Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057900 | XP_003589504.2 | 96.636 | 327 | 5 | 2 | 1 | 325 | 1 | 323 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057900 | sp|A0A1P8B554|THLP1_ARATH | 59.608 | 255 | 91 | 4 | 3 | 251 | 9 | 257 | 9.40e-97 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057900 | A0A396JHC1 | 96.636 | 327 | 5 | 2 | 1 | 325 | 1 | 323 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003940 | Msa0057900 | 0.957574 | 1.953462e-115 | -8.615850e-47 |
| Msa0057900 | Msa0102590 | 0.956652 | 1.778433e-114 | -8.615850e-47 |
| Msa0057900 | Msa0147370 | 0.891287 | 4.558365e-74 | -8.615850e-47 |
| Msa0057900 | Msa0341060 | -0.802989 | 4.317586e-49 | -8.615850e-47 |
| Msa0057900 | Msa0385310 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
| Msa0057900 | Msa0430230 | 0.833590 | 4.885640e-56 | -8.615850e-47 |
| Msa0057900 | Msa0523110 | 0.808998 | 2.350734e-50 | -8.615850e-47 |
| Msa0057900 | Msa1078830 | 0.805400 | 1.359559e-49 | -8.615850e-47 |
| Msa0057900 | Msa1078890 | 0.823390 | 1.421248e-53 | -8.615850e-47 |
| Msa0057900 | Msa1383820 | 0.804557 | 2.039742e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057900 | MtrunA17_Chr1g0156711 | 96.636 | 327 | 5 | 2 | 1 | 325 | 1 | 323 | 0.0 | 638 |
| Msa0057900 | MtrunA17_Chr3g0142781 | 75.316 | 316 | 72 | 3 | 13 | 325 | 12 | 324 | 1.96e-171 | 478 |
| Msa0057900 | MtrunA17_Chr8g0352471 | 59.797 | 296 | 104 | 7 | 5 | 298 | 6 | 288 | 1.68e-119 | 347 |
| Msa0057900 | MtrunA17_Chr5g0405581 | 68.852 | 244 | 72 | 3 | 15 | 255 | 14 | 256 | 3.73e-118 | 342 |
| Msa0057900 | MtrunA17_Chr8g0371781 | 70.464 | 237 | 63 | 3 | 20 | 251 | 21 | 255 | 1.76e-116 | 338 |
| Msa0057900 | MtrunA17_Chr4g0037351 | 52.648 | 321 | 138 | 5 | 6 | 324 | 3 | 311 | 4.93e-114 | 333 |
| Msa0057900 | MtrunA17_Chr8g0357311 | 63.602 | 261 | 88 | 5 | 1 | 260 | 1 | 255 | 5.75e-113 | 328 |
| Msa0057900 | MtrunA17_Chr4g0037331 | 64.876 | 242 | 74 | 5 | 8 | 249 | 9 | 239 | 4.15e-104 | 308 |
| Msa0057900 | MtrunA17_Chr5g0405611 | 51.420 | 317 | 139 | 7 | 3 | 318 | 74 | 376 | 4.14e-99 | 297 |
| Msa0057900 | MtrunA17_Chr8g0371771 | 61.134 | 247 | 86 | 5 | 3 | 249 | 7 | 243 | 6.67e-99 | 294 |
| Msa0057900 | MtrunA17_Chr7g0265011 | 55.230 | 239 | 104 | 3 | 11 | 249 | 51 | 286 | 6.03e-95 | 283 |
| Msa0057900 | MtrunA17_Chr1g0180221 | 56.175 | 251 | 102 | 5 | 1 | 251 | 41 | 283 | 1.86e-87 | 264 |
| Msa0057900 | MtrunA17_Chr8g0351851 | 54.508 | 244 | 101 | 6 | 6 | 249 | 4 | 237 | 1.54e-86 | 259 |
| Msa0057900 | MtrunA17_Chr1g0180121 | 52.263 | 243 | 113 | 3 | 7 | 249 | 2 | 241 | 1.60e-86 | 260 |
| Msa0057900 | MtrunA17_Chr2g0312181 | 53.333 | 240 | 105 | 4 | 13 | 249 | 7 | 242 | 2.72e-86 | 259 |
| Msa0057900 | MtrunA17_Chr1g0179891 | 54.472 | 246 | 103 | 4 | 6 | 251 | 2 | 238 | 5.10e-86 | 258 |
| Msa0057900 | MtrunA17_Chr1g0180231 | 56.017 | 241 | 97 | 4 | 11 | 251 | 12 | 243 | 1.16e-85 | 258 |
| Msa0057900 | MtrunA17_Chr1g0179871 | 56.017 | 241 | 97 | 4 | 11 | 251 | 12 | 243 | 1.16e-85 | 258 |
| Msa0057900 | MtrunA17_Chr2g0311561 | 52.991 | 234 | 106 | 3 | 17 | 249 | 1 | 231 | 1.55e-85 | 259 |
| Msa0057900 | MtrunA17_Chr2g0311521 | 53.876 | 258 | 108 | 7 | 11 | 263 | 7 | 258 | 2.60e-85 | 277 |
| Msa0057900 | MtrunA17_Chr5g0428801 | 51.163 | 258 | 118 | 5 | 9 | 263 | 8 | 260 | 7.90e-85 | 258 |
| Msa0057900 | MtrunA17_Chr1g0180161 | 54.357 | 241 | 101 | 4 | 11 | 251 | 12 | 243 | 2.14e-84 | 255 |
| Msa0057900 | MtrunA17_Chr1g0179851 | 57.658 | 222 | 91 | 3 | 30 | 251 | 22 | 240 | 2.81e-83 | 251 |
| Msa0057900 | MtrunA17_Chr6g0482741 | 50.833 | 240 | 113 | 4 | 10 | 249 | 5 | 239 | 3.89e-80 | 243 |
| Msa0057900 | MtrunA17_Chr1g0154591 | 57.522 | 226 | 88 | 6 | 26 | 249 | 12 | 231 | 5.32e-80 | 243 |
| Msa0057900 | MtrunA17_Chr2g0311551 | 53.061 | 245 | 107 | 6 | 21 | 263 | 17 | 255 | 8.38e-80 | 262 |
| Msa0057900 | MtrunA17_Chr8g0392961 | 52.917 | 240 | 108 | 4 | 10 | 249 | 10 | 244 | 1.02e-79 | 243 |
| Msa0057900 | MtrunA17_Chr3g0141341 | 53.913 | 230 | 98 | 7 | 27 | 255 | 12 | 234 | 7.00e-74 | 227 |
| Msa0057900 | MtrunA17_Chr5g0424221 | 48.810 | 252 | 115 | 9 | 1 | 250 | 1 | 240 | 3.56e-69 | 217 |
| Msa0057900 | MtrunA17_Chr3g0112091 | 49.367 | 237 | 109 | 8 | 19 | 249 | 5 | 236 | 2.30e-67 | 211 |
| Msa0057900 | MtrunA17_Chr6g0452331 | 43.548 | 248 | 132 | 8 | 5 | 249 | 9 | 251 | 5.34e-64 | 203 |
| Msa0057900 | MtrunA17_Chr7g0239131 | 46.531 | 245 | 125 | 6 | 9 | 252 | 5 | 244 | 5.74e-64 | 202 |
| Msa0057900 | MtrunA17_Chr4g0031221 | 44.444 | 225 | 117 | 7 | 29 | 249 | 31 | 251 | 6.22e-61 | 195 |
| Msa0057900 | MtrunA17_Chr5g0406771 | 53.672 | 177 | 77 | 3 | 15 | 188 | 1 | 175 | 7.27e-60 | 189 |
| Msa0057900 | MtrunA17_Chr2g0311531 | 47.162 | 229 | 91 | 8 | 22 | 249 | 22 | 221 | 1.83e-59 | 191 |
| Msa0057900 | MtrunA17_Chr2g0311501 | 48.108 | 185 | 87 | 7 | 69 | 249 | 2 | 181 | 3.58e-53 | 173 |
| Msa0057900 | MtrunA17_Chr5g0397831 | 40.964 | 249 | 118 | 8 | 8 | 249 | 9 | 235 | 5.68e-50 | 166 |
| Msa0057900 | MtrunA17_Chr5g0397821 | 40.000 | 225 | 111 | 7 | 26 | 249 | 23 | 224 | 1.74e-46 | 157 |
| Msa0057900 | MtrunA17_Chr8g0386341 | 39.918 | 243 | 118 | 9 | 10 | 249 | 30 | 247 | 4.57e-46 | 156 |
