Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1307160 | sp|P40934|CYB5_BRAOB | 50.000 | 136 | 56 | 3 | 1 | 127 | 1 | 133 | 2.04e-45 | 147 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1307160 | G7LAT7 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 1.52e-86 | 258 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001830 | Msa1307160 | 0.879271 | 1.427929e-69 | -8.615850e-47 |
Msa0004480 | Msa1307160 | 0.823260 | 1.524008e-53 | -8.615850e-47 |
Msa0008200 | Msa1307160 | 0.821627 | 3.651601e-53 | -8.615850e-47 |
Msa0010490 | Msa1307160 | 0.838433 | 2.884731e-57 | -8.615850e-47 |
Msa0010500 | Msa1307160 | 0.828042 | 1.120288e-54 | -8.615850e-47 |
Msa0017660 | Msa1307160 | 0.809649 | 1.704305e-50 | -8.615850e-47 |
Msa0023480 | Msa1307160 | 0.815857 | 7.456903e-52 | -8.615850e-47 |
Msa0036540 | Msa1307160 | 0.827360 | 1.633339e-54 | -8.615850e-47 |
Msa0043850 | Msa1307160 | 0.819597 | 1.068538e-52 | -8.615850e-47 |
Msa0059950 | Msa1307160 | 0.839478 | 1.546862e-57 | -8.615850e-47 |
Msa0067590 | Msa1307160 | -0.816566 | 5.175748e-52 | -8.615850e-47 |
Msa0077370 | Msa1307160 | 0.815672 | 8.199237e-52 | -8.615850e-47 |
Msa0082420 | Msa1307160 | 0.845010 | 5.301463e-59 | -8.615850e-47 |
Msa0090510 | Msa1307160 | 0.844447 | 7.518011e-59 | -8.615850e-47 |
Msa0098290 | Msa1307160 | 0.820279 | 7.458672e-53 | -8.615850e-47 |
Msa0099910 | Msa1307160 | 0.800596 | 1.337912e-48 | -8.615850e-47 |
Msa0100290 | Msa1307160 | 0.813036 | 3.136746e-51 | -8.615850e-47 |
Msa0117520 | Msa1307160 | 0.810925 | 9.045561e-51 | -8.615850e-47 |
Msa0610180 | Msa1307160 | 0.812275 | 4.601073e-51 | -8.615850e-47 |
Msa0610250 | Msa1307160 | 0.827399 | 1.598514e-54 | -8.615850e-47 |
Msa0631320 | Msa1307160 | 0.862456 | 5.005162e-64 | -8.615850e-47 |
Msa0637930 | Msa1307160 | -0.809143 | 2.188695e-50 | -8.615850e-47 |
Msa0641130 | Msa1307160 | 0.801579 | 8.422394e-49 | -8.615850e-47 |
Msa0654900 | Msa1307160 | 0.816393 | 5.658944e-52 | -8.615850e-47 |
Msa0657120 | Msa1307160 | 0.813707 | 2.233145e-51 | -8.615850e-47 |
Msa0671170 | Msa1307160 | 0.813224 | 2.852669e-51 | -8.615850e-47 |
Msa0671210 | Msa1307160 | 0.819844 | 9.379966e-53 | -8.615850e-47 |
Msa0689320 | Msa1307160 | 0.817351 | 3.449665e-52 | -8.615850e-47 |
Msa0694140 | Msa1307160 | 0.812238 | 4.688854e-51 | -8.615850e-47 |
Msa0698450 | Msa1307160 | 0.805562 | 1.257470e-49 | -8.615850e-47 |
Msa0698460 | Msa1307160 | 0.826363 | 2.827163e-54 | -8.615850e-47 |
Msa0703810 | Msa1307160 | 0.801425 | 9.060225e-49 | -8.615850e-47 |
Msa0703910 | Msa1307160 | 0.808388 | 3.173714e-50 | -8.615850e-47 |
Msa0705990 | Msa1307160 | 0.800555 | 1.364258e-48 | -8.615850e-47 |
Msa0719180 | Msa1307160 | 0.820535 | 6.515615e-53 | -8.615850e-47 |
Msa0731730 | Msa1307160 | 0.811682 | 6.196442e-51 | -8.615850e-47 |
Msa0741440 | Msa1307160 | 0.828694 | 7.798135e-55 | -8.615850e-47 |
Msa0769720 | Msa1307160 | 0.803042 | 4.209389e-49 | -8.615850e-47 |
Msa0769970 | Msa1307160 | 0.802234 | 6.180544e-49 | -8.615850e-47 |
Msa0772280 | Msa1307160 | 0.805246 | 1.464788e-49 | -8.615850e-47 |
Msa0796580 | Msa1307160 | -0.832680 | 8.233501e-56 | -8.615850e-47 |
