AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102590 MtrunA17_Chr1g0156711 96.636 327 5 2 1 325 1 323 0.0 639
Msa0102590 MtrunA17_Chr3g0142781 74.688 320 74 4 10 325 8 324 4.66e-171 478
Msa0102590 MtrunA17_Chr8g0352471 56.875 320 119 9 5 318 6 312 5.35e-120 348
Msa0102590 MtrunA17_Chr5g0405581 68.852 244 72 3 15 255 14 256 4.50e-118 342
Msa0102590 MtrunA17_Chr8g0371781 70.464 237 63 3 20 251 21 255 1.68e-116 338
Msa0102590 MtrunA17_Chr4g0037351 53.271 321 136 5 6 324 3 311 2.38e-115 336
Msa0102590 MtrunA17_Chr8g0357311 66.397 247 77 4 15 260 14 255 1.26e-112 327
Msa0102590 MtrunA17_Chr4g0037331 64.876 242 74 5 8 249 9 239 3.45e-104 308
Msa0102590 MtrunA17_Chr5g0405611 51.420 317 139 7 3 318 74 376 1.93e-99 298
Msa0102590 MtrunA17_Chr8g0371771 61.134 247 86 5 3 249 7 243 2.37e-99 295
Msa0102590 MtrunA17_Chr7g0265011 55.230 239 104 3 11 249 51 286 5.97e-95 283
Msa0102590 MtrunA17_Chr1g0180221 56.574 251 101 5 1 251 41 283 4.57e-88 265
Msa0102590 MtrunA17_Chr1g0180121 52.675 243 112 3 7 249 2 241 5.03e-87 261
Msa0102590 MtrunA17_Chr8g0351851 54.508 244 101 6 6 249 4 237 1.04e-86 260
Msa0102590 MtrunA17_Chr2g0312181 53.333 240 105 4 13 249 7 242 2.47e-86 259
Msa0102590 MtrunA17_Chr1g0180231 54.762 252 104 5 1 251 1 243 6.86e-86 258
Msa0102590 MtrunA17_Chr1g0179871 54.762 252 104 5 1 251 1 243 6.86e-86 258
Msa0102590 MtrunA17_Chr1g0179891 54.472 246 103 4 6 251 2 238 9.49e-86 258
Msa0102590 MtrunA17_Chr2g0311561 52.991 234 106 3 17 249 1 231 1.56e-85 259
Msa0102590 MtrunA17_Chr2g0311521 53.876 258 108 7 11 263 7 258 1.71e-85 277
Msa0102590 MtrunA17_Chr5g0428801 51.163 258 118 5 9 263 8 260 6.43e-85 258
Msa0102590 MtrunA17_Chr1g0180161 52.846 246 113 3 6 251 1 243 8.31e-85 256
Msa0102590 MtrunA17_Chr1g0179851 57.658 222 91 3 30 251 22 240 2.50e-83 252
Msa0102590 MtrunA17_Chr6g0482741 50.833 240 113 4 10 249 5 239 2.66e-80 244
Msa0102590 MtrunA17_Chr1g0154591 57.522 226 88 6 26 249 12 231 4.01e-80 243
Msa0102590 MtrunA17_Chr8g0392961 52.917 240 108 4 10 249 10 244 7.29e-80 243
Msa0102590 MtrunA17_Chr2g0311551 53.061 245 107 6 21 263 17 255 8.13e-80 262
Msa0102590 MtrunA17_Chr3g0141341 53.913 230 98 7 27 255 12 234 5.39e-74 228
Msa0102590 MtrunA17_Chr5g0424221 48.810 252 115 9 1 250 1 240 6.74e-69 216
Msa0102590 MtrunA17_Chr3g0112091 49.367 237 109 8 19 249 5 236 2.37e-67 211
Msa0102590 MtrunA17_Chr7g0239131 46.531 245 125 6 9 252 5 244 5.27e-64 202
Msa0102590 MtrunA17_Chr6g0452331 45.778 225 116 6 28 249 30 251 6.55e-64 203
Msa0102590 MtrunA17_Chr4g0031221 44.444 225 117 7 29 249 31 251 6.15e-61 195
Msa0102590 MtrunA17_Chr5g0406771 53.672 177 77 3 15 188 1 175 6.25e-60 189
Msa0102590 MtrunA17_Chr2g0311531 47.162 229 91 8 22 249 22 221 1.85e-59 191
Msa0102590 MtrunA17_Chr2g0311501 48.108 185 87 7 69 249 2 181 3.25e-53 173
Msa0102590 MtrunA17_Chr5g0397831 40.964 249 118 8 8 249 9 235 5.44e-50 166
Msa0102590 MtrunA17_Chr5g0397821 40.000 225 111 7 26 249 23 224 1.53e-46 157
Msa0102590 MtrunA17_Chr8g0386341 39.918 243 118 9 10 249 30 247 4.19e-46 156
Msa0102590 MtrunA17_Chr2g0309611 31.048 248 155 6 10 248 9 249 6.13e-38 135
Msa0102590 MtrunA17_Chr1g0179911 30.769 247 153 6 10 251 6 239 3.45e-32 120
Msa0102590 MtrunA17_Chr8g0386351 43.262 141 68 6 5 142 40 171 1.42e-27 107
Msa0102590 MtrunA17_Chr1g0180181 58.333 84 34 1 168 251 18 100 2.56e-24 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102590 AT1G75800.1 63.526 329 97 4 13 325 9 330 1.76e-147 418
Msa0102590 AT1G20030.2 66.557 305 96 3 23 325 16 316 6.71e-144 409
Msa0102590 AT1G20030.1 66.337 303 96 3 25 325 1 299 9.60e-143 405
Msa0102590 AT4G36010.1 63.736 273 91 4 23 289 19 289 6.86e-118 342
Msa0102590 AT4G36010.2 63.736 273 91 4 23 289 19 289 6.86e-118 342
Msa0102590 AT4G38670.3 61.446 249 95 1 10 257 6 254 1.93e-110 322
Msa0102590 AT4G38670.1 61.446 249 95 1 10 257 6 254 1.93e-110 322
Msa0102590 AT4G38670.2 62.605 238 88 1 21 257 1 238 3.97e-108 316
Msa0102590 AT2G17860.1 62.857 245 86 4 13 253 9 252 4.22e-107 313
Msa0102590 AT4G38660.1 62.109 256 88 5 17 272 20 266 4.41e-102 303
Msa0102590 AT4G38660.2 62.302 252 86 5 21 272 2 244 4.59e-101 300
Msa0102590 AT4G24180.1 56.584 281 108 5 3 275 7 281 4.21e-99 295
Msa0102590 AT4G24180.2 56.272 279 107 5 3 275 7 276 4.09e-98 292
Msa0102590 AT4G24180.6 59.533 257 90 5 3 251 7 257 6.97e-98 290
Msa0102590 AT5G38280.1 54.373 263 113 4 13 269 11 272 2.15e-97 301
Msa0102590 AT5G38280.2 54.373 263 113 4 13 269 11 272 3.65e-97 301