| Msa0057900 | MtrunA17_Chr2g0309611 | 31.048 | 248 | 155 | 6 | 10 | 248 | 9 | 249 | 7.18e-38 | 135 |
| Msa0057900 | MtrunA17_Chr1g0179911 | 32.000 | 250 | 149 | 7 | 7 | 251 | 6 | 239 | 3.08e-32 | 120 |
| Msa0057900 | MtrunA17_Chr8g0386351 | 43.262 | 141 | 68 | 6 | 5 | 142 | 40 | 171 | 2.20e-27 | 106 |
| Msa0057900 | MtrunA17_Chr1g0180181 | 58.333 | 84 | 34 | 1 | 168 | 251 | 18 | 100 | 2.99e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057900 | AT1G75800.1 | 63.609 | 327 | 95 | 4 | 13 | 321 | 9 | 329 | 1.82e-147 | 418 |
| Msa0057900 | AT1G20030.2 | 66.557 | 305 | 96 | 3 | 23 | 325 | 16 | 316 | 6.21e-144 | 409 |
| Msa0057900 | AT1G20030.1 | 66.337 | 303 | 96 | 3 | 25 | 325 | 1 | 299 | 1.30e-142 | 405 |
| Msa0057900 | AT4G36010.1 | 63.736 | 273 | 91 | 4 | 23 | 289 | 19 | 289 | 9.41e-118 | 342 |
| Msa0057900 | AT4G36010.2 | 63.736 | 273 | 91 | 4 | 23 | 289 | 19 | 289 | 9.41e-118 | 342 |
| Msa0057900 | AT4G38670.3 | 61.446 | 249 | 95 | 1 | 10 | 257 | 6 | 254 | 2.33e-110 | 322 |
| Msa0057900 | AT4G38670.1 | 61.446 | 249 | 95 | 1 | 10 | 257 | 6 | 254 | 2.33e-110 | 322 |
| Msa0057900 | AT4G38670.2 | 62.605 | 238 | 88 | 1 | 21 | 257 | 1 | 238 | 4.84e-108 | 316 |
| Msa0057900 | AT2G17860.1 | 62.857 | 245 | 86 | 4 | 13 | 253 | 9 | 252 | 5.37e-107 | 313 |
| Msa0057900 | AT4G38660.1 | 62.109 | 256 | 88 | 5 | 17 | 272 | 20 | 266 | 4.81e-102 | 303 |
| Msa0057900 | AT4G38660.2 | 62.302 | 252 | 86 | 5 | 21 | 272 | 2 | 244 | 5.84e-101 | 300 |
| Msa0057900 | AT4G24180.1 | 56.631 | 279 | 109 | 4 | 3 | 275 | 9 | 281 | 6.65e-99 | 294 |
| Msa0057900 | AT4G24180.6 | 59.608 | 255 | 91 | 4 | 3 | 251 | 9 | 257 | 9.55e-98 | 290 |
| Msa0057900 | AT4G24180.2 | 57.196 | 271 | 104 | 4 | 11 | 275 | 12 | 276 | 9.78e-98 | 291 |
| Msa0057900 | AT5G38280.1 | 54.373 | 263 | 113 | 4 | 13 | 269 | 11 | 272 | 3.51e-97 | 301 |
| Msa0057900 | AT5G38280.2 | 54.373 | 263 | 113 | 4 | 13 | 269 | 11 | 272 | 5.31e-97 | 301 |
| Msa0057900 | AT4G24180.5 | 60.324 | 247 | 86 | 4 | 11 | 251 | 12 | 252 | 2.01e-96 | 286 |
| Msa0057900 | AT4G24180.3 | 59.307 | 231 | 83 | 3 | 10 | 234 | 16 | 241 | 8.50e-89 | 269 |
| Msa0057900 | AT4G24180.4 | 58.696 | 230 | 84 | 3 | 11 | 234 | 12 | 236 | 8.27e-88 | 266 |
| Msa0057900 | AT1G19320.1 | 57.831 | 249 | 89 | 9 | 8 | 250 | 9 | 247 | 3.21e-87 | 262 |
| Msa0057900 | AT1G75030.1 | 58.442 | 231 | 88 | 7 | 26 | 255 | 23 | 246 | 5.43e-84 | 254 |
| Msa0057900 | AT1G75050.1 | 56.962 | 237 | 97 | 5 | 13 | 249 | 11 | 242 | 6.74e-84 | 254 |
| Msa0057900 | AT1G75040.1 | 56.148 | 244 | 99 | 6 | 6 | 249 | 3 | 238 | 9.43e-84 | 253 |
| Msa0057900 | AT1G18250.1 | 54.464 | 224 | 97 | 4 | 26 | 249 | 20 | 238 | 7.11e-80 | 243 |
| Msa0057900 | AT5G24620.1 | 51.639 | 244 | 111 | 5 | 11 | 249 | 9 | 250 | 7.91e-80 | 249 |
| Msa0057900 | AT1G18250.2 | 54.464 | 224 | 97 | 4 | 26 | 249 | 21 | 239 | 8.37e-80 | 243 |
| Msa0057900 | AT1G73620.1 | 55.357 | 224 | 95 | 4 | 26 | 249 | 41 | 259 | 1.14e-79 | 243 |
| Msa0057900 | AT5G24620.4 | 48.669 | 263 | 117 | 6 | 3 | 249 | 45 | 305 | 1.15e-79 | 250 |
| Msa0057900 | AT5G24620.3 | 48.669 | 263 | 117 | 6 | 3 | 249 | 66 | 326 | 1.35e-79 | 251 |
| Msa0057900 | AT1G77700.3 | 51.304 | 230 | 92 | 9 | 26 | 251 | 60 | 273 | 3.13e-70 | 221 |
| Msa0057900 | AT1G77700.2 | 51.327 | 226 | 98 | 8 | 26 | 251 | 60 | 273 | 1.18e-69 | 219 |
| Msa0057900 | AT1G77700.1 | 51.327 | 226 | 98 | 8 | 26 | 251 | 88 | 301 | 1.40e-69 | 221 |
| Msa0057900 | AT2G28790.2 | 47.107 | 242 | 120 | 7 | 12 | 249 | 36 | 273 | 3.77e-67 | 212 |
| Msa0057900 | AT2G28790.1 | 47.107 | 242 | 120 | 7 | 12 | 249 | 11 | 248 | 4.77e-67 | 211 |
| Msa0057900 | AT1G70250.1 | 47.083 | 240 | 114 | 6 | 25 | 258 | 143 | 375 | 2.77e-65 | 220 |
| Msa0057900 | AT4G36000.2 | 62.644 | 174 | 53 | 5 | 103 | 274 | 1 | 164 | 9.47e-65 | 203 |
| Msa0057900 | AT4G36000.1 | 62.644 | 174 | 53 | 5 | 103 | 274 | 1 | 164 | 9.47e-65 | 203 |
| Msa0057900 | AT4G18253.1 | 43.443 | 244 | 128 | 4 | 13 | 255 | 9 | 243 | 1.36e-64 | 204 |
| Msa0057900 | AT5G40020.1 | 46.256 | 227 | 117 | 5 | 26 | 251 | 27 | 249 | 3.24e-63 | 201 |
| Msa0057900 | AT4G18250.1 | 44.030 | 268 | 139 | 6 | 13 | 277 | 42 | 301 | 3.48e-62 | 209 |
| Msa0057900 | AT5G02140.1 | 44.177 | 249 | 133 | 6 | 14 | 260 | 7 | 251 | 2.15e-61 | 197 |
| Msa0057900 | AT5G02140.2 | 45.798 | 238 | 123 | 6 | 14 | 249 | 7 | 240 | 1.17e-60 | 194 |
| Msa0057900 | AT4G11650.1 | 39.506 | 243 | 122 | 8 | 8 | 249 | 4 | 222 | 2.33e-49 | 165 |
| Msa0057900 | AT5G24620.2 | 56.667 | 120 | 47 | 3 | 134 | 249 | 15 | 133 | 1.45e-37 | 136 |
| Msa0057900 | AT2G24810.1 | 62.195 | 82 | 26 | 3 | 170 | 250 | 116 | 193 | 8.78e-27 | 104 |
Find 135 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATGGGGCGGCCGTTTC+TGG | -0.083846 | 1_2:-14118451 | Msa0057900:CDS |
| CTAATGAGATCTTCATTCTT+AGG | 0.152586 | 1_2:-14116847 | Msa0057900:exon |
| GACCACACATTCACGTTTAT+TGG | 0.178738 | 1_2:-14116785 | Msa0057900:three_prime_UTR |
| GCACTTCATCTATCAATTTC+AGG | 0.196637 | 1_2:-14118746 | Msa0057900:intron |
| GCCAGAGCATTCAACCTTTC+CGG | 0.211647 | 1_2:+14118364 | None:intergenic |
