188080 | Msa0003610:intron | 50.0% | |
| GATGGATCATTTCGCCTACC+TGG | + | chr1_1:6188078-6188097 | None:intergenic | 50.0% | |
| TTTGTGGATAGTGACAGGCC+CGG | + | chr1_1:6188139-6188158 | None:intergenic | 50.0% | |
| TGCTGGAGTATGGCCGAATT+TGG | - | chr1_1:6188364-6188383 | Msa0003610:intron | 50.0% | |
| TGGAGTATGGCCGAATTTGG+TGG | - | chr1_1:6188367-6188386 | Msa0003610:intron | 50.0% | |
| GGAGTATGGCCGAATTTGGT+GGG | - | chr1_1:6188368-6188387 | Msa0003610:intron | 50.0% | |
| ! | GAGTATGGCCGAATTTGGTG+GGG | - | chr1_1:6188369-6188388 | Msa0003610:intron | 50.0% |
| ! | AGTATGGCCGAATTTGGTGG+GGG | - | chr1_1:6188370-6188389 | Msa0003610:intron | 50.0% |
| ACCTCGGAGCGATTAACTGA+AGG | - | chr1_1:6189064-6189083 | Msa0003610:intron | 50.0% | |
| GTTGCTGAAGCCTATTACCC+AGG | - | chr1_1:6189228-6189247 | Msa0003610:intron | 50.0% | |
| CAGTGTAGATGCCGGAACAA+AGG | - | chr1_1:6189339-6189358 | Msa0003610:CDS | 50.0% | |
| TCAGAGCAGTCAAGGAATCC+TGG | + | chr1_1:6189683-6189702 | None:intergenic | 50.0% | |
| GGATTCCTTGACTGCTCTGA+AGG | - | chr1_1:6189683-6189702 | Msa0003610:intron | 50.0% | |
| ATCCTTTCACAAGGGTCAGG+CGG | + | chr1_1:6189731-6189750 | None:intergenic | 50.0% | |
| TCCATCCTTTCACAAGGGTC+AGG | + | chr1_1:6189734-6189753 | None:intergenic | 50.0% | |
| TGCCGACGTGAAAGCTTTCT+CGG | - | chr1_1:6189979-6189998 | Msa0003610:CDS | 50.0% | |
| CTCCGAGAAAGCTTTCACGT+CGG | + | chr1_1:6189984-6190003 | None:intergenic | 50.0% | |
| ! | GCTCTGTCTCTGAAAAGCCA+AGG | - | chr1_1:6190004-6190023 | Msa0003610:CDS | 50.0% |
| AGGCAACTTCATACTCCCCT+TGG | + | chr1_1:6190024-6190043 | None:intergenic | 50.0% | |
| ACACGAGTGAACATGCTCAC+AGG | + | chr1_1:6190044-6190063 | None:intergenic | 50.0% | |
| TCACTCGTGTTGTGTCCTCT+TGG | - | chr1_1:6190054-6190073 | Msa0003610:CDS | 50.0% | |
| ACCTTCCTCAGCTCCATAGA+CGG | + | chr1_1:6190291-6190310 | None:intergenic | 50.0% | |
| ! | GAGGAAGGTGGATTTGATCC+AGG | - | chr1_1:6190302-6190321 | Msa0003610:CDS | 50.0% |
| AAGTCGAGCCGCAAAGAATC+AGG | - | chr1_1:6190356-6190375 | Msa0003610:CDS | 50.0% | |
| CGAGCTGGGACTGATGAGAA+TGG | + | chr1_1:6183257-6183276 | None:intergenic | 55.0% | |
| !!! | GGTTGGGGTTTTGGGAGCTT+AGG | + | chr1_1:6183364-6183383 | None:intergenic | 55.0% |
| ! | GAGGCGGTTAGAGAGGGTTT+TGG | + | chr1_1:6183426-6183445 | None:intergenic | 55.0% |
| TTGAGGTGAGGAAACGGTGG+AGG | + | chr1_1:6183445-6183464 | None:intergenic | 55.0% | |
| CGAACTCTCCGCAAGCCAAT+CGG | + | chr1_1:6183597-6183616 | None:intergenic | 55.0% | |
| !! | CGATTGGCTTGCGGAGAGTT+CGG | - | chr1_1:6183595-6183614 | Msa0003610:three_prime_UTR | 55.0% |
| !! | GTATTCGGTGTCGGTAGTGG+AGG | - | chr1_1:6183665-6183684 | Msa0003610:exon | 55.0% |
| !! | GGTGTCGGTAGTGGAGGTTA+TGG | - | chr1_1:6183671-6183690 | Msa0003610:CDS | 55.0% |
| !! | AAACGGATGAAGGCGTTGGG+TGG | - | chr1_1:6183728-6183747 | Msa0003610:CDS | 55.0% |