Msa0102590 AT4G24180.5 59.216 255 89 5 3 251 7 252 9.80e-97 286
Msa0102590 AT4G24180.3 59.307 231 83 3 10 234 16 241 6.14e-89 270
Msa0102590 AT4G24180.4 58.696 230 84 3 11 234 12 236 8.45e-88 266
Msa0102590 AT1G19320.1 57.831 249 89 9 8 250 9 247 2.88e-87 262
Msa0102590 AT1G75030.1 58.442 231 88 7 26 255 23 246 4.92e-84 254
Msa0102590 AT1G75050.1 56.962 237 97 5 13 249 11 242 5.14e-84 254
Msa0102590 AT1G75040.1 56.846 241 96 6 9 249 6 238 1.54e-83 253
Msa0102590 AT1G18250.1 54.464 224 97 4 26 249 20 238 6.66e-80 243
Msa0102590 AT1G18250.2 54.464 224 97 4 26 249 21 239 6.96e-80 243
Msa0102590 AT5G24620.1 51.639 244 111 5 11 249 9 250 7.82e-80 249
Msa0102590 AT1G73620.1 55.357 224 95 4 26 249 41 259 8.70e-80 244
Msa0102590 AT5G24620.3 51.639 244 111 5 11 249 85 326 1.50e-79 251
Msa0102590 AT5G24620.4 51.639 244 111 5 11 249 64 305 1.84e-79 250
Msa0102590 AT1G77700.3 51.304 230 92 9 26 251 60 273 3.24e-70 221
Msa0102590 AT1G77700.2 51.327 226 98 8 26 251 60 273 1.16e-69 219
Msa0102590 AT1G77700.1 51.327 226 98 8 26 251 88 301 1.56e-69 221
Msa0102590 AT2G28790.2 47.107 242 120 7 12 249 36 273 3.50e-67 212
Msa0102590 AT2G28790.1 47.107 242 120 7 12 249 11 248 4.33e-67 211
Msa0102590 AT1G70250.1 47.083 240 114 6 25 258 143 375 1.58e-65 220
Msa0102590 AT4G36000.2 62.644 174 53 5 103 274 1 164 8.50e-65 204
Msa0102590 AT4G36000.1 62.644 174 53 5 103 274 1 164 8.50e-65 204
Msa0102590 AT4G18253.1 43.443 244 128 4 13 255 9 243 1.59e-64 204
Msa0102590 AT5G40020.1 43.200 250 134 6 6 251 4 249 1.54e-63 202
Msa0102590 AT4G18250.1 44.030 268 139 6 13 277 42 301 2.58e-62 210
Msa0102590 AT5G02140.1 44.177 249 133 6 14 260 7 251 2.10e-61 198
Msa0102590 AT5G02140.2 45.798 238 123 6 14 249 7 240 1.30e-60 194
Msa0102590 AT4G11650.1 39.506 243 122 8 8 249 4 222 2.35e-49 165
Msa0102590 AT5G24620.2 56.667 120 47 3 134 249 15 133 1.39e-37 136
Msa0102590 AT2G24810.1 62.195 82 26 3 170 250 116 193 7.91e-27 105

Find 146 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCATGGGGCGGCCGTTTC+TGG -0.083846 1_3:+9452066 Msa0102590:CDS
CTAATGAGATCTTCATTCTT+AGG 0.152586 1_3:+9453664 Msa0102590:exon
GACCACACATTCACGTTTAT+TGG 0.178738 1_3:+9453726 Msa0102590:three_prime_UTR
GCACTTCATTTATCAATTTC+AGG 0.179100 1_3:+9451748 Msa0102590:CDS
GCCAGAGCATTCAACCTTTC+CGG 0.211647 1_3:-9452153 None:intergenic
GAGGGGTGGGATTCATTTAT+TGG 0.238808 1_3:+9454084 Msa0102590:three_prime_UTR
CTCATGGGGCGGCCGTTTCT+GGG 0.253028 1_3:+9452067 Msa0102590:CDS
TGGTTGGAGAATGTAATATT+TGG 0.270579 1_3:+9454104 Msa0102590:three_prime_UTR
TTAAGTATGGCTCATGGATT+TGG 0.313740 1_3:+9453813 Msa0102590:three_prime_UTR
CCAGGGATTCTTTCAAATGC+TGG 0.316773 1_3:+9451975 Msa0102590:CDS
ATTTATACATGTAGCAATAT+AGG 0.317837 1_3:+9453946 Msa0102590:three_prime_UTR
TGTAATATTTGGCTACAATA+AGG 0.334675 1_3:+9454115 Msa0102590:three_prime_UTR
TTTAAAGAGGGTCCCACATT+TGG 0.343784 1_3:-9453750 None:intergenic
AACAATTGAGAATAAGTAGA+AGG 0.345262 1_3:-9452482 None:intergenic
CAGGGATTCTTTCAAATGCT+GGG 0.347178 1_3:+9451976 Msa0102590:CDS
AGGGAATAGGAATACTTTAT+AGG 0.348327 1_3:-9451483 None:intergenic
TAATATGAAGAATGTGAATA+GGG 0.353025 1_3:-9451635 None:intergenic
AAGGTATTTATAGAGAAAGT+TGG 0.353185 1_3:-9451513 None:intergenic
GAGTCATGTCCTAGTCAATA+AGG 0.357507 1_3:-9453836 None:intergenic
ATATAGGTGACGATGTAGTT+AGG 0.361985 1_3:+9453962 Msa0102590:three_prime_UTR
CAGTGGTGGTTTCGCCGGTT+TGG 0.373152 1_3:-9452031 None:intergenic
TATTGCTGCAGCGGCGCGTA+TGG 0.373787 1_3:+9452440 Msa0102590:CDS
TTAATATGAAGAATGTGAAT+AGG 0.385546 1_3:-9451636 None:intergenic
TAATGAGATCTTCATTCTTA+GGG 0.392642 1_3:+9453665 Msa0102590:exon
TTCGATGTTAGTCTTGTTGA+CGG 0.393312 1_3:+9452242 Msa0102590:CDS
GGAAAATTCTCATGTGTAAC+CGG 0.404051 1_3:+9452119 Msa0102590:CDS
TGCACGCAATAGTTTGTGAT+TGG 0.405228 1_3:-9453598 None:intergenic
GTCGCCCCTCAGGGCGGCTC+TGG 0.409338 1_3:+9452284 Msa0102590:CDS
TTAGCATCGCTATGGTCCTT+TGG 0.410645 1_3:+9453624 Msa0102590:CDS
TGCCTAGTGATCTATAACAT+TGG 0.414412 1_3:-9454035 None:intergenic
TCTCAACGGCGCGTGTCCTT+CGG 0.414761 1_3:+9452340 Msa0102590:CDS
GCCTATGCTAGTCGCCCCTC+AGG 0.418663 1_3:+9452274 Msa0102590:CDS
AGTTGGAAGTGAAAGGGAAT+AGG 0.426760 1_3:-9451496 None:intergenic
TTCTTTGTATTGAGAGGGGT+GGG 0.429939 1_3:+9454071 Msa0102590:three_prime_UTR
TCCGGAAAGGTTGAATGCTC+TGG 0.437194 1_3:+9452152 Msa0102590:CDS
GCCTAGTGATCTATAACATT+GGG 0.437504 1_3:-9454034 None:intergenic
GTGAATTCGGCTAAAGTTGC+CGG 0.439691 1_3:-9452191 None:intergenic
