Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147370 | XP_003589504.2 | 96.942 | 327 | 4 | 2 | 1 | 325 | 1 | 323 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147370 | sp|A0A1P8B554|THLP1_ARATH | 59.608 | 255 | 91 | 4 | 3 | 251 | 9 | 257 | 1.07e-96 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147370 | A0A396JHC1 | 96.942 | 327 | 4 | 2 | 1 | 325 | 1 | 323 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003940 | Msa0147370 | 0.884566 | 1.718901e-71 | -8.615850e-47 |
| Msa0057900 | Msa0147370 | 0.891287 | 4.558365e-74 | -8.615850e-47 |
| Msa0102590 | Msa0147370 | 0.889434 | 2.431258e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147370 | MtrunA17_Chr1g0156711 | 96.942 | 327 | 4 | 2 | 1 | 325 | 1 | 323 | 0.0 | 640 |
| Msa0147370 | MtrunA17_Chr3g0142781 | 75.000 | 316 | 73 | 3 | 13 | 325 | 12 | 324 | 6.98e-171 | 477 |
| Msa0147370 | MtrunA17_Chr8g0352471 | 60.135 | 296 | 103 | 7 | 5 | 298 | 6 | 288 | 3.31e-120 | 348 |
| Msa0147370 | MtrunA17_Chr5g0405581 | 69.262 | 244 | 71 | 3 | 15 | 255 | 14 | 256 | 1.23e-118 | 343 |
| Msa0147370 | MtrunA17_Chr8g0371781 | 70.042 | 237 | 64 | 3 | 20 | 251 | 21 | 255 | 1.09e-115 | 336 |
| Msa0147370 | MtrunA17_Chr4g0037351 | 52.648 | 321 | 138 | 5 | 6 | 324 | 3 | 311 | 3.97e-114 | 333 |
| Msa0147370 | MtrunA17_Chr8g0357311 | 63.985 | 261 | 87 | 5 | 1 | 260 | 1 | 255 | 1.42e-113 | 329 |
| Msa0147370 | MtrunA17_Chr4g0037331 | 64.876 | 242 | 74 | 5 | 8 | 249 | 9 | 239 | 3.16e-104 | 308 |
| Msa0147370 | MtrunA17_Chr5g0405611 | 51.420 | 317 | 139 | 7 | 3 | 318 | 74 | 376 | 3.44e-99 | 297 |
| Msa0147370 | MtrunA17_Chr8g0371771 | 61.134 | 247 | 86 | 5 | 3 | 249 | 7 | 243 | 6.05e-99 | 294 |
| Msa0147370 | MtrunA17_Chr7g0265011 | 55.230 | 239 | 104 | 3 | 11 | 249 | 51 | 286 | 7.58e-95 | 283 |
| Msa0147370 | MtrunA17_Chr1g0180221 | 56.175 | 251 | 102 | 5 | 1 | 251 | 41 | 283 | 2.07e-87 | 264 |
| Msa0147370 | MtrunA17_Chr1g0180121 | 52.263 | 243 | 113 | 3 | 7 | 249 | 2 | 241 | 1.60e-86 | 260 |
| Msa0147370 | MtrunA17_Chr2g0312181 | 53.333 | 240 | 105 | 4 | 13 | 249 | 7 | 242 | 3.98e-86 | 259 |
| Msa0147370 | MtrunA17_Chr1g0179891 | 54.472 | 246 | 103 | 4 | 6 | 251 | 2 | 238 | 5.69e-86 | 258 |
| Msa0147370 | MtrunA17_Chr8g0351851 | 54.098 | 244 | 102 | 6 | 6 | 249 | 4 | 237 | 9.18e-86 | 258 |
| Msa0147370 | MtrunA17_Chr1g0180231 | 56.017 | 241 | 97 | 4 | 11 | 251 | 12 | 243 | 1.10e-85 | 258 |
| Msa0147370 | MtrunA17_Chr1g0179871 | 56.017 | 241 | 97 | 4 | 11 | 251 | 12 | 243 | 1.10e-85 | 258 |
| Msa0147370 | MtrunA17_Chr2g0311561 | 52.564 | 234 | 107 | 3 | 17 | 249 | 1 | 231 | 7.64e-85 | 257 |
| Msa0147370 | MtrunA17_Chr2g0311521 | 53.488 | 258 | 109 | 7 | 11 | 263 | 7 | 258 | 8.51e-85 | 275 |
| Msa0147370 | MtrunA17_Chr5g0428801 | 50.775 | 258 | 119 | 5 | 9 | 263 | 8 | 260 | 2.97e-84 | 256 |
| Msa0147370 | MtrunA17_Chr1g0180161 | 54.357 | 241 | 101 | 4 | 11 | 251 | 12 | 243 | 3.98e-84 | 254 |
| Msa0147370 | MtrunA17_Chr1g0179851 | 57.658 | 222 | 91 | 3 | 30 | 251 | 22 | 240 | 3.17e-83 | 251 |
| Msa0147370 | MtrunA17_Chr6g0482741 | 50.833 | 240 | 113 | 4 | 10 | 249 | 5 | 239 | 3.45e-80 | 244 |
| Msa0147370 | MtrunA17_Chr8g0392961 | 52.917 | 240 | 108 | 4 | 10 | 249 | 10 | 244 | 1.09e-79 | 243 |
| Msa0147370 | MtrunA17_Chr1g0154591 | 57.080 | 226 | 89 | 6 | 26 | 249 | 12 | 231 | 2.75e-79 | 241 |
| Msa0147370 | MtrunA17_Chr2g0311551 | 52.653 | 245 | 108 | 6 | 21 | 263 | 17 | 255 | 3.11e-79 | 260 |
| Msa0147370 | MtrunA17_Chr3g0141341 | 53.478 | 230 | 99 | 7 | 27 | 255 | 12 | 234 | 3.38e-73 | 226 |
| Msa0147370 | MtrunA17_Chr5g0424221 | 48.413 | 252 | 116 | 9 | 1 | 250 | 1 | 240 | 1.94e-68 | 215 |
| Msa0147370 | MtrunA17_Chr3g0112091 | 49.367 | 237 | 109 | 8 | 19 | 249 | 5 | 236 | 2.40e-67 | 211 |
| Msa0147370 | MtrunA17_Chr6g0452331 | 43.548 | 248 | 132 | 8 | 5 | 249 | 9 | 251 | 5.94e-64 | 203 |
| Msa0147370 | MtrunA17_Chr7g0239131 | 46.531 | 245 | 125 | 6 | 9 | 252 | 5 | 244 | 7.94e-64 | 202 |
| Msa0147370 | MtrunA17_Chr4g0031221 | 44.444 | 225 | 117 | 7 | 29 | 249 | 31 | 251 | 5.46e-61 | 195 |
| Msa0147370 | MtrunA17_Chr5g0406771 | 54.237 | 177 | 76 | 3 | 15 | 188 | 1 | 175 | 1.43e-60 | 191 |
| Msa0147370 | MtrunA17_Chr2g0311531 | 46.725 | 229 | 92 | 8 | 22 | 249 | 22 | 221 | 7.04e-59 | 189 |
| Msa0147370 | MtrunA17_Chr2g0311501 | 48.108 | 185 | 87 | 7 | 69 | 249 | 2 | 181 | 3.28e-53 | 173 |
| Msa0147370 | MtrunA17_Chr5g0397831 | 40.964 | 249 | 118 | 8 | 8 | 249 | 9 | 235 | 7.50e-50 | 166 |
| Msa0147370 | MtrunA17_Chr5g0397821 | 40.000 | 225 | 111 | 7 | 26 | 249 | 23 | 224 | 1.58e-46 | 157 |
| Msa0147370 | MtrunA17_Chr8g0386341 | 39.918 | 243 | 118 | 9 | 10 | 249 | 30 | 247 | 4.37e-46 | 156 |
| Msa0147370 | MtrunA17_Chr2g0309611 | 31.048 | 248 | 155 | 6 | 10 | 248 | 9 | 249 | 6.00e-38 | 135 |
| Msa0147370 | MtrunA17_Chr1g0179911 | 32.000 | 250 | 149 | 7 | 7 | 251 | 6 | 239 | 4.48e-32 | 120 |
| Msa0147370 | MtrunA17_Chr8g0386351 | 43.262 | 141 | 68 | 6 | 5 | 142 | 40 | 171 | 2.49e-27 | 106 |
