Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003940 | XP_003589504.2 | 96.942 | 327 | 4 | 2 | 1 | 325 | 1 | 323 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003940 | sp|A0A1P8B554|THLP1_ARATH | 59.608 | 255 | 91 | 4 | 3 | 251 | 9 | 257 | 6.93e-97 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003940 | Msa0057900 | 0.957574 | 1.953462e-115 | -8.615850e-47 |
| Msa0003940 | Msa0102590 | 0.959775 | 8.150633e-118 | -8.615850e-47 |
| Msa0003940 | Msa0147370 | 0.884566 | 1.718901e-71 | -8.615850e-47 |
| Msa0003940 | Msa0427930 | 0.811879 | 5.614551e-51 | -8.615850e-47 |
| Msa0003940 | Msa0430230 | 0.827430 | 1.570964e-54 | -8.615850e-47 |
| Msa0003940 | Msa0717380 | 0.805187 | 1.506553e-49 | -8.615850e-47 |
| Msa0003940 | Msa0835930 | 0.801898 | 7.246316e-49 | -8.615850e-47 |
| Msa0003940 | Msa1078890 | 0.822821 | 1.929648e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003940 | MtrunA17_Chr1g0156711 | 96.942 | 327 | 4 | 2 | 1 | 325 | 1 | 323 | 0.0 | 640 |
| Msa0003940 | MtrunA17_Chr3g0142781 | 75.000 | 320 | 73 | 4 | 10 | 325 | 8 | 324 | 1.38e-171 | 479 |
| Msa0003940 | MtrunA17_Chr8g0352471 | 56.875 | 320 | 119 | 9 | 5 | 318 | 6 | 312 | 4.49e-120 | 348 |
| Msa0003940 | MtrunA17_Chr5g0405581 | 68.852 | 244 | 72 | 3 | 15 | 255 | 14 | 256 | 3.46e-118 | 342 |
| Msa0003940 | MtrunA17_Chr8g0371781 | 70.464 | 237 | 63 | 3 | 20 | 251 | 21 | 255 | 1.77e-116 | 338 |
| Msa0003940 | MtrunA17_Chr4g0037351 | 52.960 | 321 | 137 | 5 | 6 | 324 | 3 | 311 | 7.40e-115 | 335 |
| Msa0003940 | MtrunA17_Chr8g0357311 | 63.602 | 261 | 88 | 5 | 1 | 260 | 1 | 255 | 5.56e-113 | 328 |
| Msa0003940 | MtrunA17_Chr4g0037331 | 64.876 | 242 | 74 | 5 | 8 | 249 | 9 | 239 | 3.53e-104 | 308 |
| Msa0003940 | MtrunA17_Chr5g0405611 | 51.420 | 317 | 139 | 7 | 3 | 318 | 74 | 376 | 1.95e-99 | 298 |
| Msa0003940 | MtrunA17_Chr8g0371771 | 61.134 | 247 | 86 | 5 | 3 | 249 | 7 | 243 | 5.55e-99 | 294 |
| Msa0003940 | MtrunA17_Chr7g0265011 | 55.230 | 239 | 104 | 3 | 11 | 249 | 51 | 286 | 5.77e-95 | 283 |
| Msa0003940 | MtrunA17_Chr1g0180221 | 56.175 | 251 | 102 | 5 | 1 | 251 | 41 | 283 | 1.80e-87 | 264 |
| Msa0003940 | MtrunA17_Chr1g0180121 | 52.263 | 243 | 113 | 3 | 7 | 249 | 2 | 241 | 1.48e-86 | 260 |
| Msa0003940 | MtrunA17_Chr8g0351851 | 54.508 | 244 | 101 | 6 | 6 | 249 | 4 | 237 | 1.49e-86 | 259 |
| Msa0003940 | MtrunA17_Chr2g0312181 | 53.333 | 240 | 105 | 4 | 13 | 249 | 7 | 242 | 2.58e-86 | 259 |
| Msa0003940 | MtrunA17_Chr1g0179891 | 54.472 | 246 | 103 | 4 | 6 | 251 | 2 | 238 | 4.83e-86 | 258 |
| Msa0003940 | MtrunA17_Chr1g0180231 | 56.017 | 241 | 97 | 4 | 11 | 251 | 12 | 243 | 1.04e-85 | 258 |
| Msa0003940 | MtrunA17_Chr1g0179871 | 56.017 | 241 | 97 | 4 | 11 | 251 | 12 | 243 | 1.04e-85 | 258 |
| Msa0003940 | MtrunA17_Chr2g0311561 | 52.991 | 234 | 106 | 3 | 17 | 249 | 1 | 231 | 1.51e-85 | 259 |
| Msa0003940 | MtrunA17_Chr2g0311521 | 53.876 | 258 | 108 | 7 | 11 | 263 | 7 | 258 | 2.37e-85 | 277 |
| Msa0003940 | MtrunA17_Chr5g0428801 | 51.163 | 258 | 118 | 5 | 9 | 263 | 8 | 260 | 6.43e-85 | 258 |
| Msa0003940 | MtrunA17_Chr1g0180161 | 54.357 | 241 | 101 | 4 | 11 | 251 | 12 | 243 | 1.96e-84 | 255 |
| Msa0003940 | MtrunA17_Chr1g0179851 | 57.658 | 222 | 91 | 3 | 30 | 251 | 22 | 240 | 2.14e-83 | 252 |
| Msa0003940 | MtrunA17_Chr6g0482741 | 50.833 | 240 | 113 | 4 | 10 | 249 | 5 | 239 | 3.48e-80 | 244 |
| Msa0003940 | MtrunA17_Chr1g0154591 | 57.522 | 226 | 88 | 6 | 26 | 249 | 12 | 231 | 4.83e-80 | 243 |
| Msa0003940 | MtrunA17_Chr8g0392961 | 52.917 | 240 | 108 | 4 | 10 | 249 | 10 | 244 | 7.78e-80 | 243 |
| Msa0003940 | MtrunA17_Chr2g0311551 | 53.061 | 245 | 107 | 6 | 21 | 263 | 17 | 255 | 9.57e-80 | 261 |
| Msa0003940 | MtrunA17_Chr3g0141341 | 53.913 | 230 | 98 | 7 | 27 | 255 | 12 | 234 | 6.14e-74 | 228 |
| Msa0003940 | MtrunA17_Chr5g0424221 | 48.810 | 252 | 115 | 9 | 1 | 250 | 1 | 240 | 3.68e-69 | 217 |
| Msa0003940 | MtrunA17_Chr3g0112091 | 49.367 | 237 | 109 | 8 | 19 | 249 | 5 | 236 | 2.61e-67 | 211 |
| Msa0003940 | MtrunA17_Chr6g0452331 | 43.548 | 248 | 132 | 8 | 5 | 249 | 9 | 251 | 5.00e-64 | 203 |
| Msa0003940 | MtrunA17_Chr7g0239131 | 46.531 | 245 | 125 | 6 | 9 | 252 | 5 | 244 | 5.68e-64 | 202 |
| Msa0003940 | MtrunA17_Chr4g0031221 | 44.444 | 225 | 117 | 7 | 29 | 249 | 31 | 251 | 6.63e-61 | 195 |
| Msa0003940 | MtrunA17_Chr5g0406771 | 53.672 | 177 | 77 | 3 | 15 | 188 | 1 | 175 | 6.96e-60 | 189 |
| Msa0003940 | MtrunA17_Chr2g0311531 | 47.162 | 229 | 91 | 8 | 22 | 249 | 22 | 221 | 1.75e-59 | 191 |
| Msa0003940 | MtrunA17_Chr2g0311501 | 48.108 | 185 | 87 | 7 | 69 | 249 | 2 | 181 | 3.35e-53 | 173 |
| Msa0003940 | MtrunA17_Chr5g0397831 | 40.964 | 249 | 118 | 8 | 8 | 249 | 9 | 235 | 6.18e-50 | 166 |
| Msa0003940 | MtrunA17_Chr5g0397821 | 40.000 | 225 | 111 | 7 | 26 | 249 | 23 | 224 | 1.53e-46 | 157 |
| Msa0003940 | MtrunA17_Chr8g0386341 | 39.918 | 243 | 118 | 9 | 10 | 249 | 30 | 247 | 5.30e-46 | 156 |
| Msa0003940 | MtrunA17_Chr2g0309611 | 31.048 | 248 | 155 | 6 | 10 | 248 | 9 | 249 | 7.11e-38 | 135 |