ATTTGGCTACAATAAGGAAA+TGG 0.441751 1_3:+9454121 Msa0102590:three_prime_UTR
TAGAGAAAGTTGGAAGTGAA+AGG 0.451330 1_3:-9451503 None:intergenic
TGTATAAATAAATAAATGTA+TGG 0.451975 1_3:-9453932 None:intergenic
ACGTGAATGTGTGGTCATAT+TGG 0.457357 1_3:-9453719 None:intergenic
AACCATGTGTGAGTTAAGTA+TGG 0.464049 1_3:+9453800 Msa0102590:three_prime_UTR
AGAGCCGTCTAATGTGAATT+CGG 0.464663 1_3:-9452204 None:intergenic
TGTCACCGCACCAGCCTCAT+GGG 0.466682 1_3:+9452052 Msa0102590:CDS
ACAGGCTTTGTTCTCCAAAC+CGG 0.470298 1_3:+9452017 Msa0102590:CDS
GTAACCGGCGATTGTGGCTC+CGG 0.470556 1_3:+9452134 Msa0102590:CDS
GTAGAAGGTTTGCAAGTGTC+TGG 0.470850 1_3:-9452467 None:intergenic
CACGTTTATTGGTCCAAATG+TGG 0.476217 1_3:+9453737 Msa0102590:three_prime_UTR
TGATGAAATGAGGAGCATAA+AGG 0.482679 1_3:-9451532 None:intergenic
TTATGAGATTTGATGAAATG+AGG 0.483107 1_3:-9451542 None:intergenic
AAACGGCCGCCCCATGAGGC+TGG 0.484136 1_3:-9452062 None:intergenic
CTGTCACCGCACCAGCCTCA+TGG 0.485359 1_3:+9452051 Msa0102590:CDS
AGAGAAAGTTGGAAGTGAAA+GGG 0.485434 1_3:-9451502 None:intergenic
GGTGGGATTCATTTATTGGT+TGG 0.492822 1_3:+9454088 Msa0102590:three_prime_UTR
CCAGCATTTGAAAGAATCCC+TGG 0.493036 1_3:-9451975 None:intergenic
TTGAATTCTTTGTATTGAGA+GGG 0.494536 1_3:+9454066 Msa0102590:three_prime_UTR
TGTGACTACACAGTGTGGCC+AGG 0.496467 1_3:+9451957 Msa0102590:CDS
GGTGACAGTGGTGGTTTCGC+CGG 0.497671 1_3:-9452036 None:intergenic
TGGATTTGGCCTTATTGACT+AGG 0.503947 1_3:+9453827 Msa0102590:three_prime_UTR
TATAGGTGACGATGTAGTTA+GGG 0.505321 1_3:+9453963 Msa0102590:three_prime_UTR
AAAGAGTTCTGCCCCAGAAA+CGG 0.509995 1_3:-9452079 None:intergenic
TCATGGGGCGGCCGTTTCTG+GGG 0.511165 1_3:+9452068 Msa0102590:CDS
ATAAATGTATGGTGGTAGCT+TGG 0.512014 1_3:-9453921 None:intergenic
GAAGATCTCATTAGAAGAGT+TGG 0.513485 1_3:-9453655 None:intergenic
GCATCGCTATGGTCCTTTGG+CGG 0.514552 1_3:+9453627 Msa0102590:CDS
GACAAAATGTCAAGGGTTGT+AGG 0.515639 1_3:-9453875 None:intergenic
ATTGAATTCTTTGTATTGAG+AGG 0.516735 1_3:+9454065 Msa0102590:three_prime_UTR
AAAGTAACTAACCTTGTGGT+TGG 0.518082 1_3:-9452608 None:intergenic
AAGCCTGTGGTTGGAAGTGT+TGG 0.519230 1_3:-9452002 None:intergenic
TATCGCCAGAGCCGCCCTGA+GGG 0.521997 1_3:-9452289 None:intergenic
CCCTGAGGGGCGACTAGCAT+AGG 0.525025 1_3:-9452275 None:intergenic
TCATGTGTAACCGGCGATTG+TGG 0.527231 1_3:+9452128 Msa0102590:CDS
GAATTCACATTAGACGGCTC+TGG 0.528881 1_3:+9452206 Msa0102590:CDS
CTTTGCTCCCAAGACACTGA+TGG 0.532188 1_3:+9452098 Msa0102590:CDS
TTCACATTAGACGGCTCTGG+TGG 0.532251 1_3:+9452209 Msa0102590:CDS
ATTGCTGCAGCGGCGCGTAT+GGG 0.534091 1_3:+9452441 Msa0102590:CDS
GGCGATAATTGCACTACCAC+GGG 0.537099 1_3:+9452305 Msa0102590:CDS
TCCCAATGTTATAGATCACT+AGG 0.540797 1_3:+9454033 Msa0102590:three_prime_UTR
GGCTAAAGTTGCCGGCGGTG+TGG 0.544415 1_3:-9452183 None:intergenic
TTCAGTCAAAAGGCAACACA+AGG 0.545590 1_3:+9453449 Msa0102590:intron
ATAGCTATATGCACGTGGGC+AGG 0.548259 1_3:-9452513 None:intergenic
ACGTTTATTGGTCCAAATGT+GGG 0.552340 1_3:+9453738 Msa0102590:three_prime_UTR
CTTAGAGTGATGAGTGTGGA+TGG 0.554333 1_3:+9452365 Msa0102590:CDS
TGGAGAACAAAGCCTGTGGT+TGG 0.555388 1_3:-9452011 None:intergenic
CCTATGCTAGTCGCCCCTCA+GGG 0.555587 1_3:+9452275 Msa0102590:CDS
AGGGATTCTTTCAAATGCTG+GGG 0.560190 1_3:+9451977 Msa0102590:CDS
GCCGCCCCATGAGGCTGGTG+CGG 0.562230 1_3:-9452057 None:intergenic
GCGCCGCTGCAGCAATACTC+CGG 0.562265 1_3:-9452434 None:intergenic
CTTTCCGGAGCCACAATCGC+CGG 0.563498 1_3:-9452138 None:intergenic
GTGCATTATTAGCATCGCTA+TGG 0.565084 1_3:+9453616 Msa0102590:CDS
ATTCTTTGTATTGAGAGGGG+TGG 0.565172 1_3:+9454070 Msa0102590:three_prime_UTR
CGGCGATTGTGGCTCCGGAA+AGG 0.566510 1_3:+9452139 Msa0102590:CDS
GTGACTACACAGTGTGGCCA+GGG 0.569936 1_3:+9451958 Msa0102590:CDS
TGAATTCTTTGTATTGAGAG+GGG 0.570466 1_3:+9454067 Msa0102590:three_prime_UTR
GTGGTCATATTGGATGATTA+TGG 0.572627 1_3:-9453709 None:intergenic
GTCCCAACACTTCCAACCAC+AGG 0.572652 1_3:+9451999 Msa0102590:CDS
AAGGTTGAATGCTCTGGCAA+CGG 0.576244 1_3:+9452158 Msa0102590:CDS
TTAGCCGAATTCACATTAGA+CGG 0.576825 1_3:+9452200 Msa0102590:CDS
TGGCAACGGAGCCACACCGC+CGG 0.578628 1_3:+9452172 Msa0102590:CDS
TAGTTTGTGATTGGAGCACA+TGG 0.581696 1_3:-9453589 None:intergenic
ACCGCACCAGCCTCATGGGG+CGG 0.586044 1_3:+9452056 Msa0102590:CDS
AATATGAAGAATGTGAATAG+GGG 0.590762 1_3:-9451634 None:intergenic
CATGACTCATTTCAAAGGAA+AGG 0.591738 1_3:+9453851 Msa0102590:three_prime_UTR
ATGAGTGTGGATGGGAAAGA+CGG 0.592613 1_3:+9452374 Msa0102590:CDS
TGGCGATAATTGCACTACCA+CGG 0.593427 1_3:+9452304 Msa0102590:CDS