| Msa0147370 | MtrunA17_Chr1g0180181 | 58.333 | 84 | 34 | 1 | 168 | 251 | 18 | 100 | 2.93e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147370 | AT1G75800.1 | 63.609 | 327 | 95 | 4 | 13 | 321 | 9 | 329 | 1.68e-147 | 418 |
| Msa0147370 | AT1G20030.2 | 66.557 | 305 | 96 | 3 | 23 | 325 | 16 | 316 | 1.25e-143 | 408 |
| Msa0147370 | AT1G20030.1 | 66.337 | 303 | 96 | 3 | 25 | 325 | 1 | 299 | 2.20e-142 | 404 |
| Msa0147370 | AT4G36010.1 | 63.736 | 273 | 91 | 4 | 23 | 289 | 19 | 289 | 6.93e-118 | 342 |
| Msa0147370 | AT4G36010.2 | 63.736 | 273 | 91 | 4 | 23 | 289 | 19 | 289 | 6.93e-118 | 342 |
| Msa0147370 | AT4G38670.3 | 61.847 | 249 | 94 | 1 | 10 | 257 | 6 | 254 | 4.62e-111 | 324 |
| Msa0147370 | AT4G38670.1 | 61.847 | 249 | 94 | 1 | 10 | 257 | 6 | 254 | 4.62e-111 | 324 |
| Msa0147370 | AT4G38670.2 | 63.025 | 238 | 87 | 1 | 21 | 257 | 1 | 238 | 1.18e-108 | 317 |
| Msa0147370 | AT2G17860.1 | 62.857 | 245 | 86 | 4 | 13 | 253 | 9 | 252 | 5.67e-107 | 313 |
| Msa0147370 | AT4G38660.1 | 62.109 | 256 | 88 | 5 | 17 | 272 | 20 | 266 | 5.08e-102 | 303 |
| Msa0147370 | AT4G38660.2 | 62.302 | 252 | 86 | 5 | 21 | 272 | 2 | 244 | 5.84e-101 | 300 |
| Msa0147370 | AT4G24180.1 | 56.631 | 279 | 109 | 4 | 3 | 275 | 9 | 281 | 6.58e-99 | 294 |
| Msa0147370 | AT4G24180.6 | 59.608 | 255 | 91 | 4 | 3 | 251 | 9 | 257 | 1.09e-97 | 289 |
| Msa0147370 | AT4G24180.2 | 57.196 | 271 | 104 | 4 | 11 | 275 | 12 | 276 | 1.14e-97 | 291 |
| Msa0147370 | AT5G38280.1 | 54.373 | 263 | 113 | 4 | 13 | 269 | 11 | 272 | 4.79e-97 | 301 |
| Msa0147370 | AT5G38280.2 | 54.373 | 263 | 113 | 4 | 13 | 269 | 11 | 272 | 7.01e-97 | 300 |
| Msa0147370 | AT4G24180.5 | 60.324 | 247 | 86 | 4 | 11 | 251 | 12 | 252 | 1.97e-96 | 286 |
| Msa0147370 | AT4G24180.3 | 59.307 | 231 | 83 | 3 | 10 | 234 | 16 | 241 | 8.69e-89 | 269 |
| Msa0147370 | AT4G24180.4 | 58.696 | 230 | 84 | 3 | 11 | 234 | 12 | 236 | 9.95e-88 | 266 |
| Msa0147370 | AT1G19320.1 | 57.430 | 249 | 90 | 9 | 8 | 250 | 9 | 247 | 1.63e-86 | 260 |
| Msa0147370 | AT1G75030.1 | 58.009 | 231 | 89 | 7 | 26 | 255 | 23 | 246 | 2.99e-83 | 252 |
| Msa0147370 | AT1G75050.1 | 56.540 | 237 | 98 | 5 | 13 | 249 | 11 | 242 | 3.60e-83 | 252 |
| Msa0147370 | AT1G75040.1 | 55.738 | 244 | 100 | 6 | 6 | 249 | 3 | 238 | 5.62e-83 | 251 |
| Msa0147370 | AT5G24620.1 | 51.639 | 244 | 111 | 5 | 11 | 249 | 9 | 250 | 7.99e-80 | 249 |
| Msa0147370 | AT1G18250.1 | 54.464 | 224 | 97 | 4 | 26 | 249 | 20 | 238 | 8.19e-80 | 243 |
| Msa0147370 | AT1G18250.2 | 54.464 | 224 | 97 | 4 | 26 | 249 | 21 | 239 | 9.03e-80 | 243 |
| Msa0147370 | AT5G24620.4 | 48.669 | 263 | 117 | 6 | 3 | 249 | 45 | 305 | 1.04e-79 | 251 |
| Msa0147370 | AT5G24620.3 | 48.669 | 263 | 117 | 6 | 3 | 249 | 66 | 326 | 1.11e-79 | 251 |
| Msa0147370 | AT1G73620.1 | 55.357 | 224 | 95 | 4 | 26 | 249 | 41 | 259 | 1.15e-79 | 243 |
| Msa0147370 | AT1G77700.3 | 51.304 | 230 | 92 | 9 | 26 | 251 | 60 | 273 | 2.94e-70 | 222 |
| Msa0147370 | AT1G77700.2 | 51.327 | 226 | 98 | 8 | 26 | 251 | 60 | 273 | 1.08e-69 | 220 |
| Msa0147370 | AT1G77700.1 | 51.327 | 226 | 98 | 8 | 26 | 251 | 88 | 301 | 1.31e-69 | 221 |
| Msa0147370 | AT2G28790.2 | 47.107 | 242 | 120 | 7 | 12 | 249 | 36 | 273 | 6.69e-67 | 211 |
| Msa0147370 | AT2G28790.1 | 47.107 | 242 | 120 | 7 | 12 | 249 | 11 | 248 | 8.47e-67 | 210 |
| Msa0147370 | AT1G70250.1 | 47.083 | 240 | 114 | 6 | 25 | 258 | 143 | 375 | 2.47e-65 | 220 |
| Msa0147370 | AT4G36000.2 | 62.644 | 174 | 53 | 5 | 103 | 274 | 1 | 164 | 9.57e-65 | 203 |
| Msa0147370 | AT4G36000.1 | 62.644 | 174 | 53 | 5 | 103 | 274 | 1 | 164 | 9.57e-65 | 203 |
| Msa0147370 | AT4G18253.1 | 43.443 | 244 | 128 | 4 | 13 | 255 | 9 | 243 | 1.31e-64 | 204 |
| Msa0147370 | AT5G40020.1 | 46.256 | 227 | 117 | 5 | 26 | 251 | 27 | 249 | 3.57e-63 | 201 |
| Msa0147370 | AT4G18250.1 | 44.030 | 268 | 139 | 6 | 13 | 277 | 42 | 301 | 4.90e-62 | 209 |
| Msa0147370 | AT5G02140.1 | 44.177 | 249 | 133 | 6 | 14 | 260 | 7 | 251 | 2.58e-61 | 197 |
| Msa0147370 | AT5G02140.2 | 45.798 | 238 | 123 | 6 | 14 | 249 | 7 | 240 | 1.63e-60 | 194 |
| Msa0147370 | AT4G11650.1 | 39.506 | 243 | 122 | 8 | 8 | 249 | 4 | 222 | 2.35e-49 | 165 |
| Msa0147370 | AT5G24620.2 | 56.667 | 120 | 47 | 3 | 134 | 249 | 15 | 133 | 1.47e-37 | 136 |
| Msa0147370 | AT2G24810.1 | 62.195 | 82 | 26 | 3 | 170 | 250 | 116 | 193 | 8.96e-27 | 104 |
Find 135 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATGGGGCGGCCGTTTC+TGG | -0.083846 | 1_4:+7351371 | Msa0147370:CDS |
| CTAATGAGATCTTCATTCTT+AGG | 0.152586 | 1_4:+7352970 | Msa0147370:exon |
| GACCACACATTCACGTTTAT+TGG | 0.178738 | 1_4:+7353032 | Msa0147370:three_prime_UTR |
| GCACTTCATCTATCAATTTC+AGG | 0.196637 | 1_4:+7351076 | Msa0147370:CDS |
| GCCAGAGCATTCAACCTTTC+CGG | 0.211647 | 1_4:-7351458 | None:intergenic |
| GAGGGGTGGGATTCATTTAT+TGG | 0.238808 | 1_4:+7353391 | Msa0147370:three_prime_UTR |
| CTCATGGGGCGGCCGTTTCT+GGG | 0.253028 | 1_4:+7351372 | Msa0147370:CDS |
| TGGTTGGAGAATGTAATATT+TGG | 0.270579 | 1_4:+7353411 | Msa0147370:three_prime_UTR |