| GAGAGGTGGGATTCATTTAT+TGG | 0.224947 | 1_2:-14116426 | Msa0057900:three_prime_UTR |
| CTCATGGGGCGGCCGTTTCT+GGG | 0.253028 | 1_2:-14118450 | Msa0057900:CDS |
| TGGTTGGAGGATGTAATATT+TGG | 0.263722 | 1_2:-14116406 | Msa0057900:three_prime_UTR |
| TTAAGTATGGCTCATGGATT+TGG | 0.313740 | 1_2:-14116698 | Msa0057900:three_prime_UTR |
| CCAGGGATTCTTTCAAATGC+TGG | 0.316773 | 1_2:-14118542 | Msa0057900:CDS |
| ATTTATACATGTAGCAATAT+AGG | 0.317837 | 1_2:-14116565 | Msa0057900:three_prime_UTR |
| TGTAATATTTGGCTACAATA+AGG | 0.334675 | 1_2:-14116395 | Msa0057900:three_prime_UTR |
| TTAAAAGAGGGTCCCACATT+TGG | 0.342183 | 1_2:+14116761 | None:intergenic |
| AACAATTGAGAATAAGTAGA+AGG | 0.345262 | 1_2:+14118035 | None:intergenic |
| CAGGGATTCTTTCAAATGCT+GGG | 0.347178 | 1_2:-14118541 | Msa0057900:CDS |
| GAGTCATGTCCTAGTCAATA+AGG | 0.357507 | 1_2:+14116675 | None:intergenic |
| ATATAGGTGACGATGTAGTT+AGG | 0.361985 | 1_2:-14116549 | Msa0057900:three_prime_UTR |
| CAGTGGTGGTTTCGCCGGTT+TGG | 0.373152 | 1_2:+14118486 | None:intergenic |
| TATTGCTGCAGCGGCGCGTA+TGG | 0.373787 | 1_2:-14118077 | Msa0057900:CDS |
| TCATATCTTACATATACATA+TGG | 0.390366 | 1_2:-14118810 | Msa0057900:exon |
| TAATGAGATCTTCATTCTTA+GGG | 0.392642 | 1_2:-14116846 | Msa0057900:three_prime_UTR |
| TTCGATGTTAGTCTTGTTGA+CGG | 0.393312 | 1_2:-14118275 | Msa0057900:CDS |
| GGAAAATTCTCATGTGTAAC+CGG | 0.404051 | 1_2:-14118398 | Msa0057900:CDS |
| TGCACGCAAAAGTTTGTGAT+TGG | 0.405228 | 1_2:+14116913 | None:intergenic |
| GTCGCCCCTCAGGGCGGCTC+TGG | 0.409338 | 1_2:-14118233 | Msa0057900:CDS |
| TCTCAACGGCGCGTGTCCTT+CGG | 0.414761 | 1_2:-14118177 | Msa0057900:CDS |
| TTAGCATCACTATGGTCCTT+TGG | 0.416286 | 1_2:-14116887 | Msa0057900:CDS |
| GCCTATGCTAGTCGCCCCTC+AGG | 0.418663 | 1_2:-14118243 | Msa0057900:CDS |
| TCCGGAAAGGTTGAATGCTC+TGG | 0.437194 | 1_2:-14118365 | Msa0057900:CDS |
| GTGAATTCGGCTAAAGTTGC+CGG | 0.439691 | 1_2:+14118326 | None:intergenic |
| TGTATAAATAAATAAATGTA+TGG | 0.451975 | 1_2:+14116579 | None:intergenic |
| ACGTGAATGTGTGGTCATAT+TGG | 0.457357 | 1_2:+14116792 | None:intergenic |
| AACCATGTGTGAGTTAAGTA+TGG | 0.464049 | 1_2:-14116711 | Msa0057900:three_prime_UTR |
| AGAGCCGTCTAATGTGAATT+CGG | 0.464663 | 1_2:+14118313 | None:intergenic |
| TGTCACCGCACCAGCCTCAT+GGG | 0.466682 | 1_2:-14118465 | Msa0057900:CDS |
| GTGCATTATTAGCATCACTA+TGG | 0.467599 | 1_2:-14116895 | Msa0057900:CDS |
| ACAGGCTTTGTTCTCCAAAC+CGG | 0.470298 | 1_2:-14118500 | Msa0057900:CDS |
| GTAACCGGCGATTGTGGCTC+CGG | 0.470556 | 1_2:-14118383 | Msa0057900:CDS |
| GTAGAAGGTTTGCAAGTGTC+TGG | 0.470850 | 1_2:+14118050 | None:intergenic |
| GGTGGGATTCATTTATTGGT+TGG | 0.475523 | 1_2:-14116422 | Msa0057900:three_prime_UTR |
| CACGTTTATTGGTCCAAATG+TGG | 0.476217 | 1_2:-14116774 | Msa0057900:three_prime_UTR |
| TGCCTAGTGATCTATAACAT+GGG | 0.480574 | 1_2:+14116475 | None:intergenic |
| AAACGGCCGCCCCATGAGGC+TGG | 0.484136 | 1_2:+14118455 | None:intergenic |
| CTGTCACCGCACCAGCCTCA+TGG | 0.485359 | 1_2:-14118466 | Msa0057900:CDS |
| CCAGCATTTGAAAGAATCCC+TGG | 0.493036 | 1_2:+14118542 | None:intergenic |
| GGGATTCATTTATTGGTTGG+AGG | 0.494925 | 1_2:-14116419 | Msa0057900:three_prime_UTR |
| TGTGACTACACAGTGTGGCC+AGG | 0.496467 | 1_2:-14118560 | Msa0057900:CDS |
| GGTGACAGTGGTGGTTTCGC+CGG | 0.497671 | 1_2:+14118481 | None:intergenic |
| TGGATTTGGCCTTATTGACT+AGG | 0.503947 | 1_2:-14116684 | Msa0057900:three_prime_UTR |
| TATAGGTGACGATGTAGTTA+GGG | 0.505321 | 1_2:-14116548 | Msa0057900:three_prime_UTR |
| AAAGAGTTCTGCCCCAGAAA+CGG | 0.509995 | 1_2:+14118438 | None:intergenic |
| TCATGGGGCGGCCGTTTCTG+GGG | 0.511165 | 1_2:-14118449 | Msa0057900:CDS |
| ATAAATGTATGGTGGTAGCT+TGG | 0.512014 | 1_2:+14116590 | None:intergenic |
| GAAGATCTCATTAGAAGAGT+TGG | 0.513485 | 1_2:+14116856 | None:intergenic |
| TTATTTGTATTGAGAGAGGT+GGG | 0.513606 | 1_2:-14116439 | Msa0057900:three_prime_UTR |
| GCATCACTATGGTCCTTTGG+CGG | 0.514552 | 1_2:-14116884 | Msa0057900:CDS |
| GACAAAATGTCAAGGGTTGT+AGG | 0.515639 | 1_2:+14116636 | None:intergenic |
| AAAGTAACTAACCTTGTGGT+TGG | 0.518082 | 1_2:+14117909 | None:intergenic |
| AAGCCTGTGGTTGGAAGTGT+TGG | 0.519230 | 1_2:+14118515 | None:intergenic |
| TATCGCCAGAGCCGCCCTGA+GGG | 0.521997 | 1_2:+14118228 | None:intergenic |
| TGAATTATTTGTATTGAGAG+AGG | 0.524351 | 1_2:-14116443 | Msa0057900:three_prime_UTR |
| CCCTGAGGGGCGACTAGCAT+AGG | 0.525025 | 1_2:+14118242 | None:intergenic |
| TCATGTGTAACCGGCGATTG+TGG | 0.527231 | 1_2:-14118389 | Msa0057900:CDS |
| GAATTCACATTAGACGGCTC+TGG | 0.528881 | 1_2:-14118311 | Msa0057900:CDS |
| CTTTGCTCCCAAGACACTGA+TGG | 0.532188 | 1_2:-14118419 | Msa0057900:CDS |
| TTCACATTAGACGGCTCTGG+TGG | 0.532251 | 1_2:-14118308 | Msa0057900:CDS |
| ATTGCTGCAGCGGCGCGTAT+GGG | 0.534091 | 1_2:-14118076 | Msa0057900:CDS |
| GGCGATAATTGCACTACCAC+GGG | 0.537099 | 1_2:-14118212 | Msa0057900:CDS |
| AAGTCAAACTAATTTAAAAG+AGG | 0.538242 | 1_2:+14116748 | None:intergenic |
| TCCCCATGTTATAGATCACT+AGG | 0.540797 | 1_2:-14116477 | Msa0057900:three_prime_UTR |
| GGCTAAAGTTGCCGGCGGTG+TGG | 0.544415 | 1_2:+14118334 | None:intergenic |
| TTCAGTCAAAAGGCAACACA+AGG | 0.545590 | 1_2:-14117062 | Msa0057900:intron |