Msa0800370 | Msa1307160 | 0.819753 | 9.843030e-53 | -8.615850e-47 |
Msa0802240 | Msa1307160 | 0.837324 | 5.557949e-57 | -8.615850e-47 |
Msa0822500 | Msa1307160 | 0.823107 | 1.655159e-53 | -8.615850e-47 |
Msa0833950 | Msa1307160 | -0.812483 | 4.144111e-51 | -8.615850e-47 |
Msa0120880 | Msa1307160 | 0.803864 | 2.843483e-49 | -8.615850e-47 |
Msa0136630 | Msa1307160 | 0.815387 | 9.490858e-52 | -8.615850e-47 |
Msa0137980 | Msa1307160 | 0.813848 | 2.078872e-51 | -8.615850e-47 |
Msa0138020 | Msa1307160 | 0.806251 | 9.005321e-50 | -8.615850e-47 |
Msa0138900 | Msa1307160 | 0.831141 | 1.974479e-55 | -8.615850e-47 |
Msa0144420 | Msa1307160 | 0.810876 | 9.266582e-51 | -8.615850e-47 |
Msa0144430 | Msa1307160 | 0.827511 | 1.502558e-54 | -8.615850e-47 |
Msa0144530 | Msa1307160 | 0.825042 | 5.814421e-54 | -8.615850e-47 |
Msa0148080 | Msa1307160 | 0.816322 | 5.870399e-52 | -8.615850e-47 |
Msa0153770 | Msa1307160 | 0.802810 | 4.700707e-49 | -8.615850e-47 |
Msa0160960 | Msa1307160 | 0.816042 | 6.781824e-52 | -8.615850e-47 |
Msa0167980 | Msa1307160 | 0.802714 | 4.921887e-49 | -8.615850e-47 |
Msa0170430 | Msa1307160 | 0.818988 | 1.470169e-52 | -8.615850e-47 |
Msa0183910 | Msa1307160 | 0.844626 | 6.729379e-59 | -8.615850e-47 |
Msa0196670 | Msa1307160 | 0.809296 | 2.030112e-50 | -8.615850e-47 |
Msa0216850 | Msa1307160 | -0.827087 | 1.899021e-54 | -8.615850e-47 |
Msa0220400 | Msa1307160 | -0.803089 | 4.117092e-49 | -8.615850e-47 |
Msa0232790 | Msa1307160 | 0.809555 | 1.785831e-50 | -8.615850e-47 |
Msa0233370 | Msa1307160 | 0.815192 | 1.048343e-51 | -8.615850e-47 |
Msa0234410 | Msa1307160 | -0.851847 | 6.795284e-61 | -8.615850e-47 |
Msa1229480 | Msa1307160 | 0.850026 | 2.215824e-60 | -8.615850e-47 |
Msa1236470 | Msa1307160 | 0.810183 | 1.308632e-50 | -8.615850e-47 |
Msa1239620 | Msa1307160 | 0.803769 | 2.975711e-49 | -8.615850e-47 |
Msa1240970 | Msa1307160 | 0.804860 | 1.763891e-49 | -8.615850e-47 |
Msa1270050 | Msa1307160 | 0.806656 | 7.397853e-50 | -8.615850e-47 |
Msa1272010 | Msa1307160 | 0.835949 | 1.245912e-56 | -8.615850e-47 |
Msa1277410 | Msa1307160 | 0.971548 | 2.454500e-133 | -8.615850e-47 |
Msa1277780 | Msa1307160 | 0.838480 | 2.805269e-57 | -8.615850e-47 |
Msa1280170 | Msa1307160 | 0.819758 | 9.818262e-53 | -8.615850e-47 |
Msa1307140 | Msa1307160 | 0.863498 | 2.385799e-64 | -8.615850e-47 |
Msa1307160 | Msa1307180 | 0.901736 | 1.981501e-78 | -8.615850e-47 |
Msa1307160 | Msa1309760 | 0.857052 | 2.121744e-62 | -8.615850e-47 |
Msa1307160 | Msa1315890 | 0.800870 | 1.176682e-48 | -8.615850e-47 |
Msa1307160 | Msa1316360 | 0.908613 | 1.412410e-81 | -8.615850e-47 |
Msa1307160 | Msa1336560 | 0.824763 | 6.767525e-54 | -8.615850e-47 |
Msa1307160 | Msa1341060 | 0.833522 | 5.080401e-56 | -8.615850e-47 |
Msa1307160 | Msa1346840 | 0.826230 | 3.040150e-54 | -8.615850e-47 |
Msa1307160 | Msa1352890 | 0.828211 | 1.019611e-54 | -8.615850e-47 |
Msa1307160 | Msa1355890 | 0.816172 | 6.342037e-52 | -8.615850e-47 |
Msa1307160 | Msa1359400 | 0.824169 | 9.335645e-54 | -8.615850e-47 |
Msa1307160 | Msa1364210 | 0.801050 | 1.081088e-48 | -8.615850e-47 |
Msa1307160 | Msa1364350 | -0.816629 | 5.010296e-52 | -8.615850e-47 |