| TTAAGTATGGCTCATGGATT+TGG | 0.313740 | 1_4:+7353119 | Msa0147370:three_prime_UTR |
| CCAGGGATTCTTTCAAATGC+TGG | 0.316773 | 1_4:+7351280 | Msa0147370:CDS |
| ATTTATACATGTAGCAATAT+AGG | 0.317837 | 1_4:+7353252 | Msa0147370:three_prime_UTR |
| TGTAATATTTGGCTACAATA+AGG | 0.334675 | 1_4:+7353422 | Msa0147370:three_prime_UTR |
| TTTAAAGAGGGTCCCACATT+TGG | 0.343784 | 1_4:-7353056 | None:intergenic |
| AACAATTGAGAATAAGTAGA+AGG | 0.345262 | 1_4:-7351787 | None:intergenic |
| CAGGGATTCTTTCAAATGCT+GGG | 0.347178 | 1_4:+7351281 | Msa0147370:CDS |
| GAGTCATGTCCTAGTCAATA+AGG | 0.357507 | 1_4:-7353142 | None:intergenic |
| ATATAGGTGACGATGTAGTT+AGG | 0.361985 | 1_4:+7353268 | Msa0147370:three_prime_UTR |
| TATTGCTGCAGCGGCGCGTA+TGG | 0.373787 | 1_4:+7351745 | Msa0147370:CDS |
| CGGTGGTGGTTTCACCGGTT+TGG | 0.379773 | 1_4:-7351336 | None:intergenic |
| TCATATCTTACATATACATA+TGG | 0.390366 | 1_4:+7351012 | Msa0147370:exon |
| TAATGAGATCTTCATTCTTA+GGG | 0.392642 | 1_4:+7352971 | Msa0147370:exon |
| TTCGATGTTAGTCTTGTTGA+CGG | 0.393312 | 1_4:+7351547 | Msa0147370:CDS |
| TGCACGCAAAAGTTTGTGAT+TGG | 0.405228 | 1_4:-7352904 | None:intergenic |
| GTCGCCCCTCAGGGCGGCTC+TGG | 0.409338 | 1_4:+7351589 | Msa0147370:CDS |
| TCTCAACGGCGCGTGTCCTT+CGG | 0.414761 | 1_4:+7351645 | Msa0147370:CDS |
| TTAGCATCACTATGGTCCTT+TGG | 0.416286 | 1_4:+7352930 | Msa0147370:CDS |
| GTGAATTCGGCTAAAGTTGC+TGG | 0.417144 | 1_4:-7351496 | None:intergenic |
| GCCTATGCTAGTCGCCCCTC+AGG | 0.418663 | 1_4:+7351579 | Msa0147370:CDS |
| GGAAAATTCTCATGTGTAAC+CGG | 0.421032 | 1_4:+7351424 | Msa0147370:CDS |
| CGTCGCCGCACCAGCCTCAT+GGG | 0.425999 | 1_4:+7351357 | Msa0147370:CDS |
| TCCGGAAAGGTTGAATGCTC+TGG | 0.437194 | 1_4:+7351457 | Msa0147370:CDS |
| TGTATAAATAAATAAATGTA+TGG | 0.451975 | 1_4:-7353238 | None:intergenic |
| CCGTCGCCGCACCAGCCTCA+TGG | 0.453243 | 1_4:+7351356 | Msa0147370:CDS |
| ACGTGAATGTGTGGTCATAT+TGG | 0.457357 | 1_4:-7353025 | None:intergenic |
| AACCATGTGTGAGTTAAGTA+TGG | 0.464049 | 1_4:+7353106 | Msa0147370:three_prime_UTR |
| GGCTGGTGCGGCGACGGTGG+TGG | 0.464602 | 1_4:-7351350 | None:intergenic |
| AGAGCCGTCTAATGTGAATT+CGG | 0.464663 | 1_4:-7351509 | None:intergenic |
| CCATGAGGCTGGTGCGGCGA+CGG | 0.466543 | 1_4:-7351356 | None:intergenic |
| GTGCATTATTAGCATCACTA+TGG | 0.467599 | 1_4:+7352922 | Msa0147370:CDS |
| TTGAATTATTTGTATTGAGA+GGG | 0.469911 | 1_4:+7353373 | Msa0147370:three_prime_UTR |
| GTAACCGGCGATTGTGGCTC+CGG | 0.470556 | 1_4:+7351439 | Msa0147370:CDS |
| GTAGAAGGTTTGCAAGTGTC+TGG | 0.470850 | 1_4:-7351772 | None:intergenic |
| CACGTTTATTGGTCCAAATG+TGG | 0.476217 | 1_4:+7353043 | Msa0147370:three_prime_UTR |
| ACAGGCTTTGTTCTCCAAAC+CGG | 0.477539 | 1_4:+7351322 | Msa0147370:CDS |
| TGCCTAGTGATCTATAACAT+GGG | 0.480574 | 1_4:-7353342 | None:intergenic |
| TTATGAGATTTGATGAAATG+AGG | 0.483107 | 1_4:-7350930 | None:intergenic |
| AAACGGCCGCCCCATGAGGC+TGG | 0.484136 | 1_4:-7351367 | None:intergenic |
| GGCGACGGTGGTGGTTTCAC+CGG | 0.489298 | 1_4:-7351341 | None:intergenic |
| GGTGGGATTCATTTATTGGT+TGG | 0.492822 | 1_4:+7353395 | Msa0147370:three_prime_UTR |
| CCAGCATTTGAAAGAATCCC+TGG | 0.493036 | 1_4:-7351280 | None:intergenic |
| TGTGACTACACAGTGTGGCC+AGG | 0.496467 | 1_4:+7351262 | Msa0147370:CDS |
| TGGATTTGGCCTTATTGACT+AGG | 0.503947 | 1_4:+7353133 | Msa0147370:three_prime_UTR |
| TATAGGTGACGATGTAGTTA+GGG | 0.505321 | 1_4:+7353269 | Msa0147370:three_prime_UTR |
| AAAGAGTTCTGCCCCAGAAA+CGG | 0.509995 | 1_4:-7351384 | None:intergenic |
| TCATGGGGCGGCCGTTTCTG+GGG | 0.511165 | 1_4:+7351373 | Msa0147370:CDS |
| ATAAATGTATGGTGGTAGCT+TGG | 0.512014 | 1_4:-7353227 | None:intergenic |
| ATTGAATTATTTGTATTGAG+AGG | 0.513278 | 1_4:+7353372 | Msa0147370:three_prime_UTR |
| GAAGATCTCATTAGAAGAGT+TGG | 0.513485 | 1_4:-7352961 | None:intergenic |
| GCATCACTATGGTCCTTTGG+CGG | 0.514552 | 1_4:+7352933 | Msa0147370:CDS |
| GACAAAATGTCAAGGGTTGT+AGG | 0.515639 | 1_4:-7353181 | None:intergenic |
| TTATTTGTATTGAGAGGGGT+GGG | 0.516735 | 1_4:+7353378 | Msa0147370:three_prime_UTR |
| AAAGTAACTAACCTTGTGGT+TGG | 0.518082 | 1_4:-7351913 | None:intergenic |
| AAGCCTGTGGTTGGAAGTGT+TGG | 0.519230 | 1_4:-7351307 | None:intergenic |
| TATCGCCAGAGCCGCCCTGA+GGG | 0.521997 | 1_4:-7351594 | None:intergenic |
| CCCTGAGGGGCGACTAGCAT+AGG | 0.525025 | 1_4:-7351580 | None:intergenic |
| TCATGTGTAACCGGCGATTG+TGG | 0.527231 | 1_4:+7351433 | Msa0147370:CDS |
| GAATTCACATTAGACGGCTC+TGG | 0.528881 | 1_4:+7351511 | Msa0147370:CDS |
| TTCACATTAGACGGCTCTGG+TGG | 0.532251 | 1_4:+7351514 | Msa0147370:CDS |
| ATTGCTGCAGCGGCGCGTAT+GGG | 0.534091 | 1_4:+7351746 | Msa0147370:CDS |
| GGCGATAATTGCACTACCAC+GGG | 0.537099 | 1_4:+7351610 | Msa0147370:CDS |
| TCCCCATGTTATAGATCACT+AGG | 0.540797 | 1_4:+7353340 | Msa0147370:three_prime_UTR |
| TTCAGTCAAAAGGCAACACA+AGG | 0.545590 | 1_4:+7352755 | Msa0147370:intron |
| GCCGCCCCATGAGGCTGGTG+CGG | 0.547166 | 1_4:-7351362 | None:intergenic |
| ATAGCTATATGCACGTGGGC+AGG | 0.548259 | 1_4:-7351818 | None:intergenic |
