AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307160 MtrunA17_Chr8g0346311 88.732 142 7 1 1 133 1 142 3.53e-90 258
Msa1307160 MtrunA17_Chr3g0127451 51.471 136 54 2 1 127 1 133 6.64e-46 145
Msa1307160 MtrunA17_Chr7g0276081 55.714 140 52 2 3 133 4 142 1.78e-45 144
Msa1307160 MtrunA17_Chr4g0010061 44.928 138 64 3 1 129 14 148 4.79e-41 133
Msa1307160 MtrunA17_Chr5g0419651 54.444 90 31 2 1 81 1 89 5.26e-28 99.8
Msa1307160 MtrunA17_Chr3g0134591 30.000 140 78 3 3 127 2 136 6.81e-20 79.7
Msa1307160 MtrunA17_Chr3g0115151 31.852 135 62 3 1 106 457 590 4.55e-15 70.5
Msa1307160 MtrunA17_Chr3g0115131 46.053 76 31 2 5 71 516 590 2.13e-14 68.6
Msa1307160 MtrunA17_Chr5g0424491 41.463 82 38 2 1 73 513 593 2.61e-13 65.5
Msa1307160 MtrunA17_Chr6g0486891 37.681 69 35 1 12 72 50 118 4.02e-13 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307160 AT5G53560.1 48.529 136 58 3 1 127 1 133 5.94e-45 143
Msa1307160 AT5G48810.1 48.889 135 59 2 1 126 1 134 1.37e-43 140
Msa1307160 AT2G32720.1 49.630 135 56 3 1 126 1 132 1.53e-42 137
Msa1307160 AT2G32720.2 50.000 114 45 3 22 126 22 132 1.63e-30 107
Msa1307160 AT2G46650.1 46.154 130 58 3 8 127 5 132 1.09e-28 102
Msa1307160 AT1G26340.1 46.512 86 37 1 1 77 1 86 2.88e-26 96.3
Msa1307160 AT1G37130.1 41.250 80 37 2 1 71 538 616 1.25e-14 69.7
Msa1307160 AT1G60660.1 41.176 68 32 1 12 71 53 120 1.54e-14 65.5
Msa1307160 AT1G77760.1 40.000 80 38 2 1 71 541 619 2.73e-13 65.9

Find 33 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTTGCTCTTCAGTACTA+TGG 0.296249 8_4:+2487104 Msa1307160:CDS
CCTGGTGCCGTTGCTGATAT+TGG 0.324237 8_4:+2487076 Msa1307160:CDS
ATTCATTACTTAAGATTCAT+TGG 0.334499 8_4:-2487141 None:intergenic
AGAAGATTGATTGCTGCTTA+TGG 0.334533 8_4:-2487027 None:intergenic
ATCAGAGACTTTAACCTTTG+AGG 0.335279 8_4:+2482791 Msa1307160:CDS
GACTTTAACCTTTGAGGATG+TGG 0.376866 8_4:+2482797 Msa1307160:CDS
ATAAGCAGCAATCAATCTTC+TGG 0.400727 8_4:+2487029 Msa1307160:CDS
TGATGGAAAAGTACTATGTC+GGG 0.401001 8_4:+2486937 Msa1307160:CDS
CTGGTGCCGTTGCTGATATT+GGG 0.414415 8_4:+2487077 Msa1307160:CDS
CTTATGGTAGATGCTTGAAT+TGG 0.417094 8_4:-2487011 None:intergenic
GATGCTTGAATTGGTGCTGT+TGG 0.425349 8_4:-2487002 None:intergenic
CTGGATCATAGTCAACAAAA+AGG 0.426357 8_4:+2482845 Msa1307160:CDS
GGATTGTTCTTAGCTGCTGC+TGG 0.435494 8_4:-2486981 None:intergenic
AATCTTGCAGTTGAAGAAGA+TGG 0.435798 8_4:+2482761 Msa1307160:intron
TAAGTAATGAATTTGAACTT+TGG 0.441457 8_4:+2487152 Msa1307160:exon
GTGGCCAACATCTTCAAAAT+CGG 0.455103 8_4:-2486895 None:intergenic
CGCAATCTAGCATGAATAAG+AGG 0.472461 8_4:-2487319 None:intergenic
ACAATAACAAGAACGATTGC+TGG 0.477730 8_4:+2482826 Msa1307160:CDS
GTTGAAGTTCTTGCAGTACC+TGG 0.488377 8_4:+2487058 Msa1307160:CDS
TAATAATCTATATCAACATA+AGG 0.507284 8_4:+2487216 Msa1307160:three_prime_UTR
CCAATATCAGCAACGGCACC+AGG 0.516481 8_4:-2487076 None:intergenic
ATCTTGCAGTTGAAGAAGAT+GGG 0.518015 8_4:+2482762 Msa1307160:intron
TGACTCGGCAACAGAGATGA+TGG 0.533371 8_4:+2486920 Msa1307160:CDS
ATGATGGAAAAGTACTATGT+CGG 0.538408 8_4:+2486936 Msa1307160:CDS
AGCTGCTGCTGGAAGAGTGT+TGG 0.552849 8_4:-2486970 None:intergenic
GAGATATTATATCAGAGTCA+TGG 0.553803 8_4:-2487343 None:intergenic
GTGCTTAGCCACATCCTCAA+AGG 0.580670 8_4:-2482805 None:intergenic
AGATGTTGGCCACAGTGACT+CGG 0.590642 8_4:+2486905 Msa1307160:CDS
GCCAACATCTTCAAAATCGG+TGG 0.624406 8_4:-2486892 None:intergenic
GCAGATCCCAATATCAGCAA+CGG 0.642745 8_4:-2487083 None:intergenic
GATGGAAAAGTACTATGTCG+GGG 0.689368 8_4:+2486938 Msa1307160:CDS
TCTCTGTTGCCGAGTCACTG+TGG 0.717695 8_4:-2486914 None:intergenic