| Msa0003940 | MtrunA17_Chr1g0179911 | 32.000 | 250 | 149 | 7 | 7 | 251 | 6 | 239 | 2.68e-32 | 120 |
| Msa0003940 | MtrunA17_Chr8g0386351 | 43.262 | 141 | 68 | 6 | 5 | 142 | 40 | 171 | 2.29e-27 | 106 |
| Msa0003940 | MtrunA17_Chr1g0180181 | 58.333 | 84 | 34 | 1 | 168 | 251 | 18 | 100 | 2.61e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003940 | AT1G75800.1 | 63.609 | 327 | 95 | 4 | 13 | 321 | 9 | 329 | 1.58e-147 | 418 |
| Msa0003940 | AT1G20030.2 | 66.557 | 305 | 96 | 3 | 23 | 325 | 16 | 316 | 5.39e-144 | 409 |
| Msa0003940 | AT1G20030.1 | 66.337 | 303 | 96 | 3 | 25 | 325 | 1 | 299 | 1.05e-142 | 405 |
| Msa0003940 | AT4G36010.1 | 63.736 | 273 | 91 | 4 | 23 | 289 | 19 | 289 | 7.48e-118 | 342 |
| Msa0003940 | AT4G36010.2 | 63.736 | 273 | 91 | 4 | 23 | 289 | 19 | 289 | 7.48e-118 | 342 |
| Msa0003940 | AT4G38670.3 | 61.446 | 249 | 95 | 1 | 10 | 257 | 6 | 254 | 1.85e-110 | 322 |
| Msa0003940 | AT4G38670.1 | 61.446 | 249 | 95 | 1 | 10 | 257 | 6 | 254 | 1.85e-110 | 322 |
| Msa0003940 | AT4G38670.2 | 62.605 | 238 | 88 | 1 | 21 | 257 | 1 | 238 | 3.84e-108 | 316 |
| Msa0003940 | AT2G17860.1 | 62.857 | 245 | 86 | 4 | 13 | 253 | 9 | 252 | 4.56e-107 | 313 |
| Msa0003940 | AT4G38660.1 | 62.109 | 256 | 88 | 5 | 17 | 272 | 20 | 266 | 4.31e-102 | 303 |
| Msa0003940 | AT4G38660.2 | 62.302 | 252 | 86 | 5 | 21 | 272 | 2 | 244 | 3.99e-101 | 300 |
| Msa0003940 | AT4G24180.1 | 56.631 | 279 | 109 | 4 | 3 | 275 | 9 | 281 | 4.85e-99 | 295 |
| Msa0003940 | AT4G24180.6 | 59.608 | 255 | 91 | 4 | 3 | 251 | 9 | 257 | 7.04e-98 | 290 |
| Msa0003940 | AT4G24180.2 | 57.196 | 271 | 104 | 4 | 11 | 275 | 12 | 276 | 7.37e-98 | 291 |
| Msa0003940 | AT5G38280.1 | 54.373 | 263 | 113 | 4 | 13 | 269 | 11 | 272 | 2.63e-97 | 301 |
| Msa0003940 | AT5G38280.2 | 54.373 | 263 | 113 | 4 | 13 | 269 | 11 | 272 | 4.43e-97 | 301 |
| Msa0003940 | AT4G24180.5 | 60.324 | 247 | 86 | 4 | 11 | 251 | 12 | 252 | 1.62e-96 | 286 |
| Msa0003940 | AT4G24180.3 | 59.307 | 231 | 83 | 3 | 10 | 234 | 16 | 241 | 8.23e-89 | 269 |
| Msa0003940 | AT4G24180.4 | 58.696 | 230 | 84 | 3 | 11 | 234 | 12 | 236 | 6.73e-88 | 266 |
| Msa0003940 | AT1G19320.1 | 57.831 | 249 | 89 | 9 | 8 | 250 | 9 | 247 | 3.39e-87 | 262 |
| Msa0003940 | AT1G75030.1 | 58.442 | 231 | 88 | 7 | 26 | 255 | 23 | 246 | 4.27e-84 | 254 |
| Msa0003940 | AT1G75050.1 | 56.962 | 237 | 97 | 5 | 13 | 249 | 11 | 242 | 4.97e-84 | 254 |
| Msa0003940 | AT1G75040.1 | 56.148 | 244 | 99 | 6 | 6 | 249 | 3 | 238 | 1.03e-83 | 253 |
| Msa0003940 | AT1G18250.1 | 54.464 | 224 | 97 | 4 | 26 | 249 | 20 | 238 | 7.04e-80 | 243 |
| Msa0003940 | AT1G18250.2 | 54.464 | 224 | 97 | 4 | 26 | 249 | 21 | 239 | 8.02e-80 | 243 |
| Msa0003940 | AT5G24620.1 | 51.639 | 244 | 111 | 5 | 11 | 249 | 9 | 250 | 8.44e-80 | 249 |
| Msa0003940 | AT1G73620.1 | 55.357 | 224 | 95 | 4 | 26 | 249 | 41 | 259 | 9.80e-80 | 244 |
| Msa0003940 | AT5G24620.4 | 48.669 | 263 | 117 | 6 | 3 | 249 | 45 | 305 | 1.10e-79 | 250 |
| Msa0003940 | AT5G24620.3 | 48.669 | 263 | 117 | 6 | 3 | 249 | 66 | 326 | 1.35e-79 | 251 |
| Msa0003940 | AT1G77700.3 | 51.304 | 230 | 92 | 9 | 26 | 251 | 60 | 273 | 3.77e-70 | 221 |
| Msa0003940 | AT1G77700.2 | 51.327 | 226 | 98 | 8 | 26 | 251 | 60 | 273 | 1.06e-69 | 220 |
| Msa0003940 | AT1G77700.1 | 51.327 | 226 | 98 | 8 | 26 | 251 | 88 | 301 | 1.42e-69 | 221 |
| Msa0003940 | AT2G28790.2 | 47.107 | 242 | 120 | 7 | 12 | 249 | 36 | 273 | 4.58e-67 | 212 |
| Msa0003940 | AT2G28790.1 | 47.107 | 242 | 120 | 7 | 12 | 249 | 11 | 248 | 4.72e-67 | 211 |
| Msa0003940 | AT1G70250.1 | 47.083 | 240 | 114 | 6 | 25 | 258 | 143 | 375 | 2.77e-65 | 220 |
| Msa0003940 | AT4G36000.2 | 62.644 | 174 | 53 | 5 | 103 | 274 | 1 | 164 | 8.14e-65 | 204 |
| Msa0003940 | AT4G36000.1 | 62.644 | 174 | 53 | 5 | 103 | 274 | 1 | 164 | 8.14e-65 | 204 |
| Msa0003940 | AT4G18253.1 | 43.443 | 244 | 128 | 4 | 13 | 255 | 9 | 243 | 1.44e-64 | 204 |
| Msa0003940 | AT5G40020.1 | 46.256 | 227 | 117 | 5 | 26 | 251 | 27 | 249 | 3.35e-63 | 201 |
| Msa0003940 | AT4G18250.1 | 44.030 | 268 | 139 | 6 | 13 | 277 | 42 | 301 | 3.24e-62 | 210 |
| Msa0003940 | AT5G02140.1 | 44.177 | 249 | 133 | 6 | 14 | 260 | 7 | 251 | 2.15e-61 | 197 |
| Msa0003940 | AT5G02140.2 | 45.798 | 238 | 123 | 6 | 14 | 249 | 7 | 240 | 1.13e-60 | 194 |
| Msa0003940 | AT4G11650.1 | 39.506 | 243 | 122 | 8 | 8 | 249 | 4 | 222 | 2.30e-49 | 165 |
| Msa0003940 | AT5G24620.2 | 56.667 | 120 | 47 | 3 | 134 | 249 | 15 | 133 | 1.42e-37 | 136 |
| Msa0003940 | AT2G24810.1 | 62.195 | 82 | 26 | 3 | 170 | 250 | 116 | 193 | 8.16e-27 | 105 |
Find 136 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATGGGGCGGCCGTTTC+TGG | -0.083846 | 1_1:-6431652 | Msa0003940:CDS |
| CTAATGAGATCTTCATTCTT+AGG | 0.152586 | 1_1:-6430053 | Msa0003940:exon |
| GACCACACATTCACGTTTAT+TGG | 0.178738 | 1_1:-6429991 | Msa0003940:three_prime_UTR |
| GCACTTCATCTATCAATTTC+AGG | 0.196637 | 1_1:-6431947 | Msa0003940:intron |
| GCCAGAGCATTCAACCTTTC+CGG | 0.211647 | 1_1:+6431565 | None:intergenic |
| GAGGGGTGGGATTCATTTAT+TGG | 0.238808 | 1_1:-6429631 | Msa0003940:three_prime_UTR |