| ATAGCTATATGCACGTGGGC+AGG | 0.548259 | 1_2:+14118004 | None:intergenic |
| ACGTTTATTGGTCCAAATGT+GGG | 0.552340 | 1_2:-14116773 | Msa0057900:three_prime_UTR |
| CTTAGAGTGATGAGTGTGGA+TGG | 0.554333 | 1_2:-14118152 | Msa0057900:CDS |
| TGGAGAACAAAGCCTGTGGT+TGG | 0.555388 | 1_2:+14118506 | None:intergenic |
| CCTATGCTAGTCGCCCCTCA+GGG | 0.555587 | 1_2:-14118242 | Msa0057900:CDS |
| ATTATTTGTATTGAGAGAGG+TGG | 0.556930 | 1_2:-14116440 | Msa0057900:three_prime_UTR |
| AGTCAAACTAATTTAAAAGA+GGG | 0.558752 | 1_2:+14116749 | None:intergenic |
| AGGGATTCTTTCAAATGCTG+GGG | 0.560190 | 1_2:-14118540 | Msa0057900:CDS |
| GCCGCCCCATGAGGCTGGTG+CGG | 0.562230 | 1_2:+14118460 | None:intergenic |
| GCGCCGCTGCAGCAATACTC+CGG | 0.562265 | 1_2:+14118083 | None:intergenic |
| CTTTCCGGAGCCACAATCGC+CGG | 0.563498 | 1_2:+14118379 | None:intergenic |
| CGGCGATTGTGGCTCCGGAA+AGG | 0.566510 | 1_2:-14118378 | Msa0057900:CDS |
| AAGTTTGTGATTGGAGCACA+TGG | 0.568630 | 1_2:+14116922 | None:intergenic |
| GTGACTACACAGTGTGGCCA+GGG | 0.569936 | 1_2:-14118559 | Msa0057900:CDS |
| GTGGTCATATTGGATGATTA+TGG | 0.572627 | 1_2:+14116802 | None:intergenic |
| GTCCCAACACTTCCAACCAC+AGG | 0.572652 | 1_2:-14118518 | Msa0057900:CDS |
| AAGGTTGAATGCTCTGGCAA+CGG | 0.576244 | 1_2:-14118359 | Msa0057900:CDS |
| TTAGCCGAATTCACATTAGA+CGG | 0.576825 | 1_2:-14118317 | Msa0057900:CDS |
| TGGCAACGGAGCCACACCGC+CGG | 0.578628 | 1_2:-14118345 | Msa0057900:CDS |
| ACCGCACCAGCCTCATGGGG+CGG | 0.586044 | 1_2:-14118461 | Msa0057900:CDS |
| ATGCCTAGTGATCTATAACA+TGG | 0.590564 | 1_2:+14116474 | None:intergenic |
| CATGACTCATTTCAAAGGAA+AGG | 0.591738 | 1_2:-14116660 | Msa0057900:three_prime_UTR |
| ATGAGTGTGGATGGGAAAGA+CGG | 0.592613 | 1_2:-14118143 | Msa0057900:CDS |
| TGGCGATAATTGCACTACCA+CGG | 0.593427 | 1_2:-14118213 | Msa0057900:CDS |
| GACAATACAATGGTGTATGA+AGG | 0.596541 | 1_2:-14116984 | Msa0057900:CDS |
| CCAGAAACGGCCGCCCCATG+AGG | 0.596649 | 1_2:+14118451 | None:intergenic |
| TAGGACATGACTCATTTCAA+AGG | 0.597781 | 1_2:-14116665 | Msa0057900:three_prime_UTR |
| ATAAATAAATAAATGTATGG+TGG | 0.599349 | 1_2:+14116582 | None:intergenic |
| TCACCGGAGTATTGCTGCAG+CGG | 0.602026 | 1_2:-14118086 | Msa0057900:CDS |
| AGAGTTGGCACAACCGCCAA+AGG | 0.605702 | 1_2:+14116871 | None:intergenic |
| ATTTGCACAAGTGAAAGTGC+TGG | 0.609107 | 1_2:+14117965 | None:intergenic |
| TTGGAGCACATGGGTGCACA+TGG | 0.612628 | 1_2:+14116932 | None:intergenic |
| TTATCGCCAGAGCCGCCCTG+AGG | 0.617214 | 1_2:+14118227 | None:intergenic |
| AGCCTGTGGTTGGAAGTGTT+GGG | 0.621679 | 1_2:+14118516 | None:intergenic |
| TGTGAGTTAAGTATGGCTCA+TGG | 0.623058 | 1_2:-14116704 | Msa0057900:three_prime_UTR |
| TAGCTTGGCCTCCTGCACAA+AGG | 0.623226 | 1_2:+14116605 | None:intergenic |
| TCACATTAGACGGCTCTGGT+GGG | 0.623574 | 1_2:-14118307 | Msa0057900:CDS |
| TGAGGCTGGTGCGGTGACAG+TGG | 0.623668 | 1_2:+14118469 | None:intergenic |
| ATCGCCAGAGCCGCCCTGAG+GGG | 0.629555 | 1_2:+14118229 | None:intergenic |
| GTCATTGCTAAGCTGAGGTG+AGG | 0.630131 | 1_2:+14117004 | None:intergenic |
| TTAGAGTGATGAGTGTGGAT+GGG | 0.630518 | 1_2:-14118151 | Msa0057900:CDS |
| GTCACCGCACCAGCCTCATG+GGG | 0.632870 | 1_2:-14118464 | Msa0057900:CDS |
| GCCTAGTGATCTATAACATG+GGG | 0.634628 | 1_2:+14116476 | None:intergenic |
| GGCTGGTGCGGTGACAGTGG+TGG | 0.635446 | 1_2:+14118472 | None:intergenic |
| TTTGTTCTTCTCCAACCACA+AGG | 0.638050 | 1_2:-14117920 | Msa0057900:intron |
| CTCATCACTCTAAGCTCCGA+AGG | 0.638536 | 1_2:+14118161 | None:intergenic |
| AAATTGATAGTACTTGGTGG+TGG | 0.656416 | 1_2:+14118783 | None:intergenic |
| TAAGCATAGCTATATGCACG+TGG | 0.665332 | 1_2:+14117999 | None:intergenic |
| GACCAATAAACGTGAATGTG+TGG | 0.671423 | 1_2:+14116783 | None:intergenic |
| GGATGTATCAGTGATCTCAA+CGG | 0.673930 | 1_2:-14118191 | Msa0057900:CDS |
| GCTTAGCAATGACAATACAA+TGG | 0.678768 | 1_2:-14116994 | Msa0057900:CDS |
| GAGATCACTGATACATCCCG+TGG | 0.679790 | 1_2:+14118196 | None:intergenic |
| ATGCTAGTCGCCCCTCAGGG+CGG | 0.689357 | 1_2:-14118239 | Msa0057900:CDS |
| AGCCATACTTAACTCACACA+TGG | 0.689446 | 1_2:+14116709 | None:intergenic |
| GTATTGTCATTGCTAAGCTG+AGG | 0.695826 | 1_2:+14116999 | None:intergenic |
| GGTTTGGAGAACAAAGCCTG+TGG | 0.698538 | 1_2:+14118502 | None:intergenic |
| AATTCGGCTAAAGTTGCCGG+CGG | 0.706419 | 1_2:+14118329 | None:intergenic |
| AATACAATGGTGTATGAAGG+TGG | 0.707551 | 1_2:-14116981 | Msa0057900:CDS |
| TCAGTCAAAAGGCAACACAA+GGG | 0.710852 | 1_2:-14117061 | Msa0057900:intron |
| AAGCATAGCTATATGCACGT+GGG | 0.721806 | 1_2:+14118000 | None:intergenic |
| GGAGCTTAGAGTGATGAGTG+TGG | 0.722376 | 1_2:-14118156 | Msa0057900:CDS |
| ACAAATGTGACTACACAGTG+TGG | 0.729139 | 1_2:-14118565 | Msa0057900:CDS |
| AGTTTGTGATTGGAGCACAT+GGG | 0.786907 | 1_2:+14116923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAATAAATAAATGTA+TGG | + | chr1_2:14118639-14118658 | None:intergenic | 10.0% |
| !!! | ATTGTCAATTTTTTTTTTAA+CGG | - | chr1_2:14118867-14118886 | Msa0057900:five_prime_UTR | 10.0% |
| !!! | AACTATTAAATGTTTGTTTT+TGG | + | chr1_2:14116524-14116543 | None:intergenic | 15.0% |
| !! | TAAGATTGATTATATTCAAT+AGG | + | chr1_2:14117382-14117401 | None:intergenic | 15.0% |