Msa1307160 | Msa1368360 | 0.805782 | 1.130620e-49 | -8.615850e-47 |
Msa1307160 | Msa1370590 | 0.805260 | 1.454416e-49 | -8.615850e-47 |
Msa1307160 | Msa1370810 | 0.801216 | 9.995585e-49 | -8.615850e-47 |
Msa1307160 | Msa1375610 | -0.802080 | 6.647164e-49 | -8.615850e-47 |
Msa1307160 | Msa1382020 | 0.801437 | 9.009935e-49 | -8.615850e-47 |
Msa1307160 | Msa1382380 | -0.841250 | 5.323525e-58 | -8.615850e-47 |
Msa1307160 | Msa1383630 | 0.801941 | 7.100112e-49 | -8.615850e-47 |
Msa1307160 | Msa1384100 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
Msa1307160 | Msa1385730 | 0.805566 | 1.254685e-49 | -8.615850e-47 |
Msa1307160 | Msa1395730 | 0.818910 | 1.531504e-52 | -8.615850e-47 |
Msa1307160 | Msa1407190 | 0.807201 | 5.673536e-50 | -8.615850e-47 |
Msa1307160 | Msa1407760 | 0.823141 | 1.624715e-53 | -8.615850e-47 |
Msa1307160 | Msa1412130 | 0.808213 | 3.458067e-50 | -8.615850e-47 |
Msa1307160 | Msa1423540 | 0.814005 | 1.920430e-51 | -8.615850e-47 |
Msa1307160 | Msa1437730 | 0.808198 | 3.484833e-50 | -8.615850e-47 |
Msa0364790 | Msa1307160 | 0.821867 | 3.213161e-53 | -8.615850e-47 |
Msa0365950 | Msa1307160 | 0.804597 | 2.001818e-49 | -8.615850e-47 |
Msa0367760 | Msa1307160 | 0.812228 | 4.712653e-51 | -8.615850e-47 |
Msa0370580 | Msa1307160 | -0.802094 | 6.603702e-49 | -8.615850e-47 |
Msa0374340 | Msa1307160 | -0.802084 | 6.635283e-49 | -8.615850e-47 |
Msa0380100 | Msa1307160 | 0.813516 | 2.460486e-51 | -8.615850e-47 |
Msa0380400 | Msa1307160 | -0.801628 | 8.231723e-49 | -8.615850e-47 |
Msa0385500 | Msa1307160 | 0.827655 | 1.387925e-54 | -8.615850e-47 |
Msa0389210 | Msa1307160 | 0.814930 | 1.198543e-51 | -8.615850e-47 |
Msa0404050 | Msa1307160 | 0.801486 | 8.803612e-49 | -8.615850e-47 |
Msa0412260 | Msa1307160 | 0.824192 | 9.220892e-54 | -8.615850e-47 |
Msa0427580 | Msa1307160 | 0.842040 | 3.295705e-58 | -8.615850e-47 |
Msa0456770 | Msa1307160 | 0.843926 | 1.037525e-58 | -8.615850e-47 |
Msa0460740 | Msa1307160 | 0.820084 | 8.267579e-53 | -8.615850e-47 |
Msa0481030 | Msa1307160 | 0.826725 | 2.316972e-54 | -8.615850e-47 |
Msa0982090 | Msa1307160 | -0.836277 | 1.028353e-56 | -8.615850e-47 |
Msa0985180 | Msa1307160 | 0.808585 | 2.880896e-50 | -8.615850e-47 |
Msa0994370 | Msa1307160 | 0.811990 | 5.308875e-51 | -8.615850e-47 |
Msa1023310 | Msa1307160 | 0.856977 | 2.232352e-62 | -8.615850e-47 |
Msa1031460 | Msa1307160 | 0.805206 | 1.492823e-49 | -8.615850e-47 |
Msa1044510 | Msa1307160 | 0.803509 | 3.370435e-49 | -8.615850e-47 |
Msa1054510 | Msa1307160 | 0.804723 | 1.883860e-49 | -8.615850e-47 |
Msa1059470 | Msa1307160 | 0.816316 | 5.889470e-52 | -8.615850e-47 |
Msa1062040 | Msa1307160 | 0.879280 | 1.416975e-69 | -8.615850e-47 |
Msa1070540 | Msa1307160 | 0.826984 | 2.009152e-54 | -8.615850e-47 |
Msa1082360 | Msa1307160 | 0.816595 | 5.101189e-52 | -8.615850e-47 |
Msa1085610 | Msa1307160 | -0.801442 | 8.988780e-49 | -8.615850e-47 |
Msa1089320 | Msa1307160 | 0.800307 | 1.532648e-48 | -8.615850e-47 |
Msa1089460 | Msa1307160 | 0.812998 | 3.196457e-51 | -8.615850e-47 |
Msa1101240 | Msa1307160 | 0.824266 | 8.861180e-54 | -8.615850e-47 |
