Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146500 | sp|Q93YN9|IPPK_ARATH | 53.409 | 440 | 202 | 2 | 32 | 470 | 1 | 438 | 5.02e-161 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146500 | A0A072VDS9 | 96.862 | 478 | 15 | 0 | 1 | 478 | 1 | 478 | 0.0 | 963 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003440 | Msa0146500 | 0.880184 | 6.764095e-70 | -8.615850e-47 |
| Msa0146500 | Msa1227200 | 0.880991 | 3.476133e-70 | -8.615850e-47 |
| Msa0146500 | Msa1385640 | 0.859336 | 4.437401e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146500 | MtrunA17_Chr1g0155511 | 96.862 | 478 | 15 | 0 | 1 | 478 | 1 | 478 | 0.0 | 963 |
| Msa0146500 | MtrunA17_Chr3g0141811 | 69.683 | 442 | 134 | 0 | 32 | 473 | 1 | 442 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146500 | AT1G22100.1 | 54.358 | 436 | 192 | 3 | 33 | 467 | 3 | 432 | 8.05e-163 | 468 |
| Msa0146500 | AT5G42810.1 | 53.409 | 440 | 202 | 2 | 32 | 470 | 1 | 438 | 5.11e-162 | 466 |
| Msa0146500 | AT1G59312.2 | 49.103 | 446 | 217 | 6 | 33 | 471 | 3 | 445 | 5.63e-143 | 417 |
| Msa0146500 | AT1G58643.2 | 49.103 | 446 | 217 | 6 | 33 | 471 | 3 | 445 | 5.63e-143 | 417 |
| Msa0146500 | AT1G59312.1 | 49.552 | 446 | 215 | 7 | 33 | 471 | 38 | 480 | 1.52e-142 | 418 |
| Msa0146500 | AT1G58936.1 | 49.552 | 446 | 215 | 7 | 33 | 471 | 38 | 480 | 1.52e-142 | 418 |
| Msa0146500 | AT1G58643.1 | 49.552 | 446 | 215 | 7 | 33 | 471 | 38 | 480 | 1.52e-142 | 418 |
Find 114 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTCTAGACTCACATTT+TGG | 0.211675 | 1_4:+6199268 | Msa0146500:intron |
| GGCTTTATGAATTCTTTCTT+TGG | 0.242124 | 1_4:-6200336 | None:intergenic |
| TACCCCAGCATCAACATATT+TGG | 0.257064 | 1_4:-6198973 | None:intergenic |
| AAATGGAGATGCAAACTTAT+AGG | 0.304541 | 1_4:+6201281 | Msa0146500:CDS |
| CTCCACATGAACGGCTCATC+TGG | 0.312520 | 1_4:+6198862 | Msa0146500:CDS |
| CAGCTTATCAGTTGAGATAA+AGG | 0.331799 | 1_4:+6199830 | Msa0146500:CDS |
| TGCAACGCTGATTCCTTCCT+TGG | 0.337708 | 1_4:-6198813 | None:intergenic |
| AATGGAGATGCAAACTTATA+GGG | 0.348706 | 1_4:+6201282 | Msa0146500:CDS |
| GTTGCTAGTCAACGCCCTGC+TGG | 0.357402 | 1_4:+6199326 | Msa0146500:CDS |
| CCAAGGAAAGAGGAGGGTTC+TGG | 0.359741 | 1_4:+6200809 | Msa0146500:CDS |
| AATATTGTTCTCTCTTACAC+TGG | 0.362819 | 1_4:+6198016 | Msa0146500:CDS |
| CTGGGCGAGTTGATGTTTCA+AGG | 0.365906 | 1_4:+6199345 | Msa0146500:CDS |
| TATTTATGTGTTGAATTAAG+AGG | 0.390857 | 1_4:-6197743 | None:intergenic |
| GTAGGAAGAAATCCGCATTT+AGG | 0.391832 | 1_4:-6200015 | None:intergenic |
| CTCTTTGCATTCTGCATCAC+TGG | 0.393035 | 1_4:+6200709 | Msa0146500:CDS |
| AAGTCTCAGTATGCAACTTC+AGG | 0.393468 | 1_4:-6201306 | None:intergenic |
| CCAGAACCCTCCTCTTTCCT+TGG | 0.396286 | 1_4:-6200809 | None:intergenic |
| TTACAAAGAGATGAGCAAAA+TGG | 0.397598 | 1_4:+6201248 | Msa0146500:CDS |
| GAGCATGGCGCGTAAAGAAT+TGG | 0.400860 | 1_4:+6200661 | Msa0146500:CDS |
| AGTAGTAAAGAGATCTTTGA+TGG | 0.402587 | 1_4:-6200357 | None:intergenic |
| GGTTCCAAATATGTTGATGC+TGG | 0.410935 | 1_4:+6198969 | Msa0146500:CDS |
| TTTATGAGTTATCATATATG+AGG | 0.412078 | 1_4:-6201551 | None:intergenic |
| TGAAGAAGATGCAGCTCATT+GGG | 0.412372 | 1_4:+6197970 | Msa0146500:CDS |
| AAAATGGATCATGGAAGAAA+TGG | 0.413794 | 1_4:+6201264 | Msa0146500:CDS |
| CTGAAGAAGATGCAGCTCAT+TGG | 0.417078 | 1_4:+6197969 | Msa0146500:CDS |
| CTTTATCTCAACTGATAAGC+TGG | 0.418788 | 1_4:-6199829 | None:intergenic |
| TCTCTCATACTCGGAGGGCT+TGG | 0.418888 | 1_4:+6200413 | Msa0146500:CDS |
| TGAAAGTACAGATGCATCTA+TGG | 0.423587 | 1_4:+6200445 | Msa0146500:CDS |
| AACCCACTCGATCTGTTCTC+TGG | 0.426001 | 1_4:+6200311 | Msa0146500:CDS |
| ATATATGAGGAAACAAATAA+TGG | 0.426540 | 1_4:-6201538 | None:intergenic |
| CTCATACTCGGAGGGCTTGG+AGG | 0.427893 | 1_4:+6200416 | Msa0146500:CDS |
| CTACCCTCCTCACATGCTAT+TGG | 0.428346 | 1_4:+6201409 | Msa0146500:three_prime_UTR |
| CGTTGTGTTCCTCTGTGATC+AGG | 0.433813 | 1_4:-6197801 | None:intergenic |
| TCTTCAGATAAGGAAATTGC+TGG | 0.438795 | 1_4:+6198909 | Msa0146500:CDS |
| CAAAATAATTATGCAAAAGA+TGG | 0.440358 | 1_4:-6201472 | None:intergenic |