| GAGATGATTCCGTTGGGGGA+AGG | - | chr1_1:6183755-6183774 | Msa0003610:CDS | 55.0% | |
| ! | GGGGAAGGAGATGTTGATGG+TGG | - | chr1_1:6183770-6183789 | Msa0003610:CDS | 55.0% |
| !! | TGATGGTGGTGAGGTGGATG+AGG | - | chr1_1:6183784-6183803 | Msa0003610:CDS | 55.0% |
| GTCTGATGAGGAGGAAGAGG+CGG | - | chr1_1:6183919-6183938 | Msa0003610:CDS | 55.0% | |
| ! | TTGCCGGTAAAGCACCTTCG+AGG | - | chr1_1:6183969-6183988 | Msa0003610:CDS | 55.0% |
| TTCGAGGAAGCTGGTGGCTA+CGG | - | chr1_1:6183985-6184004 | Msa0003610:CDS | 55.0% | |
| AAGTCACAGCTTCGAGGTCG+AGG | - | chr1_1:6184670-6184689 | Msa0003610:CDS | 55.0% | |
| !! | CGGTGTTGGTGCATCTAAGG+CGG | + | chr1_1:6186203-6186222 | None:intergenic | 55.0% |
| !! | GGTATCGATAACGGCGGTGT+TGG | + | chr1_1:6186217-6186236 | None:intergenic | 55.0% |
| !! | CACGGTCTCCGTTGATTCGT+TGG | + | chr1_1:6186262-6186281 | None:intergenic | 55.0% |
| CAACGAATCAACGGAGACCG+TGG | - | chr1_1:6186260-6186279 | Msa0003610:intron | 55.0% | |
| CAGCTTCTCTCTCACAGCCA+CGG | + | chr1_1:6186280-6186299 | None:intergenic | 55.0% | |
| CCTTGGATTGCGGTTAAGGG+AGG | + | chr1_1:6186597-6186616 | None:intergenic | 55.0% | |
| CCTCCCTTAACCGCAATCCA+AGG | - | chr1_1:6186594-6186613 | Msa0003610:intron | 55.0% | |
| !! | TCTGGTCTGGTCTTGTCCAG+TGG | - | chr1_1:6188113-6188132 | Msa0003610:intron | 55.0% |
| CAGAGCTGTTGTTCGCGTGT+CGG | - | chr1_1:6188463-6188482 | Msa0003610:intron | 55.0% | |
| GCCTTCAGTTAATCGCTCCG+AGG | + | chr1_1:6189068-6189087 | None:intergenic | 55.0% | |
| TACCGCCTGACCCTTGTGAA+AGG | - | chr1_1:6189726-6189745 | Msa0003610:intron | 55.0% | |
| GCCTGACCCTTGTGAAAGGA+TGG | - | chr1_1:6189730-6189749 | Msa0003610:intron | 55.0% | |
| CTTTCACGTCGGCATGCCAA+GGG | + | chr1_1:6189973-6189992 | None:intergenic | 55.0% | |
| CGACGTGAAAGCTTTCTCGG+AGG | - | chr1_1:6189982-6190001 | Msa0003610:CDS | 55.0% | |
| GTCTATGGAGCTGAGGAAGG+TGG | - | chr1_1:6190290-6190309 | Msa0003610:CDS | 55.0% | |
| ! | CGAGGAGTGTGAGACGAGCT+GGG | + | chr1_1:6183271-6183290 | None:intergenic | 60.0% |
| ! | TTGTGGCGGAGAAGAGAGCG+AGG | + | chr1_1:6183289-6183308 | None:intergenic | 60.0% |
| ACGGTGGAGGCGGTTAGAGA+GGG | + | chr1_1:6183432-6183451 | None:intergenic | 60.0% | |
| AACGGTGGAGGCGGTTAGAG+AGG | + | chr1_1:6183433-6183452 | None:intergenic | 60.0% | |
| AGGTGAGGAAACGGTGGAGG+CGG | + | chr1_1:6183442-6183461 | None:intergenic | 60.0% | |
| CGAACCCGAAGATCTCCCCA+AGG | - | chr1_1:6183502-6183521 | Msa0003610:three_prime_UTR | 60.0% | |
| GGAAGACGGAAAACCACCGC+CGG | - | chr1_1:6183556-6183575 | Msa0003610:three_prime_UTR | 60.0% | |
| !! | TTGGCTTGCGGAGAGTTCGG+AGG | - | chr1_1:6183598-6183617 | Msa0003610:three_prime_UTR | 60.0% |
| !! | GCGGTATTCGGTGTCGGTAG+TGG | - | chr1_1:6183662-6183681 | Msa0003610:exon | 60.0% |
| TGAGGAGGAAGAGGCGGAGT+CGG | - | chr1_1:6183925-6183944 | Msa0003610:CDS | 60.0% | |
