Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003440 | sp|Q93YN9|IPPK_ARATH | 53.636 | 440 | 201 | 2 | 32 | 470 | 1 | 438 | 1.58e-161 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003440 | Msa0102680 | 0.844412 | 7.683973e-59 | -8.615850e-47 |
| Msa0003440 | Msa0102750 | 0.813906 | 2.018643e-51 | -8.615850e-47 |
| Msa0003440 | Msa0146500 | 0.880184 | 6.764095e-70 | -8.615850e-47 |
| Msa0003440 | Msa1221900 | 0.805982 | 1.026192e-49 | -8.615850e-47 |
| Msa0003440 | Msa1227200 | 0.842306 | 2.802912e-58 | -8.615850e-47 |
| Msa0003440 | Msa1337730 | 0.803408 | 3.536936e-49 | -8.615850e-47 |
| Msa0003440 | Msa1385640 | 0.809396 | 1.931554e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003440 | MtrunA17_Chr1g0155511 | 97.280 | 478 | 13 | 0 | 1 | 478 | 1 | 478 | 0.0 | 967 |
| Msa0003440 | MtrunA17_Chr3g0141811 | 69.910 | 442 | 133 | 0 | 32 | 473 | 1 | 442 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003440 | AT1G22100.1 | 54.587 | 436 | 191 | 3 | 33 | 467 | 3 | 432 | 3.60e-163 | 469 |
| Msa0003440 | AT5G42810.1 | 53.636 | 440 | 201 | 2 | 32 | 470 | 1 | 438 | 1.61e-162 | 467 |
| Msa0003440 | AT1G59312.2 | 49.327 | 446 | 216 | 6 | 33 | 471 | 3 | 445 | 2.26e-143 | 419 |
| Msa0003440 | AT1G58643.2 | 49.327 | 446 | 216 | 6 | 33 | 471 | 3 | 445 | 2.26e-143 | 419 |
| Msa0003440 | AT1G59312.1 | 49.776 | 446 | 214 | 7 | 33 | 471 | 38 | 480 | 6.71e-143 | 419 |
| Msa0003440 | AT1G58936.1 | 49.776 | 446 | 214 | 7 | 33 | 471 | 38 | 480 | 6.71e-143 | 419 |
| Msa0003440 | AT1G58643.1 | 49.776 | 446 | 214 | 7 | 33 | 471 | 38 | 480 | 6.71e-143 | 419 |
Find 113 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTCTAGACTCACATTT+TGG | 0.211675 | 1_1:-5958202 | Msa0003440:intron |
| GGCTTTATGAATTCTTTCTT+TGG | 0.242124 | 1_1:+5957115 | None:intergenic |
| TACCCCAGCATCAACATATT+TGG | 0.257064 | 1_1:+5958497 | None:intergenic |
| AAATGGAGATGCAAACTTAT+AGG | 0.304541 | 1_1:-5956169 | Msa0003440:exon |
| CTCCACATGAACGGCTCATC+TGG | 0.312520 | 1_1:-5958608 | Msa0003440:CDS |
| CAGCTTATCAGTTGAGATAA+AGG | 0.331799 | 1_1:-5957620 | Msa0003440:intron |
| TGCAACGCTGATTCCTTCCT+TGG | 0.337708 | 1_1:+5958657 | None:intergenic |
| AATGGAGATGCAAACTTATA+GGG | 0.348706 | 1_1:-5956168 | Msa0003440:exon |
| GTTGCTAGTCAACGCCCTGC+TGG | 0.357402 | 1_1:-5958144 | Msa0003440:CDS |
| CCAAGGAAAGAGGAGGGTTC+TGG | 0.359741 | 1_1:-5956642 | Msa0003440:CDS |
| AATCTTGTTCTCTCTTACAC+TGG | 0.365824 | 1_1:-5959454 | Msa0003440:CDS |
| CTGGGCGAGTTGATGTTTCA+AGG | 0.365906 | 1_1:-5958125 | Msa0003440:CDS |
| GTAGGAAGAAATCCGCATTT+AGG | 0.391832 | 1_1:+5957436 | None:intergenic |
| CTCTTTGCATTCTGCATCAC+TGG | 0.393035 | 1_1:-5956742 | Msa0003440:CDS |
| AAGTCTCAGTATGCAACTTC+AGG | 0.393468 | 1_1:+5956144 | None:intergenic |
| CCAGAACCCTCCTCTTTCCT+TGG | 0.396286 | 1_1:+5956642 | None:intergenic |
| TTACAAAGAGATGAGCAAAA+TGG | 0.397598 | 1_1:-5956202 | Msa0003440:CDS |
| GAGCATGGCGCGTAAAGAAT+TGG | 0.400860 | 1_1:-5956790 | Msa0003440:CDS |
| AGTAGTAAAGAGATCTTTGA+TGG | 0.402587 | 1_1:+5957094 | None:intergenic |
| GGTTCCAAATATGTTGATGC+TGG | 0.410935 | 1_1:-5958501 | Msa0003440:CDS |
| TTTATGAGTTATCATATATG+AGG | 0.412078 | 1_1:+5955905 | None:intergenic |
| TGAAGAAGATGCAGCTCATT+GGG | 0.412372 | 1_1:-5959500 | Msa0003440:CDS |
| AAAATGGATCATGGAAGAAA+TGG | 0.413794 | 1_1:-5956186 | Msa0003440:CDS |
| CTGAAGAAGATGCAGCTCAT+TGG | 0.417078 | 1_1:-5959501 | Msa0003440:CDS |
| CTTTATCTCAACTGATAAGC+TGG | 0.418788 | 1_1:+5957621 | None:intergenic |
| TCTCTCATACTCGGAGGGCT+TGG | 0.418888 | 1_1:-5957038 | Msa0003440:CDS |
| TGAAAGTACAGATGCATCTA+TGG | 0.423587 | 1_1:-5957006 | Msa0003440:CDS |
| AACCCACTCGATCTGTTCTC+TGG | 0.426001 | 1_1:-5957140 | Msa0003440:CDS |
| TTATTATGTGTTGAATTAAG+AGG | 0.426406 | 1_1:+5959727 | None:intergenic |
| ATATATGAGGAAACAAATAA+TGG | 0.426540 | 1_1:+5955918 | None:intergenic |
| CTCATACTCGGAGGGCTTGG+AGG | 0.427893 | 1_1:-5957035 | Msa0003440:CDS |
| CTACCCTCCTCACATGCTAT+TGG | 0.428346 | 1_1:-5956041 | Msa0003440:three_prime_UTR |
| CGTTGTGTTCCTCTGTGATC+AGG | 0.433813 | 1_1:+5959669 | None:intergenic |