| CTCATGGGGCGGCCGTTTCT+GGG | 0.253028 | 1_1:-6431651 | Msa0003940:CDS |
| TGGTTGGAGAATGTAATATT+TGG | 0.270579 | 1_1:-6429611 | Msa0003940:three_prime_UTR |
| TTAAGTATGGCTCATGGATT+TGG | 0.313740 | 1_1:-6429904 | Msa0003940:three_prime_UTR |
| CCAGGGATTCTTTCAAATGC+TGG | 0.316773 | 1_1:-6431743 | Msa0003940:CDS |
| ATTTATACATGTAGCAATAT+AGG | 0.317837 | 1_1:-6429771 | Msa0003940:three_prime_UTR |
| TGTAATATTTGGCTACAATA+AGG | 0.334675 | 1_1:-6429600 | Msa0003940:three_prime_UTR |
| TTTAAAGAGGGTCCCACATT+TGG | 0.343784 | 1_1:+6429967 | None:intergenic |
| AACAATTGAGAATAAGTAGA+AGG | 0.345262 | 1_1:+6431236 | None:intergenic |
| CAGGGATTCTTTCAAATGCT+GGG | 0.347178 | 1_1:-6431742 | Msa0003940:CDS |
| GAGTCATGTCCTAGTCAATA+AGG | 0.357507 | 1_1:+6429881 | None:intergenic |
| ATATAGGTGACGATGTAGTT+AGG | 0.361985 | 1_1:-6429755 | Msa0003940:three_prime_UTR |
| CAGTGGTGGTTTCGCCGGTT+TGG | 0.373152 | 1_1:+6431687 | None:intergenic |
| TATTGCTGCAGCGGCGCGTA+TGG | 0.373787 | 1_1:-6431278 | Msa0003940:CDS |
| ATGCCTAGTGATCTATAATC+TGG | 0.384257 | 1_1:+6429679 | None:intergenic |
| TCATATCTTACATATACATA+TGG | 0.390366 | 1_1:-6432011 | Msa0003940:exon |
| TAATGAGATCTTCATTCTTA+GGG | 0.392642 | 1_1:-6430052 | Msa0003940:three_prime_UTR |
| TTCGATGTTAGTCTTGTTGA+CGG | 0.393312 | 1_1:-6431476 | Msa0003940:CDS |
| GGAAAATTCTCATGTGTAAC+CGG | 0.404051 | 1_1:-6431599 | Msa0003940:CDS |
| TGCACGCAATAGTTTGTGAT+TGG | 0.405228 | 1_1:+6430119 | None:intergenic |
| GTCGCCCCTCAGGGCGGCTC+TGG | 0.409338 | 1_1:-6431434 | Msa0003940:CDS |
| TCTCAACGGCGCGTGTCCTT+CGG | 0.414761 | 1_1:-6431378 | Msa0003940:CDS |
| TTAGCATCACTATGGTCCTT+TGG | 0.416286 | 1_1:-6430093 | Msa0003940:CDS |
| GCCTATGCTAGTCGCCCCTC+AGG | 0.418663 | 1_1:-6431444 | Msa0003940:CDS |
| TTCTTTGTATTGAGAGGGGT+GGG | 0.429939 | 1_1:-6429644 | Msa0003940:three_prime_UTR |
| TCCGGAAAGGTTGAATGCTC+TGG | 0.437194 | 1_1:-6431566 | Msa0003940:CDS |
| GTGAATTCGGCTAAAGTTGC+CGG | 0.439691 | 1_1:+6431527 | None:intergenic |
| TGTATAAATAAATAAATGTA+TGG | 0.451975 | 1_1:+6429785 | None:intergenic |
| ACGTGAATGTGTGGTCATAT+TGG | 0.457357 | 1_1:+6429998 | None:intergenic |
| AACCATGTGTGAGTTAAGTA+TGG | 0.464049 | 1_1:-6429917 | Msa0003940:three_prime_UTR |
| AGAGCCGTCTAATGTGAATT+CGG | 0.464663 | 1_1:+6431514 | None:intergenic |
| TGTCACCGCACCAGCCTCAT+GGG | 0.466682 | 1_1:-6431666 | Msa0003940:CDS |
| GTGCATTATTAGCATCACTA+TGG | 0.467599 | 1_1:-6430101 | Msa0003940:CDS |
| ACAGGCTTTGTTCTCCAAAC+CGG | 0.470298 | 1_1:-6431701 | Msa0003940:CDS |
| GTAACCGGCGATTGTGGCTC+CGG | 0.470556 | 1_1:-6431584 | Msa0003940:CDS |
| GTAGAAGGTTTGCAAGTGTC+TGG | 0.470850 | 1_1:+6431251 | None:intergenic |
| CACGTTTATTGGTCCAAATG+TGG | 0.476217 | 1_1:-6429980 | Msa0003940:three_prime_UTR |
| TTATGAGATTTGATGAAATG+AGG | 0.483107 | 1_1:+6432093 | None:intergenic |
| AAACGGCCGCCCCATGAGGC+TGG | 0.484136 | 1_1:+6431656 | None:intergenic |
| CTGTCACCGCACCAGCCTCA+TGG | 0.485359 | 1_1:-6431667 | Msa0003940:CDS |
| GGTGGGATTCATTTATTGGT+TGG | 0.492822 | 1_1:-6429627 | Msa0003940:three_prime_UTR |
| CCAGCATTTGAAAGAATCCC+TGG | 0.493036 | 1_1:+6431743 | None:intergenic |
| TTGAATTCTTTGTATTGAGA+GGG | 0.494536 | 1_1:-6429649 | Msa0003940:three_prime_UTR |
| TGTGACTACACAGTGTGGCC+AGG | 0.496467 | 1_1:-6431761 | Msa0003940:CDS |
| GGTGACAGTGGTGGTTTCGC+CGG | 0.497671 | 1_1:+6431682 | None:intergenic |
| TGGATTTGGCCTTATTGACT+AGG | 0.503947 | 1_1:-6429890 | Msa0003940:three_prime_UTR |
| TGCCTAGTGATCTATAATCT+GGG | 0.504280 | 1_1:+6429680 | None:intergenic |
| TATAGGTGACGATGTAGTTA+GGG | 0.505321 | 1_1:-6429754 | Msa0003940:three_prime_UTR |
| AAAGAGTTCTGCCCCAGAAA+CGG | 0.509995 | 1_1:+6431639 | None:intergenic |
| TCATGGGGCGGCCGTTTCTG+GGG | 0.511165 | 1_1:-6431650 | Msa0003940:CDS |
| ATAAATGTATGGTGGTAGCT+TGG | 0.512014 | 1_1:+6429796 | None:intergenic |
| GAAGATCTCATTAGAAGAGT+TGG | 0.513485 | 1_1:+6430062 | None:intergenic |
| GCATCACTATGGTCCTTTGG+CGG | 0.514552 | 1_1:-6430090 | Msa0003940:CDS |
| GACAAAATGTCAAGGGTTGT+AGG | 0.515639 | 1_1:+6429842 | None:intergenic |
| ATTGAATTCTTTGTATTGAG+AGG | 0.516735 | 1_1:-6429650 | Msa0003940:three_prime_UTR |
| AAAGTAACTAACCTTGTGGT+TGG | 0.518082 | 1_1:+6431110 | None:intergenic |
| AAGCCTGTGGTTGGAAGTGT+TGG | 0.519230 | 1_1:+6431716 | None:intergenic |
| ATGATTATGGTCCTAACTAC+AGG | 0.521198 | 1_1:+6430021 | None:intergenic |
| TATCGCCAGAGCCGCCCTGA+GGG | 0.521997 | 1_1:+6431429 | None:intergenic |
| CCCTGAGGGGCGACTAGCAT+AGG | 0.525025 | 1_1:+6431443 | None:intergenic |
| TCATGTGTAACCGGCGATTG+TGG | 0.527231 | 1_1:-6431590 | Msa0003940:CDS |
| GAATTCACATTAGACGGCTC+TGG | 0.528881 | 1_1:-6431512 | Msa0003940:CDS |
| CTTTGCTCCCAAGACACTGA+TGG | 0.532188 | 1_1:-6431620 | Msa0003940:CDS |
| TTCACATTAGACGGCTCTGG+TGG | 0.532251 | 1_1:-6431509 | Msa0003940:CDS |
| ATTGCTGCAGCGGCGCGTAT+GGG | 0.534091 | 1_1:-6431277 | Msa0003940:CDS |
| GGCGATAATTGCACTACCAC+GGG | 0.537099 | 1_1:-6431413 | Msa0003940:CDS |
| TCCCCAGATTATAGATCACT+AGG | 0.540386 | 1_1:-6429682 | Msa0003940:three_prime_UTR |