| AGCACCTTCGAGGAAGCTGG+TGG | - | chr1_1:6183979-6183998 | Msa0003610:CDS | 60.0% | |
| GTAGCCACCAGCTTCCTCGA+AGG | + | chr1_1:6183986-6184005 | None:intergenic | 60.0% | |
| GAAGCTGGTGGCTACGGTGA+AGG | - | chr1_1:6183991-6184010 | Msa0003610:CDS | 60.0% | |
| TCACAGCTTCGAGGTCGAGG+TGG | - | chr1_1:6184673-6184692 | Msa0003610:CDS | 60.0% | |
| CATGGAGGCAACCCCTAGCT+TGG | - | chr1_1:6185275-6185294 | Msa0003610:intron | 60.0% | |
| !! | CGGCGGTGTTGGTGCATCTA+AGG | + | chr1_1:6186206-6186225 | None:intergenic | 60.0% |
| TGGGCCGTCAACCAAGGCAA+AGG | + | chr1_1:6186421-6186440 | None:intergenic | 60.0% | |
| !! | GTCTGGTCTTGTCCAGTGGC+CGG | - | chr1_1:6188117-6188136 | Msa0003610:intron | 60.0% |
| !! | TCTGGTCTTGTCCAGTGGCC+GGG | - | chr1_1:6188118-6188137 | Msa0003610:intron | 60.0% |
| CCATACTCCAGCACGCGAAG+GGG | + | chr1_1:6188357-6188376 | None:intergenic | 60.0% | |
| GCCATACTCCAGCACGCGAA+GGG | + | chr1_1:6188358-6188377 | None:intergenic | 60.0% | |
| ! | ATGGCCGAATTTGGTGGGGG+CGG | - | chr1_1:6188373-6188392 | Msa0003610:intron | 60.0% |
| CTTGCCGCCCCCACCAAATT+CGG | + | chr1_1:6188380-6188399 | None:intergenic | 60.0% | |
| ! | GAATTTGGTGGGGGCGGCAA+GGG | - | chr1_1:6188379-6188398 | Msa0003610:intron | 60.0% |
| GCAGTCGCCCCTTCTTCAGA+TGG | + | chr1_1:6189585-6189604 | None:intergenic | 60.0% | |
| TCAGGCGGTATACAGTGCGC+TGG | + | chr1_1:6189716-6189735 | None:intergenic | 60.0% | |
| GCTTTCACGTCGGCATGCCA+AGG | + | chr1_1:6189974-6189993 | None:intergenic | 60.0% | |
| ACATGGCTGCCACACCATCC+TGG | - | chr1_1:6190264-6190283 | Msa0003610:CDS | 60.0% | |
| CATGGCTGCCACACCATCCT+GGG | - | chr1_1:6190265-6190284 | Msa0003610:CDS | 60.0% | |
| ATAGACGGCCCAGGATGGTG+TGG | + | chr1_1:6190276-6190295 | None:intergenic | 60.0% | |
| ACACCATCCTGGGCCGTCTA+TGG | - | chr1_1:6190275-6190294 | Msa0003610:CDS | 60.0% | |
| GCCGTCTATGGAGCTGAGGA+AGG | - | chr1_1:6190287-6190306 | Msa0003610:CDS | 60.0% | |
| ! | GCGAGGAGTGTGAGACGAGC+TGG | + | chr1_1:6183272-6183291 | None:intergenic | 65.0% |
| CATGGCTGGGCCGTCAACCA+AGG | + | chr1_1:6186427-6186446 | None:intergenic | 65.0% | |
| ATAGTGACAGGCCCGGCCAC+TGG | + | chr1_1:6188132-6188151 | None:intergenic | 65.0% | |
| TACTCCAGCACGCGAAGGGG+AGG | + | chr1_1:6188354-6188373 | None:intergenic | 65.0% | |
| CCCCTTCGCGTGCTGGAGTA+TGG | - | chr1_1:6188354-6188373 | Msa0003610:intron | 65.0% | |
| GGCCATACTCCAGCACGCGA+AGG | + | chr1_1:6188359-6188378 | None:intergenic | 65.0% | |
| ! | CGAATTTGGTGGGGGCGGCA+AGG | - | chr1_1:6188378-6188397 | Msa0003610:intron | 65.0% |
| TGAAGAAGGGGCGACTGCGC+TGG | - | chr1_1:6189587-6189606 | Msa0003610:intron | 65.0% | |
| GCTCCATAGACGGCCCAGGA+TGG | + | chr1_1:6190281-6190300 | None:intergenic | 65.0% | |
| CTCAGCTCCATAGACGGCCC+AGG | + | chr1_1:6190285-6190304 | None:intergenic | 65.0% | |