GGAAAAGTACTATGTCGGGG+AGG 0.724893 8_4:+2486941 Msa1307160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATATATTTTATTTT+GGG - chr8_4:2485290-2485309 None:intergenic 0.0%
!!! ATATTAAATATATTTTATTT+TGG - chr8_4:2485291-2485310 None:intergenic 0.0%
!!! AAAATCTGATTATTTTTTTT+TGG + chr8_4:2482657-2482676 Msa1307160:intron 10.0%
!!! AAATCTGATTATTTTTTTTT+GGG + chr8_4:2482658-2482677 Msa1307160:intron 10.0%
!! TATTGTAGTTAAAAAAAAAT+TGG + chr8_4:2484037-2484056 Msa1307160:intron 10.0%
!! ATTGTAGTTAAAAAAAAATT+GGG + chr8_4:2484038-2484057 Msa1307160:intron 10.0%
!!! ACTGTTTTTTTTTTTTTTTT+GGG - chr8_4:2485220-2485239 None:intergenic 10.0%
!!! TACTGTTTTTTTTTTTTTTT+TGG - chr8_4:2485221-2485240 None:intergenic 10.0%
!! AAGTAATGAAATTTATATTT+AGG + chr8_4:2486110-2486129 Msa1307160:intron 10.0%
!! AAAAACTAAATTGGAATAAA+AGG - chr8_4:2483405-2483424 None:intergenic 15.0%
!!! ATAAATTTATACTCTTTTTG+AGG - chr8_4:2483718-2483737 None:intergenic 15.0%
!! TTGTAGTTAAAAAAAAATTG+GGG + chr8_4:2484039-2484058 Msa1307160:intron 15.0%
!!! AATATGTTTTGATAATTAGA+CGG - chr8_4:2484245-2484264 None:intergenic 15.0%
!!! TTTTTTAAACATAAGTATTG+TGG + chr8_4:2484604-2484623 Msa1307160:intron 15.0%
!! TTTAAATTAGTAAACTCTTA+TGG + chr8_4:2484723-2484742 Msa1307160:intron 15.0%
!! TTAAATTAGTAAACTCTTAT+GGG + chr8_4:2484724-2484743 Msa1307160:intron 15.0%
!!! TTTCTGTTTTTTTTCTTTTT+CGG + chr8_4:2485383-2485402 Msa1307160:intron 15.0%
!!! AGAGATTTTAAAAAGTAAAT+AGG - chr8_4:2485550-2485569 None:intergenic 15.0%
!! TATAAATTTATGTTGTTAGA+TGG + chr8_4:2486051-2486070 Msa1307160:intron 15.0%
!! TAATAATCTATATCAACATA+AGG + chr8_4:2487216-2487235 Msa1307160:three_prime_UTR 15.0%
!!! ATATCTCAAATATTTTGAAA+TGG + chr8_4:2487359-2487378 Msa1307160:three_prime_UTR 15.0%
!!! ATTTTAAGAACTGAAAATGA+AGG - chr8_4:2482642-2482661 None:intergenic 20.0%
!!! TTATGTTATTGTCTAGTTTT+TGG + chr8_4:2483195-2483214 Msa1307160:intron 20.0%
!! TAAATTGGAATAAAAGGTTA+TGG - chr8_4:2483399-2483418 None:intergenic 20.0%
!!! TTTTTCAATTTTTTTTGGCT+TGG + chr8_4:2483429-2483448 Msa1307160:intron 20.0%
!!! TTTTAAACTTTCTCGATTTT+GGG - chr8_4:2483565-2483584 None:intergenic 20.0%
!!! TTTTTAAACTTTCTCGATTT+TGG - chr8_4:2483566-2483585 None:intergenic 20.0%
!! TAAACATTCAATCTCTTATT+GGG - chr8_4:2483676-2483695 None:intergenic 20.0%
!! TTAAACATTCAATCTCTTAT+TGG - chr8_4:2483677-2483696 None:intergenic 20.0%
!! TGTAGTTAAAAAAAAATTGG+GGG + chr8_4:2484040-2484059 Msa1307160:intron 20.0%
!! ACAATATTAAAGCAAAATGT+TGG - chr8_4:2484067-2484086 None:intergenic 20.0%
!!! TTTTGCTTTAATATTGTATG+TGG + chr8_4:2484070-2484089 Msa1307160:intron 20.0%
!!! GCATCTAATTTTATACTAAT+TGG + chr8_4:2484092-2484111 Msa1307160:intron 20.0%
!!! TTTAACTTGTTTGCATTAAA+AGG + chr8_4:2484115-2484134 Msa1307160:intron 20.0%
!!! TTTGAATTTGCTGTAAAAAT+TGG + chr8_4:2484164-2484183 Msa1307160:intron 20.0%
!! AAAAATTGGATAAAGTTACA+TGG + chr8_4:2484178-2484197 Msa1307160:intron 20.0%
!! AATGATGAGAGAAAAAAAAA+AGG - chr8_4:2484290-2484309 None:intergenic 20.0%
!! AAAAAAAAAACAGAAAGACA+TGG + chr8_4:2485138-2485157 Msa1307160:intron 20.0%
!! AAAAAAAAACAGTAGAATTG+TGG + chr8_4:2485227-2485246 Msa1307160:intron 20.0%
!! AAAAAAAACAGTAGAATTGT+GGG + chr8_4:2485228-2485247 Msa1307160:intron 20.0%
!!! TTCTGTTTTTTTTCTTTTTC+GGG + chr8_4:2485384-2485403 Msa1307160:intron 20.0%
!!! TACTTTTTAAAATCTCTTAG+AGG + chr8_4:2485553-2485572 Msa1307160:intron 20.0%
!! TATTTATTAGTAGCAATGTA+GGG - chr8_4:2485726-2485745 None:intergenic 20.0%
!! TTATTTATTAGTAGCAATGT+AGG - chr8_4:2485727-2485746 None:intergenic 20.0%
!!! ATTTCTCTCTAAGATTAAAA+TGG - chr8_4:2485976-2485995 None:intergenic 20.0%
!! GTATTCCTATGTTTATTATA+GGG - chr8_4:2486201-2486220 None:intergenic 20.0%