| TCTTCAGATAAGGAAATTGC+TGG | 0.438795 | 1_1:-5958561 | Msa0003440:CDS |
| TATACAGAAAATTGATAGTT+GGG | 0.446477 | 1_1:+5956017 | None:intergenic |
| CATGTCATGAAGCCTTTGCT+TGG | 0.452650 | 1_1:-5958522 | Msa0003440:CDS |
| CAGGTGTTGTTTGATTAAGA+TGG | 0.453937 | 1_1:+5959688 | None:intergenic |
| CTTGACAATATTGACATAGA+AGG | 0.455818 | 1_1:-5956849 | Msa0003440:CDS |
| ACTTATTTCCTCTTCAGATA+AGG | 0.460694 | 1_1:-5958571 | Msa0003440:CDS |
| TTTAAAACGGTTGAATAAAG+TGG | 0.467422 | 1_1:-5956262 | Msa0003440:CDS |
| GAAACATCAACTCGCCCAGC+AGG | 0.473865 | 1_1:+5958129 | None:intergenic |
| GTATACAGAAAATTGATAGT+TGG | 0.485821 | 1_1:+5956016 | None:intergenic |
| TCAGATATGAATCTTGAAGT+AGG | 0.485966 | 1_1:+5957418 | None:intergenic |
| TCTGCTTACCTTAAAATCAA+AGG | 0.487614 | 1_1:+5956578 | None:intergenic |
| GCAGCTCATTGGGTTTATAG+AGG | 0.490643 | 1_1:-5959490 | Msa0003440:CDS |
| CTTTCTAAAACATTTACTGT+TGG | 0.491392 | 1_1:-5955865 | Msa0003440:three_prime_UTR |
| CCATCATCAGCTTGAATGAC+CGG | 0.498277 | 1_1:+5956957 | None:intergenic |
| TTATTGACCTCGATTTAAAA+CGG | 0.501967 | 1_1:-5956275 | Msa0003440:CDS |
| GTGAAGCAAAATATTTATGC+AGG | 0.504797 | 1_1:+5956063 | None:intergenic |
| TCTGAAGAGGAAATAAGTTC+AGG | 0.504962 | 1_1:+5958576 | None:intergenic |
| AGCAATTTCCTTATCTGAAG+AGG | 0.506496 | 1_1:+5958563 | None:intergenic |
| AACCGTCTCAAGGAATTCCT+TGG | 0.514592 | 1_1:+5958176 | None:intergenic |
| GAGATGAGCAAAATGGATCA+TGG | 0.515742 | 1_1:-5956195 | Msa0003440:CDS |
| TATTATGTGTTGAATTAAGA+GGG | 0.518245 | 1_1:+5959728 | None:intergenic |
| GGAAAGCTTGAGAATTGTAA+AGG | 0.520521 | 1_1:-5956718 | Msa0003440:CDS |
| TTGCTAGTCAACGCCCTGCT+GGG | 0.522802 | 1_1:-5958143 | Msa0003440:CDS |
| GTCTCAAAACCATACCTTGA+GGG | 0.523276 | 1_1:+5958052 | None:intergenic |
| TTAAATGGTTCTCTCATACT+CGG | 0.530482 | 1_1:-5957047 | Msa0003440:CDS |
| TTTATCTCAACTGATAAGCT+GGG | 0.534076 | 1_1:+5957622 | None:intergenic |
| GTTCCAAATATGTTGATGCT+GGG | 0.535103 | 1_1:-5958500 | Msa0003440:CDS |
| GAACCTCAAGGAGCTTATCA+AGG | 0.536139 | 1_1:+5956877 | None:intergenic |
| CCGGTCATTCAAGCTGATGA+TGG | 0.539433 | 1_1:-5956957 | Msa0003440:CDS |
| TAAATAAGTTCTCTGTGCAT+TGG | 0.540290 | 1_1:+5956934 | None:intergenic |
| ATACTCGGAGGGCTTGGAGG+TGG | 0.540855 | 1_1:-5957032 | Msa0003440:CDS |
| CATTCTTCTCAACCGTCTCA+AGG | 0.543125 | 1_1:+5958166 | None:intergenic |
| TATTCTGCATGATGCATTGG+AGG | 0.545251 | 1_1:-5955842 | Msa0003440:three_prime_UTR |
| CATTGGGTTTATAGAGGTGA+AGG | 0.550198 | 1_1:-5959484 | Msa0003440:CDS |
| TGGTATTCTGCATGATGCAT+TGG | 0.555583 | 1_1:-5955845 | Msa0003440:three_prime_UTR |
| TGTTTCATTTCAGGTAGTCA+AGG | 0.559197 | 1_1:-5957652 | Msa0003440:intron |
| CTATCTTCTTATCTAACTTG+TGG | 0.562101 | 1_1:+5956232 | None:intergenic |
| ATGAGGAAACAAATAATGGA+AGG | 0.577913 | 1_1:+5955922 | None:intergenic |
| ACTTGAAGATGAACTTCAGC+CGG | 0.579402 | 1_1:-5956976 | Msa0003440:CDS |
| ATGGTTCTCTCATACTCGGA+GGG | 0.583585 | 1_1:-5957043 | Msa0003440:CDS |
| ACATATTTGGAACCAAGCAA+AGG | 0.590042 | 1_1:+5958510 | None:intergenic |
| TGGGCGAGTTGATGTTTCAA+GGG | 0.590970 | 1_1:-5958124 | Msa0003440:CDS |
| TTCATGTGGAGTCAGAGCTA+TGG | 0.596545 | 1_1:+5958620 | None:intergenic |
| CATTCGCAAGTCTCCAAGGA+AGG | 0.599728 | 1_1:-5958670 | Msa0003440:CDS |
| ATCAAAATGTAGCCTAAATG+CGG | 0.601221 | 1_1:-5957448 | Msa0003440:intron |
| TTTGCATTCTGCATCACTGG+AGG | 0.601325 | 1_1:-5956739 | Msa0003440:CDS |
| TCTGAAATTGCAACATGGAG+AGG | 0.602662 | 1_1:-5957347 | Msa0003440:intron |
| TTCCAGATGAGCCGTTCATG+TGG | 0.604622 | 1_1:+5958606 | None:intergenic |
| TGCGCATTCGCAAGTCTCCA+AGG | 0.605257 | 1_1:-5958674 | Msa0003440:CDS |
| GACCAAGGAATTCCTTGAGA+CGG | 0.607660 | 1_1:-5958178 | Msa0003440:CDS |
| GATCATTCAATCTTCCCTCA+AGG | 0.608947 | 1_1:-5958066 | Msa0003440:intron |
| CTGAAGAAACTGCTATCAAG+AGG | 0.610082 | 1_1:-5957399 | Msa0003440:CDS |
| AGGAAGGAATCAGCGTTGCA+AGG | 0.612808 | 1_1:-5958654 | Msa0003440:CDS |
| CTCAAGATATACAGTATCGT+AGG | 0.616260 | 1_1:+5956614 | None:intergenic |
| CATTACTTCTCAACAGAGCA+TGG | 0.616815 | 1_1:-5956805 | Msa0003440:CDS |