Msa0257490 | Msa1307160 | 0.809231 | 2.095519e-50 | -8.615850e-47 |
Msa0278580 | Msa1307160 | 0.805097 | 1.573703e-49 | -8.615850e-47 |
Msa0296050 | Msa1307160 | -0.800686 | 1.282893e-48 | -8.615850e-47 |
Msa0316470 | Msa1307160 | 0.800486 | 1.409350e-48 | -8.615850e-47 |
Msa0317960 | Msa1307160 | 0.804195 | 2.427456e-49 | -8.615850e-47 |
Msa0319020 | Msa1307160 | 0.813538 | 2.433150e-51 | -8.615850e-47 |
Msa0321690 | Msa1307160 | 0.800405 | 1.463658e-48 | -8.615850e-47 |
Msa0322240 | Msa1307160 | 0.806634 | 7.477526e-50 | -8.615850e-47 |
Msa0331020 | Msa1307160 | 0.815225 | 1.030927e-51 | -8.615850e-47 |
Msa0333850 | Msa1307160 | -0.817036 | 4.060535e-52 | -8.615850e-47 |
Msa0333970 | Msa1307160 | -0.801905 | 7.221324e-49 | -8.615850e-47 |
Msa1107200 | Msa1307160 | 0.864402 | 1.248066e-64 | -8.615850e-47 |
Msa1109810 | Msa1307160 | 0.811904 | 5.542855e-51 | -8.615850e-47 |
Msa1123780 | Msa1307160 | 0.804020 | 2.639823e-49 | -8.615850e-47 |
Msa1128280 | Msa1307160 | 0.800948 | 1.134251e-48 | -8.615850e-47 |
Msa1137780 | Msa1307160 | 0.806893 | 6.594908e-50 | -8.615850e-47 |
Msa1150780 | Msa1307160 | 0.842546 | 2.421182e-58 | -8.615850e-47 |
Msa1158390 | Msa1307160 | 0.836382 | 9.668102e-57 | -8.615850e-47 |
Msa1165270 | Msa1307160 | 0.800782 | 1.226474e-48 | -8.615850e-47 |
Msa1169920 | Msa1307160 | 0.806803 | 6.888278e-50 | -8.615850e-47 |
Msa1175200 | Msa1307160 | 0.839369 | 1.651412e-57 | -8.615850e-47 |
Msa1176170 | Msa1307160 | 0.955786 | 1.357621e-113 | -8.615850e-47 |
Msa1176380 | Msa1307160 | 0.803666 | 3.126516e-49 | -8.615850e-47 |
Msa1183140 | Msa1307160 | 0.873779 | 1.128250e-67 | -8.615850e-47 |
Msa1191440 | Msa1307160 | 0.803649 | 3.152067e-49 | -8.615850e-47 |
Msa1206450 | Msa1307160 | -0.806113 | 9.630977e-50 | -8.615850e-47 |
Msa1207310 | Msa1307160 | 0.809772 | 1.604298e-50 | -8.615850e-47 |
Msa1218160 | Msa1307160 | 0.817241 | 3.652550e-52 | -8.615850e-47 |
Msa0482940 | Msa1307160 | 0.801353 | 9.370416e-49 | -8.615850e-47 |
Msa0485710 | Msa1307160 | 0.826663 | 2.396903e-54 | -8.615850e-47 |
Msa0500470 | Msa1307160 | 0.828718 | 7.694930e-55 | -8.615850e-47 |
Msa0518170 | Msa1307160 | 0.845783 | 3.273573e-59 | -8.615850e-47 |
Msa0519160 | Msa1307160 | 0.816640 | 4.982148e-52 | -8.615850e-47 |
Msa0520270 | Msa1307160 | 0.800654 | 1.302006e-48 | -8.615850e-47 |
Msa0527540 | Msa1307160 | 0.808445 | 3.085809e-50 | -8.615850e-47 |
Msa0529000 | Msa1307160 | 0.814190 | 1.747779e-51 | -8.615850e-47 |
Msa0534870 | Msa1307160 | 0.856097 | 4.049323e-62 | -8.615850e-47 |
Msa0536350 | Msa1307160 | 0.830012 | 3.731633e-55 | -8.615850e-47 |
Msa0545050 | Msa1307160 | 0.815996 | 6.944128e-52 | -8.615850e-47 |
Msa0574930 | Msa1307160 | 0.852970 | 3.254599e-61 | -8.615850e-47 |
Msa0576120 | Msa1307160 | -0.812124 | 4.963578e-51 | -8.615850e-47 |
Msa0592330 | Msa1307160 | 0.807640 | 4.580529e-50 | -8.615850e-47 |
Msa0600590 | Msa1307160 | 0.820331 | 7.258276e-53 | -8.615850e-47 |
Msa0865030 | Msa1307160 | 0.807726 | 4.390266e-50 | -8.615850e-47 |
Msa0881530 | Msa1307160 | -0.841956 | 3.469415e-58 | -8.615850e-47 |
Msa0894710 | Msa1307160 | 0.800967 | 1.124011e-48 | -8.615850e-47 |