!! TGTATTCCTATGTTTATTAT+AGG - chr8_4:2486202-2486221 None:intergenic 20.0%
!!! TTTGTACTTTTGTTATTAGT+AGG + chr8_4:2486283-2486302 Msa1307160:intron 20.0%
!!! ATTTTTCACATGACTAAAAT+GGG - chr8_4:2486488-2486507 None:intergenic 20.0%
!!! GTTGTTATTTATTATTCTCA+GGG + chr8_4:2486663-2486682 Msa1307160:intron 20.0%
!! ATTCATTACTTAAGATTCAT+TGG - chr8_4:2487144-2487163 None:intergenic 20.0%
!! TAAGTAATGAATTTGAACTT+TGG + chr8_4:2487152-2487171 Msa1307160:exon 20.0%
! AGGAATATGAATATGATTCA+TGG + chr8_4:2483055-2483074 Msa1307160:intron 25.0%
! TGAATATGATTCATGGTATT+AGG + chr8_4:2483062-2483081 Msa1307160:intron 25.0%
! GAATATGATTCATGGTATTA+GGG + chr8_4:2483063-2483082 Msa1307160:intron 25.0%
! TAGAATACACATTGAATTCA+GGG - chr8_4:2483241-2483260 None:intergenic 25.0%
! ATAGAATACACATTGAATTC+AGG - chr8_4:2483242-2483261 None:intergenic 25.0%
!! TGATCTGTCAATAATTTGTA+TGG + chr8_4:2483298-2483317 Msa1307160:intron 25.0%
!! ATGTAGTCATTCTAATTTGT+AGG - chr8_4:2483514-2483533 None:intergenic 25.0%
! TTAATACTCACTCTCTAATT+GGG + chr8_4:2483611-2483630 Msa1307160:intron 25.0%
!! TTAAATCAATGTGAAGTGTT+GGG + chr8_4:2483634-2483653 Msa1307160:intron 25.0%
!!! GAAATTAGATGGATTTTTGA+AGG - chr8_4:2483760-2483779 None:intergenic 25.0%
! ATGATGCAAAAAAACTGTAA+TGG - chr8_4:2483794-2483813 None:intergenic 25.0%
! TTAGACTCTATTTATATCAG+TGG - chr8_4:2484144-2484163 None:intergenic 25.0%
!!! TAAAGTTACATGGTTTTAGA+AGG + chr8_4:2484188-2484207 Msa1307160:intron 25.0%
! CATATTCATACTGTGAAAAT+TGG + chr8_4:2484259-2484278 Msa1307160:intron 25.0%
! CACTAAAAGTTAAAAATCCA+TGG - chr8_4:2484508-2484527 None:intergenic 25.0%
! ATCAATGAAACTATAATGCT+AGG + chr8_4:2484560-2484579 Msa1307160:intron 25.0%
! AAATATCCAACATTCTAACT+TGG - chr8_4:2484642-2484661 None:intergenic 25.0%
! AATTTGCAAAGATTTAACCA+GGG - chr8_4:2484931-2484950 None:intergenic 25.0%
! AGAAAAAAAACAGAAAGACA+CGG - chr8_4:2485379-2485398 None:intergenic 25.0%
!!! TTTTTAAAATCTCTTAGAGG+AGG + chr8_4:2485556-2485575 Msa1307160:intron 25.0%
! AGTATTTCATATTACTCAGT+GGG + chr8_4:2485672-2485691 Msa1307160:intron 25.0%
! TTCTTAAACGAAATAATCAG+TGG - chr8_4:2485769-2485788 None:intergenic 25.0%
! GTATTTATCATGTTACTGAT+GGG - chr8_4:2485896-2485915 None:intergenic 25.0%
! TACTTTAAACAAACGCATTT+CGG - chr8_4:2486095-2486114 None:intergenic 25.0%
! ATTACAATGGAATACAAGTT+AGG - chr8_4:2486334-2486353 None:intergenic 25.0%
! AACTTGTATTCCATTGTAAT+AGG + chr8_4:2486334-2486353 Msa1307160:intron 25.0%
! ACATCATATACCTATTACAA+TGG - chr8_4:2486347-2486366 None:intergenic 25.0%
!! CATTTTTCACATGACTAAAA+TGG - chr8_4:2486489-2486508 None:intergenic 25.0%
!!! CATTTTAGTCATGTGAAAAA+TGG + chr8_4:2486487-2486506 Msa1307160:intron 25.0%
!!! CTGTCTCAAATTATTTTTCT+CGG + chr8_4:2486631-2486650 Msa1307160:intron 25.0%
!!! CGTTGTTATTTATTATTCTC+AGG + chr8_4:2486662-2486681 Msa1307160:intron 25.0%
!!! TGTGTTTTATTATCATGTAG+AGG + chr8_4:2487270-2487289 Msa1307160:three_prime_UTR 25.0%
!!! GTGTTTTATTATCATGTAGA+GGG + chr8_4:2487271-2487290 Msa1307160:three_prime_UTR 25.0%
!! TTTGTGTTCTTGATTTTCTA+TGG + chr8_4:2487296-2487315 Msa1307160:three_prime_UTR 25.0%
ACTGAGAATGATTGTGATAT+AGG + chr8_4:2483035-2483054 Msa1307160:intron 30.0%
CATTAGATCATGTCATGATA+TGG - chr8_4:2483355-2483374 None:intergenic 30.0%
! TCTAATTTGTAGGAAGATCA+AGG - chr8_4:2483504-2483523 None:intergenic 30.0%
GTTAATACTCACTCTCTAAT+TGG + chr8_4:2483610-2483629 Msa1307160:intron 30.0%
GTTAAATCAATGTGAAGTGT+TGG + chr8_4:2483633-2483652 Msa1307160:intron 30.0%
!! ATGGATTTTTGAAGGAAATG+AGG - chr8_4:2483752-2483771 None:intergenic 30.0%
TTAACATCACGGAAATTAGA+TGG - chr8_4:2483771-2483790 None:intergenic 30.0%