| GGCTAAAGTTGCCGGCGGTG+TGG | 0.544415 | 1_1:+6431535 | None:intergenic |
| TTCAGTCAAAAGGCAACACA+AGG | 0.545590 | 1_1:-6430268 | Msa0003940:intron |
| ATAGCTATATGCACGTGGGC+AGG | 0.548259 | 1_1:+6431205 | None:intergenic |
| ACGTTTATTGGTCCAAATGT+GGG | 0.552340 | 1_1:-6429979 | Msa0003940:three_prime_UTR |
| CTTAGAGTGATGAGTGTGGA+TGG | 0.554333 | 1_1:-6431353 | Msa0003940:CDS |
| TGGAGAACAAAGCCTGTGGT+TGG | 0.555388 | 1_1:+6431707 | None:intergenic |
| CCTATGCTAGTCGCCCCTCA+GGG | 0.555587 | 1_1:-6431443 | Msa0003940:CDS |
| AGGGATTCTTTCAAATGCTG+GGG | 0.560190 | 1_1:-6431741 | Msa0003940:CDS |
| GCCGCCCCATGAGGCTGGTG+CGG | 0.562230 | 1_1:+6431661 | None:intergenic |
| GCGCCGCTGCAGCAATACTC+CGG | 0.562265 | 1_1:+6431284 | None:intergenic |
| CTTTCCGGAGCCACAATCGC+CGG | 0.563498 | 1_1:+6431580 | None:intergenic |
| ATTCTTTGTATTGAGAGGGG+TGG | 0.565172 | 1_1:-6429645 | Msa0003940:three_prime_UTR |
| CGGCGATTGTGGCTCCGGAA+AGG | 0.566510 | 1_1:-6431579 | Msa0003940:CDS |
| GTGACTACACAGTGTGGCCA+GGG | 0.569936 | 1_1:-6431760 | Msa0003940:CDS |
| TGAATTCTTTGTATTGAGAG+GGG | 0.570466 | 1_1:-6429648 | Msa0003940:three_prime_UTR |
| GTGGTCATATTGGATGATTA+TGG | 0.572627 | 1_1:+6430008 | None:intergenic |
| GTCCCAACACTTCCAACCAC+AGG | 0.572652 | 1_1:-6431719 | Msa0003940:CDS |
| AAGGTTGAATGCTCTGGCAA+CGG | 0.576244 | 1_1:-6431560 | Msa0003940:CDS |
| TTAGCCGAATTCACATTAGA+CGG | 0.576825 | 1_1:-6431518 | Msa0003940:CDS |
| TGGCAACGGAGCCACACCGC+CGG | 0.578628 | 1_1:-6431546 | Msa0003940:CDS |
| TAGTTTGTGATTGGAGCACA+TGG | 0.581696 | 1_1:+6430128 | None:intergenic |
| ACCGCACCAGCCTCATGGGG+CGG | 0.586044 | 1_1:-6431662 | Msa0003940:CDS |
| CATGACTCATTTCAAAGGAA+AGG | 0.591738 | 1_1:-6429866 | Msa0003940:three_prime_UTR |
| ATGAGTGTGGATGGGAAAGA+CGG | 0.592613 | 1_1:-6431344 | Msa0003940:CDS |
| TGGCGATAATTGCACTACCA+CGG | 0.593427 | 1_1:-6431414 | Msa0003940:CDS |
| GACAATACAATGGTGTATGA+AGG | 0.596541 | 1_1:-6430190 | Msa0003940:CDS |
| CCAGAAACGGCCGCCCCATG+AGG | 0.596649 | 1_1:+6431652 | None:intergenic |
| TAGGACATGACTCATTTCAA+AGG | 0.597781 | 1_1:-6429871 | Msa0003940:three_prime_UTR |
| ATAAATAAATAAATGTATGG+TGG | 0.599349 | 1_1:+6429788 | None:intergenic |
| TCACCGGAGTATTGCTGCAG+CGG | 0.602026 | 1_1:-6431287 | Msa0003940:CDS |
| AGAGTTGGCACAACCGCCAA+AGG | 0.605702 | 1_1:+6430077 | None:intergenic |
| ATTTGCACAAGTGAAAGTGC+TGG | 0.609107 | 1_1:+6431166 | None:intergenic |
| TTGGAGCACATGGGTGCACA+TGG | 0.612628 | 1_1:+6430138 | None:intergenic |
| TTATCGCCAGAGCCGCCCTG+AGG | 0.617214 | 1_1:+6431428 | None:intergenic |
| AGCCTGTGGTTGGAAGTGTT+GGG | 0.621679 | 1_1:+6431717 | None:intergenic |
| TGTGAGTTAAGTATGGCTCA+TGG | 0.623058 | 1_1:-6429910 | Msa0003940:three_prime_UTR |
| TAGCTTGGCCTCCTGCACAA+AGG | 0.623226 | 1_1:+6429811 | None:intergenic |
| TCACATTAGACGGCTCTGGT+GGG | 0.623574 | 1_1:-6431508 | Msa0003940:CDS |
| TGAGGCTGGTGCGGTGACAG+TGG | 0.623668 | 1_1:+6431670 | None:intergenic |
| ATCGCCAGAGCCGCCCTGAG+GGG | 0.629555 | 1_1:+6431430 | None:intergenic |
| GTCATTGCTAAGCTGAGGTG+AGG | 0.630131 | 1_1:+6430210 | None:intergenic |
| TTAGAGTGATGAGTGTGGAT+GGG | 0.630518 | 1_1:-6431352 | Msa0003940:CDS |
| GTCACCGCACCAGCCTCATG+GGG | 0.632870 | 1_1:-6431665 | Msa0003940:CDS |
| GGCTGGTGCGGTGACAGTGG+TGG | 0.635446 | 1_1:+6431673 | None:intergenic |
| GCCTAGTGATCTATAATCTG+GGG | 0.635627 | 1_1:+6429681 | None:intergenic |
| TTTGTTCTTCTCCAACCACA+AGG | 0.638050 | 1_1:-6431121 | Msa0003940:intron |
| CTCATCACTCTAAGCTCCGA+AGG | 0.638536 | 1_1:+6431362 | None:intergenic |
| AAATTGATAGTACTTGGTGG+TGG | 0.656416 | 1_1:+6431984 | None:intergenic |
| TAAGCATAGCTATATGCACG+TGG | 0.665332 | 1_1:+6431200 | None:intergenic |
| GACCAATAAACGTGAATGTG+TGG | 0.671423 | 1_1:+6429989 | None:intergenic |
| GGATGTATCAGTGATCTCAA+CGG | 0.673930 | 1_1:-6431392 | Msa0003940:CDS |
| GCTTAGCAATGACAATACAA+TGG | 0.678768 | 1_1:-6430200 | Msa0003940:CDS |
| GAGATCACTGATACATCCCG+TGG | 0.679790 | 1_1:+6431397 | None:intergenic |
| ATGCTAGTCGCCCCTCAGGG+CGG | 0.689357 | 1_1:-6431440 | Msa0003940:CDS |
| AGCCATACTTAACTCACACA+TGG | 0.689446 | 1_1:+6429915 | None:intergenic |
| GTATTGTCATTGCTAAGCTG+AGG | 0.695826 | 1_1:+6430205 | None:intergenic |
| GGTTTGGAGAACAAAGCCTG+TGG | 0.698538 | 1_1:+6431703 | None:intergenic |
| AATTCGGCTAAAGTTGCCGG+CGG | 0.706419 | 1_1:+6431530 | None:intergenic |
| AATACAATGGTGTATGAAGG+TGG | 0.707551 | 1_1:-6430187 | Msa0003940:CDS |
| TCAGTCAAAAGGCAACACAA+GGG | 0.710852 | 1_1:-6430267 | Msa0003940:intron |
| AAGCATAGCTATATGCACGT+GGG | 0.721806 | 1_1:+6431201 | None:intergenic |
| GGAGCTTAGAGTGATGAGTG+TGG | 0.722376 | 1_1:-6431357 | Msa0003940:CDS |
| ACAAATGTGACTACACAGTG+TGG | 0.729139 | 1_1:-6431766 | Msa0003940:CDS |
| AGTTTGTGATTGGAGCACAT+GGG | 0.759112 | 1_1:+6430129 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAATAAATAAATGTA+TGG | + | chr1_1:6431841-6431860 | None:intergenic | 10.0% |
| !!! | ATTGTCAAATTTTTTTTTAA+CGG | - | chr1_1:6432070-6432089 | Msa0003940:five_prime_UTR | 10.0% |
| !!! | AACTATTAAATGTTTGTTTT+TGG | + | chr1_1:6429731-6429750 | None:intergenic | 15.0% |