Msa0930740 | Msa1307160 | 0.865363 | 6.236102e-65 | -8.615850e-47 |
Msa0974950 | Msa1307160 | 0.805481 | 1.307672e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1307160 | MtrunA17_Chr8g0346311 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 3.53e-90 | 258 |
Msa1307160 | MtrunA17_Chr3g0127451 | 51.471 | 136 | 54 | 2 | 1 | 127 | 1 | 133 | 6.64e-46 | 145 |
Msa1307160 | MtrunA17_Chr7g0276081 | 55.714 | 140 | 52 | 2 | 3 | 133 | 4 | 142 | 1.78e-45 | 144 |
Msa1307160 | MtrunA17_Chr4g0010061 | 44.928 | 138 | 64 | 3 | 1 | 129 | 14 | 148 | 4.79e-41 | 133 |
Msa1307160 | MtrunA17_Chr5g0419651 | 54.444 | 90 | 31 | 2 | 1 | 81 | 1 | 89 | 5.26e-28 | 99.8 |
Msa1307160 | MtrunA17_Chr3g0134591 | 30.000 | 140 | 78 | 3 | 3 | 127 | 2 | 136 | 6.81e-20 | 79.7 |
Msa1307160 | MtrunA17_Chr3g0115151 | 31.852 | 135 | 62 | 3 | 1 | 106 | 457 | 590 | 4.55e-15 | 70.5 |
Msa1307160 | MtrunA17_Chr3g0115131 | 46.053 | 76 | 31 | 2 | 5 | 71 | 516 | 590 | 2.13e-14 | 68.6 |
Msa1307160 | MtrunA17_Chr5g0424491 | 41.463 | 82 | 38 | 2 | 1 | 73 | 513 | 593 | 2.61e-13 | 65.5 |
Msa1307160 | MtrunA17_Chr6g0486891 | 37.681 | 69 | 35 | 1 | 12 | 72 | 50 | 118 | 4.02e-13 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1307160 | AT5G53560.1 | 48.529 | 136 | 58 | 3 | 1 | 127 | 1 | 133 | 5.94e-45 | 143 |
Msa1307160 | AT5G48810.1 | 48.889 | 135 | 59 | 2 | 1 | 126 | 1 | 134 | 1.37e-43 | 140 |
Msa1307160 | AT2G32720.1 | 49.630 | 135 | 56 | 3 | 1 | 126 | 1 | 132 | 1.53e-42 | 137 |
Msa1307160 | AT2G32720.2 | 50.000 | 114 | 45 | 3 | 22 | 126 | 22 | 132 | 1.63e-30 | 107 |
Msa1307160 | AT2G46650.1 | 46.154 | 130 | 58 | 3 | 8 | 127 | 5 | 132 | 1.09e-28 | 102 |
Msa1307160 | AT1G26340.1 | 46.512 | 86 | 37 | 1 | 1 | 77 | 1 | 86 | 2.88e-26 | 96.3 |
Msa1307160 | AT1G37130.1 | 41.250 | 80 | 37 | 2 | 1 | 71 | 538 | 616 | 1.25e-14 | 69.7 |
Msa1307160 | AT1G60660.1 | 41.176 | 68 | 32 | 1 | 12 | 71 | 53 | 120 | 1.54e-14 | 65.5 |
Msa1307160 | AT1G77760.1 | 40.000 | 80 | 38 | 2 | 1 | 71 | 541 | 619 | 2.73e-13 | 65.9 |
Find 33 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTTGCTCTTCAGTACTA+TGG | 0.296249 | 8_4:+2487104 | Msa1307160:CDS |
CCTGGTGCCGTTGCTGATAT+TGG | 0.324237 | 8_4:+2487076 | Msa1307160:CDS |
ATTCATTACTTAAGATTCAT+TGG | 0.334499 | 8_4:-2487141 | None:intergenic |
AGAAGATTGATTGCTGCTTA+TGG | 0.334533 | 8_4:-2487027 | None:intergenic |
ATCAGAGACTTTAACCTTTG+AGG | 0.335279 | 8_4:+2482791 | Msa1307160:CDS |
GACTTTAACCTTTGAGGATG+TGG | 0.376866 | 8_4:+2482797 | Msa1307160:CDS |
ATAAGCAGCAATCAATCTTC+TGG | 0.400727 | 8_4:+2487029 | Msa1307160:CDS |
TGATGGAAAAGTACTATGTC+GGG | 0.401001 | 8_4:+2486937 | Msa1307160:CDS |
CTGGTGCCGTTGCTGATATT+GGG | 0.414415 | 8_4:+2487077 | Msa1307160:CDS |
CTTATGGTAGATGCTTGAAT+TGG | 0.417094 | 8_4:-2487011 | None:intergenic |
GATGCTTGAATTGGTGCTGT+TGG | 0.425349 | 8_4:-2487002 | None:intergenic |
CTGGATCATAGTCAACAAAA+AGG | 0.426357 | 8_4:+2482845 | Msa1307160:CDS |
GGATTGTTCTTAGCTGCTGC+TGG | 0.435494 | 8_4:-2486981 | None:intergenic |
AATCTTGCAGTTGAAGAAGA+TGG | 0.435798 | 8_4:+2482761 | Msa1307160:intron |
TAAGTAATGAATTTGAACTT+TGG | 0.441457 | 8_4:+2487152 | Msa1307160:exon |