AACTGTAATGGTTAACATCA+CGG - chr8_4:2483782-2483801 None:intergenic 30.0%
! TGCATACATATTAAGAGTGT+CGG - chr8_4:2483909-2483928 None:intergenic 30.0%
!! TTTCTCTCATCATTTTGACA+TGG + chr8_4:2484296-2484315 Msa1307160:intron 30.0%
! TATATTTTGCACAGTTGCAA+AGG - chr8_4:2484325-2484344 None:intergenic 30.0%
AATTGCTAAAGAGTGAAGAA+CGG - chr8_4:2484459-2484478 None:intergenic 30.0%
TCATTACCAAGTTAGAATGT+TGG + chr8_4:2484633-2484652 Msa1307160:intron 30.0%
! AGTGTTGAAAACATCTACAA+TGG - chr8_4:2484694-2484713 None:intergenic 30.0%
ATGATTAATCTAGTAACAGC+TGG - chr8_4:2484841-2484860 None:intergenic 30.0%
GAATTTGCAAAGATTTAACC+AGG - chr8_4:2484932-2484951 None:intergenic 30.0%
GAGTATTTCATATTACTCAG+TGG + chr8_4:2485671-2485690 Msa1307160:intron 30.0%
GTATTTCATATTACTCAGTG+GGG + chr8_4:2485673-2485692 Msa1307160:intron 30.0%
TATTTCATATTACTCAGTGG+GGG + chr8_4:2485674-2485693 Msa1307160:intron 30.0%
CGTATTTATCATGTTACTGA+TGG - chr8_4:2485897-2485916 None:intergenic 30.0%
AATACGATCTTTCATATGAG+TGG + chr8_4:2485911-2485930 Msa1307160:intron 30.0%
GAGAAATATGAACTCATCAT+TGG + chr8_4:2485989-2486008 Msa1307160:intron 30.0%
TTAGATGGCATAAACTACAT+TGG + chr8_4:2486066-2486085 Msa1307160:intron 30.0%
TAGCACCCTATAATAAACAT+AGG + chr8_4:2486193-2486212 Msa1307160:intron 30.0%
ACACATTCACATGAATGAAT+GGG - chr8_4:2486234-2486253 None:intergenic 30.0%
AACACATTCACATGAATGAA+TGG - chr8_4:2486235-2486254 None:intergenic 30.0%
! ATATGATGTTACCCCATTTT+TGG + chr8_4:2486358-2486377 Msa1307160:CDS 30.0%
! TCATGTCTTTAAAGAAGGTA+GGG + chr8_4:2486602-2486621 Msa1307160:intron 30.0%
TGAGTTGCTGAAAAAAACTA+CGG - chr8_4:2486702-2486721 None:intergenic 30.0%
! TTTTCTTGCTCTCTTCTTAT+AGG - chr8_4:2486794-2486813 None:intergenic 30.0%
ACATTCAACTAACAATCTTC+TGG + chr8_4:2486845-2486864 Msa1307160:intron 30.0%
!! ATGATGGAAAAGTACTATGT+CGG + chr8_4:2486936-2486955 Msa1307160:CDS 30.0%
GAGATATTATATCAGAGTCA+TGG - chr8_4:2487346-2487365 None:intergenic 30.0%
!! TACAAGATTTTGACAGAGGT+TGG - chr8_4:2482589-2482608 None:intergenic 35.0%
!! TGCTTACAAGATTTTGACAG+AGG - chr8_4:2482593-2482612 None:intergenic 35.0%
AATCTTGCAGTTGAAGAAGA+TGG + chr8_4:2482761-2482780 Msa1307160:intron 35.0%
ATCTTGCAGTTGAAGAAGAT+GGG + chr8_4:2482762-2482781 Msa1307160:intron 35.0%
ATCAGAGACTTTAACCTTTG+AGG + chr8_4:2482791-2482810 Msa1307160:CDS 35.0%
ACAATAACAAGAACGATTGC+TGG + chr8_4:2482826-2482845 Msa1307160:CDS 35.0%
CTGGATCATAGTCAACAAAA+AGG + chr8_4:2482845-2482864 Msa1307160:CDS 35.0%
!!! GGTATTAGGGTTTTAAACTG+CGG + chr8_4:2483076-2483095 Msa1307160:intron 35.0%
GACAGATCAAAATACTCTTG+TGG - chr8_4:2483287-2483306 None:intergenic 35.0%
CACTCTTAATATGTATGCAG+TGG + chr8_4:2483910-2483929 Msa1307160:intron 35.0%
TAATATGTATGCAGTGGTGT+TGG + chr8_4:2483916-2483935 Msa1307160:intron 35.0%
!! ATCACATTCTCAGCTTGTTA+TGG + chr8_4:2484352-2484371 Msa1307160:intron 35.0%
!! TCACATTCTCAGCTTGTTAT+GGG + chr8_4:2484353-2484372 Msa1307160:intron 35.0%
AGATTCAACTTGGTAGAGTT+AGG - chr8_4:2484409-2484428 None:intergenic 35.0%
CAATGAAGCTAGATTCAACT+TGG - chr8_4:2484419-2484438 None:intergenic 35.0%
GGACAAATTGACAAATCACA+AGG - chr8_4:2484487-2484506 None:intergenic 35.0%
! GTGATTTGTCAATTTGTCCA+TGG + chr8_4:2484488-2484507 Msa1307160:intron 35.0%
! CTATAATGCTAGGTCTTTTC+TGG + chr8_4:2484570-2484589 Msa1307160:intron 35.0%
!! TTGAGTTGATAACCTTGCTT+TGG + chr8_4:2484781-2484800 Msa1307160:intron 35.0%
AGATTAGATTCTCCAAAGCA+AGG - chr8_4:2484796-2484815 None:intergenic 35.0%
GAAGACTTTGCTACTCTAAA+CGG - chr8_4:2484903-2484922 None:intergenic 35.0%
! GCTGATTATGAAGATTGGTT+TGG - chr8_4:2485003-2485022 None:intergenic 35.0%