| !! | ATAAATAAATAAATGTATGG+TGG | + | chr1_2:14118636-14118655 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTTTGTATAAAAG+TGG | + | chr1_2:14116355-14116374 | None:intergenic | 20.0% |
| !! | AAGATATGAGAAAAAGAAAT+GGG | + | chr1_2:14116394-14116413 | None:intergenic | 20.0% |
| !! | TAAGATATGAGAAAAAGAAA+TGG | + | chr1_2:14116395-14116414 | None:intergenic | 20.0% |
| !! | TCATATCTTACATATACATA+TGG | - | chr1_2:14116405-14116424 | Msa0057900:three_prime_UTR | 20.0% |
| !!! | ATGAAAAAATTGATAGTACT+TGG | + | chr1_2:14116441-14116460 | None:intergenic | 20.0% |
| !!! | TTTTTACGGTTATTATTTTG+AGG | + | chr1_2:14117344-14117363 | None:intergenic | 20.0% |
| !! | TTGAATATAATCAATCTTAC+CGG | - | chr1_2:14117383-14117402 | Msa0057900:intron | 20.0% |
| !! | TCATATTAGTTAAGATTTAC+CGG | + | chr1_2:14117405-14117424 | None:intergenic | 20.0% |
| !! | GACAAAATTCATTAATCATT+TGG | + | chr1_2:14117522-14117541 | None:intergenic | 20.0% |
| !! | AATAAATTGTTCAATGAACT+CGG | - | chr1_2:14117546-14117565 | Msa0057900:intron | 20.0% |
| !!! | AGAACAATTTTTCTATGAAT+CGG | - | chr1_2:14117644-14117663 | Msa0057900:intron | 20.0% |
| !!! | AATATAATTGGTTCTAGATA+TGG | + | chr1_2:14117898-14117917 | None:intergenic | 20.0% |
| !! | TGTACATCAATCAATATAAT+TGG | + | chr1_2:14117910-14117929 | None:intergenic | 20.0% |
| !!! | TTATATTGATTGATGTACAT+TGG | - | chr1_2:14117911-14117930 | Msa0057900:intron | 20.0% |
| !! | AGTCAAACTAATTTAAAAGA+GGG | + | chr1_2:14118469-14118488 | None:intergenic | 20.0% |
| !! | AAGTCAAACTAATTTAAAAG+AGG | + | chr1_2:14118470-14118489 | None:intergenic | 20.0% |
| !! | ATTTATACATGTAGCAATAT+AGG | - | chr1_2:14118650-14118669 | Msa0057900:intron | 20.0% |
| !! | AAAAAATTGATAGTACTTGG+TGG | + | chr1_2:14116438-14116457 | None:intergenic | 25.0% |
| ! | AACAATTGAGAATAAGTAGA+AGG | + | chr1_2:14117183-14117202 | None:intergenic | 25.0% |
| ! | AAATAAAGTAACTAACCTTG+TGG | + | chr1_2:14117313-14117332 | None:intergenic | 25.0% |
| !!! | GCACAATGGTAAATTTTTTA+CGG | + | chr1_2:14117358-14117377 | None:intergenic | 25.0% |
| ! | ATAAATTGTTCAATGAACTC+GGG | - | chr1_2:14117547-14117566 | Msa0057900:intron | 25.0% |
| ! | TTCAATAGAAATTGATGCAA+AGG | - | chr1_2:14117745-14117764 | Msa0057900:intron | 25.0% |
| ! | TCAATAGAAATTGATGCAAA+GGG | - | chr1_2:14117746-14117765 | Msa0057900:intron | 25.0% |
| !! | ATAAAGTTCATCACACTTTT+TGG | + | chr1_2:14118026-14118045 | None:intergenic | 25.0% |
| !! | TCACAATGTAATTTTCCTAA+CGG | + | chr1_2:14118051-14118070 | None:intergenic | 25.0% |
| !! | CTATTGTATTTTCAGTCAAA+AGG | - | chr1_2:14118143-14118162 | Msa0057900:CDS | 25.0% |
| ! | TAATGAGATCTTCATTCTTA+GGG | - | chr1_2:14118369-14118388 | Msa0057900:CDS | 25.0% |
| !!! | TTTTTAGGACAAAATGTCAA+GGG | + | chr1_2:14118589-14118608 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGACAAAATGTCA+AGG | + | chr1_2:14118590-14118609 | None:intergenic | 25.0% |
| ! | TGAATTATTTGTATTGAGAG+AGG | - | chr1_2:14118772-14118791 | Msa0057900:CDS | 25.0% |
| ! | TGTAATATTTGGCTACAATA+AGG | - | chr1_2:14118820-14118839 | Msa0057900:five_prime_UTR | 25.0% |
| ATTGTGAATATGTCATATGC+AGG | - | chr1_2:14116598-14116617 | Msa0057900:three_prime_UTR | 30.0% | |
| TATATTCAATAGGTGCACAA+TGG | + | chr1_2:14117372-14117391 | None:intergenic | 30.0% | |
| ! | GAGTTTGATTCGATTAGATT+GGG | - | chr1_2:14117455-14117474 | Msa0057900:intron | 30.0% |
| ! | CTGTAAGGTAATTTAGAGTT+CGG | + | chr1_2:14117623-14117642 | None:intergenic | 30.0% |
| AGAAAAATTGTTCTGCTGTA+AGG | + | chr1_2:14117638-14117657 | None:intergenic | 30.0% | |
| ! | ACAATTTTTCTATGAATCGG+AGG | - | chr1_2:14117647-14117666 | Msa0057900:intron | 30.0% |
| ! | CAATTTTTCTATGAATCGGA+GGG | - | chr1_2:14117648-14117667 | Msa0057900:intron | 30.0% |
| !! | ACATTCATAACTATTTCTGC+CGG | + | chr1_2:14117822-14117841 | None:intergenic | 30.0% |
| !! | CACATTGGATATTTTGGATT+TGG | + | chr1_2:14117847-14117866 | None:intergenic | 30.0% |
| TCCAAAATATCCAATGTGAT+AGG | - | chr1_2:14117849-14117868 | Msa0057900:intron | 30.0% | |
| ! | ACCTATCACATTGGATATTT+TGG | + | chr1_2:14117853-14117872 | None:intergenic | 30.0% |
| TACATTGGATTCGCAAAATA+TGG | - | chr1_2:14117926-14117945 | Msa0057900:CDS | 30.0% | |
| ACATTGGATTCGCAAAATAT+GGG | - | chr1_2:14117927-14117946 | Msa0057900:CDS | 30.0% | |
| TTATCGTTACACAACACTAT+TGG | - | chr1_2:14117974-14117993 | Msa0057900:CDS | 30.0% | |
| CTAATGAGATCTTCATTCTT+AGG | - | chr1_2:14118368-14118387 | Msa0057900:CDS | 30.0% | |
| ATTATTTGTATTGAGAGAGG+TGG | - | chr1_2:14118775-14118794 | Msa0057900:CDS | 30.0% | |
| TTATTTGTATTGAGAGAGGT+GGG | - | chr1_2:14118776-14118795 | Msa0057900:CDS | 30.0% | |
| ! | AAATTGATAGTACTTGGTGG+TGG | + | chr1_2:14116435-14116454 | None:intergenic | 35.0% |
| GCACTTCATCTATCAATTTC+AGG | - | chr1_2:14116469-14116488 | Msa0057900:three_prime_UTR | 35.0% | |
| ! | GAATTTTCCATCAGTGTCTT+GGG | + | chr1_2:14116806-14116825 | None:intergenic | 35.0% |
| ! | AGAATTTTCCATCAGTGTCT+TGG | + | chr1_2:14116807-14116826 | None:intergenic | 35.0% |
| GGAAAATTCTCATGTGTAAC+CGG | - | chr1_2:14116817-14116836 | Msa0057900:three_prime_UTR | 35.0% | |