GTGGCCAACATCTTCAAAAT+CGG | 0.455103 | 8_4:-2486895 | None:intergenic |
CGCAATCTAGCATGAATAAG+AGG | 0.472461 | 8_4:-2487319 | None:intergenic |
ACAATAACAAGAACGATTGC+TGG | 0.477730 | 8_4:+2482826 | Msa1307160:CDS |
GTTGAAGTTCTTGCAGTACC+TGG | 0.488377 | 8_4:+2487058 | Msa1307160:CDS |
TAATAATCTATATCAACATA+AGG | 0.507284 | 8_4:+2487216 | Msa1307160:three_prime_UTR |
CCAATATCAGCAACGGCACC+AGG | 0.516481 | 8_4:-2487076 | None:intergenic |
ATCTTGCAGTTGAAGAAGAT+GGG | 0.518015 | 8_4:+2482762 | Msa1307160:intron |
TGACTCGGCAACAGAGATGA+TGG | 0.533371 | 8_4:+2486920 | Msa1307160:CDS |
ATGATGGAAAAGTACTATGT+CGG | 0.538408 | 8_4:+2486936 | Msa1307160:CDS |
AGCTGCTGCTGGAAGAGTGT+TGG | 0.552849 | 8_4:-2486970 | None:intergenic |
GAGATATTATATCAGAGTCA+TGG | 0.553803 | 8_4:-2487343 | None:intergenic |
GTGCTTAGCCACATCCTCAA+AGG | 0.580670 | 8_4:-2482805 | None:intergenic |
AGATGTTGGCCACAGTGACT+CGG | 0.590642 | 8_4:+2486905 | Msa1307160:CDS |
GCCAACATCTTCAAAATCGG+TGG | 0.624406 | 8_4:-2486892 | None:intergenic |
GCAGATCCCAATATCAGCAA+CGG | 0.642745 | 8_4:-2487083 | None:intergenic |
GATGGAAAAGTACTATGTCG+GGG | 0.689368 | 8_4:+2486938 | Msa1307160:CDS |
TCTCTGTTGCCGAGTCACTG+TGG | 0.717695 | 8_4:-2486914 | None:intergenic |
GGAAAAGTACTATGTCGGGG+AGG | 0.724893 | 8_4:+2486941 | Msa1307160:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTAAATATATTTTATTTT+GGG | - | chr8_4:2485290-2485309 | None:intergenic | 0.0% |
!!! | ATATTAAATATATTTTATTT+TGG | - | chr8_4:2485291-2485310 | None:intergenic | 0.0% |
!!! | AAAATCTGATTATTTTTTTT+TGG | + | chr8_4:2482657-2482676 | Msa1307160:intron | 10.0% |
!!! | AAATCTGATTATTTTTTTTT+GGG | + | chr8_4:2482658-2482677 | Msa1307160:intron | 10.0% |
!! | TATTGTAGTTAAAAAAAAAT+TGG | + | chr8_4:2484037-2484056 | Msa1307160:intron | 10.0% |
!! | ATTGTAGTTAAAAAAAAATT+GGG | + | chr8_4:2484038-2484057 | Msa1307160:intron | 10.0% |
!!! | ACTGTTTTTTTTTTTTTTTT+GGG | - | chr8_4:2485220-2485239 | None:intergenic | 10.0% |
!!! | TACTGTTTTTTTTTTTTTTT+TGG | - | chr8_4:2485221-2485240 | None:intergenic | 10.0% |
!! | AAGTAATGAAATTTATATTT+AGG | + | chr8_4:2486110-2486129 | Msa1307160:intron | 10.0% |
!! | AAAAACTAAATTGGAATAAA+AGG | - | chr8_4:2483405-2483424 | None:intergenic | 15.0% |
!!! | ATAAATTTATACTCTTTTTG+AGG | - | chr8_4:2483718-2483737 | None:intergenic | 15.0% |
!! | TTGTAGTTAAAAAAAAATTG+GGG | + | chr8_4:2484039-2484058 | Msa1307160:intron | 15.0% |
!!! | AATATGTTTTGATAATTAGA+CGG | - | chr8_4:2484245-2484264 | None:intergenic | 15.0% |
!!! | TTTTTTAAACATAAGTATTG+TGG | + | chr8_4:2484604-2484623 | Msa1307160:intron | 15.0% |
!! | TTTAAATTAGTAAACTCTTA+TGG | + | chr8_4:2484723-2484742 | Msa1307160:intron | 15.0% |
!! | TTAAATTAGTAAACTCTTAT+GGG | + | chr8_4:2484724-2484743 | Msa1307160:intron | 15.0% |
!!! | TTTCTGTTTTTTTTCTTTTT+CGG | + | chr8_4:2485383-2485402 | Msa1307160:intron | 15.0% |
!!! | AGAGATTTTAAAAAGTAAAT+AGG | - | chr8_4:2485550-2485569 | None:intergenic | 15.0% |
!! | TATAAATTTATGTTGTTAGA+TGG | + | chr8_4:2486051-2486070 | Msa1307160:intron | 15.0% |
!! | TAATAATCTATATCAACATA+AGG | + | chr8_4:2487216-2487235 | Msa1307160:three_prime_UTR | 15.0% |