| !! | TAAGATTGATTATATTCAAT+AGG | + | chr1_1:6430589-6430608 | None:intergenic | 15.0% |
| !! | ATAAATAAATAAATGTATGG+TGG | + | chr1_1:6431838-6431857 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTTTGTATAAAAG+TGG | + | chr1_1:6429562-6429581 | None:intergenic | 20.0% |
| !! | AAGATATGAGAAAAAGAAAT+GGG | + | chr1_1:6429601-6429620 | None:intergenic | 20.0% |
| !! | TAAGATATGAGAAAAAGAAA+TGG | + | chr1_1:6429602-6429621 | None:intergenic | 20.0% |
| !! | TCATATCTTACATATACATA+TGG | - | chr1_1:6429612-6429631 | Msa0003940:three_prime_UTR | 20.0% |
| !!! | ATGAAAAAATTGATAGTACT+TGG | + | chr1_1:6429648-6429667 | None:intergenic | 20.0% |
| !!! | TTTTTACGGTTATTATTTTG+AGG | + | chr1_1:6430551-6430570 | None:intergenic | 20.0% |
| !! | TTGAATATAATCAATCTTAC+CGG | - | chr1_1:6430590-6430609 | Msa0003940:intron | 20.0% |
| !! | TCATATTAGTTAAGATTTAC+CGG | + | chr1_1:6430612-6430631 | None:intergenic | 20.0% |
| !! | AATAAATTGTTCAATGAACT+CGG | - | chr1_1:6430753-6430772 | Msa0003940:intron | 20.0% |
| !!! | AGAACAATTTTTCTATGAAT+CGG | - | chr1_1:6430851-6430870 | Msa0003940:intron | 20.0% |
| !!! | ATATAATTTGGTTCTAGATA+TGG | + | chr1_1:6431105-6431124 | None:intergenic | 20.0% |
| !! | GTACATCAATCAATATAATT+TGG | + | chr1_1:6431117-6431136 | None:intergenic | 20.0% |
| !!! | TTATATTGATTGATGTACAT+TGG | - | chr1_1:6431119-6431138 | Msa0003940:intron | 20.0% |
| !!! | AGTCAAACTAATTTTAAAGA+GGG | + | chr1_1:6431671-6431690 | None:intergenic | 20.0% |
| !!! | AAGTCAAACTAATTTTAAAG+AGG | + | chr1_1:6431672-6431691 | None:intergenic | 20.0% |
| !! | ATTTATACATGTAGCAATAT+AGG | - | chr1_1:6431852-6431871 | Msa0003940:intron | 20.0% |
| ! | TTATGAGATTTGATGAAATG+AGG | + | chr1_1:6429533-6429552 | None:intergenic | 25.0% |
| !! | AAAAAATTGATAGTACTTGG+TGG | + | chr1_1:6429645-6429664 | None:intergenic | 25.0% |
| ! | AACAATTGAGAATAAGTAGA+AGG | + | chr1_1:6430390-6430409 | None:intergenic | 25.0% |
| ! | AAATAAAGTAACTAACCTTG+TGG | + | chr1_1:6430520-6430539 | None:intergenic | 25.0% |
| !!! | GCACAATGGTAAATTTTTTA+CGG | + | chr1_1:6430565-6430584 | None:intergenic | 25.0% |
| ! | GACAAAATTCATTAATCACT+TGG | + | chr1_1:6430729-6430748 | None:intergenic | 25.0% |
| ! | ATAAATTGTTCAATGAACTC+GGG | - | chr1_1:6430754-6430773 | Msa0003940:intron | 25.0% |
| !! | CTGTAAAGTAATTTAGAGTT+CGG | + | chr1_1:6430830-6430849 | None:intergenic | 25.0% |
| ! | TTCAATAGAAATTGATGCAA+AGG | - | chr1_1:6430952-6430971 | Msa0003940:intron | 25.0% |
| ! | TCAATAGAAATTGATGCAAA+GGG | - | chr1_1:6430953-6430972 | Msa0003940:intron | 25.0% |
| !! | ATAAAGTTCATCACACTTTT+TGG | + | chr1_1:6431228-6431247 | None:intergenic | 25.0% |
| !! | TCACAATGTAATTTTCCTAA+CGG | + | chr1_1:6431253-6431272 | None:intergenic | 25.0% |
| !! | CTATTGTATTTTCAGTCAAA+AGG | - | chr1_1:6431345-6431364 | Msa0003940:CDS | 25.0% |
| ! | TAATGAGATCTTCATTCTTA+GGG | - | chr1_1:6431571-6431590 | Msa0003940:CDS | 25.0% |
| !!! | TTTTTAGGACAAAATGTCAA+GGG | + | chr1_1:6431791-6431810 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGACAAAATGTCA+AGG | + | chr1_1:6431792-6431811 | None:intergenic | 25.0% |
| ! | ATTGAATTCTTTGTATTGAG+AGG | - | chr1_1:6431973-6431992 | Msa0003940:CDS | 25.0% |
| ! | TTGAATTCTTTGTATTGAGA+GGG | - | chr1_1:6431974-6431993 | Msa0003940:CDS | 25.0% |
| ! | TGTAATATTTGGCTACAATA+AGG | - | chr1_1:6432023-6432042 | Msa0003940:five_prime_UTR | 25.0% |
| TTTGTGAATATGTCATATGC+AGG | - | chr1_1:6429805-6429824 | Msa0003940:three_prime_UTR | 30.0% | |
| TATATTCAATAGGTGCACAA+TGG | + | chr1_1:6430579-6430598 | None:intergenic | 30.0% | |
| ! | GAGTTTGATTCGATTAGATT+GGG | - | chr1_1:6430662-6430681 | Msa0003940:intron | 30.0% |
| ! | ACAATTTTTCTATGAATCGG+AGG | - | chr1_1:6430854-6430873 | Msa0003940:intron | 30.0% |
| ! | CAATTTTTCTATGAATCGGA+GGG | - | chr1_1:6430855-6430874 | Msa0003940:intron | 30.0% |
| !! | ACATTCATAACTATTTCTGC+CGG | + | chr1_1:6431029-6431048 | None:intergenic | 30.0% |
| !! | CACATTGGATATTTTGGATT+TGG | + | chr1_1:6431054-6431073 | None:intergenic | 30.0% |
| TCCAAAATATCCAATGTGAT+AGG | - | chr1_1:6431056-6431075 | Msa0003940:intron | 30.0% | |
| ! | ACCTATCACATTGGATATTT+TGG | + | chr1_1:6431060-6431079 | None:intergenic | 30.0% |
| TACATTGGATTCGCAAAATA+TGG | - | chr1_1:6431134-6431153 | Msa0003940:CDS | 30.0% | |
| ACATTGGATTCGCAAAATAT+GGG | - | chr1_1:6431135-6431154 | Msa0003940:CDS | 30.0% | |
| TTATCGTTACACAACACTAT+TGG | - | chr1_1:6431176-6431195 | Msa0003940:CDS | 30.0% | |
| CTAATGAGATCTTCATTCTT+AGG | - | chr1_1:6431570-6431589 | Msa0003940:CDS | 30.0% | |
| TGAATTCTTTGTATTGAGAG+GGG | - | chr1_1:6431975-6431994 | Msa0003940:CDS | 30.0% | |
| TGGTTGGAGAATGTAATATT+TGG | - | chr1_1:6432012-6432031 | Msa0003940:exon | 30.0% | |
| ! | AAATTGATAGTACTTGGTGG+TGG | + | chr1_1:6429642-6429661 | None:intergenic | 35.0% |
| GCACTTCATCTATCAATTTC+AGG | - | chr1_1:6429676-6429695 | Msa0003940:three_prime_UTR | 35.0% | |
| ! | GAATTTTCCATCAGTGTCTT+GGG | + | chr1_1:6430013-6430032 | None:intergenic | 35.0% |