| TATACAGAAAATTGATAGTT+GGG | 0.446477 | 1_4:-6201433 | None:intergenic |
| CATGTCATGAAGCCTTTGCT+TGG | 0.452650 | 1_4:+6198948 | Msa0146500:CDS |
| CAGGTGTTGTTTGATTAAGA+TGG | 0.453937 | 1_4:-6197782 | None:intergenic |
| CTTGACAATATTGACATAGA+AGG | 0.455818 | 1_4:+6200602 | Msa0146500:CDS |
| ACTTATTTCCTCTTCAGATA+AGG | 0.460694 | 1_4:+6198899 | Msa0146500:CDS |
| TTTAAAACGGTTGAATAAAG+TGG | 0.467422 | 1_4:+6201188 | Msa0146500:CDS |
| GAAACATCAACTCGCCCAGC+AGG | 0.473865 | 1_4:-6199341 | None:intergenic |
| GTATACAGAAAATTGATAGT+TGG | 0.485821 | 1_4:-6201434 | None:intergenic |
| TCAGATATGAATCTTGAAGT+AGG | 0.485966 | 1_4:-6200033 | None:intergenic |
| TCTGCTTACCTTAAAATCAA+AGG | 0.487614 | 1_4:-6200873 | None:intergenic |
| GCAGCTCATTGGGTTTATAG+AGG | 0.490643 | 1_4:+6197980 | Msa0146500:CDS |
| CTTTCTAAAACATTTACTGT+TGG | 0.491392 | 1_4:+6201593 | Msa0146500:three_prime_UTR |
| CCATCATCAGCTTGAATGAC+CGG | 0.498277 | 1_4:-6200494 | None:intergenic |
| TTATTGACCTCGATTTAAAA+CGG | 0.501967 | 1_4:+6201175 | Msa0146500:CDS |
| GTGAAGCAAAATATTTATGC+AGG | 0.504797 | 1_4:-6201387 | None:intergenic |
| TCTGAAGAGGAAATAAGTTC+AGG | 0.504962 | 1_4:-6198894 | None:intergenic |
| AGCAATTTCCTTATCTGAAG+AGG | 0.506496 | 1_4:-6198907 | None:intergenic |
| AACCGTCTCAAGGAATTCCT+TGG | 0.514592 | 1_4:-6199294 | None:intergenic |
| GAGATGAGCAAAATGGATCA+TGG | 0.515742 | 1_4:+6201255 | Msa0146500:CDS |
| ATTTATGTGTTGAATTAAGA+GGG | 0.518245 | 1_4:-6197742 | None:intergenic |
| GGAAAGCTTGAGAATTGTAA+AGG | 0.520521 | 1_4:+6200733 | Msa0146500:CDS |
| TTGCTAGTCAACGCCCTGCT+GGG | 0.522802 | 1_4:+6199327 | Msa0146500:CDS |
| GTCTCAAAACCATACCTTGA+GGG | 0.523276 | 1_4:-6199418 | None:intergenic |
| TTAAATGGTTCTCTCATACT+CGG | 0.530482 | 1_4:+6200404 | Msa0146500:CDS |
| TTTATCTCAACTGATAAGCT+GGG | 0.534076 | 1_4:-6199828 | None:intergenic |
| GTTCCAAATATGTTGATGCT+GGG | 0.535103 | 1_4:+6198970 | Msa0146500:CDS |
| GAACCTCAAGGAGCTTATCA+AGG | 0.536139 | 1_4:-6200574 | None:intergenic |
| CCGGTCATTCAAGCTGATGA+TGG | 0.539433 | 1_4:+6200494 | Msa0146500:CDS |
| TAAATAAGTTCTCTGTGCAT+TGG | 0.540290 | 1_4:-6200517 | None:intergenic |
| ATACTCGGAGGGCTTGGAGG+TGG | 0.540855 | 1_4:+6200419 | Msa0146500:CDS |
| CATTCTTCTCAACCGTCTCA+AGG | 0.543125 | 1_4:-6199304 | None:intergenic |
| TATTCTGCATGATGCATTGG+AGG | 0.545251 | 1_4:+6201616 | Msa0146500:three_prime_UTR |
| CATTGGGTTTATAGAGGTGA+AGG | 0.550198 | 1_4:+6197986 | Msa0146500:CDS |
| TGGTATTCTGCATGATGCAT+TGG | 0.555583 | 1_4:+6201613 | Msa0146500:three_prime_UTR |
| TGTTTCATTTCAGGTAGTCA+AGG | 0.559197 | 1_4:+6199798 | Msa0146500:intron |
| CTATCTTCTTATCTAACTTG+TGG | 0.562101 | 1_4:-6201218 | None:intergenic |
| ATGAGGAAACAAATAATGGA+AGG | 0.577913 | 1_4:-6201534 | None:intergenic |
| ACTTGAAGATGAACTTCAGC+CGG | 0.579402 | 1_4:+6200475 | Msa0146500:CDS |
| ATGGTTCTCTCATACTCGGA+GGG | 0.583585 | 1_4:+6200408 | Msa0146500:CDS |
| ACATATTTGGAACCAAGCAA+AGG | 0.590042 | 1_4:-6198960 | None:intergenic |
| TGGGCGAGTTGATGTTTCAA+GGG | 0.590970 | 1_4:+6199346 | Msa0146500:CDS |
| TTCATGTGGAGTCAGAGCTA+TGG | 0.596545 | 1_4:-6198850 | None:intergenic |
| CATTCGCAAGTCTCCAAGGA+AGG | 0.599728 | 1_4:+6198800 | Msa0146500:CDS |
| ATCAAAATGTAGCCTAAATG+CGG | 0.601221 | 1_4:+6200003 | Msa0146500:intron |
| TTTGCATTCTGCATCACTGG+AGG | 0.601325 | 1_4:+6200712 | Msa0146500:CDS |
| TCTGAAATTGCAACATGGAG+AGG | 0.602662 | 1_4:+6200104 | Msa0146500:CDS |
| TTCCAGATGAGCCGTTCATG+TGG | 0.604622 | 1_4:-6198864 | None:intergenic |
| TGCGCATTCGCAAGTCTCCA+AGG | 0.605257 | 1_4:+6198796 | Msa0146500:CDS |
| GACCAAGGAATTCCTTGAGA+CGG | 0.607660 | 1_4:+6199292 | Msa0146500:CDS |
| GATCATTCAATCTTCCCTCA+AGG | 0.608947 | 1_4:+6199404 | Msa0146500:CDS |
| CTGAAGAAACTGCTATCAAG+AGG | 0.610082 | 1_4:+6200052 | Msa0146500:CDS |
| AGGAAGGAATCAGCGTTGCA+AGG | 0.612808 | 1_4:+6198816 | Msa0146500:CDS |
| CTCAAGATATACAGTATCGT+AGG | 0.616260 | 1_4:-6200837 | None:intergenic |
| CATTACTTCTCAACAGAGCA+TGG | 0.616815 | 1_4:+6200646 | Msa0146500:CDS |
| TAGCTCTGACTCCACATGAA+CGG | 0.620751 | 1_4:+6198853 | Msa0146500:CDS |