TTTCAAAACGACTGCTATGT+AGG + chr8_4:2485255-2485274 Msa1307160:intron 35.0%
!!! AGTTTTGAGATGAGAAAGCA+AGG - chr8_4:2485481-2485500 None:intergenic 35.0%
GAGTAATATGAAATACTCCG+TGG - chr8_4:2485669-2485688 None:intergenic 35.0%
TTCGTTTAAGAACTAGCATC+AGG + chr8_4:2485777-2485796 Msa1307160:intron 35.0%
! GAACTCATCATTGGTTACTT+CGG + chr8_4:2485998-2486017 Msa1307160:intron 35.0%
TATTTAGGAATAACTTCCCC+AGG + chr8_4:2486125-2486144 Msa1307160:intron 35.0%
ATTTCCATCATTGCTTTCCT+GGG - chr8_4:2486145-2486164 None:intergenic 35.0%
AATTTCCATCATTGCTTTCC+TGG - chr8_4:2486146-2486165 None:intergenic 35.0%
!! GTCTCGGTTTATTTTTCTCA+GGG - chr8_4:2486553-2486572 None:intergenic 35.0%
!! TGTCTCGGTTTATTTTTCTC+AGG - chr8_4:2486554-2486573 None:intergenic 35.0%
! TTGCCTCATGTCTTTAAAGA+AGG + chr8_4:2486597-2486616 Msa1307160:intron 35.0%
! CTACCTTCTTTAAAGACATG+AGG - chr8_4:2486603-2486622 None:intergenic 35.0%
! CTCATGTCTTTAAAGAAGGT+AGG + chr8_4:2486601-2486620 Msa1307160:intron 35.0%
! CATGTCTTTAAAGAAGGTAG+GGG + chr8_4:2486603-2486622 Msa1307160:intron 35.0%
GAGTTGCTGAAAAAAACTAC+GGG - chr8_4:2486701-2486720 None:intergenic 35.0%
! AATCTTCTGGTGTTTTACAC+AGG + chr8_4:2486858-2486877 Msa1307160:intron 35.0%
! ATCTTCTGGTGTTTTACACA+GGG + chr8_4:2486859-2486878 Msa1307160:intron 35.0%
!! TGATGGAAAAGTACTATGTC+GGG + chr8_4:2486937-2486956 Msa1307160:CDS 35.0%
CTTATGGTAGATGCTTGAAT+TGG - chr8_4:2487014-2487033 None:intergenic 35.0%
! AGAAGATTGATTGCTGCTTA+TGG - chr8_4:2487030-2487049 None:intergenic 35.0%
ATAAGCAGCAATCAATCTTC+TGG + chr8_4:2487029-2487048 Msa1307160:CDS 35.0%
!!! GGCTATAGTTTTAGACTCTT+TGG + chr8_4:2487173-2487192 Msa1307160:three_prime_UTR 35.0%
! ACATAAGGCAGTGTTCTTTT+TGG + chr8_4:2487231-2487250 Msa1307160:three_prime_UTR 35.0%
! GACTTTAACCTTTGAGGATG+TGG + chr8_4:2482797-2482816 Msa1307160:CDS 40.0%
! CAAAATACTCTTGTGGACTG+TGG - chr8_4:2483280-2483299 None:intergenic 40.0%
!! AGTATTAACGAGAGTGTTGC+TGG - chr8_4:2483599-2483618 None:intergenic 40.0%
!! TGAAGTGTTGGGACATACAT+TGG + chr8_4:2483645-2483664 Msa1307160:intron 40.0%
ACAGGGGGTTAATAGACATT+TGG - chr8_4:2483828-2483847 None:intergenic 40.0%
TATTAACCCCCTGTTATGAG+AGG + chr8_4:2483834-2483853 Msa1307160:intron 40.0%
TTCCTTACCTCTCATAACAG+GGG - chr8_4:2483844-2483863 None:intergenic 40.0%
GTTCCTTACCTCTCATAACA+GGG - chr8_4:2483845-2483864 None:intergenic 40.0%
AGTTCCTTACCTCTCATAAC+AGG - chr8_4:2483846-2483865 None:intergenic 40.0%
AGGTAAGGAACTATGATGCA+CGG + chr8_4:2483854-2483873 Msa1307160:intron 40.0%
!!! GTGAGGATAATGGGAGTTTT+AGG + chr8_4:2484006-2484025 Msa1307160:intron 40.0%
!!! TAATGGGAGTTTTAGGCACA+AGG + chr8_4:2484013-2484032 Msa1307160:intron 40.0%
GACTTTAGACGCTAGAATAC+TGG - chr8_4:2484871-2484890 None:intergenic 40.0%
AGCCATGTTCACTGAAGTAA+CGG + chr8_4:2484975-2484994 Msa1307160:intron 40.0%
TTCCGTTACTTCAGTGAACA+TGG - chr8_4:2484980-2484999 None:intergenic 40.0%
GTGCAGCTGATTATGAAGAT+TGG - chr8_4:2485008-2485027 None:intergenic 40.0%
GACTCTGCAAAGACACAATT+TGG + chr8_4:2485165-2485184 Msa1307160:intron 40.0%
AAAGACACAATTTGGCGACA+CGG + chr8_4:2485173-2485192 Msa1307160:intron 40.0%
AACGACTGCTATGTAGGATT+TGG + chr8_4:2485261-2485280 Msa1307160:intron 40.0%
TGCAATTTACTCTGAGCACT+TGG + chr8_4:2485583-2485602 Msa1307160:intron 40.0%
GCAATTTACTCTGAGCACTT+GGG + chr8_4:2485584-2485603 Msa1307160:intron 40.0%
CAATTTACTCTGAGCACTTG+GGG + chr8_4:2485585-2485604 Msa1307160:intron 40.0%
! AGACAGCAAACTTTAAGGGA+GGG - chr8_4:2485617-2485636 None:intergenic 40.0%
! TAGACAGCAAACTTTAAGGG+AGG - chr8_4:2485618-2485637 None:intergenic 40.0%
!! TCCCTTAAAGTTTGCTGTCT+AGG + chr8_4:2485617-2485636 Msa1307160:intron 40.0%