| TAGCTCTGACTCCACATGAA+CGG | 0.620751 | 1_1:-5958617 | Msa0003440:CDS |
| TTTAGACCAAGGAAAGAGGA+GGG | 0.622681 | 1_1:-5956648 | Msa0003440:CDS |
| CTTCAGATAAGGAAATTGCT+GGG | 0.625703 | 1_1:-5958560 | Msa0003440:CDS |
| AAGAAACTGCTATCAAGAGG+AGG | 0.628067 | 1_1:-5957396 | Msa0003440:CDS |
| GTTGGGACCAATAGCATGTG+AGG | 0.633773 | 1_1:+5956034 | None:intergenic |
| TGTCAAGCTTCTGAACCTCA+AGG | 0.634666 | 1_1:+5956865 | None:intergenic |
| AGAACTTACATAAGAAGGAG+AGG | 0.634781 | 1_1:+5959429 | None:intergenic |
| GGACCAATAGCATGTGAGGA+GGG | 0.635570 | 1_1:+5956038 | None:intergenic |
| GATCCAGAGAACAGATCGAG+TGG | 0.637943 | 1_1:+5957137 | None:intergenic |
| AATCAGCGTTGCAAGGAGTG+AGG | 0.642103 | 1_1:-5958647 | Msa0003440:CDS |
| CAGTGATGCAGAATGCAAAG+AGG | 0.642291 | 1_1:+5956743 | None:intergenic |
| AGTCCTTGATAAGCTCCTTG+AGG | 0.646197 | 1_1:-5956880 | Msa0003440:CDS |
| CAAGCTCTGAAATTGCAACA+TGG | 0.647998 | 1_1:-5957352 | Msa0003440:CDS |
| GGGACCAATAGCATGTGAGG+AGG | 0.649926 | 1_1:+5956037 | None:intergenic |
| TTCCAAATATGTTGATGCTG+GGG | 0.654226 | 1_1:-5958499 | Msa0003440:intron |
| AAACATCAACTCGCCCAGCA+GGG | 0.655838 | 1_1:+5958130 | None:intergenic |
| TCACAGAGGAACACAACGCA+AGG | 0.662619 | 1_1:-5959664 | Msa0003440:intron |
| TTATCTCAACTGATAAGCTG+GGG | 0.664084 | 1_1:+5957623 | None:intergenic |
| AATGGTTCTCTCATACTCGG+AGG | 0.667393 | 1_1:-5957044 | Msa0003440:CDS |
| ATTCTGCATGATGCATTGGA+GGG | 0.667493 | 1_1:-5955841 | Msa0003440:three_prime_UTR |
| CTGCATGATGCATTGGAGGG+TGG | 0.681813 | 1_1:-5955838 | Msa0003440:three_prime_UTR |
| ATCCAGAGAACAGATCGAGT+GGG | 0.685169 | 1_1:+5957138 | None:intergenic |
| TTAAGATGGACTGCATGCAA+TGG | 0.702726 | 1_1:+5959702 | None:intergenic |
| CAAACAACACCTGATCACAG+AGG | 0.769583 | 1_1:-5959678 | Msa0003440:CDS |
| TATGTCTTCAGATTTCAGAG+CGG | 0.776737 | 1_1:-5957172 | Msa0003440:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAAAAAATGTTTTTTTTA+AGG | - | chr1_1:5956207-5956226 | Msa0003440:CDS | 10.0% |
| !!! | AATTTTTCTATTGATAAAAA+CGG | - | chr1_1:5957250-5957269 | Msa0003440:intron | 10.0% |
| !!! | TTATTATTGGTTTAAATTTT+TGG | - | chr1_1:5959028-5959047 | Msa0003440:intron | 10.0% |
| !!! | CTTTATTTTGTCTTTTATTA+TGG | - | chr1_1:5956753-5956772 | Msa0003440:CDS | 15.0% |
| !!! | GTTTTTATCAATAGAAAAAT+TGG | + | chr1_1:5957251-5957270 | None:intergenic | 15.0% |
| !! | AACTAATGATATTCTTTAAT+GGG | + | chr1_1:5958024-5958043 | None:intergenic | 15.0% |
| !! | AAACTAATGATATTCTTTAA+TGG | + | chr1_1:5958025-5958044 | None:intergenic | 15.0% |
| !! | AAATTTCCAGTTATTATTAT+TGG | - | chr1_1:5959015-5959034 | Msa0003440:intron | 15.0% |
| !! | TTTAAACCAATAATAATAAC+TGG | + | chr1_1:5959024-5959043 | None:intergenic | 15.0% |
| !!! | TTTTTTGTAGATAAAGATAA+GGG | + | chr1_1:5959204-5959223 | None:intergenic | 15.0% |
| !! | TATTATGTGTTGAATTAAGA+GGG | + | chr1_1:5955846-5955865 | None:intergenic | 20.0% |
| !! | TTATTATGTGTTGAATTAAG+AGG | + | chr1_1:5955847-5955866 | None:intergenic | 20.0% |
| !! | AAAAAAGAACTTACATAAGA+AGG | + | chr1_1:5956150-5956169 | None:intergenic | 20.0% |
| !!! | ATATGTCTATAAACTGTTTT+CGG | - | chr1_1:5956466-5956485 | Msa0003440:intron | 20.0% |
| !! | AAAGACAAAATAAAGTCAAA+CGG | + | chr1_1:5956748-5956767 | None:intergenic | 20.0% |
| !!! | ACAAGAACTTTTCTATTAAT+AGG | + | chr1_1:5957147-5957166 | None:intergenic | 20.0% |
| !! | ACTTCTTATTCGTAAAAATA+GGG | + | chr1_1:5957289-5957308 | None:intergenic | 20.0% |
| !! | TACTTCTTATTCGTAAAAAT+AGG | + | chr1_1:5957290-5957309 | None:intergenic | 20.0% |
| !!! | AATGTTCATATTTTAACCAA+CGG | + | chr1_1:5957729-5957748 | None:intergenic | 20.0% |
| !! | TTGGTTAAAATATGAACATT+GGG | - | chr1_1:5957729-5957748 | Msa0003440:intron | 20.0% |
| !!! | CATCTATAGTTAAATTTTGT+AGG | + | chr1_1:5958255-5958274 | None:intergenic | 20.0% |
| !! | CTACAAAATTTAACTATAGA+TGG | - | chr1_1:5958253-5958272 | Msa0003440:intron | 20.0% |
| !! | CATATTGAAAAGTTTCTAAT+AGG | + | chr1_1:5958383-5958402 | None:intergenic | 20.0% |