| TTTAGACCAAGGAAAGAGGA+GGG | 0.622681 | 1_4:+6200803 | Msa0146500:CDS |
| CTTCAGATAAGGAAATTGCT+GGG | 0.625703 | 1_4:+6198910 | Msa0146500:CDS |
| AAGAAACTGCTATCAAGAGG+AGG | 0.628067 | 1_4:+6200055 | Msa0146500:CDS |
| GTTGGGACCAATAGCATGTG+AGG | 0.633773 | 1_4:-6201416 | None:intergenic |
| TGTCAAGCTTCTGAACCTCA+AGG | 0.634666 | 1_4:-6200586 | None:intergenic |
| AGAACTTACATAAGAAGGAG+AGG | 0.634781 | 1_4:-6198041 | None:intergenic |
| GGACCAATAGCATGTGAGGA+GGG | 0.635570 | 1_4:-6201412 | None:intergenic |
| GATCCAGAGAACAGATCGAG+TGG | 0.637943 | 1_4:-6200314 | None:intergenic |
| AATCAGCGTTGCAAGGAGTG+AGG | 0.642103 | 1_4:+6198823 | Msa0146500:CDS |
| CAGTGATGCAGAATGCAAAG+AGG | 0.642291 | 1_4:-6200708 | None:intergenic |
| AGTCCTTGATAAGCTCCTTG+AGG | 0.646197 | 1_4:+6200571 | Msa0146500:CDS |
| CAAGCTCTGAAATTGCAACA+TGG | 0.647998 | 1_4:+6200099 | Msa0146500:CDS |
| GGGACCAATAGCATGTGAGG+AGG | 0.649926 | 1_4:-6201413 | None:intergenic |
| TTCCAAATATGTTGATGCTG+GGG | 0.654226 | 1_4:+6198971 | Msa0146500:CDS |
| AAACATCAACTCGCCCAGCA+GGG | 0.655838 | 1_4:-6199340 | None:intergenic |
| TCACAGAGGAACACAACGCA+AGG | 0.662619 | 1_4:+6197806 | Msa0146500:CDS |
| TTATCTCAACTGATAAGCTG+GGG | 0.664084 | 1_4:-6199827 | None:intergenic |
| AATGGTTCTCTCATACTCGG+AGG | 0.667393 | 1_4:+6200407 | Msa0146500:CDS |
| ATTCTGCATGATGCATTGGA+GGG | 0.667493 | 1_4:+6201617 | Msa0146500:three_prime_UTR |
| CTGCATGATGCATTGGAGGG+TGG | 0.681813 | 1_4:+6201620 | Msa0146500:three_prime_UTR |
| ATCCAGAGAACAGATCGAGT+GGG | 0.685169 | 1_4:-6200313 | None:intergenic |
| TTAAGATGGACTGCATGCAA+TGG | 0.702726 | 1_4:-6197768 | None:intergenic |
| CAAACAACACCTGATCACAG+AGG | 0.769583 | 1_4:+6197792 | Msa0146500:CDS |
| TATGTCTCCAGATTTCAGAG+CGG | 0.812751 | 1_4:+6200279 | Msa0146500:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAAAAATGTTTTTTTTTA+AGG | + | chr1_4:6198106-6198125 | Msa0146500:intron | 10.0% |
| !!! | AATTTTTCTATTGATAAAAA+CGG | + | chr1_4:6199149-6199168 | Msa0146500:intron | 10.0% |
| !!! | TTATTATTGGTTTAAATTTT+TGG | + | chr1_4:6200907-6200926 | Msa0146500:intron | 10.0% |
| !!! | CTTTATTTTGTCTTTTATTA+TGG | + | chr1_4:6198652-6198671 | Msa0146500:intron | 15.0% |
| !!! | GTTTTTATCAATAGAAAAAT+TGG | - | chr1_4:6199150-6199169 | None:intergenic | 15.0% |
| !! | AACTAATGATATTCTTTAAT+GGG | - | chr1_4:6199904-6199923 | None:intergenic | 15.0% |
| !! | AAACTAATGATATTCTTTAA+TGG | - | chr1_4:6199905-6199924 | None:intergenic | 15.0% |
| !! | TTTAAACCAATAATAATAAC+TGG | - | chr1_4:6200903-6200922 | None:intergenic | 15.0% |
| !!! | TTTTTTGTAGATAAAGATAA+GGG | - | chr1_4:6201083-6201102 | None:intergenic | 15.0% |
| !! | ATTTATGTGTTGAATTAAGA+GGG | - | chr1_4:6197745-6197764 | None:intergenic | 20.0% |
| !! | TATTTATGTGTTGAATTAAG+AGG | - | chr1_4:6197746-6197765 | None:intergenic | 20.0% |
| !! | AAAAAAGAACTTACATAAGA+AGG | - | chr1_4:6198049-6198068 | None:intergenic | 20.0% |
| !! | AAAGACAAAATAAAGTCAAA+CGG | - | chr1_4:6198647-6198666 | None:intergenic | 20.0% |
| !!! | ACAAGAACTTTTCTATTAAT+AGG | - | chr1_4:6199046-6199065 | None:intergenic | 20.0% |
| !! | ACTTCTTATTCGTAAAAATA+GGG | - | chr1_4:6199188-6199207 | None:intergenic | 20.0% |
| !! | TACTTCTTATTCGTAAAAAT+AGG | - | chr1_4:6199189-6199208 | None:intergenic | 20.0% |
| !!! | AATGTTCATATTTTAACCAA+CGG | - | chr1_4:6199608-6199627 | None:intergenic | 20.0% |
| !! | TTGGTTAAAATATGAACATT+GGG | + | chr1_4:6199608-6199627 | Msa0146500:intron | 20.0% |
| !!! | CATCTATAGTTAAATTTTGT+AGG | - | chr1_4:6200135-6200154 | None:intergenic | 20.0% |
| !! | CTACAAAATTTAACTATAGA+TGG | + | chr1_4:6200133-6200152 | Msa0146500:intron | 20.0% |
| !! | CATATTGAAAAGTTTCTAAT+AGG | - | chr1_4:6200263-6200282 | None:intergenic | 20.0% |
| !!! | AATTTCCGTGTATTTTTAAA+TGG | + | chr1_4:6200389-6200408 | Msa0146500:CDS | 20.0% |
| !! | GAAATTCCAGTTATTATTAT+TGG | + | chr1_4:6200894-6200913 | Msa0146500:intron | 20.0% |
| !!! | CTTTTTTGTAGATAAAGATA+AGG | - | chr1_4:6201084-6201103 | None:intergenic | 20.0% |
| !!! | TATACAGAAAATTGATAGTT+GGG | - | chr1_4:6201436-6201455 | None:intergenic | 20.0% |