!!! | ATATCTCAAATATTTTGAAA+TGG | + | chr8_4:2487359-2487378 | Msa1307160:three_prime_UTR | 15.0% |
!!! | ATTTTAAGAACTGAAAATGA+AGG | - | chr8_4:2482642-2482661 | None:intergenic | 20.0% |
!!! | TTATGTTATTGTCTAGTTTT+TGG | + | chr8_4:2483195-2483214 | Msa1307160:intron | 20.0% |
!! | TAAATTGGAATAAAAGGTTA+TGG | - | chr8_4:2483399-2483418 | None:intergenic | 20.0% |
!!! | TTTTTCAATTTTTTTTGGCT+TGG | + | chr8_4:2483429-2483448 | Msa1307160:intron | 20.0% |
!!! | TTTTAAACTTTCTCGATTTT+GGG | - | chr8_4:2483565-2483584 | None:intergenic | 20.0% |
!!! | TTTTTAAACTTTCTCGATTT+TGG | - | chr8_4:2483566-2483585 | None:intergenic | 20.0% |
!! | TAAACATTCAATCTCTTATT+GGG | - | chr8_4:2483676-2483695 | None:intergenic | 20.0% |
!! | TTAAACATTCAATCTCTTAT+TGG | - | chr8_4:2483677-2483696 | None:intergenic | 20.0% |
!! | TGTAGTTAAAAAAAAATTGG+GGG | + | chr8_4:2484040-2484059 | Msa1307160:intron | 20.0% |
!! | ACAATATTAAAGCAAAATGT+TGG | - | chr8_4:2484067-2484086 | None:intergenic | 20.0% |
!!! | TTTTGCTTTAATATTGTATG+TGG | + | chr8_4:2484070-2484089 | Msa1307160:intron | 20.0% |
!!! | GCATCTAATTTTATACTAAT+TGG | + | chr8_4:2484092-2484111 | Msa1307160:intron | 20.0% |
!!! | TTTAACTTGTTTGCATTAAA+AGG | + | chr8_4:2484115-2484134 | Msa1307160:intron | 20.0% |
!!! | TTTGAATTTGCTGTAAAAAT+TGG | + | chr8_4:2484164-2484183 | Msa1307160:intron | 20.0% |
!! | AAAAATTGGATAAAGTTACA+TGG | + | chr8_4:2484178-2484197 | Msa1307160:intron | 20.0% |
!! | AATGATGAGAGAAAAAAAAA+AGG | - | chr8_4:2484290-2484309 | None:intergenic | 20.0% |
!! | AAAAAAAAAACAGAAAGACA+TGG | + | chr8_4:2485138-2485157 | Msa1307160:intron | 20.0% |
!! | AAAAAAAAACAGTAGAATTG+TGG | + | chr8_4:2485227-2485246 | Msa1307160:intron | 20.0% |
!! | AAAAAAAACAGTAGAATTGT+GGG | + | chr8_4:2485228-2485247 | Msa1307160:intron | 20.0% |
!!! | TTCTGTTTTTTTTCTTTTTC+GGG | + | chr8_4:2485384-2485403 | Msa1307160:intron | 20.0% |
!!! | TACTTTTTAAAATCTCTTAG+AGG | + | chr8_4:2485553-2485572 | Msa1307160:intron | 20.0% |
!! | TATTTATTAGTAGCAATGTA+GGG | - | chr8_4:2485726-2485745 | None:intergenic | 20.0% |
!! | TTATTTATTAGTAGCAATGT+AGG | - | chr8_4:2485727-2485746 | None:intergenic | 20.0% |
!!! | ATTTCTCTCTAAGATTAAAA+TGG | - | chr8_4:2485976-2485995 | None:intergenic | 20.0% |
!! | GTATTCCTATGTTTATTATA+GGG | - | chr8_4:2486201-2486220 | None:intergenic | 20.0% |
!! | TGTATTCCTATGTTTATTAT+AGG | - | chr8_4:2486202-2486221 | None:intergenic | 20.0% |
!!! | TTTGTACTTTTGTTATTAGT+AGG | + | chr8_4:2486283-2486302 | Msa1307160:intron | 20.0% |
!!! | ATTTTTCACATGACTAAAAT+GGG | - | chr8_4:2486488-2486507 | None:intergenic | 20.0% |
!!! | GTTGTTATTTATTATTCTCA+GGG | + | chr8_4:2486663-2486682 | Msa1307160:intron | 20.0% |
!! | ATTCATTACTTAAGATTCAT+TGG | - | chr8_4:2487144-2487163 | None:intergenic | 20.0% |
!! | TAAGTAATGAATTTGAACTT+TGG | + | chr8_4:2487152-2487171 | Msa1307160:exon | 20.0% |
! | AGGAATATGAATATGATTCA+TGG | + | chr8_4:2483055-2483074 | Msa1307160:intron | 25.0% |
! | TGAATATGATTCATGGTATT+AGG | + | chr8_4:2483062-2483081 | Msa1307160:intron | 25.0% |
! | GAATATGATTCATGGTATTA+GGG | + | chr8_4:2483063-2483082 | Msa1307160:intron | 25.0% |