CCCTAGACAGCAAACTTTAA+GGG - chr8_4:2485621-2485640 None:intergenic 40.0%
!! CCCTTAAAGTTTGCTGTCTA+GGG + chr8_4:2485618-2485637 Msa1307160:intron 40.0%
!! CCTTAAAGTTTGCTGTCTAG+GGG + chr8_4:2485619-2485638 Msa1307160:intron 40.0%
!! CTTAAAGTTTGCTGTCTAGG+GGG + chr8_4:2485620-2485639 Msa1307160:intron 40.0%
CAAGCCACTGAAATATTCCA+CGG + chr8_4:2485649-2485668 Msa1307160:intron 40.0%
TACTCCGTGGAATATTTCAG+TGG - chr8_4:2485656-2485675 None:intergenic 40.0%
TAGTAGCAATGTAGGGACTT+GGG - chr8_4:2485719-2485738 None:intergenic 40.0%
TTAGTAGCAATGTAGGGACT+TGG - chr8_4:2485720-2485739 None:intergenic 40.0%
!! TTGGCTGGTTTATAGACCAA+CGG + chr8_4:2485855-2485874 Msa1307160:intron 40.0%
TTGGTTACTTCGGCAAACTT+CGG + chr8_4:2486008-2486027 Msa1307160:intron 40.0%
TTTCCATCATTGCTTTCCTG+GGG - chr8_4:2486144-2486163 None:intergenic 40.0%
GGGATGATCATCCAAAAATG+GGG - chr8_4:2486372-2486391 None:intergenic 40.0%
CGGGATGATCATCCAAAAAT+GGG - chr8_4:2486373-2486392 None:intergenic 40.0%
!! CCATTTTTGGATGATCATCC+CGG + chr8_4:2486371-2486390 Msa1307160:CDS 40.0%
AGACATGAGGCAAAGTTGTT+CGG - chr8_4:2486590-2486609 None:intergenic 40.0%
CTTCTTATAGGCTATGACAG+AGG - chr8_4:2486782-2486801 None:intergenic 40.0%
!!! ACCACCGATTTTGAAGATGT+TGG + chr8_4:2486891-2486910 Msa1307160:CDS 40.0%
GTGGCCAACATCTTCAAAAT+CGG - chr8_4:2486898-2486917 None:intergenic 40.0%
!! GATGGAAAAGTACTATGTCG+GGG + chr8_4:2486938-2486957 Msa1307160:CDS 40.0%
GCATTTGCTCTTCAGTACTA+TGG + chr8_4:2487104-2487123 Msa1307160:CDS 40.0%
CGCAATCTAGCATGAATAAG+AGG - chr8_4:2487322-2487341 None:intergenic 40.0%
TGACGTCGCAGTAATGATTG+TGG + chr8_4:2483329-2483348 Msa1307160:intron 45.0%
TCCTTACCTCTCATAACAGG+GGG - chr8_4:2483843-2483862 None:intergenic 45.0%
TGTCTCCTTGTCTGTTGTGT+CGG + chr8_4:2483967-2483986 Msa1307160:intron 45.0%
TTATCCTCACCTGTCAAGCA+CGG - chr8_4:2483996-2484015 None:intergenic 45.0%
TGCTTGACAGGTGAGGATAA+TGG + chr8_4:2483996-2484015 Msa1307160:intron 45.0%
GCTTGACAGGTGAGGATAAT+GGG + chr8_4:2483997-2484016 Msa1307160:intron 45.0%
!! TCTCAGCTTGTTATGGGAGA+TGG + chr8_4:2484359-2484378 Msa1307160:intron 45.0%
!! ATGCTAGGTCTTTTCTGGTG+TGG + chr8_4:2484575-2484594 Msa1307160:intron 45.0%
ACTCTTATGGGTAGTGTCTG+CGG + chr8_4:2484736-2484755 Msa1307160:intron 45.0%
AGCAAAGTCTTCGATATCCC+TGG + chr8_4:2484911-2484930 Msa1307160:intron 45.0%
CCCCTAGACAGCAAACTTTA+AGG - chr8_4:2485622-2485641 None:intergenic 45.0%
CGTGGAATATTTCAGTGGCT+TGG - chr8_4:2485651-2485670 None:intergenic 45.0%
TATTACTCAGTGGGGGACTT+CGG + chr8_4:2485681-2485700 Msa1307160:intron 45.0%
TCAGTGGTAGAACTGCTTAG+TGG - chr8_4:2485753-2485772 None:intergenic 45.0%
CAACTGTGCACCTTCCAAAT+GGG + chr8_4:2485828-2485847 Msa1307160:intron 45.0%
TTCGGACAGGTCATGATATC+TGG + chr8_4:2486026-2486045 Msa1307160:intron 45.0%
GGGTGCTAGAAAATTCACTC+AGG - chr8_4:2486181-2486200 None:intergenic 45.0%
CCGGGATGATCATCCAAAAA+TGG - chr8_4:2486374-2486393 None:intergenic 45.0%
! TTTTTGGATGATCATCCCGG+AGG + chr8_4:2486374-2486393 Msa1307160:CDS 45.0%
GAGGCTTTACTTTCTGCTAC+AGG + chr8_4:2486401-2486420 Msa1307160:intron 45.0%
GGGTAGGAACAAAGTTGTCT+CGG - chr8_4:2486569-2486588 None:intergenic 45.0%
GACATGAGGCAAAGTTGTTC+GGG - chr8_4:2486589-2486608 None:intergenic 45.0%
! TCTGGTGTTTTACACAGGGA+AGG + chr8_4:2486863-2486882 Msa1307160:intron 45.0%
GCCAACATCTTCAAAATCGG+TGG - chr8_4:2486895-2486914 None:intergenic 45.0%
!! GATGCTTGAATTGGTGCTGT+TGG - chr8_4:2487005-2487024 None:intergenic 45.0%
GTTGAAGTTCTTGCAGTACC+TGG + chr8_4:2487058-2487077 Msa1307160:CDS 45.0%
GCAGATCCCAATATCAGCAA+CGG - chr8_4:2487086-2487105 None:intergenic 45.0%