| !! | CAAAATAATTATGCAAAAGA+TGG | - | chr1_4:6201475-6201494 | None:intergenic | 20.0% |
| !! | ATATATGAGGAAACAAATAA+TGG | - | chr1_4:6201541-6201560 | None:intergenic | 20.0% |
| !! | TTTATGAGTTATCATATATG+AGG | - | chr1_4:6201554-6201573 | None:intergenic | 20.0% |
| ! | ACATAAGAACAAAATTGTTG+TGG | - | chr1_4:6197844-6197863 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAAAAAACAGA+TGG | + | chr1_4:6197934-6197953 | Msa0146500:intron | 25.0% |
| !!! | CTTGTTTTATGTTTCATGTT+TGG | + | chr1_4:6198172-6198191 | Msa0146500:intron | 25.0% |
| ! | TGGATTGTAAAATTCATGTA+TGG | + | chr1_4:6198192-6198211 | Msa0146500:intron | 25.0% |
| ! | GCAATCATACAAAATTCTAT+TGG | - | chr1_4:6198233-6198252 | None:intergenic | 25.0% |
| ! | ACTTGTGATATTATTTGGAA+AGG | + | chr1_4:6198323-6198342 | Msa0146500:intron | 25.0% |
| !! | ATATGTCTATAAACCGTTTT+CGG | + | chr1_4:6198365-6198384 | Msa0146500:intron | 25.0% |
| ! | GAATTAGTTAAGAACCAATT+AGG | + | chr1_4:6198452-6198471 | Msa0146500:intron | 25.0% |
| ! | GGATATTCTGTTTAATTGTT+TGG | - | chr1_4:6198746-6198765 | None:intergenic | 25.0% |
| ! | AAATGTGTCTTACTTAGATT+GGG | + | chr1_4:6198766-6198785 | Msa0146500:intron | 25.0% |
| !!! | ATGTTCATATTTTAACCAAC+GGG | - | chr1_4:6199607-6199626 | None:intergenic | 25.0% |
| ! | GTTGGTTAAAATATGAACAT+TGG | + | chr1_4:6199607-6199626 | Msa0146500:intron | 25.0% |
| ! | TAATGATATTCTTTAATGGG+AGG | - | chr1_4:6199901-6199920 | None:intergenic | 25.0% |
| ! | CAAAATTTAACTATAGATGG+TGG | + | chr1_4:6200136-6200155 | Msa0146500:intron | 25.0% |
| ! | GAGAACCATTTAAAAATACA+CGG | - | chr1_4:6200397-6200416 | None:intergenic | 25.0% |
| !! | GAATATGTTCAGTTCATTTT+TGG | + | chr1_4:6200947-6200966 | Msa0146500:intron | 25.0% |
| !!! | GGATTTAGTGTGTTTTTATA+CGG | + | chr1_4:6201030-6201049 | Msa0146500:intron | 25.0% |
| ! | TAATCTCACAAGCATTATAA+CGG | - | chr1_4:6201112-6201131 | None:intergenic | 25.0% |
| ! | TGAGATTAAATGTCTTAGTT+CGG | + | chr1_4:6201124-6201143 | Msa0146500:intron | 25.0% |
| ! | TTATTGACCTCGATTTAAAA+CGG | + | chr1_4:6201175-6201194 | Msa0146500:CDS | 25.0% |
| !! | TTTAAAACGGTTGAATAAAG+TGG | + | chr1_4:6201188-6201207 | Msa0146500:CDS | 25.0% |
| ! | TATCACAAAAACATTCTGTA+AGG | - | chr1_4:6201344-6201363 | None:intergenic | 25.0% |
| !! | GTATACAGAAAATTGATAGT+TGG | - | chr1_4:6201437-6201456 | None:intergenic | 25.0% |
| !!! | CTTTCTAAAACATTTACTGT+TGG | + | chr1_4:6201593-6201612 | Msa0146500:three_prime_UTR | 25.0% |
| AAGAACAAAATTGTTGTGGT+TGG | - | chr1_4:6197840-6197859 | None:intergenic | 30.0% | |
| TTCACATGAAAATCTTTGTC+AGG | - | chr1_4:6197926-6197945 | None:intergenic | 30.0% | |
| AATATTGTTCTCTCTTACAC+TGG | + | chr1_4:6198016-6198035 | Msa0146500:CDS | 30.0% | |
| ! | GAAGCACTTGTGATATTATT+TGG | + | chr1_4:6198318-6198337 | Msa0146500:intron | 30.0% |
| TTACGGAATTAATCCGAAAA+CGG | - | chr1_4:6198381-6198400 | None:intergenic | 30.0% | |
| TATCAATTCTGTCAGTAGTT+AGG | + | chr1_4:6198430-6198449 | Msa0146500:intron | 30.0% | |
| TTGAGTAACTAACTCCTAAT+TGG | - | chr1_4:6198469-6198488 | None:intergenic | 30.0% | |
| TTAGGAGTTAGTTACTCAAT+TGG | + | chr1_4:6198470-6198489 | Msa0146500:intron | 30.0% | |
| GTTAGAGATTTAGACTCAAA+GGG | - | chr1_4:6198552-6198571 | None:intergenic | 30.0% | |
| TGTTAGAGATTTAGACTCAA+AGG | - | chr1_4:6198553-6198572 | None:intergenic | 30.0% | |
| TTTCATAAGTCTCAGTTACT+GGG | - | chr1_4:6198601-6198620 | None:intergenic | 30.0% | |
| ! | TTTTCATAAGTCTCAGTTAC+TGG | - | chr1_4:6198602-6198621 | None:intergenic | 30.0% |
| CAATCTAAGTAAGACACATT+TGG | - | chr1_4:6198767-6198786 | None:intergenic | 30.0% | |
| CAAATGTGTCTTACTTAGAT+TGG | + | chr1_4:6198765-6198784 | Msa0146500:intron | 30.0% | |
| ACTTATTTCCTCTTCAGATA+AGG | + | chr1_4:6198899-6198918 | Msa0146500:CDS | 30.0% | |
| TTGAAAACCCATTAACCAAA+TGG | + | chr1_4:6199079-6199098 | Msa0146500:intron | 30.0% | |
| AAAACAGCCATTTGGTTAAT+GGG | - | chr1_4:6199089-6199108 | None:intergenic | 30.0% | |
| AAAAACAGCCATTTGGTTAA+TGG | - | chr1_4:6199090-6199109 | None:intergenic | 30.0% | |
| TGATGATAAAAACAGCCATT+TGG | - | chr1_4:6199097-6199116 | None:intergenic | 30.0% | |