| ACGTTTATTGGTCCAAATGT+GGG | 0.552340 | 1_4:+7353044 | Msa0147370:three_prime_UTR |
| CTTAGAGTGATGAGTGTGGA+TGG | 0.554333 | 1_4:+7351670 | Msa0147370:CDS |
| TGGAGAACAAAGCCTGTGGT+TGG | 0.555388 | 1_4:-7351316 | None:intergenic |
| CCTATGCTAGTCGCCCCTCA+GGG | 0.555587 | 1_4:+7351580 | Msa0147370:CDS |
| TGAGGCTGGTGCGGCGACGG+TGG | 0.559267 | 1_4:-7351353 | None:intergenic |
| TGAATTATTTGTATTGAGAG+GGG | 0.559611 | 1_4:+7353374 | Msa0147370:three_prime_UTR |
| AGGGATTCTTTCAAATGCTG+GGG | 0.560190 | 1_4:+7351282 | Msa0147370:CDS |
| GCGCCGCTGCAGCAATACTC+CGG | 0.562265 | 1_4:-7351739 | None:intergenic |
| CTTTCCGGAGCCACAATCGC+CGG | 0.563498 | 1_4:-7351443 | None:intergenic |
| CGGCGATTGTGGCTCCGGAA+AGG | 0.566510 | 1_4:+7351444 | Msa0147370:CDS |
| AAGTTTGTGATTGGAGCACA+TGG | 0.568630 | 1_4:-7352895 | None:intergenic |
| GTGACTACACAGTGTGGCCA+GGG | 0.569936 | 1_4:+7351263 | Msa0147370:CDS |
| GCCGCACCAGCCTCATGGGG+CGG | 0.572230 | 1_4:+7351361 | Msa0147370:CDS |
| ATTATTTGTATTGAGAGGGG+TGG | 0.572608 | 1_4:+7353377 | Msa0147370:three_prime_UTR |
| GTGGTCATATTGGATGATTA+TGG | 0.572627 | 1_4:-7353015 | None:intergenic |
| GTCCCAACACTTCCAACCAC+AGG | 0.572652 | 1_4:+7351304 | Msa0147370:CDS |
| AAGGTTGAATGCTCTGGCAA+CGG | 0.576244 | 1_4:+7351463 | Msa0147370:CDS |
| TTAGCCGAATTCACATTAGA+CGG | 0.576825 | 1_4:+7351505 | Msa0147370:CDS |
| ATGCCTAGTGATCTATAACA+TGG | 0.590564 | 1_4:-7353343 | None:intergenic |
| CATGACTCATTTCAAAGGAA+AGG | 0.591738 | 1_4:+7353157 | Msa0147370:three_prime_UTR |
| CTTTGCTCCCAAGACACCGA+TGG | 0.591877 | 1_4:+7351403 | Msa0147370:CDS |
| ATGAGTGTGGATGGGAAAGA+CGG | 0.592613 | 1_4:+7351679 | Msa0147370:CDS |
| TGGCGATAATTGCACTACCA+CGG | 0.593427 | 1_4:+7351609 | Msa0147370:CDS |
| GACAATACAATGGTGTATGA+AGG | 0.596541 | 1_4:+7352833 | Msa0147370:CDS |
| CCAGAAACGGCCGCCCCATG+AGG | 0.596649 | 1_4:-7351371 | None:intergenic |
| TAGGACATGACTCATTTCAA+AGG | 0.597781 | 1_4:+7353152 | Msa0147370:three_prime_UTR |
| GGCTAAAGTTGCTGGCGGTG+TGG | 0.598687 | 1_4:-7351488 | None:intergenic |
| ATAAATAAATAAATGTATGG+TGG | 0.599349 | 1_4:-7353235 | None:intergenic |
| TCACCGGAGTATTGCTGCAG+CGG | 0.602026 | 1_4:+7351736 | Msa0147370:CDS |
| AGAGTTGGCACAACCGCCAA+AGG | 0.605702 | 1_4:-7352946 | None:intergenic |
| ATTTGCACAAGTGAAAGTGC+TGG | 0.609107 | 1_4:-7351857 | None:intergenic |
| TTGGAGCACATGGGTGCACA+TGG | 0.612628 | 1_4:-7352885 | None:intergenic |
| TTATCGCCAGAGCCGCCCTG+AGG | 0.617214 | 1_4:-7351595 | None:intergenic |
| AGCCTGTGGTTGGAAGTGTT+GGG | 0.621679 | 1_4:-7351306 | None:intergenic |
| TGTGAGTTAAGTATGGCTCA+TGG | 0.623058 | 1_4:+7353113 | Msa0147370:three_prime_UTR |
| TAGCTTGGCCTCCTGCACAA+AGG | 0.623226 | 1_4:-7353212 | None:intergenic |
| TCACATTAGACGGCTCTGGT+GGG | 0.623574 | 1_4:+7351515 | Msa0147370:CDS |
| ATCGCCAGAGCCGCCCTGAG+GGG | 0.629555 | 1_4:-7351593 | None:intergenic |
| GTCATTGCTAAGCTGAGGTG+AGG | 0.630131 | 1_4:-7352813 | None:intergenic |
| TTAGAGTGATGAGTGTGGAT+GGG | 0.630518 | 1_4:+7351671 | Msa0147370:CDS |
| GCCTAGTGATCTATAACATG+GGG | 0.634628 | 1_4:-7353341 | None:intergenic |
| TTTGTTCTTCTCCAACCACA+AGG | 0.638050 | 1_4:+7351902 | Msa0147370:CDS |
| CTCATCACTCTAAGCTCCGA+AGG | 0.638536 | 1_4:-7351661 | None:intergenic |
| GTCGCCGCACCAGCCTCATG+GGG | 0.644478 | 1_4:+7351358 | Msa0147370:CDS |
| AAATTGATAGTACTTGGTGG+TGG | 0.656416 | 1_4:-7351039 | None:intergenic |
| TAAGCATAGCTATATGCACG+TGG | 0.665332 | 1_4:-7351823 | None:intergenic |
| GACCAATAAACGTGAATGTG+TGG | 0.671423 | 1_4:-7353034 | None:intergenic |
| GGATGTATCAGTGATCTCAA+CGG | 0.673930 | 1_4:+7351631 | Msa0147370:CDS |
| GCTTAGCAATGACAATACAA+TGG | 0.678768 | 1_4:+7352823 | Msa0147370:CDS |
| GAGATCACTGATACATCCCG+TGG | 0.679790 | 1_4:-7351626 | None:intergenic |
| ATGCTAGTCGCCCCTCAGGG+CGG | 0.689357 | 1_4:+7351583 | Msa0147370:CDS |
| AGCCATACTTAACTCACACA+TGG | 0.689446 | 1_4:-7353108 | None:intergenic |
| GTATTGTCATTGCTAAGCTG+AGG | 0.695826 | 1_4:-7352818 | None:intergenic |
| GGTTTGGAGAACAAAGCCTG+TGG | 0.705280 | 1_4:-7351320 | None:intergenic |
| AATACAATGGTGTATGAAGG+TGG | 0.707551 | 1_4:+7352836 | Msa0147370:CDS |
| TCAGTCAAAAGGCAACACAA+GGG | 0.710852 | 1_4:+7352756 | Msa0147370:intron |
| AATTCGGCTAAAGTTGCTGG+CGG | 0.718669 | 1_4:-7351493 | None:intergenic |
| AAGCATAGCTATATGCACGT+GGG | 0.721806 | 1_4:-7351822 | None:intergenic |
| GGAGCTTAGAGTGATGAGTG+TGG | 0.722376 | 1_4:+7351666 | Msa0147370:CDS |
| ACAAATGTGACTACACAGTG+TGG | 0.729139 | 1_4:+7351257 | Msa0147370:CDS |
| AGTTTGTGATTGGAGCACAT+GGG | 0.786907 | 1_4:-7352894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAATAAATAAATGTA+TGG | - | chr1_4:7353241-7353260 | None:intergenic | 10.0% |
| !!! | ATTGTCAAAATTTTTTTTAA+CGG | + | chr1_4:7353469-7353488 | Msa0147370:three_prime_UTR | 10.0% |
| !!! | AACTATTAAATGTTTGTTTT+TGG | - | chr1_4:7351131-7351150 | None:intergenic | 15.0% |
| !! | TAAGATTGATTATATTCAAT+AGG | - | chr1_4:7351989-7352008 | None:intergenic | 15.0% |
| !! | ATAAATAAATAAATGTATGG+TGG | - | chr1_4:7353238-7353257 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTTTGTATAAAAG+TGG | - | chr1_4:7350962-7350981 | None:intergenic | 20.0% |