| !!! | AATTTCCGTGTATTTTTAAA+TGG | - | chr1_1:5958509-5958528 | Msa0003440:CDS | 20.0% |
| !!! | CTTTTTTGTAGATAAAGATA+AGG | + | chr1_1:5959205-5959224 | None:intergenic | 20.0% |
| !!! | TATACAGAAAATTGATAGTT+GGG | + | chr1_1:5959557-5959576 | None:intergenic | 20.0% |
| !! | ATATATGAGGAAACAAATAA+TGG | + | chr1_1:5959656-5959675 | None:intergenic | 20.0% |
| !! | TTTATGAGTTATCATATATG+AGG | + | chr1_1:5959669-5959688 | None:intergenic | 20.0% |
| ! | ACATAAGAACAAAATTGTTG+TGG | + | chr1_1:5955945-5955964 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAAAAAACAGA+TGG | - | chr1_1:5956035-5956054 | Msa0003440:three_prime_UTR | 25.0% |
| !!! | CTTGTTTTATGTTTCATGTT+TGG | - | chr1_1:5956273-5956292 | Msa0003440:CDS | 25.0% |
| ! | GCAATCATACAAAATTCTAT+TGG | + | chr1_1:5956334-5956353 | None:intergenic | 25.0% |
| ! | ACTTGTGATATTATTTGGAA+AGG | - | chr1_1:5956424-5956443 | Msa0003440:intron | 25.0% |
| ! | GAATTAGTTAAGAACCAATT+AGG | - | chr1_1:5956553-5956572 | Msa0003440:intron | 25.0% |
| ! | GGATATTCTGTTTAATTGTT+TGG | + | chr1_1:5956847-5956866 | None:intergenic | 25.0% |
| ! | AAATGTGTCTTACTTAGATT+GGG | - | chr1_1:5956867-5956886 | Msa0003440:CDS | 25.0% |
| !!! | ATGTTCATATTTTAACCAAC+GGG | + | chr1_1:5957728-5957747 | None:intergenic | 25.0% |
| ! | GTTGGTTAAAATATGAACAT+TGG | - | chr1_1:5957728-5957747 | Msa0003440:intron | 25.0% |
| ! | TAATGATATTCTTTAATGGG+AGG | + | chr1_1:5958021-5958040 | None:intergenic | 25.0% |
| ! | CAAAATTTAACTATAGATGG+TGG | - | chr1_1:5958256-5958275 | Msa0003440:intron | 25.0% |
| ! | GAGAACCATTTAAAAATACA+CGG | + | chr1_1:5958517-5958536 | None:intergenic | 25.0% |
| !! | GAATATGTTCAGTTCATTTT+TGG | - | chr1_1:5959068-5959087 | Msa0003440:intron | 25.0% |
| !!! | GGATTTAGTGTGTTTTTATA+CGG | - | chr1_1:5959151-5959170 | Msa0003440:intron | 25.0% |
| ! | TAATCTCACAAGCATTATAA+CGG | + | chr1_1:5959233-5959252 | None:intergenic | 25.0% |
| ! | TGAGATTAAATGTCTTAGTT+CGG | - | chr1_1:5959245-5959264 | Msa0003440:intron | 25.0% |
| ! | TTATTGACCTCGATTTAAAA+CGG | - | chr1_1:5959296-5959315 | Msa0003440:intron | 25.0% |
| !! | TTTAAAACGGTTGAATAAAG+TGG | - | chr1_1:5959309-5959328 | Msa0003440:intron | 25.0% |
| ! | TATCACAAAAACATTCTGTA+AGG | + | chr1_1:5959465-5959484 | None:intergenic | 25.0% |
| !! | GTATACAGAAAATTGATAGT+TGG | + | chr1_1:5959558-5959577 | None:intergenic | 25.0% |
| !!! | CTTTCTAAAACATTTACTGT+TGG | - | chr1_1:5959706-5959725 | Msa0003440:CDS | 25.0% |
| AAGAACAAAATTGTTGTGGT+TGG | + | chr1_1:5955941-5955960 | None:intergenic | 30.0% | |
| TTCACATGAAAATCTTTGTC+AGG | + | chr1_1:5956027-5956046 | None:intergenic | 30.0% | |
| ! | GAAGCACTTGTGATATTATT+TGG | - | chr1_1:5956419-5956438 | Msa0003440:intron | 30.0% |
| TATCAATTCTGTCAGTAGTT+AGG | - | chr1_1:5956531-5956550 | Msa0003440:intron | 30.0% | |
| TTGAGTAACTAACTCCTAAT+TGG | + | chr1_1:5956570-5956589 | None:intergenic | 30.0% | |
| TTAGGAGTTAGTTACTCAAT+TGG | - | chr1_1:5956571-5956590 | Msa0003440:intron | 30.0% | |
| GTTAGAGATTTAGACTCAAA+GGG | + | chr1_1:5956653-5956672 | None:intergenic | 30.0% | |
| TGTTAGAGATTTAGACTCAA+AGG | + | chr1_1:5956654-5956673 | None:intergenic | 30.0% | |
| TTTCATAAGTCTCAGTTACT+GGG | + | chr1_1:5956702-5956721 | None:intergenic | 30.0% | |
| ! | TTTTCATAAGTCTCAGTTAC+TGG | + | chr1_1:5956703-5956722 | None:intergenic | 30.0% |
| CAATCTAAGTAAGACACATT+TGG | + | chr1_1:5956868-5956887 | None:intergenic | 30.0% | |
| CAAATGTGTCTTACTTAGAT+TGG | - | chr1_1:5956866-5956885 | Msa0003440:CDS | 30.0% | |
| ACTTATTTCCTCTTCAGATA+AGG | - | chr1_1:5957000-5957019 | Msa0003440:CDS | 30.0% | |
| TTGAAAACCCATTAACCAAA+TGG | - | chr1_1:5957180-5957199 | Msa0003440:intron | 30.0% | |
| AAAACAGCCATTTGGTTAAT+GGG | + | chr1_1:5957190-5957209 | None:intergenic | 30.0% | |
| AAAAACAGCCATTTGGTTAA+TGG | + | chr1_1:5957191-5957210 | None:intergenic | 30.0% | |
| TGATGATAAAAACAGCCATT+TGG | + | chr1_1:5957198-5957217 | None:intergenic | 30.0% | |
| ! | TACTTTCTAGACTCACATTT+TGG | - | chr1_1:5957369-5957388 | Msa0003440:CDS | 30.0% |
| !! | TGATTTTAGTCTTCTCATGT+CGG | - | chr1_1:5957483-5957502 | Msa0003440:intron | 30.0% |