| ! | AGAATTTTCCATCAGTGTCT+TGG | + | chr1_1:6430014-6430033 | None:intergenic | 35.0% |
| GGAAAATTCTCATGTGTAAC+CGG | - | chr1_1:6430024-6430043 | Msa0003940:three_prime_UTR | 35.0% | |
| TTAGCCGAATTCACATTAGA+CGG | - | chr1_1:6430105-6430124 | Msa0003940:CDS | 35.0% | |
| !! | TTCGATGTTAGTCTTGTTGA+CGG | - | chr1_1:6430147-6430166 | Msa0003940:CDS | 35.0% |
| !! | ATGCGAAGCTTTTAATTCAC+CGG | - | chr1_1:6430320-6430339 | Msa0003940:intron | 35.0% |
| AAAGTAACTAACCTTGTGGT+TGG | + | chr1_1:6430516-6430535 | None:intergenic | 35.0% | |
| !! | TCCGAACTATTGGTTCATAA+GGG | + | chr1_1:6430644-6430663 | None:intergenic | 35.0% |
| ! | GGAGTTTGATTCGATTAGAT+TGG | - | chr1_1:6430661-6430680 | Msa0003940:intron | 35.0% |
| !! | TACTTTTTAGCCACCATGAT+TGG | - | chr1_1:6430917-6430936 | Msa0003940:intron | 35.0% |
| AATTGATTACCCACCAATCA+TGG | + | chr1_1:6430933-6430952 | None:intergenic | 35.0% | |
| ATTGCTTGCAATTGCAAACA+TGG | + | chr1_1:6430982-6431001 | None:intergenic | 35.0% | |
| TAGTAGGTGAAGCAACATAA+TGG | - | chr1_1:6431003-6431022 | Msa0003940:intron | 35.0% | |
| TGATGAACTTTATGACCGTT+AGG | - | chr1_1:6431235-6431254 | Msa0003940:CDS | 35.0% | |
| GCTTAGCAATGACAATACAA+TGG | - | chr1_1:6431423-6431442 | Msa0003940:CDS | 35.0% | |
| GACAATACAATGGTGTATGA+AGG | - | chr1_1:6431433-6431452 | Msa0003940:CDS | 35.0% | |
| AATACAATGGTGTATGAAGG+TGG | - | chr1_1:6431436-6431455 | Msa0003940:CDS | 35.0% | |
| GTGCATTATTAGCATCACTA+TGG | - | chr1_1:6431522-6431541 | Msa0003940:CDS | 35.0% | |
| GAAGATCTCATTAGAAGAGT+TGG | + | chr1_1:6431564-6431583 | None:intergenic | 35.0% | |
| ATGATTATGGTCCTAACTAC+AGG | + | chr1_1:6431605-6431624 | None:intergenic | 35.0% | |
| GTGGTCATATTGGATGATTA+TGG | + | chr1_1:6431618-6431637 | None:intergenic | 35.0% | |
| ACGTTTATTGGTCCAAATGT+GGG | - | chr1_1:6431644-6431663 | Msa0003940:CDS | 35.0% | |
| AACCATGTGTGAGTTAAGTA+TGG | - | chr1_1:6431706-6431725 | Msa0003940:CDS | 35.0% | |
| TTAAGTATGGCTCATGGATT+TGG | - | chr1_1:6431719-6431738 | Msa0003940:CDS | 35.0% | |
| TAGGACATGACTCATTTCAA+AGG | - | chr1_1:6431752-6431771 | Msa0003940:CDS | 35.0% | |
| CATGACTCATTTCAAAGGAA+AGG | - | chr1_1:6431757-6431776 | Msa0003940:CDS | 35.0% | |
| ATAAATGTATGGTGGTAGCT+TGG | + | chr1_1:6431830-6431849 | None:intergenic | 35.0% | |
| ATATAGGTGACGATGTAGTT+AGG | - | chr1_1:6431868-6431887 | Msa0003940:intron | 35.0% | |
| TATAGGTGACGATGTAGTTA+GGG | - | chr1_1:6431869-6431888 | Msa0003940:intron | 35.0% | |
| TGCCTAGTGATCTATAATCT+GGG | + | chr1_1:6431946-6431965 | None:intergenic | 35.0% | |
| ATGCCTAGTGATCTATAATC+TGG | + | chr1_1:6431947-6431966 | None:intergenic | 35.0% | |
| ACAAATGTGACTACACAGTG+TGG | - | chr1_1:6429857-6429876 | Msa0003940:three_prime_UTR | 40.0% | |
| CAGGGATTCTTTCAAATGCT+GGG | - | chr1_1:6429881-6429900 | Msa0003940:three_prime_UTR | 40.0% | |
| AGGGATTCTTTCAAATGCTG+GGG | - | chr1_1:6429882-6429901 | Msa0003940:three_prime_UTR | 40.0% | |
| AGAGCCGTCTAATGTGAATT+CGG | + | chr1_1:6430112-6430131 | None:intergenic | 40.0% | |
| GGATGTATCAGTGATCTCAA+CGG | - | chr1_1:6430231-6430250 | Msa0003940:CDS | 40.0% | |
| TTAGAGTGATGAGTGTGGAT+GGG | - | chr1_1:6430271-6430290 | Msa0003940:intron | 40.0% | |
| AAGCATAGCTATATGCACGT+GGG | + | chr1_1:6430425-6430444 | None:intergenic | 40.0% | |
| TAAGCATAGCTATATGCACG+TGG | + | chr1_1:6430426-6430445 | None:intergenic | 40.0% | |
| ! | ATTTGCACAAGTGAAAGTGC+TGG | + | chr1_1:6430460-6430479 | None:intergenic | 40.0% |
| TTTGTTCTTCTCCAACCACA+AGG | - | chr1_1:6430502-6430521 | Msa0003940:intron | 40.0% | |
| !! | CCGAACTATTGGTTCATAAG+GGG | + | chr1_1:6430643-6430662 | None:intergenic | 40.0% |
| CCCCTTATGAACCAATAGTT+CGG | - | chr1_1:6430640-6430659 | Msa0003940:intron | 40.0% | |
| !! | CTCCGAACTATTGGTTCATA+AGG | + | chr1_1:6430645-6430664 | None:intergenic | 40.0% |
| CGAATCAAACTCCGAACTAT+TGG | + | chr1_1:6430654-6430673 | None:intergenic | 40.0% | |
| ATGAACTCGGGTTCGATTAA+TGG | - | chr1_1:6430766-6430785 | Msa0003940:intron | 40.0% | |
| TGAACTCGGGTTCGATTAAT+GGG | - | chr1_1:6430767-6430786 | Msa0003940:intron | 40.0% | |
| GGTCGCGAGGTAAATTATAA+CGG | + | chr1_1:6430809-6430828 | None:intergenic | 40.0% | |
| !! | TTTTTAGCCACCATGATTGG+TGG | - | chr1_1:6430920-6430939 | Msa0003940:intron | 40.0% |
| ! | TTTTAGCCACCATGATTGGT+GGG | - | chr1_1:6430921-6430940 | Msa0003940:intron | 40.0% |
| GCAATTGCAAGCAATCTAGT+AGG | - | chr1_1:6430987-6431006 | Msa0003940:intron | 40.0% | |
| TTGGATTCGCAAAATATGGG+TGG | - | chr1_1:6431138-6431157 | Msa0003940:CDS | 40.0% | |
| TGTTGTGTAACGATAACCCT+TGG | + | chr1_1:6431172-6431191 | None:intergenic | 40.0% | |
| TTCAGTCAAAAGGCAACACA+AGG | - | chr1_1:6431355-6431374 | Msa0003940:CDS | 40.0% | |
| TCAGTCAAAAGGCAACACAA+GGG | - | chr1_1:6431356-6431375 | Msa0003940:CDS | 40.0% | |
| GTATTGTCATTGCTAAGCTG+AGG | + | chr1_1:6431421-6431440 | None:intergenic | 40.0% | |
| AGTTTGTGATTGGAGCACAT+GGG | + | chr1_1:6431497-6431516 | None:intergenic | 40.0% | |
| ! | TAGTTTGTGATTGGAGCACA+TGG | + | chr1_1:6431498-6431517 | None:intergenic | 40.0% |