| !! | AAGATATGAGAAAAAGAAAT+GGG | - | chr1_4:7351001-7351020 | None:intergenic | 20.0% |
| !! | TAAGATATGAGAAAAAGAAA+TGG | - | chr1_4:7351002-7351021 | None:intergenic | 20.0% |
| !! | TCATATCTTACATATACATA+TGG | + | chr1_4:7351012-7351031 | Msa0147370:exon | 20.0% |
| !!! | ATGAAAAAATTGATAGTACT+TGG | - | chr1_4:7351048-7351067 | None:intergenic | 20.0% |
| !!! | TTTTTACGGTTATTATTTTG+AGG | - | chr1_4:7351951-7351970 | None:intergenic | 20.0% |
| !! | TTGAATATAATCAATCTTAC+CGG | + | chr1_4:7351990-7352009 | Msa0147370:intron | 20.0% |
| !! | TCATATTAGTTAAGATTTAC+CGG | - | chr1_4:7352012-7352031 | None:intergenic | 20.0% |
| !! | GACAAAATTCATTAATCATT+TGG | - | chr1_4:7352129-7352148 | None:intergenic | 20.0% |
| !! | AATAAATTGTTCAATGAACT+CGG | + | chr1_4:7352153-7352172 | Msa0147370:intron | 20.0% |
| !!! | AGAACAATTTTTCTATGAAT+CGG | + | chr1_4:7352251-7352270 | Msa0147370:intron | 20.0% |
| !!! | ATATAATTTGGTTCTAGATA+TGG | - | chr1_4:7352505-7352524 | None:intergenic | 20.0% |
| !! | GTACATCAATCAATATAATT+TGG | - | chr1_4:7352517-7352536 | None:intergenic | 20.0% |
| !!! | TTATATTGATTGATGTACAT+TGG | + | chr1_4:7352519-7352538 | Msa0147370:intron | 20.0% |
| !!! | AGTCAAACTAATTTTAAAGA+GGG | - | chr1_4:7353071-7353090 | None:intergenic | 20.0% |
| !!! | AAGTCAAACTAATTTTAAAG+AGG | - | chr1_4:7353072-7353091 | None:intergenic | 20.0% |
| !! | ATTTATACATGTAGCAATAT+AGG | + | chr1_4:7353252-7353271 | Msa0147370:three_prime_UTR | 20.0% |
| !! | ATTGAATTATTTGTATTGAG+AGG | + | chr1_4:7353372-7353391 | Msa0147370:three_prime_UTR | 20.0% |
| !! | TTGAATTATTTGTATTGAGA+GGG | + | chr1_4:7353373-7353392 | Msa0147370:three_prime_UTR | 20.0% |
| ! | TTATGAGATTTGATGAAATG+AGG | - | chr1_4:7350933-7350952 | None:intergenic | 25.0% |
| !! | AAAAAATTGATAGTACTTGG+TGG | - | chr1_4:7351045-7351064 | None:intergenic | 25.0% |
| ! | AACAATTGAGAATAAGTAGA+AGG | - | chr1_4:7351790-7351809 | None:intergenic | 25.0% |
| ! | AAATAAAGTAACTAACCTTG+TGG | - | chr1_4:7351920-7351939 | None:intergenic | 25.0% |
| ! | ATAAATTGTTCAATGAACTC+GGG | + | chr1_4:7352154-7352173 | Msa0147370:intron | 25.0% |
| ! | TTCAATAGAAATTGATGCAA+AGG | + | chr1_4:7352352-7352371 | Msa0147370:intron | 25.0% |
| ! | TCAATAGAAATTGATGCAAA+GGG | + | chr1_4:7352353-7352372 | Msa0147370:intron | 25.0% |
| !! | ATAAAGTTCATCACACTTTT+TGG | - | chr1_4:7352628-7352647 | None:intergenic | 25.0% |
| !! | TCACAATGTAATTTTCCTAA+CGG | - | chr1_4:7352653-7352672 | None:intergenic | 25.0% |
| ! | TAATGAGATCTTCATTCTTA+GGG | + | chr1_4:7352971-7352990 | Msa0147370:exon | 25.0% |
| !!! | TTTTTAGGACAAAATGTCAA+GGG | - | chr1_4:7353191-7353210 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGACAAAATGTCA+AGG | - | chr1_4:7353192-7353211 | None:intergenic | 25.0% |
| ! | TGAATTATTTGTATTGAGAG+GGG | + | chr1_4:7353374-7353393 | Msa0147370:three_prime_UTR | 25.0% |
| ! | TGTAATATTTGGCTACAATA+AGG | + | chr1_4:7353422-7353441 | Msa0147370:three_prime_UTR | 25.0% |
| TTTGTGAATATGTCATATGC+AGG | + | chr1_4:7351205-7351224 | Msa0147370:intron | 30.0% | |
| ! | TACACATGAGAATTTTCCAT+CGG | - | chr1_4:7351422-7351441 | None:intergenic | 30.0% |
| !!! | GCACAACGGTAAATTTTTTA+CGG | - | chr1_4:7351965-7351984 | None:intergenic | 30.0% |
| TATATTCAATAGGTGCACAA+CGG | - | chr1_4:7351979-7351998 | None:intergenic | 30.0% | |
| ! | GAGTTTGATTCGATTAGATT+GGG | + | chr1_4:7352062-7352081 | Msa0147370:intron | 30.0% |
| ! | CTGTAAGGTAATTTAGAGTT+CGG | - | chr1_4:7352230-7352249 | None:intergenic | 30.0% |
| AGAAAAATTGTTCTGCTGTA+AGG | - | chr1_4:7352245-7352264 | None:intergenic | 30.0% | |
| ! | ACAATTTTTCTATGAATCGG+AGG | + | chr1_4:7352254-7352273 | Msa0147370:intron | 30.0% |
| ! | CAATTTTTCTATGAATCGGA+GGG | + | chr1_4:7352255-7352274 | Msa0147370:intron | 30.0% |
| !! | ACATTCATAACTATTTCTGC+CGG | - | chr1_4:7352429-7352448 | None:intergenic | 30.0% |
| !! | CACATTGGATATTTTGGATT+TGG | - | chr1_4:7352454-7352473 | None:intergenic | 30.0% |
| TCCAAAATATCCAATGTGAT+AGG | + | chr1_4:7352456-7352475 | Msa0147370:intron | 30.0% | |
| ! | ACCTATCACATTGGATATTT+TGG | - | chr1_4:7352460-7352479 | None:intergenic | 30.0% |
| TACATTGGATTCGCAAAATA+TGG | + | chr1_4:7352534-7352553 | Msa0147370:intron | 30.0% | |
| ACATTGGATTCGCAAAATAT+GGG | + | chr1_4:7352535-7352554 | Msa0147370:intron | 30.0% | |
| TTATCGTTACACAACACTAT+TGG | + | chr1_4:7352576-7352595 | Msa0147370:intron | 30.0% | |
| ! | CTGTTGTATTTTCAGTCAAA+AGG | + | chr1_4:7352745-7352764 | Msa0147370:intron | 30.0% |
| CTAATGAGATCTTCATTCTT+AGG | + | chr1_4:7352970-7352989 | Msa0147370:exon | 30.0% | |
| TGGTTGGAGAATGTAATATT+TGG | + | chr1_4:7353411-7353430 | Msa0147370:three_prime_UTR | 30.0% | |
| ! | AAATTGATAGTACTTGGTGG+TGG | - | chr1_4:7351042-7351061 | None:intergenic | 35.0% |
| GCACTTCATCTATCAATTTC+AGG | + | chr1_4:7351076-7351095 | Msa0147370:CDS | 35.0% | |
| GGAAAATTCTCATGTGTAAC+CGG | + | chr1_4:7351424-7351443 | Msa0147370:CDS | 35.0% | |