| TAATTCATGATTTCTGAGCA+AGG | + | chr1_1:5957642-5957661 | None:intergenic | 30.0% | |
| TCATACTAGGTAAATACTAC+CGG | + | chr1_1:5957818-5957837 | None:intergenic | 30.0% | |
| ! | TGATCAGTTTAGTTCATACT+AGG | + | chr1_1:5957831-5957850 | None:intergenic | 30.0% |
| TTTATCTCAACTGATAAGCT+GGG | + | chr1_1:5957952-5957971 | None:intergenic | 30.0% | |
| TATCAGTTGAGATAAAGGTA+TGG | - | chr1_1:5957956-5957975 | Msa0003440:intron | 30.0% | |
| !! | TTAGGCTACATTTTGATGAA+TGG | + | chr1_1:5958120-5958139 | None:intergenic | 30.0% |
| ATCAAAATGTAGCCTAAATG+CGG | - | chr1_1:5958123-5958142 | Msa0003440:CDS | 30.0% | |
| TCAGATATGAATCTTGAAGT+AGG | + | chr1_1:5958156-5958175 | None:intergenic | 30.0% | |
| TGCTAAGACAAATGCAATAT+AGG | + | chr1_1:5958283-5958302 | None:intergenic | 30.0% | |
| AGACAAATGATAAAATGCTC+AGG | + | chr1_1:5958311-5958330 | None:intergenic | 30.0% | |
| !! | GCTTAGTTCTAGAAAAATGA+CGG | + | chr1_1:5958361-5958380 | None:intergenic | 30.0% |
| ! | GGCTTTATGAATTCTTTCTT+TGG | + | chr1_1:5958459-5958478 | None:intergenic | 30.0% |
| AGTAGTAAAGAGATCTTTGA+TGG | + | chr1_1:5958480-5958499 | None:intergenic | 30.0% | |
| !! | AATACACGGAAATTGTTTTG+AGG | + | chr1_1:5958503-5958522 | None:intergenic | 30.0% |
| TTAAATGGTTCTCTCATACT+CGG | - | chr1_1:5958524-5958543 | Msa0003440:CDS | 30.0% | |
| TAAATAAGTTCTCTGTGCAT+TGG | + | chr1_1:5958640-5958659 | None:intergenic | 30.0% | |
| CTTGACAATATTGACATAGA+AGG | - | chr1_1:5958722-5958741 | Msa0003440:intron | 30.0% | |
| !! | TGATGATATGTTTTAGACCA+AGG | - | chr1_1:5958912-5958931 | Msa0003440:intron | 30.0% |
| !! | TAAGCAAGCCTTTGATTTTA+AGG | - | chr1_1:5958985-5959004 | Msa0003440:intron | 30.0% |
| TCTGCTTACCTTAAAATCAA+AGG | + | chr1_1:5958996-5959015 | None:intergenic | 30.0% | |
| !!! | TGGTTTAAATTTTTGGTGTC+TGG | - | chr1_1:5959035-5959054 | Msa0003440:intron | 30.0% |
| ATGAACTGAACATATTCGTA+TGG | + | chr1_1:5959065-5959084 | None:intergenic | 30.0% | |
| !!! | TCAGTTCATTTTTGGTTAGT+AGG | - | chr1_1:5959076-5959095 | Msa0003440:intron | 30.0% |
| CCAAGTGTTAAATTGATTGA+AGG | + | chr1_1:5959133-5959152 | None:intergenic | 30.0% | |
| CCTTCAATCAATTTAACACT+TGG | - | chr1_1:5959130-5959149 | Msa0003440:intron | 30.0% | |
| !! | GTTGCTACTTGATTTGTATT+AGG | - | chr1_1:5959267-5959286 | Msa0003440:intron | 30.0% |
| !! | TATTCAACCGTTTTAAATCG+AGG | + | chr1_1:5959306-5959325 | None:intergenic | 30.0% |
| CTATCTTCTTATCTAACTTG+TGG | + | chr1_1:5959342-5959361 | None:intergenic | 30.0% | |
| TTACAAAGAGATGAGCAAAA+TGG | - | chr1_1:5959369-5959388 | Msa0003440:intron | 30.0% | |
| AAAATGGATCATGGAAGAAA+TGG | - | chr1_1:5959385-5959404 | Msa0003440:intron | 30.0% | |
| AAATGGAGATGCAAACTTAT+AGG | - | chr1_1:5959402-5959421 | Msa0003440:intron | 30.0% | |
| AATGGAGATGCAAACTTATA+GGG | - | chr1_1:5959403-5959422 | Msa0003440:intron | 30.0% | |
| GTGAAGCAAAATATTTATGC+AGG | + | chr1_1:5959511-5959530 | None:intergenic | 30.0% | |
| ! | ATGAGGAAACAAATAATGGA+AGG | + | chr1_1:5959652-5959671 | None:intergenic | 30.0% |
| !! | CAGGTGTTGTTTGATTAAGA+TGG | + | chr1_1:5955886-5955905 | None:intergenic | 35.0% |
| ! | GTTCTTATGTTTGAAACGCA+TGG | - | chr1_1:5955955-5955974 | Msa0003440:three_prime_UTR | 35.0% |
| AATCTTGTTCTCTCTTACAC+TGG | - | chr1_1:5956117-5956136 | Msa0003440:three_prime_UTR | 35.0% | |
| AGAACTTACATAAGAAGGAG+AGG | + | chr1_1:5956145-5956164 | None:intergenic | 35.0% | |
| ATTAATTCCGTAAGCTCTTC+AGG | - | chr1_1:5956489-5956508 | Msa0003440:intron | 35.0% | |
| TTAATTCCGTAAGCTCTTCA+GGG | - | chr1_1:5956490-5956509 | Msa0003440:intron | 35.0% | |
| TCTGAAGAGGAAATAAGTTC+AGG | + | chr1_1:5956998-5957017 | None:intergenic | 35.0% | |
| AGCAATTTCCTTATCTGAAG+AGG | + | chr1_1:5957011-5957030 | None:intergenic | 35.0% | |
| TCTTCAGATAAGGAAATTGC+TGG | - | chr1_1:5957010-5957029 | Msa0003440:CDS | 35.0% | |
| CTTCAGATAAGGAAATTGCT+GGG | - | chr1_1:5957011-5957030 | Msa0003440:CDS | 35.0% | |
| ! | ACATATTTGGAACCAAGCAA+AGG | + | chr1_1:5957064-5957083 | None:intergenic | 35.0% |
| GTTCCAAATATGTTGATGCT+GGG | - | chr1_1:5957071-5957090 | Msa0003440:CDS | 35.0% | |