| TTAGCCGAATTCACATTAGA+CGG | - | chr1_2:14116898-14116917 | Msa0057900:CDS | 35.0% | |
| !! | TTCGATGTTAGTCTTGTTGA+CGG | - | chr1_2:14116940-14116959 | Msa0057900:CDS | 35.0% |
| !! | ATGCGAAGCTTTTAATTCAC+CGG | - | chr1_2:14117113-14117132 | Msa0057900:intron | 35.0% |
| AAAGTAACTAACCTTGTGGT+TGG | + | chr1_2:14117309-14117328 | None:intergenic | 35.0% | |
| !! | TCCGAACTATTGGTTCATAA+GGG | + | chr1_2:14117437-14117456 | None:intergenic | 35.0% |
| ! | GGAGTTTGATTCGATTAGAT+TGG | - | chr1_2:14117454-14117473 | Msa0057900:intron | 35.0% |
| GGTCGCAAGGTAAATTATAA+CGG | + | chr1_2:14117602-14117621 | None:intergenic | 35.0% | |
| AATTGATTACCCACCAATCA+TGG | + | chr1_2:14117726-14117745 | None:intergenic | 35.0% | |
| ATTGCTTGCAATTGCAAACA+TGG | + | chr1_2:14117775-14117794 | None:intergenic | 35.0% | |
| TAGTAGGTGAAGCAACATAA+TGG | - | chr1_2:14117796-14117815 | Msa0057900:intron | 35.0% | |
| TGATGAACTTTATGACCGTT+AGG | - | chr1_2:14118033-14118052 | Msa0057900:CDS | 35.0% | |
| GCTTAGCAATGACAATACAA+TGG | - | chr1_2:14118221-14118240 | Msa0057900:CDS | 35.0% | |
| GACAATACAATGGTGTATGA+AGG | - | chr1_2:14118231-14118250 | Msa0057900:CDS | 35.0% | |
| AATACAATGGTGTATGAAGG+TGG | - | chr1_2:14118234-14118253 | Msa0057900:CDS | 35.0% | |
| GTGCATTATTAGCATCACTA+TGG | - | chr1_2:14118320-14118339 | Msa0057900:CDS | 35.0% | |
| GAAGATCTCATTAGAAGAGT+TGG | + | chr1_2:14118362-14118381 | None:intergenic | 35.0% | |
| GTGGTCATATTGGATGATTA+TGG | + | chr1_2:14118416-14118435 | None:intergenic | 35.0% | |
| ACGTTTATTGGTCCAAATGT+GGG | - | chr1_2:14118442-14118461 | Msa0057900:CDS | 35.0% | |
| AACCATGTGTGAGTTAAGTA+TGG | - | chr1_2:14118504-14118523 | Msa0057900:CDS | 35.0% | |
| TTAAGTATGGCTCATGGATT+TGG | - | chr1_2:14118517-14118536 | Msa0057900:CDS | 35.0% | |
| TAGGACATGACTCATTTCAA+AGG | - | chr1_2:14118550-14118569 | Msa0057900:CDS | 35.0% | |
| CATGACTCATTTCAAAGGAA+AGG | - | chr1_2:14118555-14118574 | Msa0057900:CDS | 35.0% | |
| ATAAATGTATGGTGGTAGCT+TGG | + | chr1_2:14118628-14118647 | None:intergenic | 35.0% | |
| ATATAGGTGACGATGTAGTT+AGG | - | chr1_2:14118666-14118685 | Msa0057900:intron | 35.0% | |
| TATAGGTGACGATGTAGTTA+GGG | - | chr1_2:14118667-14118686 | Msa0057900:intron | 35.0% | |
| TGCCTAGTGATCTATAACAT+GGG | + | chr1_2:14118743-14118762 | None:intergenic | 35.0% | |
| ATGCCTAGTGATCTATAACA+TGG | + | chr1_2:14118744-14118763 | None:intergenic | 35.0% | |
| TGGTTGGAGGATGTAATATT+TGG | - | chr1_2:14118809-14118828 | Msa0057900:exon | 35.0% | |
| ACAAATGTGACTACACAGTG+TGG | - | chr1_2:14116650-14116669 | Msa0057900:three_prime_UTR | 40.0% | |
| CAGGGATTCTTTCAAATGCT+GGG | - | chr1_2:14116674-14116693 | Msa0057900:three_prime_UTR | 40.0% | |
| AGGGATTCTTTCAAATGCTG+GGG | - | chr1_2:14116675-14116694 | Msa0057900:three_prime_UTR | 40.0% | |
| AGAGCCGTCTAATGTGAATT+CGG | + | chr1_2:14116905-14116924 | None:intergenic | 40.0% | |
| GGATGTATCAGTGATCTCAA+CGG | - | chr1_2:14117024-14117043 | Msa0057900:CDS | 40.0% | |
| TTAGAGTGATGAGTGTGGAT+GGG | - | chr1_2:14117064-14117083 | Msa0057900:intron | 40.0% | |
| AAGCATAGCTATATGCACGT+GGG | + | chr1_2:14117218-14117237 | None:intergenic | 40.0% | |
| TAAGCATAGCTATATGCACG+TGG | + | chr1_2:14117219-14117238 | None:intergenic | 40.0% | |
| ! | ATTTGCACAAGTGAAAGTGC+TGG | + | chr1_2:14117253-14117272 | None:intergenic | 40.0% |
| TTTGTTCTTCTCCAACCACA+AGG | - | chr1_2:14117295-14117314 | Msa0057900:intron | 40.0% | |
| !! | CCGAACTATTGGTTCATAAG+GGG | + | chr1_2:14117436-14117455 | None:intergenic | 40.0% |
| CCCCTTATGAACCAATAGTT+CGG | - | chr1_2:14117433-14117452 | Msa0057900:intron | 40.0% | |
| !! | CTCCGAACTATTGGTTCATA+AGG | + | chr1_2:14117438-14117457 | None:intergenic | 40.0% |
| CGAATCAAACTCCGAACTAT+TGG | + | chr1_2:14117447-14117466 | None:intergenic | 40.0% | |
| ATGAACTCGGGTTCGATTAA+TGG | - | chr1_2:14117559-14117578 | Msa0057900:intron | 40.0% | |
| TGAACTCGGGTTCGATTAAT+GGG | - | chr1_2:14117560-14117579 | Msa0057900:intron | 40.0% | |
| ! | TAATTTAGAGTTCGGTCGCA+AGG | + | chr1_2:14117615-14117634 | None:intergenic | 40.0% |
| !! | TGCTTTTTAGCCACCATGAT+TGG | - | chr1_2:14117710-14117729 | Msa0057900:intron | 40.0% |
| !! | TTTTTAGCCACCATGATTGG+TGG | - | chr1_2:14117713-14117732 | Msa0057900:intron | 40.0% |
| ! | TTTTAGCCACCATGATTGGT+GGG | - | chr1_2:14117714-14117733 | Msa0057900:intron | 40.0% |
| GCAATTGCAAGCAATCTAGT+AGG | - | chr1_2:14117780-14117799 | Msa0057900:intron | 40.0% | |
| TTGGATTCGCAAAATATGGG+TGG | - | chr1_2:14117930-14117949 | Msa0057900:CDS | 40.0% | |
| TTCAGTCAAAAGGCAACACA+AGG | - | chr1_2:14118153-14118172 | Msa0057900:CDS | 40.0% | |
| TCAGTCAAAAGGCAACACAA+GGG | - | chr1_2:14118154-14118173 | Msa0057900:CDS | 40.0% | |
| GTATTGTCATTGCTAAGCTG+AGG | + | chr1_2:14118219-14118238 | None:intergenic | 40.0% | |
| AGTTTGTGATTGGAGCACAT+GGG | + | chr1_2:14118295-14118314 | None:intergenic | 40.0% | |
| AAGTTTGTGATTGGAGCACA+TGG | + | chr1_2:14118296-14118315 | None:intergenic | 40.0% | |
| TGCACGCAAAAGTTTGTGAT+TGG | + | chr1_2:14118305-14118324 | None:intergenic | 40.0% | |
| TTAGCATCACTATGGTCCTT+TGG | - | chr1_2:14118328-14118347 | Msa0057900:CDS | 40.0% | |