GACAATACAATGGTGTATGA+AGG 0.596541 1_3:+9453527 Msa0102590:CDS
CCAGAAACGGCCGCCCCATG+AGG 0.596649 1_3:-9452066 None:intergenic
TAGGACATGACTCATTTCAA+AGG 0.597781 1_3:+9453846 Msa0102590:three_prime_UTR
ATAAATAAATAAATGTATGG+TGG 0.599349 1_3:-9453929 None:intergenic
TCACCGGAGTATTGCTGCAG+CGG 0.602026 1_3:+9452431 Msa0102590:CDS
ATACAGCTTCAACATATACA+TGG 0.605288 1_3:+9451684 Msa0102590:exon
AGAGTTGGCACAACCGCCAA+AGG 0.605702 1_3:-9453640 None:intergenic
ATTTGCACAAGTGAAAGTGC+TGG 0.609107 1_3:-9452552 None:intergenic
TTGGAGCACATGGGTGCACA+TGG 0.612628 1_3:-9453579 None:intergenic
TTATCGCCAGAGCCGCCCTG+AGG 0.617214 1_3:-9452290 None:intergenic
AGCCTGTGGTTGGAAGTGTT+GGG 0.621679 1_3:-9452001 None:intergenic
TGTGAGTTAAGTATGGCTCA+TGG 0.623058 1_3:+9453807 Msa0102590:three_prime_UTR
TAGCTTGGCCTCCTGCACAA+AGG 0.623226 1_3:-9453906 None:intergenic
TCACATTAGACGGCTCTGGT+GGG 0.623574 1_3:+9452210 Msa0102590:CDS
TGAGGCTGGTGCGGTGACAG+TGG 0.623668 1_3:-9452048 None:intergenic
ATCGCCAGAGCCGCCCTGAG+GGG 0.629555 1_3:-9452288 None:intergenic
GTCATTGCTAAGCTGAGGTG+AGG 0.630131 1_3:-9453507 None:intergenic
TTAGAGTGATGAGTGTGGAT+GGG 0.630518 1_3:+9452366 Msa0102590:CDS
GTCACCGCACCAGCCTCATG+GGG 0.632870 1_3:+9452053 Msa0102590:CDS
GGCTGGTGCGGTGACAGTGG+TGG 0.635446 1_3:-9452045 None:intergenic
GAATACTTTATAGGACACGT+TGG 0.636761 1_3:-9451474 None:intergenic
TTTGTTCTTCTCCAACCACA+AGG 0.638050 1_3:+9452597 Msa0102590:CDS
CTCATCACTCTAAGCTCCGA+AGG 0.638536 1_3:-9452356 None:intergenic
AAATTGATAGTGCTTGGTGG+TGG 0.651065 1_3:-9451711 None:intergenic
TAAGCATAGCTATATGCACG+TGG 0.665332 1_3:-9452518 None:intergenic
GACCAATAAACGTGAATGTG+TGG 0.671423 1_3:-9453728 None:intergenic
GGATGTATCAGTGATCTCAA+CGG 0.673930 1_3:+9452326 Msa0102590:CDS
GCTTAGCAATGACAATACAA+TGG 0.678768 1_3:+9453517 Msa0102590:CDS
GAGATCACTGATACATCCCG+TGG 0.679790 1_3:-9452321 None:intergenic
AGGACACGTTGGTTATAACG+TGG 0.686295 1_3:-9451463 None:intergenic
ATGCTAGTCGCCCCTCAGGG+CGG 0.689357 1_3:+9452278 Msa0102590:CDS
AGCCATACTTAACTCACACA+TGG 0.689446 1_3:-9453802 None:intergenic
GTATTGTCATTGCTAAGCTG+AGG 0.695826 1_3:-9453512 None:intergenic
GGTTTGGAGAACAAAGCCTG+TGG 0.698538 1_3:-9452015 None:intergenic
AATTCGGCTAAAGTTGCCGG+CGG 0.706419 1_3:-9452188 None:intergenic
AATACAATGGTGTATGAAGG+TGG 0.707551 1_3:+9453530 Msa0102590:CDS
TCAGTCAAAAGGCAACACAA+GGG 0.710852 1_3:+9453450 Msa0102590:intron
AAGCATAGCTATATGCACGT+GGG 0.721806 1_3:-9452517 None:intergenic
GGAGCTTAGAGTGATGAGTG+TGG 0.722376 1_3:+9452361 Msa0102590:CDS
ACAAATGTGACTACACAGTG+TGG 0.729139 1_3:+9451952 Msa0102590:CDS
AGTTTGTGATTGGAGCACAT+GGG 0.759112 1_3:-9453588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATAAATAAATAAATGTA+TGG - chr1_3:9453935-9453954 None:intergenic 10.0%
!!! AACTATAAAATGTTTGTTTT+TGG - chr1_3:9451803-9451822 None:intergenic 15.0%
!! ATTAAATATAAGAGACAATT+TGG - chr1_3:9451852-9451871 None:intergenic 15.0%
!! TAAGATTGATTATATTCAAT+AGG - chr1_3:9452684-9452703 None:intergenic 15.0%
!! ATAAATAAATAAATGTATGG+TGG - chr1_3:9453932-9453951 None:intergenic 15.0%
!! AAGATATGAGAAAAAGAAAT+GGG - chr1_3:9451613-9451632 None:intergenic 20.0%
!! TAAGATATGAGAAAAAGAAA+TGG - chr1_3:9451614-9451633 None:intergenic 20.0%
!! TAATATGAAGAATGTGAATA+GGG - chr1_3:9451638-9451657 None:intergenic 20.0%
!! TTAATATGAAGAATGTGAAT+AGG - chr1_3:9451639-9451658 None:intergenic 20.0%
!!! TTTTTACGGTTATTATTTTG+AGG - chr1_3:9452646-9452665 None:intergenic 20.0%
!! TTGAATATAATCAATCTTAC+CGG + chr1_3:9452685-9452704 Msa0102590:intron 20.0%
!! TCATATTAGTTAAGATTTAC+CGG - chr1_3:9452707-9452726 None:intergenic 20.0%
!! AATAAATTGTTCAATGAACT+CGG + chr1_3:9452848-9452867 Msa0102590:intron 20.0%
!!! AGAACAATTTTTCTATGAAT+CGG + chr1_3:9452946-9452965 Msa0102590:intron 20.0%
!!! AATATAATTGGTTCTAGATA+TGG - chr1_3:9453200-9453219 None:intergenic 20.0%
!! TGTACATCAATCAATATAAT+TGG - chr1_3:9453212-9453231 None:intergenic 20.0%
!!! TTATATTGATTGATGTACAT+TGG + chr1_3:9453213-9453232 Msa0102590:intron 20.0%
!!! CTATTATATTTTCAGTCAAA+AGG + chr1_3:9453439-9453458 Msa0102590:intron 20.0%
!!! AGTCAAACTAATTTTAAAGA+GGG - chr1_3:9453765-9453784 None:intergenic 20.0%
!!! AAGTCAAACTAATTTTAAAG+AGG - chr1_3:9453766-9453785 None:intergenic 20.0%
!! ATTTATACATGTAGCAATAT+AGG + chr1_3:9453946-9453965 Msa0102590:three_prime_UTR 20.0%
!!! ATAACGTGGTTTTTTCATTT+GGG - chr1_3:9451452-9451471 None:intergenic 25.0%
!!! TATAACGTGGTTTTTTCATT+TGG - chr1_3:9451453-9451472 None:intergenic 25.0%