| TTCCAAATATGTTGATGCTG+GGG | - | chr1_1:5957072-5957091 | Msa0003440:CDS | 35.0% | |
| AGAACAGGAGAAGAATGAAA+CGG | + | chr1_1:5957108-5957127 | None:intergenic | 35.0% | |
| ! | TTGGTGATTTGTATTCCTCA+AGG | + | chr1_1:5957232-5957251 | None:intergenic | 35.0% |
| AGTAAAGATGTTGCATGAGT+AGG | - | chr1_1:5957306-5957325 | Msa0003440:intron | 35.0% | |
| !! | AGTCTAGAAAGTACCAAAAC+AGG | + | chr1_1:5957362-5957381 | None:intergenic | 35.0% |
| CAATGTAATTCAAGCAGTGT+AGG | + | chr1_1:5957702-5957721 | None:intergenic | 35.0% | |
| !!! | TTCATATTTTAACCAACGGG+AGG | + | chr1_1:5957725-5957744 | None:intergenic | 35.0% |
| ! | CTGACTAGTTAGTGTATGTA+TGG | + | chr1_1:5957872-5957891 | None:intergenic | 35.0% |
| TAAGCTTCGTGTTTCATTTC+AGG | - | chr1_1:5957910-5957929 | Msa0003440:intron | 35.0% | |
| ! | TGTTTCATTTCAGGTAGTCA+AGG | - | chr1_1:5957919-5957938 | Msa0003440:intron | 35.0% |
| TTATCTCAACTGATAAGCTG+GGG | + | chr1_1:5957951-5957970 | None:intergenic | 35.0% | |
| CTTTATCTCAACTGATAAGC+TGG | + | chr1_1:5957953-5957972 | None:intergenic | 35.0% | |
| CAGCTTATCAGTTGAGATAA+AGG | - | chr1_1:5957951-5957970 | Msa0003440:intron | 35.0% | |
| TATGTCTTCAGATTTCAGAG+CGG | - | chr1_1:5958399-5958418 | Msa0003440:intron | 35.0% | |
| ! | TGAAAGTACAGATGCATCTA+TGG | - | chr1_1:5958565-5958584 | Msa0003440:CDS | 35.0% |
| GGAAAGCTTGAGAATTGTAA+AGG | - | chr1_1:5958853-5958872 | Msa0003440:intron | 35.0% | |
| !! | ATGTTTTAGACCAAGGAAAG+AGG | - | chr1_1:5958919-5958938 | Msa0003440:intron | 35.0% |
| CTCAAGATATACAGTATCGT+AGG | + | chr1_1:5958960-5958979 | None:intergenic | 35.0% | |
| !! | TTTTGGTTAGTAGGTCTTGA+CGG | - | chr1_1:5959085-5959104 | Msa0003440:intron | 35.0% |
| !! | TTAAGATGGACTGCATGCAA+TGG | + | chr1_1:5955872-5955891 | None:intergenic | 40.0% |
| TGAAGAAGATGCAGCTCATT+GGG | - | chr1_1:5956071-5956090 | Msa0003440:three_prime_UTR | 40.0% | |
| CATTGGGTTTATAGAGGTGA+AGG | - | chr1_1:5956087-5956106 | Msa0003440:three_prime_UTR | 40.0% | |
| GCAAGCACGTTAGATCTATT+TGG | - | chr1_1:5956367-5956386 | Msa0003440:intron | 40.0% | |
| GGTTCCAAATATGTTGATGC+TGG | - | chr1_1:5957070-5957089 | Msa0003440:CDS | 40.0% | |
| TACCCCAGCATCAACATATT+TGG | + | chr1_1:5957077-5957096 | None:intergenic | 40.0% | |
| ! | CTCAGACATTGATCTAGAAC+AGG | + | chr1_1:5957123-5957142 | None:intergenic | 40.0% |
| !! | GAAAGTACCAAAACAGGTAC+AGG | + | chr1_1:5957356-5957375 | None:intergenic | 40.0% |
| GATCATTCAATCTTCCCTCA+AGG | - | chr1_1:5957505-5957524 | Msa0003440:intron | 40.0% | |
| TTCAATCTTCCCTCAAGGTA+TGG | - | chr1_1:5957510-5957529 | Msa0003440:intron | 40.0% | |
| GTCTCAAAACCATACCTTGA+GGG | + | chr1_1:5957522-5957541 | None:intergenic | 40.0% | |
| TGTCTCAAAACCATACCTTG+AGG | + | chr1_1:5957523-5957542 | None:intergenic | 40.0% | |
| TTCATTCTGAATGCTGTCTC+CGG | - | chr1_1:5957796-5957815 | Msa0003440:intron | 40.0% | |
| AAATCAAGCCCAAGACAAAG+AGG | + | chr1_1:5958081-5958100 | None:intergenic | 40.0% | |
| GTAGGAAGAAATCCGCATTT+AGG | + | chr1_1:5958138-5958157 | None:intergenic | 40.0% | |
| CTGAAGAAACTGCTATCAAG+AGG | - | chr1_1:5958172-5958191 | Msa0003440:CDS | 40.0% | |
| AAGAAACTGCTATCAAGAGG+AGG | - | chr1_1:5958175-5958194 | Msa0003440:CDS | 40.0% | |
| !! | CAAGCTCTGAAATTGCAACA+TGG | - | chr1_1:5958219-5958238 | Msa0003440:intron | 40.0% |
| ! | TCTGAAATTGCAACATGGAG+AGG | - | chr1_1:5958224-5958243 | Msa0003440:intron | 40.0% |
| ACTTGAAGATGAACTTCAGC+CGG | - | chr1_1:5958595-5958614 | Msa0003440:CDS | 40.0% | |
| ! | AAGGACTCCTGATTTTTGCA+CGG | + | chr1_1:5958678-5958697 | None:intergenic | 40.0% |
| CATTACTTCTCAACAGAGCA+TGG | - | chr1_1:5958766-5958785 | Msa0003440:intron | 40.0% | |
| ! | TTTTAGACCAAGGAAAGAGG+AGG | - | chr1_1:5958922-5958941 | Msa0003440:intron | 40.0% |
| TTTAGACCAAGGAAAGAGGA+GGG | - | chr1_1:5958923-5958942 | Msa0003440:intron | 40.0% | |
| GAGATGAGCAAAATGGATCA+TGG | - | chr1_1:5959376-5959395 | Msa0003440:intron | 40.0% | |
| AAGTCTCAGTATGCAACTTC+AGG | + | chr1_1:5959430-5959449 | None:intergenic | 40.0% | |