| TTAGCCGAATTCACATTAGA+CGG | + | chr1_4:7351505-7351524 | Msa0147370:CDS | 35.0% | |
| !! | TTCGATGTTAGTCTTGTTGA+CGG | + | chr1_4:7351547-7351566 | Msa0147370:CDS | 35.0% |
| !! | ATGCGAAGCTTTTAATTCAC+CGG | + | chr1_4:7351720-7351739 | Msa0147370:CDS | 35.0% |
| AAAGTAACTAACCTTGTGGT+TGG | - | chr1_4:7351916-7351935 | None:intergenic | 35.0% | |
| !! | TCCGAACTATTGGTTCATAA+GGG | - | chr1_4:7352044-7352063 | None:intergenic | 35.0% |
| ! | GGAGTTTGATTCGATTAGAT+TGG | + | chr1_4:7352061-7352080 | Msa0147370:intron | 35.0% |
| !! | TACTTTTTAGCCACCATGAT+TGG | + | chr1_4:7352317-7352336 | Msa0147370:intron | 35.0% |
| AATTGATTACCCACCAATCA+TGG | - | chr1_4:7352333-7352352 | None:intergenic | 35.0% | |
| ATTGCTTGCAATTGCAAACA+TGG | - | chr1_4:7352382-7352401 | None:intergenic | 35.0% | |
| TAGTAGGTGAAGCAACATAA+TGG | + | chr1_4:7352403-7352422 | Msa0147370:intron | 35.0% | |
| TGATGAACTTTATGACCGTT+AGG | + | chr1_4:7352635-7352654 | Msa0147370:intron | 35.0% | |
| GCTTAGCAATGACAATACAA+TGG | + | chr1_4:7352823-7352842 | Msa0147370:CDS | 35.0% | |
| GACAATACAATGGTGTATGA+AGG | + | chr1_4:7352833-7352852 | Msa0147370:CDS | 35.0% | |
| AATACAATGGTGTATGAAGG+TGG | + | chr1_4:7352836-7352855 | Msa0147370:CDS | 35.0% | |
| GTGCATTATTAGCATCACTA+TGG | + | chr1_4:7352922-7352941 | Msa0147370:CDS | 35.0% | |
| GAAGATCTCATTAGAAGAGT+TGG | - | chr1_4:7352964-7352983 | None:intergenic | 35.0% | |
| GTGGTCATATTGGATGATTA+TGG | - | chr1_4:7353018-7353037 | None:intergenic | 35.0% | |
| ACGTTTATTGGTCCAAATGT+GGG | + | chr1_4:7353044-7353063 | Msa0147370:three_prime_UTR | 35.0% | |
| AACCATGTGTGAGTTAAGTA+TGG | + | chr1_4:7353106-7353125 | Msa0147370:three_prime_UTR | 35.0% | |
| TTAAGTATGGCTCATGGATT+TGG | + | chr1_4:7353119-7353138 | Msa0147370:three_prime_UTR | 35.0% | |
| TAGGACATGACTCATTTCAA+AGG | + | chr1_4:7353152-7353171 | Msa0147370:three_prime_UTR | 35.0% | |
| CATGACTCATTTCAAAGGAA+AGG | + | chr1_4:7353157-7353176 | Msa0147370:three_prime_UTR | 35.0% | |
| ATAAATGTATGGTGGTAGCT+TGG | - | chr1_4:7353230-7353249 | None:intergenic | 35.0% | |
| ATATAGGTGACGATGTAGTT+AGG | + | chr1_4:7353268-7353287 | Msa0147370:three_prime_UTR | 35.0% | |
| TATAGGTGACGATGTAGTTA+GGG | + | chr1_4:7353269-7353288 | Msa0147370:three_prime_UTR | 35.0% | |
| TGCCTAGTGATCTATAACAT+GGG | - | chr1_4:7353345-7353364 | None:intergenic | 35.0% | |
| ATGCCTAGTGATCTATAACA+TGG | - | chr1_4:7353346-7353365 | None:intergenic | 35.0% | |
| ATTATTTGTATTGAGAGGGG+TGG | + | chr1_4:7353377-7353396 | Msa0147370:three_prime_UTR | 35.0% | |
| TTATTTGTATTGAGAGGGGT+GGG | + | chr1_4:7353378-7353397 | Msa0147370:three_prime_UTR | 35.0% | |
| ACAAATGTGACTACACAGTG+TGG | + | chr1_4:7351257-7351276 | Msa0147370:CDS | 40.0% | |
| CAGGGATTCTTTCAAATGCT+GGG | + | chr1_4:7351281-7351300 | Msa0147370:CDS | 40.0% | |
| AGGGATTCTTTCAAATGCTG+GGG | + | chr1_4:7351282-7351301 | Msa0147370:CDS | 40.0% | |
| !! | GAATTTTCCATCGGTGTCTT+GGG | - | chr1_4:7351413-7351432 | None:intergenic | 40.0% |
| !! | AGAATTTTCCATCGGTGTCT+TGG | - | chr1_4:7351414-7351433 | None:intergenic | 40.0% |
| AGAGCCGTCTAATGTGAATT+CGG | - | chr1_4:7351512-7351531 | None:intergenic | 40.0% | |
| GGATGTATCAGTGATCTCAA+CGG | + | chr1_4:7351631-7351650 | Msa0147370:CDS | 40.0% | |
| TTAGAGTGATGAGTGTGGAT+GGG | + | chr1_4:7351671-7351690 | Msa0147370:CDS | 40.0% | |
| AAGCATAGCTATATGCACGT+GGG | - | chr1_4:7351825-7351844 | None:intergenic | 40.0% | |
| TAAGCATAGCTATATGCACG+TGG | - | chr1_4:7351826-7351845 | None:intergenic | 40.0% | |
| ! | ATTTGCACAAGTGAAAGTGC+TGG | - | chr1_4:7351860-7351879 | None:intergenic | 40.0% |
| TTTGTTCTTCTCCAACCACA+AGG | + | chr1_4:7351902-7351921 | Msa0147370:CDS | 40.0% | |
| !! | CCGAACTATTGGTTCATAAG+GGG | - | chr1_4:7352043-7352062 | None:intergenic | 40.0% |
| CCCCTTATGAACCAATAGTT+CGG | + | chr1_4:7352040-7352059 | Msa0147370:intron | 40.0% | |
| !! | CTCCGAACTATTGGTTCATA+AGG | - | chr1_4:7352045-7352064 | None:intergenic | 40.0% |
| CGAATCAAACTCCGAACTAT+TGG | - | chr1_4:7352054-7352073 | None:intergenic | 40.0% | |
| ATGAACTCGGGTTCGATTAA+TGG | + | chr1_4:7352166-7352185 | Msa0147370:intron | 40.0% | |
| TGAACTCGGGTTCGATTAAT+GGG | + | chr1_4:7352167-7352186 | Msa0147370:intron | 40.0% | |
| GGTCGCGAGGTAAATTATAA+CGG | - | chr1_4:7352209-7352228 | None:intergenic | 40.0% | |
| !! | TTTTTAGCCACCATGATTGG+TGG | + | chr1_4:7352320-7352339 | Msa0147370:intron | 40.0% |
| ! | TTTTAGCCACCATGATTGGT+GGG | + | chr1_4:7352321-7352340 | Msa0147370:intron | 40.0% |
| GCAATTGCAAGCAATCTAGT+AGG | + | chr1_4:7352387-7352406 | Msa0147370:intron | 40.0% | |
| TTGGATTCGCAAAATATGGG+TGG | + | chr1_4:7352538-7352557 | Msa0147370:intron | 40.0% | |
| TGTTGTGTAACGATAACCCT+TGG | - | chr1_4:7352572-7352591 | None:intergenic | 40.0% | |
| TTCAGTCAAAAGGCAACACA+AGG | + | chr1_4:7352755-7352774 | Msa0147370:intron | 40.0% | |
| TCAGTCAAAAGGCAACACAA+GGG | + | chr1_4:7352756-7352775 | Msa0147370:intron | 40.0% | |
| GTATTGTCATTGCTAAGCTG+AGG | - | chr1_4:7352821-7352840 | None:intergenic | 40.0% | |