| ! | TACTTTCTAGACTCACATTT+TGG | + | chr1_4:6199268-6199287 | Msa0146500:intron | 30.0% |
| !! | TGATTTTAGTCTTCTCATGT+CGG | + | chr1_4:6199382-6199401 | Msa0146500:CDS | 30.0% |
| TAATTCATGATTTCTGAGCA+AGG | - | chr1_4:6199521-6199540 | None:intergenic | 30.0% | |
| TCATACTAGGTAAATACTAC+CGG | - | chr1_4:6199697-6199716 | None:intergenic | 30.0% | |
| ! | TGATCAGTTTAGTTCATACT+AGG | - | chr1_4:6199710-6199729 | None:intergenic | 30.0% |
| TTTATCTCAACTGATAAGCT+GGG | - | chr1_4:6199831-6199850 | None:intergenic | 30.0% | |
| TATCAGTTGAGATAAAGGTA+TGG | + | chr1_4:6199835-6199854 | Msa0146500:intron | 30.0% | |
| !! | TTAGGCTACATTTTGATGAA+TGG | - | chr1_4:6200000-6200019 | None:intergenic | 30.0% |
| ATCAAAATGTAGCCTAAATG+CGG | + | chr1_4:6200003-6200022 | Msa0146500:intron | 30.0% | |
| TCAGATATGAATCTTGAAGT+AGG | - | chr1_4:6200036-6200055 | None:intergenic | 30.0% | |
| TGCTAAGACAAATGCAATAT+AGG | - | chr1_4:6200163-6200182 | None:intergenic | 30.0% | |
| AGACAAATGATAAAATGCTC+AGG | - | chr1_4:6200191-6200210 | None:intergenic | 30.0% | |
| !! | GCTTAGTTCTAGAAAAATGA+CGG | - | chr1_4:6200241-6200260 | None:intergenic | 30.0% |
| ! | GGCTTTATGAATTCTTTCTT+TGG | - | chr1_4:6200339-6200358 | None:intergenic | 30.0% |
| AGTAGTAAAGAGATCTTTGA+TGG | - | chr1_4:6200360-6200379 | None:intergenic | 30.0% | |
| !! | AATACACGGAAATTGTTTTG+AGG | - | chr1_4:6200383-6200402 | None:intergenic | 30.0% |
| TTAAATGGTTCTCTCATACT+CGG | + | chr1_4:6200404-6200423 | Msa0146500:CDS | 30.0% | |
| TAAATAAGTTCTCTGTGCAT+TGG | - | chr1_4:6200520-6200539 | None:intergenic | 30.0% | |
| CTTGACAATATTGACATAGA+AGG | + | chr1_4:6200602-6200621 | Msa0146500:CDS | 30.0% | |
| !! | TGATGATATGTTTTAGACCA+AGG | + | chr1_4:6200792-6200811 | Msa0146500:CDS | 30.0% |
| !! | TAAGCAAGCCTTTGATTTTA+AGG | + | chr1_4:6200865-6200884 | Msa0146500:CDS | 30.0% |
| TCTGCTTACCTTAAAATCAA+AGG | - | chr1_4:6200876-6200895 | None:intergenic | 30.0% | |
| !!! | TGGTTTAAATTTTTGGTGTC+TGG | + | chr1_4:6200914-6200933 | Msa0146500:intron | 30.0% |
| ATGAACTGAACATATTCGTA+TGG | - | chr1_4:6200944-6200963 | None:intergenic | 30.0% | |
| !!! | TCAGTTCATTTTTGGTTAGT+AGG | + | chr1_4:6200955-6200974 | Msa0146500:intron | 30.0% |
| CCAAGTGTTAAATTGATTGA+AGG | - | chr1_4:6201012-6201031 | None:intergenic | 30.0% | |
| CCTTCAATCAATTTAACACT+TGG | + | chr1_4:6201009-6201028 | Msa0146500:intron | 30.0% | |
| !! | GTTGCTACTTGATTTGTATT+AGG | + | chr1_4:6201146-6201165 | Msa0146500:intron | 30.0% |
| !! | TATTCAACCGTTTTAAATCG+AGG | - | chr1_4:6201185-6201204 | None:intergenic | 30.0% |
| CTATCTTCTTATCTAACTTG+TGG | - | chr1_4:6201221-6201240 | None:intergenic | 30.0% | |
| TTACAAAGAGATGAGCAAAA+TGG | + | chr1_4:6201248-6201267 | Msa0146500:CDS | 30.0% | |
| AAAATGGATCATGGAAGAAA+TGG | + | chr1_4:6201264-6201283 | Msa0146500:CDS | 30.0% | |
| AAATGGAGATGCAAACTTAT+AGG | + | chr1_4:6201281-6201300 | Msa0146500:CDS | 30.0% | |
| AATGGAGATGCAAACTTATA+GGG | + | chr1_4:6201282-6201301 | Msa0146500:CDS | 30.0% | |
| GTGAAGCAAAATATTTATGC+AGG | - | chr1_4:6201390-6201409 | None:intergenic | 30.0% | |
| ! | ATGAGGAAACAAATAATGGA+AGG | - | chr1_4:6201537-6201556 | None:intergenic | 30.0% |
| !! | CAGGTGTTGTTTGATTAAGA+TGG | - | chr1_4:6197785-6197804 | None:intergenic | 35.0% |
| ! | GTTCTTATGTTTGAAACGCA+TGG | + | chr1_4:6197854-6197873 | Msa0146500:intron | 35.0% |
| AGAACTTACATAAGAAGGAG+AGG | - | chr1_4:6198044-6198063 | None:intergenic | 35.0% | |
| ATTAATTCCGTAAGCTCTTC+AGG | + | chr1_4:6198388-6198407 | Msa0146500:intron | 35.0% | |
| TTAATTCCGTAAGCTCTTCA+GGG | + | chr1_4:6198389-6198408 | Msa0146500:intron | 35.0% | |
| TCTGAAGAGGAAATAAGTTC+AGG | - | chr1_4:6198897-6198916 | None:intergenic | 35.0% | |
| AGCAATTTCCTTATCTGAAG+AGG | - | chr1_4:6198910-6198929 | None:intergenic | 35.0% | |
| TCTTCAGATAAGGAAATTGC+TGG | + | chr1_4:6198909-6198928 | Msa0146500:CDS | 35.0% | |
| CTTCAGATAAGGAAATTGCT+GGG | + | chr1_4:6198910-6198929 | Msa0146500:CDS | 35.0% | |
| ! | ACATATTTGGAACCAAGCAA+AGG | - | chr1_4:6198963-6198982 | None:intergenic | 35.0% |