!! AAGGTATTTATAGAGAAAGT+TGG - chr1_3:9451516-9451535 None:intergenic 25.0%
! TTATGAGATTTGATGAAATG+AGG - chr1_3:9451545-9451564 None:intergenic 25.0%
!!! GTTTTTTCTTTGTATAAGAG+TGG - chr1_3:9451574-9451593 None:intergenic 25.0%
! AATATGAAGAATGTGAATAG+GGG - chr1_3:9451637-9451656 None:intergenic 25.0%
!!! ATGAAAAAATTGATAGTGCT+TGG - chr1_3:9451720-9451739 None:intergenic 25.0%
!!! AATGTTTGTTTTTGGTGATT+TGG - chr1_3:9451795-9451814 None:intergenic 25.0%
! TTTGTGAATATATCATATGC+AGG + chr1_3:9451900-9451919 Msa0102590:intron 25.0%
! AACAATTGAGAATAAGTAGA+AGG - chr1_3:9452485-9452504 None:intergenic 25.0%
! AAATAAAGTAACTAACCTTG+TGG - chr1_3:9452615-9452634 None:intergenic 25.0%
!!! GCACAATGGTAAATTTTTTA+CGG - chr1_3:9452660-9452679 None:intergenic 25.0%
! GACAAAATTCATTAATCACT+TGG - chr1_3:9452824-9452843 None:intergenic 25.0%
! ATAAATTGTTCAATGAACTC+GGG + chr1_3:9452849-9452868 Msa0102590:intron 25.0%
!! CTGTAAAGTAATTTAGAGTT+CGG - chr1_3:9452925-9452944 None:intergenic 25.0%
! TTCAATAGAAATTGATGCAA+AGG + chr1_3:9453047-9453066 Msa0102590:intron 25.0%
! TCAATAGAAATTGATGCAAA+GGG + chr1_3:9453048-9453067 Msa0102590:intron 25.0%
!! ATAAAGTTCATCACACTTTT+TGG - chr1_3:9453322-9453341 None:intergenic 25.0%
!! TCACAATGTAATTTTCCTAA+CGG - chr1_3:9453347-9453366 None:intergenic 25.0%
! TAATGAGATCTTCATTCTTA+GGG + chr1_3:9453665-9453684 Msa0102590:exon 25.0%
!!! TTTTTAGGACAAAATGTCAA+GGG - chr1_3:9453885-9453904 None:intergenic 25.0%
!!! TTTTTTAGGACAAAATGTCA+AGG - chr1_3:9453886-9453905 None:intergenic 25.0%
! ATTGAATTCTTTGTATTGAG+AGG + chr1_3:9454065-9454084 Msa0102590:three_prime_UTR 25.0%
! TTGAATTCTTTGTATTGAGA+GGG + chr1_3:9454066-9454085 Msa0102590:three_prime_UTR 25.0%
! TGTAATATTTGGCTACAATA+AGG + chr1_3:9454115-9454134 Msa0102590:three_prime_UTR 25.0%
AGGGAATAGGAATACTTTAT+AGG - chr1_3:9451486-9451505 None:intergenic 30.0%
ATACAGCTTCAACATATACA+TGG + chr1_3:9451684-9451703 Msa0102590:exon 30.0%
!! AAAAAATTGATAGTGCTTGG+TGG - chr1_3:9451717-9451736 None:intergenic 30.0%
GCACTTCATTTATCAATTTC+AGG + chr1_3:9451748-9451767 Msa0102590:CDS 30.0%
TATATTCAATAGGTGCACAA+TGG - chr1_3:9452674-9452693 None:intergenic 30.0%
! GAGTTTGATTCGATTAGATT+GGG + chr1_3:9452757-9452776 Msa0102590:intron 30.0%
! ACAATTTTTCTATGAATCGG+AGG + chr1_3:9452949-9452968 Msa0102590:intron 30.0%
! CAATTTTTCTATGAATCGGA+GGG + chr1_3:9452950-9452969 Msa0102590:intron 30.0%
!! ACATTCATAACTATTTCTGC+CGG - chr1_3:9453124-9453143 None:intergenic 30.0%
!! CACATTGGATATTTTGGATT+TGG - chr1_3:9453149-9453168 None:intergenic 30.0%
TCCAAAATATCCAATGTGAT+AGG + chr1_3:9453151-9453170 Msa0102590:intron 30.0%
! ACCTATCACATTGGATATTT+TGG - chr1_3:9453155-9453174 None:intergenic 30.0%
TACATTGGATTCGCAAAATA+TGG + chr1_3:9453228-9453247 Msa0102590:intron 30.0%
ACATTGGATTCGCAAAATAT+GGG + chr1_3:9453229-9453248 Msa0102590:intron 30.0%
TTATCGTTACACAACACTAT+TGG + chr1_3:9453270-9453289 Msa0102590:intron 30.0%
CTAATGAGATCTTCATTCTT+AGG + chr1_3:9453664-9453683 Msa0102590:exon 30.0%
TGAATTCTTTGTATTGAGAG+GGG + chr1_3:9454067-9454086 Msa0102590:three_prime_UTR 30.0%
TGGTTGGAGAATGTAATATT+TGG + chr1_3:9454104-9454123 Msa0102590:three_prime_UTR 30.0%
ATTTGGCTACAATAAGGAAA+TGG + chr1_3:9454121-9454140 Msa0102590:three_prime_UTR 30.0%
GAATACTTTATAGGACACGT+TGG - chr1_3:9451477-9451496 None:intergenic 35.0%
AGAGAAAGTTGGAAGTGAAA+GGG - chr1_3:9451505-9451524 None:intergenic 35.0%
TAGAGAAAGTTGGAAGTGAA+AGG - chr1_3:9451506-9451525 None:intergenic 35.0%
! TGATGAAATGAGGAGCATAA+AGG - chr1_3:9451535-9451554 None:intergenic 35.0%
! GAATTTTCCATCAGTGTCTT+GGG - chr1_3:9452108-9452127 None:intergenic 35.0%
! AGAATTTTCCATCAGTGTCT+TGG - chr1_3:9452109-9452128 None:intergenic 35.0%
GGAAAATTCTCATGTGTAAC+CGG + chr1_3:9452119-9452138 Msa0102590:CDS 35.0%
TTAGCCGAATTCACATTAGA+CGG + chr1_3:9452200-9452219 Msa0102590:CDS 35.0%
!! TTCGATGTTAGTCTTGTTGA+CGG + chr1_3:9452242-9452261 Msa0102590:CDS 35.0%
!! ATGCGAAGCTTTTAATTCAC+CGG + chr1_3:9452415-9452434 Msa0102590:CDS 35.0%
AAAGTAACTAACCTTGTGGT+TGG - chr1_3:9452611-9452630 None:intergenic 35.0%
!! TCCGAACTATTGGTTCATAA+GGG - chr1_3:9452739-9452758 None:intergenic 35.0%
! GGAGTTTGATTCGATTAGAT+TGG + chr1_3:9452756-9452775 Msa0102590:intron 35.0%
!! TACTTTTTAGCCACCATGAT+TGG + chr1_3:9453012-9453031 Msa0102590:intron 35.0%
AATTGATTACCCACCAATCA+TGG - chr1_3:9453028-9453047 None:intergenic 35.0%
ATTGCTTGCAATTGCAAACA+TGG - chr1_3:9453077-9453096 None:intergenic 35.0%
TAGTAGGTGAAGCAACATAA+TGG + chr1_3:9453098-9453117 Msa0102590:intron 35.0%