| ! | TGCACGCAATAGTTTGTGAT+TGG | + | chr1_1:6431507-6431526 | None:intergenic | 40.0% |
| TTAGCATCACTATGGTCCTT+TGG | - | chr1_1:6431530-6431549 | Msa0003940:CDS | 40.0% | |
| ACGTGAATGTGTGGTCATAT+TGG | + | chr1_1:6431628-6431647 | None:intergenic | 40.0% | |
| GACCACACATTCACGTTTAT+TGG | - | chr1_1:6431632-6431651 | Msa0003940:CDS | 40.0% | |
| GACCAATAAACGTGAATGTG+TGG | + | chr1_1:6431637-6431656 | None:intergenic | 40.0% | |
| CACGTTTATTGGTCCAAATG+TGG | - | chr1_1:6431643-6431662 | Msa0003940:CDS | 40.0% | |
| TTTAAAGAGGGTCCCACATT+TGG | + | chr1_1:6431659-6431678 | None:intergenic | 40.0% | |
| AGCCATACTTAACTCACACA+TGG | + | chr1_1:6431711-6431730 | None:intergenic | 40.0% | |
| TGTGAGTTAAGTATGGCTCA+TGG | - | chr1_1:6431713-6431732 | Msa0003940:CDS | 40.0% | |
| !! | TGGATTTGGCCTTATTGACT+AGG | - | chr1_1:6431733-6431752 | Msa0003940:CDS | 40.0% |
| GAGTCATGTCCTAGTCAATA+AGG | + | chr1_1:6431745-6431764 | None:intergenic | 40.0% | |
| GACAAAATGTCAAGGGTTGT+AGG | + | chr1_1:6431784-6431803 | None:intergenic | 40.0% | |
| GTCCTAAAAAACCTTTGTGC+AGG | - | chr1_1:6431801-6431820 | Msa0003940:intron | 40.0% | |
| !!! | CTCCTGCACAAAGGTTTTTT+AGG | + | chr1_1:6431806-6431825 | None:intergenic | 40.0% |
| CTAAAAAACCTTTGTGCAGG+AGG | - | chr1_1:6431804-6431823 | Msa0003940:intron | 40.0% | |
| TCCCCAGATTATAGATCACT+AGG | - | chr1_1:6431941-6431960 | Msa0003940:intron | 40.0% | |
| GCCTAGTGATCTATAATCTG+GGG | + | chr1_1:6431945-6431964 | None:intergenic | 40.0% | |
| ATTCTTTGTATTGAGAGGGG+TGG | - | chr1_1:6431978-6431997 | Msa0003940:CDS | 40.0% | |
| TTCTTTGTATTGAGAGGGGT+GGG | - | chr1_1:6431979-6431998 | Msa0003940:CDS | 40.0% | |
| GGTGGGATTCATTTATTGGT+TGG | - | chr1_1:6431996-6432015 | Msa0003940:exon | 40.0% | |
| CCAGCATTTGAAAGAATCCC+TGG | + | chr1_1:6429883-6429902 | None:intergenic | 45.0% | |
| CCAGGGATTCTTTCAAATGC+TGG | - | chr1_1:6429880-6429899 | Msa0003940:three_prime_UTR | 45.0% | |
| !! | ACAGGCTTTGTTCTCCAAAC+CGG | - | chr1_1:6429922-6429941 | Msa0003940:three_prime_UTR | 45.0% |
| AAAGAGTTCTGCCCCAGAAA+CGG | + | chr1_1:6429987-6430006 | None:intergenic | 45.0% | |
| AAGGTTGAATGCTCTGGCAA+CGG | - | chr1_1:6430063-6430082 | Msa0003940:exon | 45.0% | |
| GTGAATTCGGCTAAAGTTGC+CGG | + | chr1_1:6430099-6430118 | None:intergenic | 45.0% | |
| GAATTCACATTAGACGGCTC+TGG | - | chr1_1:6430111-6430130 | Msa0003940:CDS | 45.0% | |
| TGGCGATAATTGCACTACCA+CGG | - | chr1_1:6430209-6430228 | Msa0003940:CDS | 45.0% | |
| CTTAGAGTGATGAGTGTGGA+TGG | - | chr1_1:6430270-6430289 | Msa0003940:intron | 45.0% | |
| ATGAGTGTGGATGGGAAAGA+CGG | - | chr1_1:6430279-6430298 | Msa0003940:intron | 45.0% | |
| GTAGAAGGTTTGCAAGTGTC+TGG | + | chr1_1:6430375-6430394 | None:intergenic | 45.0% | |
| ! | TAATTTAGAGTTCGGTCGCG+AGG | + | chr1_1:6430822-6430841 | None:intergenic | 45.0% |
| TGATTACCCACCAATCATGG+TGG | + | chr1_1:6430930-6430949 | None:intergenic | 45.0% | |
| AGGTGAAGCAACATAATGGC+CGG | - | chr1_1:6431007-6431026 | Msa0003940:intron | 45.0% | |
| TCCAATGTGATAGGTCTCCT+TGG | - | chr1_1:6431065-6431084 | Msa0003940:intron | 45.0% | |
| ACCAAGGAGACCTATCACAT+TGG | + | chr1_1:6431069-6431088 | None:intergenic | 45.0% | |
| ! | GGGCATTTTCTCCTGTAGTT+AGG | - | chr1_1:6431591-6431610 | Msa0003940:CDS | 45.0% |
| GAGGGGTGGGATTCATTTAT+TGG | - | chr1_1:6431992-6432011 | Msa0003940:CDS | 45.0% | |
| !! | AGCCTGTGGTTGGAAGTGTT+GGG | + | chr1_1:6429909-6429928 | None:intergenic | 50.0% |
| ! | AAGCCTGTGGTTGGAAGTGT+TGG | + | chr1_1:6429910-6429929 | None:intergenic | 50.0% |
| TGGAGAACAAAGCCTGTGGT+TGG | + | chr1_1:6429919-6429938 | None:intergenic | 50.0% | |
| GGTTTGGAGAACAAAGCCTG+TGG | + | chr1_1:6429923-6429942 | None:intergenic | 50.0% | |
| CTTTGCTCCCAAGACACTGA+TGG | - | chr1_1:6430003-6430022 | Msa0003940:three_prime_UTR | 50.0% | |
| TCATGTGTAACCGGCGATTG+TGG | - | chr1_1:6430033-6430052 | Msa0003940:three_prime_UTR | 50.0% | |
| TCCGGAAAGGTTGAATGCTC+TGG | - | chr1_1:6430057-6430076 | Msa0003940:exon | 50.0% | |
| ! | GCCAGAGCATTCAACCTTTC+CGG | + | chr1_1:6430061-6430080 | None:intergenic | 50.0% |
| AATTCGGCTAAAGTTGCCGG+CGG | + | chr1_1:6430096-6430115 | None:intergenic | 50.0% | |
| ! | TTCACATTAGACGGCTCTGG+TGG | - | chr1_1:6430114-6430133 | Msa0003940:CDS | 50.0% |
| ! | TCACATTAGACGGCTCTGGT+GGG | - | chr1_1:6430115-6430134 | Msa0003940:CDS | 50.0% |
| GGCGATAATTGCACTACCAC+GGG | - | chr1_1:6430210-6430229 | Msa0003940:CDS | 50.0% | |
| GAGATCACTGATACATCCCG+TGG | + | chr1_1:6430229-6430248 | None:intergenic | 50.0% | |
| CTCATCACTCTAAGCTCCGA+AGG | + | chr1_1:6430264-6430283 | None:intergenic | 50.0% | |
| GGAGCTTAGAGTGATGAGTG+TGG | - | chr1_1:6430266-6430285 | Msa0003940:CDS | 50.0% | |
| ATAGCTATATGCACGTGGGC+AGG | + | chr1_1:6430421-6430440 | None:intergenic | 50.0% | |
| TGTGATAGGTCTCCTTGGTC+AGG | - | chr1_1:6431070-6431089 | Msa0003940:intron | 50.0% | |
| GTCTCCTTGGTCAGGTACTA+GGG | - | chr1_1:6431078-6431097 | Msa0003940:intron | 50.0% | |
| GTCATTGCTAAGCTGAGGTG+AGG | + | chr1_1:6431416-6431435 | None:intergenic | 50.0% | |
| GCATCACTATGGTCCTTTGG+CGG | - | chr1_1:6431533-6431552 | Msa0003940:CDS | 50.0% | |