| GTTCCAAATATGTTGATGCT+GGG | + | chr1_4:6198970-6198989 | Msa0146500:CDS | 35.0% | |
| TTCCAAATATGTTGATGCTG+GGG | + | chr1_4:6198971-6198990 | Msa0146500:CDS | 35.0% | |
| AGAACAGGAGAAGAATGAAA+CGG | - | chr1_4:6199007-6199026 | None:intergenic | 35.0% | |
| ! | TTGGTGATTTGTATTCCTCA+AGG | - | chr1_4:6199131-6199150 | None:intergenic | 35.0% |
| AGTAAAGATGTTGCATGAGT+AGG | + | chr1_4:6199205-6199224 | Msa0146500:intron | 35.0% | |
| !! | AGTCTAGAAAGTACCAAAAC+AGG | - | chr1_4:6199261-6199280 | None:intergenic | 35.0% |
| CAATGTAATTCAAGCAGTGT+AGG | - | chr1_4:6199581-6199600 | None:intergenic | 35.0% | |
| !!! | TTCATATTTTAACCAACGGG+AGG | - | chr1_4:6199604-6199623 | None:intergenic | 35.0% |
| ! | CTGACTAGTTAGTGTATGTA+TGG | - | chr1_4:6199751-6199770 | None:intergenic | 35.0% |
| TAAGCTTCGTGTTTCATTTC+AGG | + | chr1_4:6199789-6199808 | Msa0146500:intron | 35.0% | |
| ! | TGTTTCATTTCAGGTAGTCA+AGG | + | chr1_4:6199798-6199817 | Msa0146500:intron | 35.0% |
| TTATCTCAACTGATAAGCTG+GGG | - | chr1_4:6199830-6199849 | None:intergenic | 35.0% | |
| CTTTATCTCAACTGATAAGC+TGG | - | chr1_4:6199832-6199851 | None:intergenic | 35.0% | |
| CAGCTTATCAGTTGAGATAA+AGG | + | chr1_4:6199830-6199849 | Msa0146500:CDS | 35.0% | |
| ! | TGAAAGTACAGATGCATCTA+TGG | + | chr1_4:6200445-6200464 | Msa0146500:CDS | 35.0% |
| GGAAAGCTTGAGAATTGTAA+AGG | + | chr1_4:6200733-6200752 | Msa0146500:CDS | 35.0% | |
| !! | ATGTTTTAGACCAAGGAAAG+AGG | + | chr1_4:6200799-6200818 | Msa0146500:CDS | 35.0% |
| CTCAAGATATACAGTATCGT+AGG | - | chr1_4:6200840-6200859 | None:intergenic | 35.0% | |
| !! | TTTTGGTTAGTAGGTCTTGA+CGG | + | chr1_4:6200964-6200983 | Msa0146500:intron | 35.0% |
| !! | TTAAGATGGACTGCATGCAA+TGG | - | chr1_4:6197771-6197790 | None:intergenic | 40.0% |
| TGAAGAAGATGCAGCTCATT+GGG | + | chr1_4:6197970-6197989 | Msa0146500:CDS | 40.0% | |
| CATTGGGTTTATAGAGGTGA+AGG | + | chr1_4:6197986-6198005 | Msa0146500:CDS | 40.0% | |
| GCAAGCACGTTAGATCTATT+TGG | + | chr1_4:6198266-6198285 | Msa0146500:intron | 40.0% | |
| GGTTCCAAATATGTTGATGC+TGG | + | chr1_4:6198969-6198988 | Msa0146500:CDS | 40.0% | |
| TACCCCAGCATCAACATATT+TGG | - | chr1_4:6198976-6198995 | None:intergenic | 40.0% | |
| ! | CTCAGACATTGATCTAGAAC+AGG | - | chr1_4:6199022-6199041 | None:intergenic | 40.0% |
| !! | GAAAGTACCAAAACAGGTAC+AGG | - | chr1_4:6199255-6199274 | None:intergenic | 40.0% |
| GATCATTCAATCTTCCCTCA+AGG | + | chr1_4:6199404-6199423 | Msa0146500:CDS | 40.0% | |
| TTCAATCTTCCCTCAAGGTA+TGG | + | chr1_4:6199409-6199428 | Msa0146500:intron | 40.0% | |
| GTCTCAAAACCATACCTTGA+GGG | - | chr1_4:6199421-6199440 | None:intergenic | 40.0% | |
| TGTCTCAAAACCATACCTTG+AGG | - | chr1_4:6199422-6199441 | None:intergenic | 40.0% | |
| TTCATTCTGAATGCTGTCTC+CGG | + | chr1_4:6199675-6199694 | Msa0146500:intron | 40.0% | |
| AAATCAAGCCCAAGACAAAG+AGG | - | chr1_4:6199961-6199980 | None:intergenic | 40.0% | |
| GTAGGAAGAAATCCGCATTT+AGG | - | chr1_4:6200018-6200037 | None:intergenic | 40.0% | |
| CTGAAGAAACTGCTATCAAG+AGG | + | chr1_4:6200052-6200071 | Msa0146500:CDS | 40.0% | |
| AAGAAACTGCTATCAAGAGG+AGG | + | chr1_4:6200055-6200074 | Msa0146500:CDS | 40.0% | |
| !! | CAAGCTCTGAAATTGCAACA+TGG | + | chr1_4:6200099-6200118 | Msa0146500:CDS | 40.0% |
| ! | TCTGAAATTGCAACATGGAG+AGG | + | chr1_4:6200104-6200123 | Msa0146500:CDS | 40.0% |
| TATGTCTCCAGATTTCAGAG+CGG | + | chr1_4:6200279-6200298 | Msa0146500:intron | 40.0% | |
| ACTTGAAGATGAACTTCAGC+CGG | + | chr1_4:6200475-6200494 | Msa0146500:CDS | 40.0% | |
| ! | AAGGACTCCTGATTTTTGCA+CGG | - | chr1_4:6200558-6200577 | None:intergenic | 40.0% |
| CATTACTTCTCAACAGAGCA+TGG | + | chr1_4:6200646-6200665 | Msa0146500:CDS | 40.0% | |
| ! | TTTTAGACCAAGGAAAGAGG+AGG | + | chr1_4:6200802-6200821 | Msa0146500:CDS | 40.0% |
| TTTAGACCAAGGAAAGAGGA+GGG | + | chr1_4:6200803-6200822 | Msa0146500:CDS | 40.0% | |
| GAGATGAGCAAAATGGATCA+TGG | + | chr1_4:6201255-6201274 | Msa0146500:CDS | 40.0% | |
| AAGTCTCAGTATGCAACTTC+AGG | - | chr1_4:6201309-6201328 | None:intergenic | 40.0% | |
| TGGTATTCTGCATGATGCAT+TGG | + | chr1_4:6201613-6201632 | Msa0146500:three_prime_UTR | 40.0% | |