| TGGTATTCTGCATGATGCAT+TGG | - | chr1_1:5959726-5959745 | Msa0003440:CDS | 40.0% | |
| TATTCTGCATGATGCATTGG+AGG | - | chr1_1:5959729-5959748 | Msa0003440:CDS | 40.0% | |
| ATTCTGCATGATGCATTGGA+GGG | - | chr1_1:5959730-5959749 | Msa0003440:CDS | 40.0% | |
| CAAACAACACCTGATCACAG+AGG | - | chr1_1:5955893-5955912 | Msa0003440:three_prime_UTR | 45.0% | |
| CTGAAGAAGATGCAGCTCAT+TGG | - | chr1_1:5956070-5956089 | Msa0003440:three_prime_UTR | 45.0% | |
| GCAGCTCATTGGGTTTATAG+AGG | - | chr1_1:5956081-5956100 | Msa0003440:three_prime_UTR | 45.0% | |
| AAGCAACCCTGAAGAGCTTA+CGG | + | chr1_1:5956499-5956518 | None:intergenic | 45.0% | |
| TTACTGGGATCATCAGGAGA+GGG | + | chr1_1:5956687-5956706 | None:intergenic | 45.0% | |
| TCTCAGTTACTGGGATCATC+AGG | + | chr1_1:5956693-5956712 | None:intergenic | 45.0% | |
| TTCATGTGGAGTCAGAGCTA+TGG | + | chr1_1:5956954-5956973 | None:intergenic | 45.0% | |
| !! | TAGCTCTGACTCCACATGAA+CGG | - | chr1_1:5956954-5956973 | Msa0003440:CDS | 45.0% |
| CATGTCATGAAGCCTTTGCT+TGG | - | chr1_1:5957049-5957068 | Msa0003440:CDS | 45.0% | |
| ATCACTCTGTGCTTACCTTG+AGG | - | chr1_1:5957214-5957233 | Msa0003440:intron | 45.0% | |
| ! | TCTCTGACCTGTACCTGTTT+TGG | - | chr1_1:5957346-5957365 | Msa0003440:intron | 45.0% |
| !! | GACTCACATTTTGGTGACCA+AGG | - | chr1_1:5957378-5957397 | Msa0003440:CDS | 45.0% |
| GACCAAGGAATTCCTTGAGA+CGG | - | chr1_1:5957393-5957412 | Msa0003440:CDS | 45.0% | |
| AACCGTCTCAAGGAATTCCT+TGG | + | chr1_1:5957398-5957417 | None:intergenic | 45.0% | |
| CATTCTTCTCAACCGTCTCA+AGG | + | chr1_1:5957408-5957427 | None:intergenic | 45.0% | |
| !! | TGGGCGAGTTGATGTTTCAA+GGG | - | chr1_1:5957447-5957466 | Msa0003440:intron | 45.0% |
| TGAATTACATTGCCTCCCGT+TGG | - | chr1_1:5957710-5957729 | Msa0003440:intron | 45.0% | |
| AGACAAAGAGGAAGAGGGAA+GGG | + | chr1_1:5958069-5958088 | None:intergenic | 45.0% | |
| AAGACAAAGAGGAAGAGGGA+AGG | + | chr1_1:5958070-5958089 | None:intergenic | 45.0% | |
| TTCCCTCTTCCTCTTTGTCT+TGG | - | chr1_1:5958069-5958088 | Msa0003440:CDS | 45.0% | |
| TCCCTCTTCCTCTTTGTCTT+GGG | - | chr1_1:5958070-5958089 | Msa0003440:CDS | 45.0% | |
| ATCCAGAGAACAGATCGAGT+GGG | + | chr1_1:5958436-5958455 | None:intergenic | 45.0% | |
| AATGGTTCTCTCATACTCGG+AGG | - | chr1_1:5958527-5958546 | Msa0003440:CDS | 45.0% | |
| ATGGTTCTCTCATACTCGGA+GGG | - | chr1_1:5958528-5958547 | Msa0003440:CDS | 45.0% | |
| CCATCATCAGCTTGAATGAC+CGG | + | chr1_1:5958617-5958636 | None:intergenic | 45.0% | |
| ACTGAAGCCGTGCAAAAATC+AGG | - | chr1_1:5958668-5958687 | Msa0003440:CDS | 45.0% | |
| AGTCCTTGATAAGCTCCTTG+AGG | - | chr1_1:5958691-5958710 | Msa0003440:intron | 45.0% | |
| GAACCTCAAGGAGCTTATCA+AGG | + | chr1_1:5958697-5958716 | None:intergenic | 45.0% | |
| TGTCAAGCTTCTGAACCTCA+AGG | + | chr1_1:5958709-5958728 | None:intergenic | 45.0% | |
| CAGTGATGCAGAATGCAAAG+AGG | + | chr1_1:5958831-5958850 | None:intergenic | 45.0% | |
| CTCTTTGCATTCTGCATCAC+TGG | - | chr1_1:5958829-5958848 | Msa0003440:intron | 45.0% | |
| TTTGCATTCTGCATCACTGG+AGG | - | chr1_1:5958832-5958851 | Msa0003440:intron | 45.0% | |
| ! | CTTTTGCAGTTGCTGCTATC+AGG | + | chr1_1:5958883-5958902 | None:intergenic | 45.0% |
| CGTTGTGTTCCTCTGTGATC+AGG | + | chr1_1:5955905-5955924 | None:intergenic | 50.0% | |
| TCACAGAGGAACACAACGCA+AGG | - | chr1_1:5955907-5955926 | Msa0003440:three_prime_UTR | 50.0% | |
| GTTACTGGGATCATCAGGAG+AGG | + | chr1_1:5956688-5956707 | None:intergenic | 50.0% | |
| CATTCGCAAGTCTCCAAGGA+AGG | - | chr1_1:5956901-5956920 | Msa0003440:CDS | 50.0% | |
| !! | TGCAACGCTGATTCCTTCCT+TGG | + | chr1_1:5956917-5956936 | None:intergenic | 50.0% |
| AGGAAGGAATCAGCGTTGCA+AGG | - | chr1_1:5956917-5956936 | Msa0003440:CDS | 50.0% | |
| AATCAGCGTTGCAAGGAGTG+AGG | - | chr1_1:5956924-5956943 | Msa0003440:CDS | 50.0% | |
| TTCCAGATGAGCCGTTCATG+TGG | + | chr1_1:5956968-5956987 | None:intergenic | 50.0% | |
| AAACATCAACTCGCCCAGCA+GGG | + | chr1_1:5957444-5957463 | None:intergenic | 50.0% | |
| !! | CTGGGCGAGTTGATGTTTCA+AGG | - | chr1_1:5957446-5957465 | Msa0003440:intron | 50.0% |