| TGTGACTACACAGTGTGGCC+AGG | - | chr1_1:6429862-6429881 | Msa0003940:three_prime_UTR | 55.0% | |
| GTGACTACACAGTGTGGCCA+GGG | - | chr1_1:6429863-6429882 | Msa0003940:three_prime_UTR | 55.0% | |
| GTCCCAACACTTCCAACCAC+AGG | - | chr1_1:6429904-6429923 | Msa0003940:three_prime_UTR | 55.0% | |
| !! | TCACCGGAGTATTGCTGCAG+CGG | - | chr1_1:6430336-6430355 | Msa0003940:intron | 55.0% |
| GGTCTCCTTGGTCAGGTACT+AGG | - | chr1_1:6431077-6431096 | Msa0003940:intron | 55.0% | |
| TGGTCCCTAGTACCTGACCA+AGG | + | chr1_1:6431085-6431104 | None:intergenic | 55.0% | |
| TATGGGTGGCACACATGCCA+AGG | - | chr1_1:6431152-6431171 | Msa0003940:CDS | 55.0% | |
| ATGGGTGGCACACATGCCAA+GGG | - | chr1_1:6431153-6431172 | Msa0003940:CDS | 55.0% | |
| TTGGAGCACATGGGTGCACA+TGG | + | chr1_1:6431488-6431507 | None:intergenic | 55.0% | |
| AGAGTTGGCACAACCGCCAA+AGG | + | chr1_1:6431549-6431568 | None:intergenic | 55.0% | |
| TAGCTTGGCCTCCTGCACAA+AGG | + | chr1_1:6431815-6431834 | None:intergenic | 55.0% | |
| ! | CAGTGGTGGTTTCGCCGGTT+TGG | + | chr1_1:6429939-6429958 | None:intergenic | 60.0% |
| GGTGACAGTGGTGGTTTCGC+CGG | + | chr1_1:6429944-6429963 | None:intergenic | 60.0% | |
| TGTCACCGCACCAGCCTCAT+GGG | - | chr1_1:6429957-6429976 | Msa0003940:three_prime_UTR | 60.0% | |
| GTAACCGGCGATTGTGGCTC+CGG | - | chr1_1:6430039-6430058 | Msa0003940:three_prime_UTR | 60.0% | |
| CTTTCCGGAGCCACAATCGC+CGG | + | chr1_1:6430046-6430065 | None:intergenic | 60.0% | |
| CCTATGCTAGTCGCCCCTCA+GGG | - | chr1_1:6430180-6430199 | Msa0003940:CDS | 60.0% | |
| TCTCAACGGCGCGTGTCCTT+CGG | - | chr1_1:6430245-6430264 | Msa0003940:CDS | 60.0% | |
| TATTGCTGCAGCGGCGCGTA+TGG | - | chr1_1:6430345-6430364 | Msa0003940:intron | 60.0% | |
| ATTGCTGCAGCGGCGCGTAT+GGG | - | chr1_1:6430346-6430365 | Msa0003940:intron | 60.0% | |
| TGAGGCTGGTGCGGTGACAG+TGG | + | chr1_1:6429956-6429975 | None:intergenic | 65.0% | |
| CTGTCACCGCACCAGCCTCA+TGG | - | chr1_1:6429956-6429975 | Msa0003940:three_prime_UTR | 65.0% | |
| GTCACCGCACCAGCCTCATG+GGG | - | chr1_1:6429958-6429977 | Msa0003940:three_prime_UTR | 65.0% | |
| CTCATGGGGCGGCCGTTTCT+GGG | - | chr1_1:6429972-6429991 | Msa0003940:three_prime_UTR | 65.0% | |
| TCATGGGGCGGCCGTTTCTG+GGG | - | chr1_1:6429973-6429992 | Msa0003940:three_prime_UTR | 65.0% | |
| CGGCGATTGTGGCTCCGGAA+AGG | - | chr1_1:6430044-6430063 | Msa0003940:three_prime_UTR | 65.0% | |
| GGCTAAAGTTGCCGGCGGTG+TGG | + | chr1_1:6430091-6430110 | None:intergenic | 65.0% | |
| GCCTATGCTAGTCGCCCCTC+AGG | - | chr1_1:6430179-6430198 | Msa0003940:CDS | 65.0% | |
| CCCTGAGGGGCGACTAGCAT+AGG | + | chr1_1:6430183-6430202 | None:intergenic | 65.0% | |
| ATGCTAGTCGCCCCTCAGGG+CGG | - | chr1_1:6430183-6430202 | Msa0003940:CDS | 65.0% | |
| TATCGCCAGAGCCGCCCTGA+GGG | + | chr1_1:6430197-6430216 | None:intergenic | 65.0% | |
| TTATCGCCAGAGCCGCCCTG+AGG | + | chr1_1:6430198-6430217 | None:intergenic | 65.0% | |
| GCGCCGCTGCAGCAATACTC+CGG | + | chr1_1:6430342-6430361 | None:intergenic | 65.0% | |
| GGCTGGTGCGGTGACAGTGG+TGG | + | chr1_1:6429953-6429972 | None:intergenic | 70.0% | |
| ACCGCACCAGCCTCATGGGG+CGG | - | chr1_1:6429961-6429980 | Msa0003940:three_prime_UTR | 70.0% | |
| AAACGGCCGCCCCATGAGGC+TGG | + | chr1_1:6429970-6429989 | None:intergenic | 70.0% | |
| CCAGAAACGGCCGCCCCATG+AGG | + | chr1_1:6429974-6429993 | None:intergenic | 70.0% | |
| CCTCATGGGGCGGCCGTTTC+TGG | - | chr1_1:6429971-6429990 | Msa0003940:three_prime_UTR | 70.0% | |
| TGGCAACGGAGCCACACCGC+CGG | - | chr1_1:6430077-6430096 | Msa0003940:CDS | 70.0% | |
| ATCGCCAGAGCCGCCCTGAG+GGG | + | chr1_1:6430196-6430215 | None:intergenic | 70.0% | |
| GCCGCCCCATGAGGCTGGTG+CGG | + | chr1_1:6429965-6429984 | None:intergenic | 75.0% | |
| ! | GTCGCCCCTCAGGGCGGCTC+TGG | - | chr1_1:6430189-6430208 | Msa0003940:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6429530 | 6432115 | 6429530 | ID=Msa0003940;Name=Msa0003940 |
| chr1_1 | mRNA | 6429530 | 6432115 | 6429530 | ID=Msa0003940-mRNA-1;Parent=Msa0003940;Name=Msa0003940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=101|1|1|1|0.5|0.66|3|542|325 |
| chr1_1 | exon | 6429530 | 6430285 | 6429530 | ID=Msa0003940-mRNA-1:exon:2147;Parent=Msa0003940-mRNA-1 |
| chr1_1 | exon | 6431122 | 6431818 | 6431122 | ID=Msa0003940-mRNA-1:exon:2146;Parent=Msa0003940-mRNA-1 |
| chr1_1 | exon | 6431948 | 6432115 | 6431948 | ID=Msa0003940-mRNA-1:exon:2145;Parent=Msa0003940-mRNA-1 |
| chr1_1 | five_prime_UTR | 6432015 | 6432115 | 6432015 | ID=Msa0003940-mRNA-1:five_prime_utr;Parent=Msa0003940-mRNA-1 |
| chr1_1 | CDS | 6431948 | 6432014 | 6431948 | ID=Msa0003940-mRNA-1:cds;Parent=Msa0003940-mRNA-1 |
| chr1_1 | CDS | 6431122 | 6431818 | 6431122 | ID=Msa0003940-mRNA-1:cds;Parent=Msa0003940-mRNA-1 |
| chr1_1 | CDS | 6430072 | 6430285 | 6430072 | ID=Msa0003940-mRNA-1:cds;Parent=Msa0003940-mRNA-1 |
| chr1_1 | three_prime_UTR | 6429530 | 6430071 | 6429530 | ID=Msa0003940-mRNA-1:three_prime_utr;Parent=Msa0003940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