| !! | GGGCATTTTCTAGTGTAGTT+AGG | - | chr1_2:14118389-14118408 | Msa0057900:CDS | 40.0% |
| ACGTGAATGTGTGGTCATAT+TGG | + | chr1_2:14118426-14118445 | None:intergenic | 40.0% | |
| GACCACACATTCACGTTTAT+TGG | - | chr1_2:14118430-14118449 | Msa0057900:CDS | 40.0% | |
| GACCAATAAACGTGAATGTG+TGG | + | chr1_2:14118435-14118454 | None:intergenic | 40.0% | |
| CACGTTTATTGGTCCAAATG+TGG | - | chr1_2:14118441-14118460 | Msa0057900:CDS | 40.0% | |
| TTAAAAGAGGGTCCCACATT+TGG | + | chr1_2:14118457-14118476 | None:intergenic | 40.0% | |
| AGCCATACTTAACTCACACA+TGG | + | chr1_2:14118509-14118528 | None:intergenic | 40.0% | |
| TGTGAGTTAAGTATGGCTCA+TGG | - | chr1_2:14118511-14118530 | Msa0057900:CDS | 40.0% | |
| !! | TGGATTTGGCCTTATTGACT+AGG | - | chr1_2:14118531-14118550 | Msa0057900:CDS | 40.0% |
| GAGTCATGTCCTAGTCAATA+AGG | + | chr1_2:14118543-14118562 | None:intergenic | 40.0% | |
| GACAAAATGTCAAGGGTTGT+AGG | + | chr1_2:14118582-14118601 | None:intergenic | 40.0% | |
| GTCCTAAAAAACCTTTGTGC+AGG | - | chr1_2:14118599-14118618 | Msa0057900:intron | 40.0% | |
| !!! | CTCCTGCACAAAGGTTTTTT+AGG | + | chr1_2:14118604-14118623 | None:intergenic | 40.0% |
| CTAAAAAACCTTTGTGCAGG+AGG | - | chr1_2:14118602-14118621 | Msa0057900:intron | 40.0% | |
| TCCCCATGTTATAGATCACT+AGG | - | chr1_2:14118738-14118757 | Msa0057900:intron | 40.0% | |
| GCCTAGTGATCTATAACATG+GGG | + | chr1_2:14118742-14118761 | None:intergenic | 40.0% | |
| GAGAGGTGGGATTCATTTAT+TGG | - | chr1_2:14118789-14118808 | Msa0057900:CDS | 40.0% | |
| GGTGGGATTCATTTATTGGT+TGG | - | chr1_2:14118793-14118812 | Msa0057900:CDS | 40.0% | |
| ! | GGGATTCATTTATTGGTTGG+AGG | - | chr1_2:14118796-14118815 | Msa0057900:exon | 40.0% |
| CCAGCATTTGAAAGAATCCC+TGG | + | chr1_2:14116676-14116695 | None:intergenic | 45.0% | |
| CCAGGGATTCTTTCAAATGC+TGG | - | chr1_2:14116673-14116692 | Msa0057900:three_prime_UTR | 45.0% | |
| !! | ACAGGCTTTGTTCTCCAAAC+CGG | - | chr1_2:14116715-14116734 | Msa0057900:three_prime_UTR | 45.0% |
| AAAGAGTTCTGCCCCAGAAA+CGG | + | chr1_2:14116780-14116799 | None:intergenic | 45.0% | |
| AAGGTTGAATGCTCTGGCAA+CGG | - | chr1_2:14116856-14116875 | Msa0057900:exon | 45.0% | |
| GTGAATTCGGCTAAAGTTGC+CGG | + | chr1_2:14116892-14116911 | None:intergenic | 45.0% | |
| GAATTCACATTAGACGGCTC+TGG | - | chr1_2:14116904-14116923 | Msa0057900:CDS | 45.0% | |
| TGGCGATAATTGCACTACCA+CGG | - | chr1_2:14117002-14117021 | Msa0057900:CDS | 45.0% | |
| CTTAGAGTGATGAGTGTGGA+TGG | - | chr1_2:14117063-14117082 | Msa0057900:intron | 45.0% | |
| ATGAGTGTGGATGGGAAAGA+CGG | - | chr1_2:14117072-14117091 | Msa0057900:intron | 45.0% | |
| GTAGAAGGTTTGCAAGTGTC+TGG | + | chr1_2:14117168-14117187 | None:intergenic | 45.0% | |
| TGATTACCCACCAATCATGG+TGG | + | chr1_2:14117723-14117742 | None:intergenic | 45.0% | |
| AGGTGAAGCAACATAATGGC+CGG | - | chr1_2:14117800-14117819 | Msa0057900:intron | 45.0% | |
| TCCAATGTGATAGGTCTCCT+TGG | - | chr1_2:14117858-14117877 | Msa0057900:intron | 45.0% | |
| ACCAAGGAGACCTATCACAT+TGG | + | chr1_2:14117862-14117881 | None:intergenic | 45.0% | |
| !! | AGCCTGTGGTTGGAAGTGTT+GGG | + | chr1_2:14116702-14116721 | None:intergenic | 50.0% |
| ! | AAGCCTGTGGTTGGAAGTGT+TGG | + | chr1_2:14116703-14116722 | None:intergenic | 50.0% |
| TGGAGAACAAAGCCTGTGGT+TGG | + | chr1_2:14116712-14116731 | None:intergenic | 50.0% | |
| GGTTTGGAGAACAAAGCCTG+TGG | + | chr1_2:14116716-14116735 | None:intergenic | 50.0% | |
| CTTTGCTCCCAAGACACTGA+TGG | - | chr1_2:14116796-14116815 | Msa0057900:three_prime_UTR | 50.0% | |
| TCATGTGTAACCGGCGATTG+TGG | - | chr1_2:14116826-14116845 | Msa0057900:three_prime_UTR | 50.0% | |
| TCCGGAAAGGTTGAATGCTC+TGG | - | chr1_2:14116850-14116869 | Msa0057900:exon | 50.0% | |
| ! | GCCAGAGCATTCAACCTTTC+CGG | + | chr1_2:14116854-14116873 | None:intergenic | 50.0% |
| AATTCGGCTAAAGTTGCCGG+CGG | + | chr1_2:14116889-14116908 | None:intergenic | 50.0% | |
| ! | TTCACATTAGACGGCTCTGG+TGG | - | chr1_2:14116907-14116926 | Msa0057900:CDS | 50.0% |
| ! | TCACATTAGACGGCTCTGGT+GGG | - | chr1_2:14116908-14116927 | Msa0057900:CDS | 50.0% |
| GGCGATAATTGCACTACCAC+GGG | - | chr1_2:14117003-14117022 | Msa0057900:CDS | 50.0% | |
| GAGATCACTGATACATCCCG+TGG | + | chr1_2:14117022-14117041 | None:intergenic | 50.0% | |
| CTCATCACTCTAAGCTCCGA+AGG | + | chr1_2:14117057-14117076 | None:intergenic | 50.0% | |
| GGAGCTTAGAGTGATGAGTG+TGG | - | chr1_2:14117059-14117078 | Msa0057900:CDS | 50.0% | |
| ATAGCTATATGCACGTGGGC+AGG | + | chr1_2:14117214-14117233 | None:intergenic | 50.0% | |
| TGTGATAGGTCTCCTTGGTC+AGG | - | chr1_2:14117863-14117882 | Msa0057900:intron | 50.0% | |
| GTCTCCTTGGTCAGGTACTA+GGG | - | chr1_2:14117871-14117890 | Msa0057900:intron | 50.0% | |
| GTAACGATAACCCTTGCCCT+TGG | + | chr1_2:14117964-14117983 | None:intergenic | 50.0% | |
| GTCATTGCTAAGCTGAGGTG+AGG | + | chr1_2:14118214-14118233 | None:intergenic | 50.0% | |
| GCATCACTATGGTCCTTTGG+CGG | - | chr1_2:14118331-14118350 | Msa0057900:CDS | 50.0% | |
| TGTGACTACACAGTGTGGCC+AGG | - | chr1_2:14116655-14116674 | Msa0057900:three_prime_UTR | 55.0% | |