| TATTCTGCATGATGCATTGG+AGG | + | chr1_4:6201616-6201635 | Msa0146500:three_prime_UTR | 40.0% | |
| ATTCTGCATGATGCATTGGA+GGG | + | chr1_4:6201617-6201636 | Msa0146500:three_prime_UTR | 40.0% | |
| CAAACAACACCTGATCACAG+AGG | + | chr1_4:6197792-6197811 | Msa0146500:CDS | 45.0% | |
| CTGAAGAAGATGCAGCTCAT+TGG | + | chr1_4:6197969-6197988 | Msa0146500:CDS | 45.0% | |
| GCAGCTCATTGGGTTTATAG+AGG | + | chr1_4:6197980-6197999 | Msa0146500:CDS | 45.0% | |
| AAGCAACCCTGAAGAGCTTA+CGG | - | chr1_4:6198398-6198417 | None:intergenic | 45.0% | |
| TTACTGGGATCATCAGGAGA+GGG | - | chr1_4:6198586-6198605 | None:intergenic | 45.0% | |
| TCTCAGTTACTGGGATCATC+AGG | - | chr1_4:6198592-6198611 | None:intergenic | 45.0% | |
| TTCATGTGGAGTCAGAGCTA+TGG | - | chr1_4:6198853-6198872 | None:intergenic | 45.0% | |
| !! | TAGCTCTGACTCCACATGAA+CGG | + | chr1_4:6198853-6198872 | Msa0146500:CDS | 45.0% |
| CATGTCATGAAGCCTTTGCT+TGG | + | chr1_4:6198948-6198967 | Msa0146500:CDS | 45.0% | |
| ATCACTCTGTGCTTACCTTG+AGG | + | chr1_4:6199113-6199132 | Msa0146500:intron | 45.0% | |
| ! | TCTCTGACCTGTACCTGTTT+TGG | + | chr1_4:6199245-6199264 | Msa0146500:intron | 45.0% |
| !! | GACTCACATTTTGGTGACCA+AGG | + | chr1_4:6199277-6199296 | Msa0146500:intron | 45.0% |
| GACCAAGGAATTCCTTGAGA+CGG | + | chr1_4:6199292-6199311 | Msa0146500:CDS | 45.0% | |
| AACCGTCTCAAGGAATTCCT+TGG | - | chr1_4:6199297-6199316 | None:intergenic | 45.0% | |
| CATTCTTCTCAACCGTCTCA+AGG | - | chr1_4:6199307-6199326 | None:intergenic | 45.0% | |
| !! | TGGGCGAGTTGATGTTTCAA+GGG | + | chr1_4:6199346-6199365 | Msa0146500:CDS | 45.0% |
| TGAATTACATTGCCTCCCGT+TGG | + | chr1_4:6199589-6199608 | Msa0146500:intron | 45.0% | |
| AGACAAAGAGGAAGAGGGAA+GGG | - | chr1_4:6199949-6199968 | None:intergenic | 45.0% | |
| AAGACAAAGAGGAAGAGGGA+AGG | - | chr1_4:6199950-6199969 | None:intergenic | 45.0% | |
| TTCCCTCTTCCTCTTTGTCT+TGG | + | chr1_4:6199949-6199968 | Msa0146500:intron | 45.0% | |
| TCCCTCTTCCTCTTTGTCTT+GGG | + | chr1_4:6199950-6199969 | Msa0146500:intron | 45.0% | |
| ATCCAGAGAACAGATCGAGT+GGG | - | chr1_4:6200316-6200335 | None:intergenic | 45.0% | |
| AATGGTTCTCTCATACTCGG+AGG | + | chr1_4:6200407-6200426 | Msa0146500:CDS | 45.0% | |
| ATGGTTCTCTCATACTCGGA+GGG | + | chr1_4:6200408-6200427 | Msa0146500:CDS | 45.0% | |
| CCATCATCAGCTTGAATGAC+CGG | - | chr1_4:6200497-6200516 | None:intergenic | 45.0% | |
| ACTGAAGCCGTGCAAAAATC+AGG | + | chr1_4:6200548-6200567 | Msa0146500:CDS | 45.0% | |
| AGTCCTTGATAAGCTCCTTG+AGG | + | chr1_4:6200571-6200590 | Msa0146500:CDS | 45.0% | |
| GAACCTCAAGGAGCTTATCA+AGG | - | chr1_4:6200577-6200596 | None:intergenic | 45.0% | |
| TGTCAAGCTTCTGAACCTCA+AGG | - | chr1_4:6200589-6200608 | None:intergenic | 45.0% | |
| CAGTGATGCAGAATGCAAAG+AGG | - | chr1_4:6200711-6200730 | None:intergenic | 45.0% | |
| CTCTTTGCATTCTGCATCAC+TGG | + | chr1_4:6200709-6200728 | Msa0146500:CDS | 45.0% | |
| TTTGCATTCTGCATCACTGG+AGG | + | chr1_4:6200712-6200731 | Msa0146500:CDS | 45.0% | |
| ! | CTTTTGCAGTTGCTGCTATC+AGG | - | chr1_4:6200763-6200782 | None:intergenic | 45.0% |
| CGTTGTGTTCCTCTGTGATC+AGG | - | chr1_4:6197804-6197823 | None:intergenic | 50.0% | |
| TCACAGAGGAACACAACGCA+AGG | + | chr1_4:6197806-6197825 | Msa0146500:CDS | 50.0% | |
| GTTACTGGGATCATCAGGAG+AGG | - | chr1_4:6198587-6198606 | None:intergenic | 50.0% | |
| CATTCGCAAGTCTCCAAGGA+AGG | + | chr1_4:6198800-6198819 | Msa0146500:CDS | 50.0% | |
| !! | TGCAACGCTGATTCCTTCCT+TGG | - | chr1_4:6198816-6198835 | None:intergenic | 50.0% |
| AGGAAGGAATCAGCGTTGCA+AGG | + | chr1_4:6198816-6198835 | Msa0146500:CDS | 50.0% | |
| AATCAGCGTTGCAAGGAGTG+AGG | + | chr1_4:6198823-6198842 | Msa0146500:CDS | 50.0% | |
| TTCCAGATGAGCCGTTCATG+TGG | - | chr1_4:6198867-6198886 | None:intergenic | 50.0% | |
| AAACATCAACTCGCCCAGCA+GGG | - | chr1_4:6199343-6199362 | None:intergenic | 50.0% | |
| !! | CTGGGCGAGTTGATGTTTCA+AGG | + | chr1_4:6199345-6199364 | Msa0146500:CDS | 50.0% |
| GCCCAAGACAAAGAGGAAGA+GGG | - | chr1_4:6199954-6199973 | None:intergenic | 50.0% | |