TGATGAACTTTATGACCGTT+AGG + chr1_3:9453329-9453348 Msa0102590:intron 35.0%
GCTTAGCAATGACAATACAA+TGG + chr1_3:9453517-9453536 Msa0102590:CDS 35.0%
GACAATACAATGGTGTATGA+AGG + chr1_3:9453527-9453546 Msa0102590:CDS 35.0%
AATACAATGGTGTATGAAGG+TGG + chr1_3:9453530-9453549 Msa0102590:CDS 35.0%
GAAGATCTCATTAGAAGAGT+TGG - chr1_3:9453658-9453677 None:intergenic 35.0%
GTGGTCATATTGGATGATTA+TGG - chr1_3:9453712-9453731 None:intergenic 35.0%
ACGTTTATTGGTCCAAATGT+GGG + chr1_3:9453738-9453757 Msa0102590:three_prime_UTR 35.0%
AACCATGTGTGAGTTAAGTA+TGG + chr1_3:9453800-9453819 Msa0102590:three_prime_UTR 35.0%
TTAAGTATGGCTCATGGATT+TGG + chr1_3:9453813-9453832 Msa0102590:three_prime_UTR 35.0%
TAGGACATGACTCATTTCAA+AGG + chr1_3:9453846-9453865 Msa0102590:three_prime_UTR 35.0%
CATGACTCATTTCAAAGGAA+AGG + chr1_3:9453851-9453870 Msa0102590:three_prime_UTR 35.0%
ATAAATGTATGGTGGTAGCT+TGG - chr1_3:9453924-9453943 None:intergenic 35.0%
ATATAGGTGACGATGTAGTT+AGG + chr1_3:9453962-9453981 Msa0102590:three_prime_UTR 35.0%
TATAGGTGACGATGTAGTTA+GGG + chr1_3:9453963-9453982 Msa0102590:three_prime_UTR 35.0%
TCCCAATGTTATAGATCACT+AGG + chr1_3:9454033-9454052 Msa0102590:three_prime_UTR 35.0%
GCCTAGTGATCTATAACATT+GGG - chr1_3:9454037-9454056 None:intergenic 35.0%
TGCCTAGTGATCTATAACAT+TGG - chr1_3:9454038-9454057 None:intergenic 35.0%
AGTTGGAAGTGAAAGGGAAT+AGG - chr1_3:9451499-9451518 None:intergenic 40.0%
!! AAATTGATAGTGCTTGGTGG+TGG - chr1_3:9451714-9451733 None:intergenic 40.0%
ACAAATGTGACTACACAGTG+TGG + chr1_3:9451952-9451971 Msa0102590:CDS 40.0%
CAGGGATTCTTTCAAATGCT+GGG + chr1_3:9451976-9451995 Msa0102590:CDS 40.0%
AGGGATTCTTTCAAATGCTG+GGG + chr1_3:9451977-9451996 Msa0102590:CDS 40.0%
AGAGCCGTCTAATGTGAATT+CGG - chr1_3:9452207-9452226 None:intergenic 40.0%
GGATGTATCAGTGATCTCAA+CGG + chr1_3:9452326-9452345 Msa0102590:CDS 40.0%
TTAGAGTGATGAGTGTGGAT+GGG + chr1_3:9452366-9452385 Msa0102590:CDS 40.0%
AAGCATAGCTATATGCACGT+GGG - chr1_3:9452520-9452539 None:intergenic 40.0%
TAAGCATAGCTATATGCACG+TGG - chr1_3:9452521-9452540 None:intergenic 40.0%
! ATTTGCACAAGTGAAAGTGC+TGG - chr1_3:9452555-9452574 None:intergenic 40.0%
TTTGTTCTTCTCCAACCACA+AGG + chr1_3:9452597-9452616 Msa0102590:CDS 40.0%
!! CCGAACTATTGGTTCATAAG+GGG - chr1_3:9452738-9452757 None:intergenic 40.0%
CCCCTTATGAACCAATAGTT+CGG + chr1_3:9452735-9452754 Msa0102590:intron 40.0%
!! CTCCGAACTATTGGTTCATA+AGG - chr1_3:9452740-9452759 None:intergenic 40.0%
CGAATCAAACTCCGAACTAT+TGG - chr1_3:9452749-9452768 None:intergenic 40.0%
ATGAACTCGGGTTCGATTAA+TGG + chr1_3:9452861-9452880 Msa0102590:intron 40.0%
TGAACTCGGGTTCGATTAAT+GGG + chr1_3:9452862-9452881 Msa0102590:intron 40.0%
GGTCGCGAGGTAAATTATAA+CGG - chr1_3:9452904-9452923 None:intergenic 40.0%
!! TTTTTAGCCACCATGATTGG+TGG + chr1_3:9453015-9453034 Msa0102590:intron 40.0%
! TTTTAGCCACCATGATTGGT+GGG + chr1_3:9453016-9453035 Msa0102590:intron 40.0%
GCAATTGCAAGCAATCTAGT+AGG + chr1_3:9453082-9453101 Msa0102590:intron 40.0%
TTGGATTCGCAAAATATGGG+TGG + chr1_3:9453232-9453251 Msa0102590:intron 40.0%
TGTTGTGTAACGATAACCCT+TGG - chr1_3:9453266-9453285 None:intergenic 40.0%
TTCAGTCAAAAGGCAACACA+AGG + chr1_3:9453449-9453468 Msa0102590:intron 40.0%
TCAGTCAAAAGGCAACACAA+GGG + chr1_3:9453450-9453469 Msa0102590:intron 40.0%
GTATTGTCATTGCTAAGCTG+AGG - chr1_3:9453515-9453534 None:intergenic 40.0%
AGTTTGTGATTGGAGCACAT+GGG - chr1_3:9453591-9453610 None:intergenic 40.0%
! TAGTTTGTGATTGGAGCACA+TGG - chr1_3:9453592-9453611 None:intergenic 40.0%
! TGCACGCAATAGTTTGTGAT+TGG - chr1_3:9453601-9453620 None:intergenic 40.0%
GTGCATTATTAGCATCGCTA+TGG + chr1_3:9453616-9453635 Msa0102590:CDS 40.0%
!! GGGCATTTTCTAGTGTAGTT+AGG + chr1_3:9453685-9453704 Msa0102590:three_prime_UTR 40.0%
ACGTGAATGTGTGGTCATAT+TGG - chr1_3:9453722-9453741 None:intergenic 40.0%
GACCACACATTCACGTTTAT+TGG + chr1_3:9453726-9453745 Msa0102590:three_prime_UTR 40.0%
GACCAATAAACGTGAATGTG+TGG - chr1_3:9453731-9453750 None:intergenic 40.0%
CACGTTTATTGGTCCAAATG+TGG + chr1_3:9453737-9453756 Msa0102590:three_prime_UTR 40.0%
TTTAAAGAGGGTCCCACATT+TGG - chr1_3:9453753-9453772 None:intergenic 40.0%
AGCCATACTTAACTCACACA+TGG - chr1_3:9453805-9453824 None:intergenic 40.0%
TGTGAGTTAAGTATGGCTCA+TGG + chr1_3:9453807-9453826 Msa0102590:three_prime_UTR 40.0%
!! TGGATTTGGCCTTATTGACT+AGG + chr1_3:9453827-9453846 Msa0102590:three_prime_UTR 40.0%
GAGTCATGTCCTAGTCAATA+AGG - chr1_3:9453839-9453858 None:intergenic 40.0%