!! AAAAAAAAAAAAAACTAAAT+TGG - chr8_4:2483414-2483433 None:intergenic 5.0%
!!! TTTTTTTTTTCAATTTTTTT+TGG + chr8_4:2483424-2483443 Msa1307160:intron 5.0%
GTGCTTAGCCACATCCTCAA+AGG - chr8_4:2482808-2482827 None:intergenic 50.0%
TGCGGTCTCAGTAACGATTG+TGG + chr8_4:2483094-2483113 Msa1307160:intron 50.0%
TCACATCACGAGCGATCTGA+TGG + chr8_4:2483117-2483136 Msa1307160:intron 50.0%
ACCCCCTGTTATGAGAGGTA+AGG + chr8_4:2483839-2483858 Msa1307160:intron 50.0%
ACGCGACACGCTTAATGCTA+AGG - chr8_4:2483883-2483902 None:intergenic 50.0%
GGAATCCGACACAACAGACA+AGG - chr8_4:2483975-2483994 None:intergenic 50.0%
AGAGTGAAGAACGGTGTGAC+TGG - chr8_4:2484450-2484469 None:intergenic 50.0%
GCTGCTTACAGGACAAGCTA+TGG - chr8_4:2484958-2484977 None:intergenic 50.0%
CAGTGAACATGGCTGCTTAC+AGG - chr8_4:2484969-2484988 None:intergenic 50.0%
TGAAGCACAGACACTGCTGT+TGG + chr8_4:2485035-2485054 Msa1307160:intron 50.0%
GCATCTGACACATGTCGTAC+CGG - chr8_4:2485095-2485114 None:intergenic 50.0%
GTACGACATGTGTCAGATGC+AGG + chr8_4:2485095-2485114 Msa1307160:intron 50.0%
GACACGTGTCTTTGCAGTGA+AGG - chr8_4:2485328-2485347 None:intergenic 50.0%
GACACTGCAAAGACACGGTT+TGG - chr8_4:2485352-2485371 None:intergenic 50.0%
GAAAGCAAGGACACTGCTGT+TGG - chr8_4:2485468-2485487 None:intergenic 50.0%
TTTACTCTGAGCACTTGGGG+AGG + chr8_4:2485588-2485607 Msa1307160:intron 50.0%
TTACTCTGAGCACTTGGGGA+GGG + chr8_4:2485589-2485608 Msa1307160:intron 50.0%
! CCATTTGGAAGGTGCACAGT+TGG - chr8_4:2485830-2485849 None:intergenic 50.0%
CCAACTGTGCACCTTCCAAA+TGG + chr8_4:2485827-2485846 Msa1307160:intron 50.0%
CACCTTCCAAATGGGTGGAT+TGG + chr8_4:2485836-2485855 Msa1307160:intron 50.0%
AGCCAATCCACCCATTTGGA+AGG - chr8_4:2485841-2485860 None:intergenic 50.0%
!! TTCCAAATGGGTGGATTGGC+TGG + chr8_4:2485840-2485859 Msa1307160:intron 50.0%
AACCAGCCAATCCACCCATT+TGG - chr8_4:2485845-2485864 None:intergenic 50.0%
TGTTACTGATGGGACCGAAG+AGG - chr8_4:2485886-2485905 None:intergenic 50.0%
TACTTCGGCAAACTTCGGAC+AGG + chr8_4:2486013-2486032 Msa1307160:intron 50.0%
CTTCCCCAGGAAAGCAATGA+TGG + chr8_4:2486138-2486157 Msa1307160:intron 50.0%
AAGTAAAGCCTCGTCACCTC+CGG - chr8_4:2486393-2486412 None:intergenic 50.0%
TGAGGCAAAGTTGTTCGGGT+AGG - chr8_4:2486585-2486604 None:intergenic 50.0%
AGATGTTGGCCACAGTGACT+CGG + chr8_4:2486905-2486924 Msa1307160:CDS 50.0%
! TGACTCGGCAACAGAGATGA+TGG + chr8_4:2486920-2486939 Msa1307160:CDS 50.0%
!! GGAAAAGTACTATGTCGGGG+AGG + chr8_4:2486941-2486960 Msa1307160:CDS 50.0%
GGATTGTTCTTAGCTGCTGC+TGG - chr8_4:2486984-2487003 None:intergenic 50.0%
!! CTGGTGCCGTTGCTGATATT+GGG + chr8_4:2487077-2487096 Msa1307160:CDS 50.0%
GCGATCTGATGGAGCTGATG+TGG + chr8_4:2483128-2483147 Msa1307160:intron 55.0%
CCTCGATTGTTGTCACGCTG+CGG + chr8_4:2483151-2483170 Msa1307160:intron 55.0%
TGTCGGATTCCGTGCTTGAC+AGG + chr8_4:2483984-2484003 Msa1307160:intron 55.0%
GATTCCGTGCTTGACAGGTG+AGG + chr8_4:2483989-2484008 Msa1307160:intron 55.0%
CAGCAGTGTCTGTGCTTCAG+AGG - chr8_4:2485034-2485053 None:intergenic 55.0%
AGCACAGACACTGCTGTTGG+TGG + chr8_4:2485038-2485057 Msa1307160:intron 55.0%
GCACAGACACTGCTGTTGGT+GGG + chr8_4:2485039-2485058 Msa1307160:intron 55.0%
CGACATGTGTCAGATGCAGG+TGG + chr8_4:2485098-2485117 Msa1307160:intron 55.0%
CATGTGTCAGATGCAGGTGG+CGG + chr8_4:2485101-2485120 Msa1307160:intron 55.0%
GCAGCGACACTGCAAAGACA+CGG - chr8_4:2485357-2485376 None:intergenic 55.0%
! GTCGTACTGGTGTCTGACAC+CGG + chr8_4:2485432-2485451 Msa1307160:intron 55.0%
! TCGTACTGGTGTCTGACACC+GGG + chr8_4:2485433-2485452 Msa1307160:intron 55.0%
! TGCTGTTGGTGGACATGTCC+CGG - chr8_4:2485454-2485473 None:intergenic 55.0%
AGCAAGGACACTGCTGTTGG+TGG - chr8_4:2485465-2485484 None:intergenic 55.0%