| GCCCAAGACAAAGAGGAAGA+GGG | + | chr1_1:5958074-5958093 | None:intergenic | 50.0% | |
| AGCCCAAGACAAAGAGGAAG+AGG | + | chr1_1:5958075-5958094 | None:intergenic | 50.0% | |
| AACCCACTCGATCTGTTCTC+TGG | - | chr1_1:5958431-5958450 | Msa0003440:intron | 50.0% | |
| GATCCAGAGAACAGATCGAG+TGG | + | chr1_1:5958437-5958456 | None:intergenic | 50.0% | |
| CCGGTCATTCAAGCTGATGA+TGG | - | chr1_1:5958614-5958633 | Msa0003440:CDS | 50.0% | |
| GAGCATGGCGCGTAAAGAAT+TGG | - | chr1_1:5958781-5958800 | Msa0003440:intron | 50.0% | |
| CTACCCTCCTCACATGCTAT+TGG | - | chr1_1:5959530-5959549 | Msa0003440:intron | 50.0% | |
| GGACCAATAGCATGTGAGGA+GGG | + | chr1_1:5959536-5959555 | None:intergenic | 50.0% | |
| GTTGGGACCAATAGCATGTG+AGG | + | chr1_1:5959540-5959559 | None:intergenic | 50.0% | |
| TGGGATCATCAGGAGAGGGA+AGG | + | chr1_1:5956683-5956702 | None:intergenic | 55.0% | |
| TGCGCATTCGCAAGTCTCCA+AGG | - | chr1_1:5956897-5956916 | Msa0003440:CDS | 55.0% | |
| CTCCACATGAACGGCTCATC+TGG | - | chr1_1:5956963-5956982 | Msa0003440:CDS | 55.0% | |
| TTGCTAGTCAACGCCCTGCT+GGG | - | chr1_1:5957428-5957447 | Msa0003440:CDS | 55.0% | |
| GAAACATCAACTCGCCCAGC+AGG | + | chr1_1:5957445-5957464 | None:intergenic | 55.0% | |
| TCTCTCATACTCGGAGGGCT+TGG | - | chr1_1:5958533-5958552 | Msa0003440:CDS | 55.0% | |
| CCAGAACCCTCCTCTTTCCT+TGG | + | chr1_1:5958932-5958951 | None:intergenic | 55.0% | |
| CCAAGGAAAGAGGAGGGTTC+TGG | - | chr1_1:5958929-5958948 | Msa0003440:intron | 55.0% | |
| GGGACCAATAGCATGTGAGG+AGG | + | chr1_1:5959537-5959556 | None:intergenic | 55.0% | |
| CTGCATGATGCATTGGAGGG+TGG | - | chr1_1:5959733-5959752 | Msa0003440:CDS | 55.0% | |
| GTTGCTAGTCAACGCCCTGC+TGG | - | chr1_1:5957427-5957446 | Msa0003440:CDS | 60.0% | |
| CTCATACTCGGAGGGCTTGG+AGG | - | chr1_1:5958536-5958555 | Msa0003440:CDS | 60.0% | |
| ATACTCGGAGGGCTTGGAGG+TGG | - | chr1_1:5958539-5958558 | Msa0003440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5955824 | 5959769 | 5955824 | ID=Msa0003440;Name=Msa0003440 |
| chr1_1 | mRNA | 5955824 | 5959769 | 5955824 | ID=Msa0003440-mRNA-1;Parent=Msa0003440;Name=Msa0003440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=12|0.71|0.75|1|1|1|8|346|478 |
| chr1_1 | exon | 5955824 | 5956304 | 5955824 | ID=Msa0003440-mRNA-1:exon:1906;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5956587 | 5957183 | 5956587 | ID=Msa0003440-mRNA-1:exon:1905;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5957348 | 5957458 | 5957348 | ID=Msa0003440-mRNA-1:exon:1904;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5957621 | 5957661 | 5957621 | ID=Msa0003440-mRNA-1:exon:1903;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5958067 | 5958214 | 5958067 | ID=Msa0003440-mRNA-1:exon:1902;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5958500 | 5958709 | 5958500 | ID=Msa0003440-mRNA-1:exon:1901;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5959438 | 5959539 | 5959438 | ID=Msa0003440-mRNA-1:exon:1900;Parent=Msa0003440-mRNA-1 |
| chr1_1 | exon | 5959665 | 5959769 | 5959665 | ID=Msa0003440-mRNA-1:exon:1899;Parent=Msa0003440-mRNA-1 |
| chr1_1 | five_prime_UTR | 5959758 | 5959769 | 5959758 | ID=Msa0003440-mRNA-1:five_prime_utr;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5959665 | 5959757 | 5959665 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5959438 | 5959539 | 5959438 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5958500 | 5958709 | 5958500 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5958067 | 5958214 | 5958067 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5957621 | 5957661 | 5957621 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5957348 | 5957458 | 5957348 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5956587 | 5957183 | 5956587 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | CDS | 5956170 | 5956304 | 5956170 | ID=Msa0003440-mRNA-1:cds;Parent=Msa0003440-mRNA-1 |
| chr1_1 | three_prime_UTR | 5955824 | 5956169 | 5955824 | ID=Msa0003440-mRNA-1:three_prime_utr;Parent=Msa0003440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