GACAAAATGTCAAGGGTTGT+AGG - chr1_3:9453878-9453897 None:intergenic 40.0%
GTCCTAAAAAACCTTTGTGC+AGG + chr1_3:9453895-9453914 Msa0102590:three_prime_UTR 40.0%
!!! CTCCTGCACAAAGGTTTTTT+AGG - chr1_3:9453900-9453919 None:intergenic 40.0%
CTAAAAAACCTTTGTGCAGG+AGG + chr1_3:9453898-9453917 Msa0102590:three_prime_UTR 40.0%
ATTCTTTGTATTGAGAGGGG+TGG + chr1_3:9454070-9454089 Msa0102590:three_prime_UTR 40.0%
TTCTTTGTATTGAGAGGGGT+GGG + chr1_3:9454071-9454090 Msa0102590:three_prime_UTR 40.0%
GGTGGGATTCATTTATTGGT+TGG + chr1_3:9454088-9454107 Msa0102590:three_prime_UTR 40.0%
! AGGACACGTTGGTTATAACG+TGG - chr1_3:9451466-9451485 None:intergenic 45.0%
CCAGCATTTGAAAGAATCCC+TGG - chr1_3:9451978-9451997 None:intergenic 45.0%
CCAGGGATTCTTTCAAATGC+TGG + chr1_3:9451975-9451994 Msa0102590:CDS 45.0%
!! ACAGGCTTTGTTCTCCAAAC+CGG + chr1_3:9452017-9452036 Msa0102590:CDS 45.0%
AAAGAGTTCTGCCCCAGAAA+CGG - chr1_3:9452082-9452101 None:intergenic 45.0%
AAGGTTGAATGCTCTGGCAA+CGG + chr1_3:9452158-9452177 Msa0102590:CDS 45.0%
GTGAATTCGGCTAAAGTTGC+CGG - chr1_3:9452194-9452213 None:intergenic 45.0%
GAATTCACATTAGACGGCTC+TGG + chr1_3:9452206-9452225 Msa0102590:CDS 45.0%
TGGCGATAATTGCACTACCA+CGG + chr1_3:9452304-9452323 Msa0102590:CDS 45.0%
CTTAGAGTGATGAGTGTGGA+TGG + chr1_3:9452365-9452384 Msa0102590:CDS 45.0%
ATGAGTGTGGATGGGAAAGA+CGG + chr1_3:9452374-9452393 Msa0102590:CDS 45.0%
GTAGAAGGTTTGCAAGTGTC+TGG - chr1_3:9452470-9452489 None:intergenic 45.0%
! TAATTTAGAGTTCGGTCGCG+AGG - chr1_3:9452917-9452936 None:intergenic 45.0%
TGATTACCCACCAATCATGG+TGG - chr1_3:9453025-9453044 None:intergenic 45.0%
AGGTGAAGCAACATAATGGC+CGG + chr1_3:9453102-9453121 Msa0102590:intron 45.0%
TCCAATGTGATAGGTCTCCT+TGG + chr1_3:9453160-9453179 Msa0102590:intron 45.0%
ACCAAGGAGACCTATCACAT+TGG - chr1_3:9453164-9453183 None:intergenic 45.0%
TTAGCATCGCTATGGTCCTT+TGG + chr1_3:9453624-9453643 Msa0102590:CDS 45.0%
GAGGGGTGGGATTCATTTAT+TGG + chr1_3:9454084-9454103 Msa0102590:three_prime_UTR 45.0%
!! AGCCTGTGGTTGGAAGTGTT+GGG - chr1_3:9452004-9452023 None:intergenic 50.0%
! AAGCCTGTGGTTGGAAGTGT+TGG - chr1_3:9452005-9452024 None:intergenic 50.0%
TGGAGAACAAAGCCTGTGGT+TGG - chr1_3:9452014-9452033 None:intergenic 50.0%
GGTTTGGAGAACAAAGCCTG+TGG - chr1_3:9452018-9452037 None:intergenic 50.0%
CTTTGCTCCCAAGACACTGA+TGG + chr1_3:9452098-9452117 Msa0102590:CDS 50.0%
TCATGTGTAACCGGCGATTG+TGG + chr1_3:9452128-9452147 Msa0102590:CDS 50.0%
TCCGGAAAGGTTGAATGCTC+TGG + chr1_3:9452152-9452171 Msa0102590:CDS 50.0%
! GCCAGAGCATTCAACCTTTC+CGG - chr1_3:9452156-9452175 None:intergenic 50.0%
AATTCGGCTAAAGTTGCCGG+CGG - chr1_3:9452191-9452210 None:intergenic 50.0%
! TTCACATTAGACGGCTCTGG+TGG + chr1_3:9452209-9452228 Msa0102590:CDS 50.0%
! TCACATTAGACGGCTCTGGT+GGG + chr1_3:9452210-9452229 Msa0102590:CDS 50.0%
GGCGATAATTGCACTACCAC+GGG + chr1_3:9452305-9452324 Msa0102590:CDS 50.0%
GAGATCACTGATACATCCCG+TGG - chr1_3:9452324-9452343 None:intergenic 50.0%
CTCATCACTCTAAGCTCCGA+AGG - chr1_3:9452359-9452378 None:intergenic 50.0%
GGAGCTTAGAGTGATGAGTG+TGG + chr1_3:9452361-9452380 Msa0102590:CDS 50.0%
ATAGCTATATGCACGTGGGC+AGG - chr1_3:9452516-9452535 None:intergenic 50.0%
TGTGATAGGTCTCCTTGGTC+AGG + chr1_3:9453165-9453184 Msa0102590:intron 50.0%
GTCTCCTTGGTCAGGTACTA+GGG + chr1_3:9453173-9453192 Msa0102590:intron 50.0%
GTCATTGCTAAGCTGAGGTG+AGG - chr1_3:9453510-9453529 None:intergenic 50.0%
TGTGACTACACAGTGTGGCC+AGG + chr1_3:9451957-9451976 Msa0102590:CDS 55.0%
GTGACTACACAGTGTGGCCA+GGG + chr1_3:9451958-9451977 Msa0102590:CDS 55.0%
GTCCCAACACTTCCAACCAC+AGG + chr1_3:9451999-9452018 Msa0102590:CDS 55.0%
!! TCACCGGAGTATTGCTGCAG+CGG + chr1_3:9452431-9452450 Msa0102590:CDS 55.0%
GGTCTCCTTGGTCAGGTACT+AGG + chr1_3:9453172-9453191 Msa0102590:intron 55.0%
TGGTCCCTAGTACCTGACCA+AGG - chr1_3:9453180-9453199 None:intergenic 55.0%
TATGGGTGGCACACATGCCA+AGG + chr1_3:9453246-9453265 Msa0102590:intron 55.0%
ATGGGTGGCACACATGCCAA+GGG + chr1_3:9453247-9453266 Msa0102590:intron 55.0%
TTGGAGCACATGGGTGCACA+TGG - chr1_3:9453582-9453601 None:intergenic 55.0%
GCATCGCTATGGTCCTTTGG+CGG + chr1_3:9453627-9453646 Msa0102590:CDS 55.0%
AGAGTTGGCACAACCGCCAA+AGG - chr1_3:9453643-9453662 None:intergenic 55.0%
TAGCTTGGCCTCCTGCACAA+AGG - chr1_3:9453909-9453928 None:intergenic 55.0%
! CAGTGGTGGTTTCGCCGGTT+TGG - chr1_3:9452034-9452053 None:intergenic 60.0%
GGTGACAGTGGTGGTTTCGC+CGG - chr1_3:9452039-9452058 None:intergenic 60.0%
TGTCACCGCACCAGCCTCAT+GGG + chr1_3:9452052-9452071 Msa0102590:CDS 60.0%