| AGCCCAAGACAAAGAGGAAG+AGG | - | chr1_4:6199955-6199974 | None:intergenic | 50.0% | |
| !! | ACACACTCCGCTCTGAAATC+TGG | - | chr1_4:6200289-6200308 | None:intergenic | 50.0% |
| AACCCACTCGATCTGTTCTC+TGG | + | chr1_4:6200311-6200330 | Msa0146500:CDS | 50.0% | |
| GATCCAGAGAACAGATCGAG+TGG | - | chr1_4:6200317-6200336 | None:intergenic | 50.0% | |
| CCGGTCATTCAAGCTGATGA+TGG | + | chr1_4:6200494-6200513 | Msa0146500:CDS | 50.0% | |
| GAGCATGGCGCGTAAAGAAT+TGG | + | chr1_4:6200661-6200680 | Msa0146500:CDS | 50.0% | |
| CTACCCTCCTCACATGCTAT+TGG | + | chr1_4:6201409-6201428 | Msa0146500:three_prime_UTR | 50.0% | |
| GGACCAATAGCATGTGAGGA+GGG | - | chr1_4:6201415-6201434 | None:intergenic | 50.0% | |
| GTTGGGACCAATAGCATGTG+AGG | - | chr1_4:6201419-6201438 | None:intergenic | 50.0% | |
| TGGGATCATCAGGAGAGGGA+AGG | - | chr1_4:6198582-6198601 | None:intergenic | 55.0% | |
| TGCGCATTCGCAAGTCTCCA+AGG | + | chr1_4:6198796-6198815 | Msa0146500:CDS | 55.0% | |
| CTCCACATGAACGGCTCATC+TGG | + | chr1_4:6198862-6198881 | Msa0146500:CDS | 55.0% | |
| TTGCTAGTCAACGCCCTGCT+GGG | + | chr1_4:6199327-6199346 | Msa0146500:CDS | 55.0% | |
| GAAACATCAACTCGCCCAGC+AGG | - | chr1_4:6199344-6199363 | None:intergenic | 55.0% | |
| TCTCTCATACTCGGAGGGCT+TGG | + | chr1_4:6200413-6200432 | Msa0146500:CDS | 55.0% | |
| CCAGAACCCTCCTCTTTCCT+TGG | - | chr1_4:6200812-6200831 | None:intergenic | 55.0% | |
| CCAAGGAAAGAGGAGGGTTC+TGG | + | chr1_4:6200809-6200828 | Msa0146500:CDS | 55.0% | |
| GGGACCAATAGCATGTGAGG+AGG | - | chr1_4:6201416-6201435 | None:intergenic | 55.0% | |
| CTGCATGATGCATTGGAGGG+TGG | + | chr1_4:6201620-6201639 | Msa0146500:three_prime_UTR | 55.0% | |
| GTTGCTAGTCAACGCCCTGC+TGG | + | chr1_4:6199326-6199345 | Msa0146500:CDS | 60.0% | |
| CTCATACTCGGAGGGCTTGG+AGG | + | chr1_4:6200416-6200435 | Msa0146500:CDS | 60.0% | |
| ATACTCGGAGGGCTTGGAGG+TGG | + | chr1_4:6200419-6200438 | Msa0146500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6197723 | 6201656 | 6197723 | ID=Msa0146500;Name=Msa0146500 |
| chr1_4 | mRNA | 6197723 | 6201656 | 6197723 | ID=Msa0146500-mRNA-1;Parent=Msa0146500;Name=Msa0146500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=12|1|1|1|1|1|8|354|478 |
| chr1_4 | exon | 6197723 | 6197827 | 6197723 | ID=Msa0146500-mRNA-1:exon:2698;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6197953 | 6198054 | 6197953 | ID=Msa0146500-mRNA-1:exon:2699;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6198783 | 6198992 | 6198783 | ID=Msa0146500-mRNA-1:exon:2700;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6199278 | 6199425 | 6199278 | ID=Msa0146500-mRNA-1:exon:2701;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6199811 | 6199851 | 6199811 | ID=Msa0146500-mRNA-1:exon:2702;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6200015 | 6200125 | 6200015 | ID=Msa0146500-mRNA-1:exon:2703;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6200290 | 6200886 | 6200290 | ID=Msa0146500-mRNA-1:exon:2704;Parent=Msa0146500-mRNA-1 |
| chr1_4 | exon | 6201168 | 6201656 | 6201168 | ID=Msa0146500-mRNA-1:exon:2705;Parent=Msa0146500-mRNA-1 |
| chr1_4 | five_prime_UTR | 6197723 | 6197734 | 6197723 | ID=Msa0146500-mRNA-1:five_prime_utr;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6197735 | 6197827 | 6197735 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6197953 | 6198054 | 6197953 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6198783 | 6198992 | 6198783 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6199278 | 6199425 | 6199278 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6199811 | 6199851 | 6199811 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6200015 | 6200125 | 6200015 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6200290 | 6200886 | 6200290 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | CDS | 6201168 | 6201302 | 6201168 | ID=Msa0146500-mRNA-1:cds;Parent=Msa0146500-mRNA-1 |
| chr1_4 | three_prime_UTR | 6201303 | 6201656 | 6201303 | ID=Msa0146500-mRNA-1:three_prime_utr;Parent=Msa0146500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