| AGTTTGTGATTGGAGCACAT+GGG | - | chr1_4:7352897-7352916 | None:intergenic | 40.0% | |
| AAGTTTGTGATTGGAGCACA+TGG | - | chr1_4:7352898-7352917 | None:intergenic | 40.0% | |
| TGCACGCAAAAGTTTGTGAT+TGG | - | chr1_4:7352907-7352926 | None:intergenic | 40.0% | |
| TTAGCATCACTATGGTCCTT+TGG | + | chr1_4:7352930-7352949 | Msa0147370:CDS | 40.0% | |
| !! | GGGCATTTTCTAGTGTAGTT+AGG | + | chr1_4:7352991-7353010 | Msa0147370:three_prime_UTR | 40.0% |
| ACGTGAATGTGTGGTCATAT+TGG | - | chr1_4:7353028-7353047 | None:intergenic | 40.0% | |
| GACCACACATTCACGTTTAT+TGG | + | chr1_4:7353032-7353051 | Msa0147370:three_prime_UTR | 40.0% | |
| GACCAATAAACGTGAATGTG+TGG | - | chr1_4:7353037-7353056 | None:intergenic | 40.0% | |
| CACGTTTATTGGTCCAAATG+TGG | + | chr1_4:7353043-7353062 | Msa0147370:three_prime_UTR | 40.0% | |
| TTTAAAGAGGGTCCCACATT+TGG | - | chr1_4:7353059-7353078 | None:intergenic | 40.0% | |
| AGCCATACTTAACTCACACA+TGG | - | chr1_4:7353111-7353130 | None:intergenic | 40.0% | |
| TGTGAGTTAAGTATGGCTCA+TGG | + | chr1_4:7353113-7353132 | Msa0147370:three_prime_UTR | 40.0% | |
| !! | TGGATTTGGCCTTATTGACT+AGG | + | chr1_4:7353133-7353152 | Msa0147370:three_prime_UTR | 40.0% |
| GAGTCATGTCCTAGTCAATA+AGG | - | chr1_4:7353145-7353164 | None:intergenic | 40.0% | |
| GACAAAATGTCAAGGGTTGT+AGG | - | chr1_4:7353184-7353203 | None:intergenic | 40.0% | |
| GTCCTAAAAAACCTTTGTGC+AGG | + | chr1_4:7353201-7353220 | Msa0147370:three_prime_UTR | 40.0% | |
| !!! | CTCCTGCACAAAGGTTTTTT+AGG | - | chr1_4:7353206-7353225 | None:intergenic | 40.0% |
| CTAAAAAACCTTTGTGCAGG+AGG | + | chr1_4:7353204-7353223 | Msa0147370:three_prime_UTR | 40.0% | |
| TCCCCATGTTATAGATCACT+AGG | + | chr1_4:7353340-7353359 | Msa0147370:three_prime_UTR | 40.0% | |
| GCCTAGTGATCTATAACATG+GGG | - | chr1_4:7353344-7353363 | None:intergenic | 40.0% | |
| GGTGGGATTCATTTATTGGT+TGG | + | chr1_4:7353395-7353414 | Msa0147370:three_prime_UTR | 40.0% | |
| CCAGCATTTGAAAGAATCCC+TGG | - | chr1_4:7351283-7351302 | None:intergenic | 45.0% | |
| CCAGGGATTCTTTCAAATGC+TGG | + | chr1_4:7351280-7351299 | Msa0147370:CDS | 45.0% | |
| !! | ACAGGCTTTGTTCTCCAAAC+CGG | + | chr1_4:7351322-7351341 | Msa0147370:CDS | 45.0% |
| AAAGAGTTCTGCCCCAGAAA+CGG | - | chr1_4:7351387-7351406 | None:intergenic | 45.0% | |
| AAGGTTGAATGCTCTGGCAA+CGG | + | chr1_4:7351463-7351482 | Msa0147370:CDS | 45.0% | |
| AATTCGGCTAAAGTTGCTGG+CGG | - | chr1_4:7351496-7351515 | None:intergenic | 45.0% | |
| GTGAATTCGGCTAAAGTTGC+TGG | - | chr1_4:7351499-7351518 | None:intergenic | 45.0% | |
| GAATTCACATTAGACGGCTC+TGG | + | chr1_4:7351511-7351530 | Msa0147370:CDS | 45.0% | |
| TGGCGATAATTGCACTACCA+CGG | + | chr1_4:7351609-7351628 | Msa0147370:CDS | 45.0% | |
| CTTAGAGTGATGAGTGTGGA+TGG | + | chr1_4:7351670-7351689 | Msa0147370:CDS | 45.0% | |
| ATGAGTGTGGATGGGAAAGA+CGG | + | chr1_4:7351679-7351698 | Msa0147370:CDS | 45.0% | |
| GTAGAAGGTTTGCAAGTGTC+TGG | - | chr1_4:7351775-7351794 | None:intergenic | 45.0% | |
| ! | TAATTTAGAGTTCGGTCGCG+AGG | - | chr1_4:7352222-7352241 | None:intergenic | 45.0% |
| TGATTACCCACCAATCATGG+TGG | - | chr1_4:7352330-7352349 | None:intergenic | 45.0% | |
| AGGTGAAGCAACATAATGGC+CGG | + | chr1_4:7352407-7352426 | Msa0147370:intron | 45.0% | |
| TCCAATGTGATAGGTCTCCT+TGG | + | chr1_4:7352465-7352484 | Msa0147370:intron | 45.0% | |
| ACCAAGGAGACCTATCACAT+TGG | - | chr1_4:7352469-7352488 | None:intergenic | 45.0% | |
| GAGGGGTGGGATTCATTTAT+TGG | + | chr1_4:7353391-7353410 | Msa0147370:three_prime_UTR | 45.0% | |
| !! | AGCCTGTGGTTGGAAGTGTT+GGG | - | chr1_4:7351309-7351328 | None:intergenic | 50.0% |
| ! | AAGCCTGTGGTTGGAAGTGT+TGG | - | chr1_4:7351310-7351329 | None:intergenic | 50.0% |
| TGGAGAACAAAGCCTGTGGT+TGG | - | chr1_4:7351319-7351338 | None:intergenic | 50.0% | |
| GGTTTGGAGAACAAAGCCTG+TGG | - | chr1_4:7351323-7351342 | None:intergenic | 50.0% | |
| TCATGTGTAACCGGCGATTG+TGG | + | chr1_4:7351433-7351452 | Msa0147370:CDS | 50.0% | |
| TCCGGAAAGGTTGAATGCTC+TGG | + | chr1_4:7351457-7351476 | Msa0147370:CDS | 50.0% | |
| ! | GCCAGAGCATTCAACCTTTC+CGG | - | chr1_4:7351461-7351480 | None:intergenic | 50.0% |
| ! | TTCACATTAGACGGCTCTGG+TGG | + | chr1_4:7351514-7351533 | Msa0147370:CDS | 50.0% |
| ! | TCACATTAGACGGCTCTGGT+GGG | + | chr1_4:7351515-7351534 | Msa0147370:CDS | 50.0% |
| GGCGATAATTGCACTACCAC+GGG | + | chr1_4:7351610-7351629 | Msa0147370:CDS | 50.0% | |
| GAGATCACTGATACATCCCG+TGG | - | chr1_4:7351629-7351648 | None:intergenic | 50.0% | |
| CTCATCACTCTAAGCTCCGA+AGG | - | chr1_4:7351664-7351683 | None:intergenic | 50.0% | |
| GGAGCTTAGAGTGATGAGTG+TGG | + | chr1_4:7351666-7351685 | Msa0147370:CDS | 50.0% | |
| ATAGCTATATGCACGTGGGC+AGG | - | chr1_4:7351821-7351840 | None:intergenic | 50.0% | |
| TGTGATAGGTCTCCTTGGTC+AGG | + | chr1_4:7352470-7352489 | Msa0147370:intron | 50.0% | |
| GTCTCCTTGGTCAGGTACTA+GGG | + | chr1_4:7352478-7352497 | Msa0147370:intron | 50.0% | |
| GTCATTGCTAAGCTGAGGTG+AGG | - | chr1_4:7352816-7352835 | None:intergenic | 50.0% | |