TTGGCGACATGGGAATCAGC+AGG - chr8_4:2485811-2485830 None:intergenic 55.0%
AGGTGCACAGTTGGCGACAT+GGG - chr8_4:2485821-2485840 None:intergenic 55.0%
AAGGTGCACAGTTGGCGACA+TGG - chr8_4:2485822-2485841 None:intergenic 55.0%
CTGTGCACCTTCCAAATGGG+TGG + chr8_4:2485831-2485850 Msa1307160:intron 55.0%
GACCAACGGATCTGCCTCTT+CGG + chr8_4:2485869-2485888 Msa1307160:intron 55.0%
AGTAAAGCCTCGTCACCTCC+GGG - chr8_4:2486392-2486411 None:intergenic 55.0%
TCTCTGTTGCCGAGTCACTG+TGG - chr8_4:2486917-2486936 None:intergenic 55.0%
! AGCTGCTGCTGGAAGAGTGT+TGG - chr8_4:2486973-2486992 None:intergenic 55.0%
CCAATATCAGCAACGGCACC+AGG - chr8_4:2487079-2487098 None:intergenic 55.0%
!! CCTGGTGCCGTTGCTGATAT+TGG + chr8_4:2487076-2487095 Msa1307160:CDS 55.0%
CCGCAGCGTGACAACAATCG+AGG - chr8_4:2483154-2483173 None:intergenic 60.0%
!! TGCTGTTGGTGGGCTTGTCC+CGG + chr8_4:2485049-2485068 Msa1307160:intron 60.0%
GTACGACACGTGCCAGATGC+AGG - chr8_4:2485419-2485438 None:intergenic 60.0%
GCATCTGGCACGTGTCGTAC+TGG + chr8_4:2485419-2485438 Msa1307160:intron 60.0%
TGGGGGACTTCGGCACATCA+TGG + chr8_4:2485691-2485710 Msa1307160:intron 60.0%
GACCGAAGAGGCAGATCCGT+TGG - chr8_4:2485874-2485893 None:intergenic 60.0%
TGATCATCCCGGAGGTGACG+AGG + chr8_4:2486382-2486401 Msa1307160:intron 60.0%
!! TGGTGGGCTTGTCCCGGTGT+CGG + chr8_4:2485055-2485074 Msa1307160:intron 65.0%
TCTGACGCGTGTCCGACACC+GGG - chr8_4:2485070-2485089 None:intergenic 65.0%
GTCTGACGCGTGTCCGACAC+CGG - chr8_4:2485071-2485090 None:intergenic 65.0%
GTCGGACACGCGTCAGACAC+CGG + chr8_4:2485073-2485092 Msa1307160:intron 65.0%
CACGTGCCAGATGCAGGTGG+CGG - chr8_4:2485413-2485432 None:intergenic 65.0%
CGACACGTGCCAGATGCAGG+TGG - chr8_4:2485416-2485435 None:intergenic 65.0%
GGGACACCGCCACCTGCATC+TGG + chr8_4:2485404-2485423 Msa1307160:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 2482525 2487516 2482525 ID=Msa1307160;Name=Msa1307160
chr8_4 mRNA 2482525 2487516 2482525 ID=Msa1307160-mRNA-1;Parent=Msa1307160;Name=Msa1307160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|0.66|0.75|1|0.66|0.75|4|362|133
chr8_4 exon 2482525 2482605 2482525 ID=Msa1307160-mRNA-1:exon:777;Parent=Msa1307160-mRNA-1
chr8_4 exon 2482771 2482866 2482771 ID=Msa1307160-mRNA-1:exon:778;Parent=Msa1307160-mRNA-1
chr8_4 exon 2486356 2486395 2486356 ID=Msa1307160-mRNA-1:exon:779;Parent=Msa1307160-mRNA-1
chr8_4 exon 2486880 2487516 2486880 ID=Msa1307160-mRNA-1:exon:780;Parent=Msa1307160-mRNA-1
chr8_4 five_prime_UTR 2482525 2482605 2482525 ID=Msa1307160-mRNA-1:five_prime_utr;Parent=Msa1307160-mRNA-1
chr8_4 five_prime_UTR 2482771 2482779 2482771 ID=Msa1307160-mRNA-1:five_prime_utr;Parent=Msa1307160-mRNA-1
chr8_4 CDS 2482780 2482866 2482780 ID=Msa1307160-mRNA-1:cds;Parent=Msa1307160-mRNA-1
chr8_4 CDS 2486356 2486395 2486356 ID=Msa1307160-mRNA-1:cds;Parent=Msa1307160-mRNA-1
chr8_4 CDS 2486880 2487154 2486880 ID=Msa1307160-mRNA-1:cds;Parent=Msa1307160-mRNA-1
chr8_4 three_prime_UTR 2487155 2487516 2487155 ID=Msa1307160-mRNA-1:three_prime_utr;Parent=Msa1307160-mRNA-1
Gene Sequence

>Msa1307160

ATGGGTTCAAAATCAGAGACTTTAACCTTTGAGGATGTGGCTAAGCACAATAACAAGAACGATTGCTGGATCATAGTCAACAAAAAGGTATATGATGTTACCCCATTTTTGGATGATCATCCCGGAGGGAAGGATGCTACCACCGATTTTGAAGATGTTGGCCACAGTGACTCGGCAACAGAGATGATGGAAAAGTACTATGTCGGGGAGGTTGACGCCAACACTCTTCCAGCAGCAGCTAAGAACAATCCAACAGCACCAATTCAAGCATCTACCATAAGCAGCAATCAATCTTCTGGAGTTTTGTTGAAGTTCTTGCAGTACCTGGTGCCGTTGCTGATATTGGGATCTGCATTTGCTCTTCAGTACTATGGAAAAAGAAGCAAGTCCAATGAATCTTAA

Protein sequence

>Msa1307160

MGSKSETLTFEDVAKHNNKNDCWIIVNKKVYDVTPFLDDHPGGKDATTDFEDVGHSDSATEMMEKYYVGEVDANTLPAAAKNNPTAPIQASTISSNQSSGVLLKFLQYLVPLLILGSAFALQYYGKRSKSNES*