| CTGGGCCGTCTATGGAGCTG+AGG | - | chr1_1:6190283-6190302 | Msa0003610:CDS | 65.0% | |
| CTTGCCTCCCCTTCGCGTGC+TGG | - | chr1_1:6188347-6188366 | Msa0003610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6183251 | 6190799 | 6183251 | ID=Msa0003610;Name=Msa0003610 |
| chr1_1 | mRNA | 6183251 | 6190799 | 6183251 | ID=Msa0003610-mRNA-1;Parent=Msa0003610;Name=Msa0003610-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.8|0.72|1|0.6|0.45|11|397|585 |
| chr1_1 | exon | 6183251 | 6183450 | 6183251 | ID=Msa0003610-mRNA-1:exon:2030;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6183471 | 6183820 | 6183471 | ID=Msa0003610-mRNA-1:exon:2029;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6183903 | 6184113 | 6183903 | ID=Msa0003610-mRNA-1:exon:2028;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6184209 | 6184366 | 6184209 | ID=Msa0003610-mRNA-1:exon:2027;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6184633 | 6184719 | 6184633 | ID=Msa0003610-mRNA-1:exon:2026;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6184801 | 6184991 | 6184801 | ID=Msa0003610-mRNA-1:exon:2025;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6188603 | 6188778 | 6188603 | ID=Msa0003610-mRNA-1:exon:2024;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6189316 | 6189431 | 6189316 | ID=Msa0003610-mRNA-1:exon:2023;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6189966 | 6190201 | 6189966 | ID=Msa0003610-mRNA-1:exon:2022;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6190259 | 6190489 | 6190259 | ID=Msa0003610-mRNA-1:exon:2021;Parent=Msa0003610-mRNA-1 |
| chr1_1 | exon | 6190601 | 6190799 | 6190601 | ID=Msa0003610-mRNA-1:exon:2020;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6190601 | 6190799 | 6190601 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6190259 | 6190489 | 6190259 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6189966 | 6190201 | 6189966 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6189316 | 6189431 | 6189316 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6188603 | 6188778 | 6188603 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6184801 | 6184991 | 6184801 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6184633 | 6184719 | 6184633 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6184209 | 6184366 | 6184209 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6183903 | 6184113 | 6183903 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | CDS | 6183668 | 6183820 | 6183668 | ID=Msa0003610-mRNA-1:cds;Parent=Msa0003610-mRNA-1 |
| chr1_1 | three_prime_UTR | 6183471 | 6183667 | 6183471 | ID=Msa0003610-mRNA-1:three_prime_utr;Parent=Msa0003610-mRNA-1 |
| chr1_1 | three_prime_UTR | 6183251 | 6183450 | 6183251 | ID=Msa0003610-mRNA-1:three_prime_utr;Parent=Msa0003610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