| GTGACTACACAGTGTGGCCA+GGG | - | chr1_2:14116656-14116675 | Msa0057900:three_prime_UTR | 55.0% | |
| GTCCCAACACTTCCAACCAC+AGG | - | chr1_2:14116697-14116716 | Msa0057900:three_prime_UTR | 55.0% | |
| !! | TCACCGGAGTATTGCTGCAG+CGG | - | chr1_2:14117129-14117148 | Msa0057900:intron | 55.0% |
| GGTCTCCTTGGTCAGGTACT+AGG | - | chr1_2:14117870-14117889 | Msa0057900:intron | 55.0% | |
| TGGTCCCTAGTACCTGACCA+AGG | + | chr1_2:14117878-14117897 | None:intergenic | 55.0% | |
| TATGGGTGGCACACATGCCA+AGG | - | chr1_2:14117944-14117963 | Msa0057900:CDS | 55.0% | |
| ATGGGTGGCACACATGCCAA+GGG | - | chr1_2:14117945-14117964 | Msa0057900:CDS | 55.0% | |
| TTGGAGCACATGGGTGCACA+TGG | + | chr1_2:14118286-14118305 | None:intergenic | 55.0% | |
| AGAGTTGGCACAACCGCCAA+AGG | + | chr1_2:14118347-14118366 | None:intergenic | 55.0% | |
| TAGCTTGGCCTCCTGCACAA+AGG | + | chr1_2:14118613-14118632 | None:intergenic | 55.0% | |
| ! | CAGTGGTGGTTTCGCCGGTT+TGG | + | chr1_2:14116732-14116751 | None:intergenic | 60.0% |
| GGTGACAGTGGTGGTTTCGC+CGG | + | chr1_2:14116737-14116756 | None:intergenic | 60.0% | |
| TGTCACCGCACCAGCCTCAT+GGG | - | chr1_2:14116750-14116769 | Msa0057900:three_prime_UTR | 60.0% | |
| GTAACCGGCGATTGTGGCTC+CGG | - | chr1_2:14116832-14116851 | Msa0057900:three_prime_UTR | 60.0% | |
| CTTTCCGGAGCCACAATCGC+CGG | + | chr1_2:14116839-14116858 | None:intergenic | 60.0% | |
| CCTATGCTAGTCGCCCCTCA+GGG | - | chr1_2:14116973-14116992 | Msa0057900:CDS | 60.0% | |
| TCTCAACGGCGCGTGTCCTT+CGG | - | chr1_2:14117038-14117057 | Msa0057900:CDS | 60.0% | |
| TATTGCTGCAGCGGCGCGTA+TGG | - | chr1_2:14117138-14117157 | Msa0057900:intron | 60.0% | |
| ATTGCTGCAGCGGCGCGTAT+GGG | - | chr1_2:14117139-14117158 | Msa0057900:intron | 60.0% | |
| TGGCACACATGCCAAGGGCA+AGG | - | chr1_2:14117950-14117969 | Msa0057900:CDS | 60.0% | |
| GGCACACATGCCAAGGGCAA+GGG | - | chr1_2:14117951-14117970 | Msa0057900:CDS | 60.0% | |
| TGAGGCTGGTGCGGTGACAG+TGG | + | chr1_2:14116749-14116768 | None:intergenic | 65.0% | |
| CTGTCACCGCACCAGCCTCA+TGG | - | chr1_2:14116749-14116768 | Msa0057900:three_prime_UTR | 65.0% | |
| GTCACCGCACCAGCCTCATG+GGG | - | chr1_2:14116751-14116770 | Msa0057900:three_prime_UTR | 65.0% | |
| CTCATGGGGCGGCCGTTTCT+GGG | - | chr1_2:14116765-14116784 | Msa0057900:three_prime_UTR | 65.0% | |
| TCATGGGGCGGCCGTTTCTG+GGG | - | chr1_2:14116766-14116785 | Msa0057900:three_prime_UTR | 65.0% | |
| CGGCGATTGTGGCTCCGGAA+AGG | - | chr1_2:14116837-14116856 | Msa0057900:three_prime_UTR | 65.0% | |
| GGCTAAAGTTGCCGGCGGTG+TGG | + | chr1_2:14116884-14116903 | None:intergenic | 65.0% | |
| GCCTATGCTAGTCGCCCCTC+AGG | - | chr1_2:14116972-14116991 | Msa0057900:CDS | 65.0% | |
| CCCTGAGGGGCGACTAGCAT+AGG | + | chr1_2:14116976-14116995 | None:intergenic | 65.0% | |
| ATGCTAGTCGCCCCTCAGGG+CGG | - | chr1_2:14116976-14116995 | Msa0057900:CDS | 65.0% | |
| TATCGCCAGAGCCGCCCTGA+GGG | + | chr1_2:14116990-14117009 | None:intergenic | 65.0% | |
| TTATCGCCAGAGCCGCCCTG+AGG | + | chr1_2:14116991-14117010 | None:intergenic | 65.0% | |
| GCGCCGCTGCAGCAATACTC+CGG | + | chr1_2:14117135-14117154 | None:intergenic | 65.0% | |
| GGCTGGTGCGGTGACAGTGG+TGG | + | chr1_2:14116746-14116765 | None:intergenic | 70.0% | |
| ACCGCACCAGCCTCATGGGG+CGG | - | chr1_2:14116754-14116773 | Msa0057900:three_prime_UTR | 70.0% | |
| AAACGGCCGCCCCATGAGGC+TGG | + | chr1_2:14116763-14116782 | None:intergenic | 70.0% | |
| CCAGAAACGGCCGCCCCATG+AGG | + | chr1_2:14116767-14116786 | None:intergenic | 70.0% | |
| CCTCATGGGGCGGCCGTTTC+TGG | - | chr1_2:14116764-14116783 | Msa0057900:three_prime_UTR | 70.0% | |
| TGGCAACGGAGCCACACCGC+CGG | - | chr1_2:14116870-14116889 | Msa0057900:CDS | 70.0% | |
| ATCGCCAGAGCCGCCCTGAG+GGG | + | chr1_2:14116989-14117008 | None:intergenic | 70.0% | |
| GCCGCCCCATGAGGCTGGTG+CGG | + | chr1_2:14116758-14116777 | None:intergenic | 75.0% | |
| ! | GTCGCCCCTCAGGGCGGCTC+TGG | - | chr1_2:14116982-14117001 | Msa0057900:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 14116325 | 14118912 | 14116325 | ID=Msa0057900;Name=Msa0057900 |
| chr1_2 | mRNA | 14116325 | 14118912 | 14116325 | ID=Msa0057900-mRNA-1;Parent=Msa0057900;Name=Msa0057900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=99|1|1|1|1|1|3|541|325 |
| chr1_2 | exon | 14116325 | 14117079 | 14116325 | ID=Msa0057900-mRNA-1:exon:5653;Parent=Msa0057900-mRNA-1 |
| chr1_2 | exon | 14117921 | 14118617 | 14117921 | ID=Msa0057900-mRNA-1:exon:5652;Parent=Msa0057900-mRNA-1 |
| chr1_2 | exon | 14118747 | 14118912 | 14118747 | ID=Msa0057900-mRNA-1:exon:5651;Parent=Msa0057900-mRNA-1 |
| chr1_2 | five_prime_UTR | 14118814 | 14118912 | 14118814 | ID=Msa0057900-mRNA-1:five_prime_utr;Parent=Msa0057900-mRNA-1 |
| chr1_2 | CDS | 14118747 | 14118813 | 14118747 | ID=Msa0057900-mRNA-1:cds;Parent=Msa0057900-mRNA-1 |
| chr1_2 | CDS | 14117921 | 14118617 | 14117921 | ID=Msa0057900-mRNA-1:cds;Parent=Msa0057900-mRNA-1 |
| chr1_2 | CDS | 14116866 | 14117079 | 14116866 | ID=Msa0057900-mRNA-1:cds;Parent=Msa0057900-mRNA-1 |
| chr1_2 | three_prime_UTR | 14116325 | 14116865 | 14116325 | ID=Msa0057900-mRNA-1:three_prime_utr;Parent=Msa0057900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