GTAACCGGCGATTGTGGCTC+CGG + chr1_3:9452134-9452153 Msa0102590:CDS 60.0%
CTTTCCGGAGCCACAATCGC+CGG - chr1_3:9452141-9452160 None:intergenic 60.0%
CCTATGCTAGTCGCCCCTCA+GGG + chr1_3:9452275-9452294 Msa0102590:CDS 60.0%
TCTCAACGGCGCGTGTCCTT+CGG + chr1_3:9452340-9452359 Msa0102590:CDS 60.0%
TATTGCTGCAGCGGCGCGTA+TGG + chr1_3:9452440-9452459 Msa0102590:CDS 60.0%
ATTGCTGCAGCGGCGCGTAT+GGG + chr1_3:9452441-9452460 Msa0102590:CDS 60.0%
TGAGGCTGGTGCGGTGACAG+TGG - chr1_3:9452051-9452070 None:intergenic 65.0%
CTGTCACCGCACCAGCCTCA+TGG + chr1_3:9452051-9452070 Msa0102590:CDS 65.0%
GTCACCGCACCAGCCTCATG+GGG + chr1_3:9452053-9452072 Msa0102590:CDS 65.0%
CTCATGGGGCGGCCGTTTCT+GGG + chr1_3:9452067-9452086 Msa0102590:CDS 65.0%
TCATGGGGCGGCCGTTTCTG+GGG + chr1_3:9452068-9452087 Msa0102590:CDS 65.0%
CGGCGATTGTGGCTCCGGAA+AGG + chr1_3:9452139-9452158 Msa0102590:CDS 65.0%
GGCTAAAGTTGCCGGCGGTG+TGG - chr1_3:9452186-9452205 None:intergenic 65.0%
GCCTATGCTAGTCGCCCCTC+AGG + chr1_3:9452274-9452293 Msa0102590:CDS 65.0%
CCCTGAGGGGCGACTAGCAT+AGG - chr1_3:9452278-9452297 None:intergenic 65.0%
ATGCTAGTCGCCCCTCAGGG+CGG + chr1_3:9452278-9452297 Msa0102590:CDS 65.0%
TATCGCCAGAGCCGCCCTGA+GGG - chr1_3:9452292-9452311 None:intergenic 65.0%
TTATCGCCAGAGCCGCCCTG+AGG - chr1_3:9452293-9452312 None:intergenic 65.0%
GCGCCGCTGCAGCAATACTC+CGG - chr1_3:9452437-9452456 None:intergenic 65.0%
GGCTGGTGCGGTGACAGTGG+TGG - chr1_3:9452048-9452067 None:intergenic 70.0%
ACCGCACCAGCCTCATGGGG+CGG + chr1_3:9452056-9452075 Msa0102590:CDS 70.0%
AAACGGCCGCCCCATGAGGC+TGG - chr1_3:9452065-9452084 None:intergenic 70.0%
CCAGAAACGGCCGCCCCATG+AGG - chr1_3:9452069-9452088 None:intergenic 70.0%
CCTCATGGGGCGGCCGTTTC+TGG + chr1_3:9452066-9452085 Msa0102590:CDS 70.0%
TGGCAACGGAGCCACACCGC+CGG + chr1_3:9452172-9452191 Msa0102590:CDS 70.0%
ATCGCCAGAGCCGCCCTGAG+GGG - chr1_3:9452291-9452310 None:intergenic 70.0%
GCCGCCCCATGAGGCTGGTG+CGG - chr1_3:9452060-9452079 None:intergenic 75.0%
! GTCGCCCCTCAGGGCGGCTC+TGG + chr1_3:9452284-9452303 Msa0102590:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9451449 9454152 9451449 ID=Msa0102590;Name=Msa0102590
chr1_3 mRNA 9451449 9454152 9451449 ID=Msa0102590-mRNA-1;Parent=Msa0102590;Name=Msa0102590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=254|1|1|1|1|1|3|485|325
chr1_3 exon 9451449 9451769 9451449 ID=Msa0102590-mRNA-1:exon:3801;Parent=Msa0102590-mRNA-1
chr1_3 exon 9451922 9452618 9451922 ID=Msa0102590-mRNA-1:exon:3802;Parent=Msa0102590-mRNA-1
chr1_3 exon 9453454 9454152 9453454 ID=Msa0102590-mRNA-1:exon:3803;Parent=Msa0102590-mRNA-1
chr1_3 five_prime_UTR 9451449 9451702 9451449 ID=Msa0102590-mRNA-1:five_prime_utr;Parent=Msa0102590-mRNA-1
chr1_3 CDS 9451703 9451769 9451703 ID=Msa0102590-mRNA-1:cds;Parent=Msa0102590-mRNA-1
chr1_3 CDS 9451922 9452618 9451922 ID=Msa0102590-mRNA-1:cds;Parent=Msa0102590-mRNA-1
chr1_3 CDS 9453454 9453667 9453454 ID=Msa0102590-mRNA-1:cds;Parent=Msa0102590-mRNA-1
chr1_3 three_prime_UTR 9453668 9454152 9453668 ID=Msa0102590-mRNA-1:three_prime_utr;Parent=Msa0102590-mRNA-1
Gene Sequence

>Msa0102590

ATGGATCACCACCACCAAGCACTATCAATTTTTTCATTCTTACTAGCACTTCATTTATCAATTTCAGGTGTAATTTCAACAACATTCACATTTGTTAACAAATGTGACTACACAGTGTGGCCAGGGATTCTTTCAAATGCTGGGGTCCCAACACTTCCAACCACAGGCTTTGTTCTCCAAACCGGCGAAACCACCACTGTCACCGCACCAGCCTCATGGGGCGGCCGTTTCTGGGGCAGAACTCTTTGCTCCCAAGACACTGATGGAAAATTCTCATGTGTAACCGGCGATTGTGGCTCCGGAAAGGTTGAATGCTCTGGCAACGGAGCCACACCGCCGGCAACTTTAGCCGAATTCACATTAGACGGCTCTGGTGGGCTTGACTTCTTCGATGTTAGTCTTGTTGACGGTTACAATGTGCCTATGCTAGTCGCCCCTCAGGGCGGCTCTGGCGATAATTGCACTACCACGGGATGTATCAGTGATCTCAACGGCGCGTGTCCTTCGGAGCTTAGAGTGATGAGTGTGGATGGGAAAGACGGTGTCGCGTGTAAGAGCGCATGCGAAGCTTTTAATTCACCGGAGTATTGCTGCAGCGGCGCGTATGGGACACCAGACACTTGCAAACCTTCTACTTATTCTCAATTGTTTAAGAACGCCTGCCCACGTGCATATAGCTATGCTTATGATGATAAGACCAGCACTTTCACTTGTGCAAATGCAGTAGATTATACTATCACATTTTGTTCTTCTCCAACCACAAGTCAAAAGGCAACACAAGGGCAAGACACAAAACAAGAAAGTTCTTCTAACTCTGCCTCACCTCAGCTTAGCAATGACAATACAATGGTGTATGAAGGTGGTATTGATCAAAGTGAAATTTCACAAGCCATGTGCACCCATGTGCTCCAATCACAAACTATTGCGTGCATTATTAGCATCGCTATGGTCCTTTGGCGGTTGTGCCAACTCTTCTAA
Protein sequence

>Msa0102590

MDHHHQALSIFSFLLALHLSISGVISTTFTFVNKCDYTVWPGILSNAGVPTLPTTGFVLQTGETTTVTAPASWGGRFWGRTLCSQDTDGKFSCVTGDCGSGKVECSGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNVPMLVAPQGGSGDNCTTTGCISDLNGACPSELRVMSVDGKDGVACKSACEAFNSPEYCCSGAYGTPDTCKPSTYSQLFKNACPRAYSYAYDDKTSTFTCANAVDYTITFCSSPTTSQKATQGQDTKQESSSNSASPQLSNDNTMVYEGGIDQSEISQAMCTHVLQSQTIACIISIAMVLWRLCQLF*