| GCATCACTATGGTCCTTTGG+CGG | + | chr1_4:7352933-7352952 | Msa0147370:CDS | 50.0% | |
| TGTGACTACACAGTGTGGCC+AGG | + | chr1_4:7351262-7351281 | Msa0147370:CDS | 55.0% | |
| GTGACTACACAGTGTGGCCA+GGG | + | chr1_4:7351263-7351282 | Msa0147370:CDS | 55.0% | |
| GTCCCAACACTTCCAACCAC+AGG | + | chr1_4:7351304-7351323 | Msa0147370:CDS | 55.0% | |
| CTTTGCTCCCAAGACACCGA+TGG | + | chr1_4:7351403-7351422 | Msa0147370:CDS | 55.0% | |
| !! | TCACCGGAGTATTGCTGCAG+CGG | + | chr1_4:7351736-7351755 | Msa0147370:CDS | 55.0% |
| GGTCTCCTTGGTCAGGTACT+AGG | + | chr1_4:7352477-7352496 | Msa0147370:intron | 55.0% | |
| TGGTCCCTAGTACCTGACCA+AGG | - | chr1_4:7352485-7352504 | None:intergenic | 55.0% | |
| TATGGGTGGCACACATGCCA+AGG | + | chr1_4:7352552-7352571 | Msa0147370:intron | 55.0% | |
| ATGGGTGGCACACATGCCAA+GGG | + | chr1_4:7352553-7352572 | Msa0147370:intron | 55.0% | |
| TTGGAGCACATGGGTGCACA+TGG | - | chr1_4:7352888-7352907 | None:intergenic | 55.0% | |
| AGAGTTGGCACAACCGCCAA+AGG | - | chr1_4:7352949-7352968 | None:intergenic | 55.0% | |
| TAGCTTGGCCTCCTGCACAA+AGG | - | chr1_4:7353215-7353234 | None:intergenic | 55.0% | |
| ! | CGGTGGTGGTTTCACCGGTT+TGG | - | chr1_4:7351339-7351358 | None:intergenic | 60.0% |
| GTAACCGGCGATTGTGGCTC+CGG | + | chr1_4:7351439-7351458 | Msa0147370:CDS | 60.0% | |
| CTTTCCGGAGCCACAATCGC+CGG | - | chr1_4:7351446-7351465 | None:intergenic | 60.0% | |
| GGCTAAAGTTGCTGGCGGTG+TGG | - | chr1_4:7351491-7351510 | None:intergenic | 60.0% | |
| CCTATGCTAGTCGCCCCTCA+GGG | + | chr1_4:7351580-7351599 | Msa0147370:CDS | 60.0% | |
| TCTCAACGGCGCGTGTCCTT+CGG | + | chr1_4:7351645-7351664 | Msa0147370:CDS | 60.0% | |
| TATTGCTGCAGCGGCGCGTA+TGG | + | chr1_4:7351745-7351764 | Msa0147370:CDS | 60.0% | |
| ATTGCTGCAGCGGCGCGTAT+GGG | + | chr1_4:7351746-7351765 | Msa0147370:CDS | 60.0% | |
| ! | GGCGACGGTGGTGGTTTCAC+CGG | - | chr1_4:7351344-7351363 | None:intergenic | 65.0% |
| CTCATGGGGCGGCCGTTTCT+GGG | + | chr1_4:7351372-7351391 | Msa0147370:CDS | 65.0% | |
| TCATGGGGCGGCCGTTTCTG+GGG | + | chr1_4:7351373-7351392 | Msa0147370:CDS | 65.0% | |
| CGGCGATTGTGGCTCCGGAA+AGG | + | chr1_4:7351444-7351463 | Msa0147370:CDS | 65.0% | |
| GCCTATGCTAGTCGCCCCTC+AGG | + | chr1_4:7351579-7351598 | Msa0147370:CDS | 65.0% | |
| CCCTGAGGGGCGACTAGCAT+AGG | - | chr1_4:7351583-7351602 | None:intergenic | 65.0% | |
| ATGCTAGTCGCCCCTCAGGG+CGG | + | chr1_4:7351583-7351602 | Msa0147370:CDS | 65.0% | |
| TATCGCCAGAGCCGCCCTGA+GGG | - | chr1_4:7351597-7351616 | None:intergenic | 65.0% | |
| TTATCGCCAGAGCCGCCCTG+AGG | - | chr1_4:7351598-7351617 | None:intergenic | 65.0% | |
| GCGCCGCTGCAGCAATACTC+CGG | - | chr1_4:7351742-7351761 | None:intergenic | 65.0% | |
| CCATGAGGCTGGTGCGGCGA+CGG | - | chr1_4:7351359-7351378 | None:intergenic | 70.0% | |
| CGTCGCCGCACCAGCCTCAT+GGG | + | chr1_4:7351357-7351376 | Msa0147370:CDS | 70.0% | |
| GTCGCCGCACCAGCCTCATG+GGG | + | chr1_4:7351358-7351377 | Msa0147370:CDS | 70.0% | |
| AAACGGCCGCCCCATGAGGC+TGG | - | chr1_4:7351370-7351389 | None:intergenic | 70.0% | |
| CCAGAAACGGCCGCCCCATG+AGG | - | chr1_4:7351374-7351393 | None:intergenic | 70.0% | |
| CCTCATGGGGCGGCCGTTTC+TGG | + | chr1_4:7351371-7351390 | Msa0147370:CDS | 70.0% | |
| ATCGCCAGAGCCGCCCTGAG+GGG | - | chr1_4:7351596-7351615 | None:intergenic | 70.0% | |
| TGAGGCTGGTGCGGCGACGG+TGG | - | chr1_4:7351356-7351375 | None:intergenic | 75.0% | |
| CCGTCGCCGCACCAGCCTCA+TGG | + | chr1_4:7351356-7351375 | Msa0147370:CDS | 75.0% | |
| GCCGCACCAGCCTCATGGGG+CGG | + | chr1_4:7351361-7351380 | Msa0147370:CDS | 75.0% | |
| GCCGCCCCATGAGGCTGGTG+CGG | - | chr1_4:7351365-7351384 | None:intergenic | 75.0% | |
| ! | GGCTGGTGCGGCGACGGTGG+TGG | - | chr1_4:7351353-7351372 | None:intergenic | 80.0% |
| ! | GTCGCCCCTCAGGGCGGCTC+TGG | + | chr1_4:7351589-7351608 | Msa0147370:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 7350930 | 7353514 | 7350930 | ID=Msa0147370;Name=Msa0147370 |
| chr1_4 | mRNA | 7350930 | 7353514 | 7350930 | ID=Msa0147370-mRNA-1;Parent=Msa0147370;Name=Msa0147370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=101|1|1|1|1|1|3|541|325 |
| chr1_4 | exon | 7350930 | 7351097 | 7350930 | ID=Msa0147370-mRNA-1:exon:3170;Parent=Msa0147370-mRNA-1 |
| chr1_4 | exon | 7351227 | 7351923 | 7351227 | ID=Msa0147370-mRNA-1:exon:3171;Parent=Msa0147370-mRNA-1 |
| chr1_4 | exon | 7352760 | 7353514 | 7352760 | ID=Msa0147370-mRNA-1:exon:3172;Parent=Msa0147370-mRNA-1 |
| chr1_4 | five_prime_UTR | 7350930 | 7351030 | 7350930 | ID=Msa0147370-mRNA-1:five_prime_utr;Parent=Msa0147370-mRNA-1 |
| chr1_4 | CDS | 7351031 | 7351097 | 7351031 | ID=Msa0147370-mRNA-1:cds;Parent=Msa0147370-mRNA-1 |
| chr1_4 | CDS | 7351227 | 7351923 | 7351227 | ID=Msa0147370-mRNA-1:cds;Parent=Msa0147370-mRNA-1 |
| chr1_4 | CDS | 7352760 | 7352973 | 7352760 | ID=Msa0147370-mRNA-1:cds;Parent=Msa0147370-mRNA-1 |
| chr1_4 | three_prime_UTR | 7352974 | 7353514 | 7352974 | ID=Msa0147370-mRNA-1:three_prime_utr;Parent=Msa0147370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