! | TAGAATACACATTGAATTCA+GGG | - | chr8_4:2483241-2483260 | None:intergenic | 25.0% |
! | ATAGAATACACATTGAATTC+AGG | - | chr8_4:2483242-2483261 | None:intergenic | 25.0% |
!! | TGATCTGTCAATAATTTGTA+TGG | + | chr8_4:2483298-2483317 | Msa1307160:intron | 25.0% |
!! | ATGTAGTCATTCTAATTTGT+AGG | - | chr8_4:2483514-2483533 | None:intergenic | 25.0% |
! | TTAATACTCACTCTCTAATT+GGG | + | chr8_4:2483611-2483630 | Msa1307160:intron | 25.0% |
!! | TTAAATCAATGTGAAGTGTT+GGG | + | chr8_4:2483634-2483653 | Msa1307160:intron | 25.0% |
!!! | GAAATTAGATGGATTTTTGA+AGG | - | chr8_4:2483760-2483779 | None:intergenic | 25.0% |
! | ATGATGCAAAAAAACTGTAA+TGG | - | chr8_4:2483794-2483813 | None:intergenic | 25.0% |
! | TTAGACTCTATTTATATCAG+TGG | - | chr8_4:2484144-2484163 | None:intergenic | 25.0% |
!!! | TAAAGTTACATGGTTTTAGA+AGG | + | chr8_4:2484188-2484207 | Msa1307160:intron | 25.0% |
! | CATATTCATACTGTGAAAAT+TGG | + | chr8_4:2484259-2484278 | Msa1307160:intron | 25.0% |
! | CACTAAAAGTTAAAAATCCA+TGG | - | chr8_4:2484508-2484527 | None:intergenic | 25.0% |
! | ATCAATGAAACTATAATGCT+AGG | + | chr8_4:2484560-2484579 | Msa1307160:intron | 25.0% |
! | AAATATCCAACATTCTAACT+TGG | - | chr8_4:2484642-2484661 | None:intergenic | 25.0% |
! | AATTTGCAAAGATTTAACCA+GGG | - | chr8_4:2484931-2484950 | None:intergenic | 25.0% |
! | AGAAAAAAAACAGAAAGACA+CGG | - | chr8_4:2485379-2485398 | None:intergenic | 25.0% |
!!! | TTTTTAAAATCTCTTAGAGG+AGG | + | chr8_4:2485556-2485575 | Msa1307160:intron | 25.0% |
! | AGTATTTCATATTACTCAGT+GGG | + | chr8_4:2485672-2485691 | Msa1307160:intron | 25.0% |
! | TTCTTAAACGAAATAATCAG+TGG | - | chr8_4:2485769-2485788 | None:intergenic | 25.0% |
! | GTATTTATCATGTTACTGAT+GGG | - | chr8_4:2485896-2485915 | None:intergenic | 25.0% |
! | TACTTTAAACAAACGCATTT+CGG | - | chr8_4:2486095-2486114 | None:intergenic | 25.0% |
! | ATTACAATGGAATACAAGTT+AGG | - | chr8_4:2486334-2486353 | None:intergenic | 25.0% |
! | AACTTGTATTCCATTGTAAT+AGG | + | chr8_4:2486334-2486353 | Msa1307160:intron | 25.0% |
! | ACATCATATACCTATTACAA+TGG | - | chr8_4:2486347-2486366 | None:intergenic | 25.0% |
!! | CATTTTTCACATGACTAAAA+TGG | - | chr8_4:2486489-2486508 | None:intergenic | 25.0% |
!!! | CATTTTAGTCATGTGAAAAA+TGG | + | chr8_4:2486487-2486506 | Msa1307160:intron | 25.0% |
!!! | CTGTCTCAAATTATTTTTCT+CGG | + | chr8_4:2486631-2486650 | Msa1307160:intron | 25.0% |
!!! | CGTTGTTATTTATTATTCTC+AGG | + | chr8_4:2486662-2486681 | Msa1307160:intron | 25.0% |
!!! | TGTGTTTTATTATCATGTAG+AGG | + | chr8_4:2487270-2487289 | Msa1307160:three_prime_UTR | 25.0% |
!!! | GTGTTTTATTATCATGTAGA+GGG | + | chr8_4:2487271-2487290 | Msa1307160:three_prime_UTR | 25.0% |
!! | TTTGTGTTCTTGATTTTCTA+TGG | + | chr8_4:2487296-2487315 | Msa1307160:three_prime_UTR | 25.0% |
ACTGAGAATGATTGTGATAT+AGG | + | chr8_4:2483035-2483054 | Msa1307160:intron | 30.0% | |
CATTAGATCATGTCATGATA+TGG | - | chr8_4:2483355-2483374 | None:intergenic | 30.0% | |
! | TCTAATTTGTAGGAAGATCA+AGG | - | chr8_4:2483504-2483523 | None:intergenic | 30.0% |
GTTAATACTCACTCTCTAAT+TGG | + | chr8_4:2483610-2483629 | Msa1307160:intron | 30.0% | |
GTTAAATCAATGTGAAGTGT+TGG | + | chr8_4:2483633-2483652 | Msa1307160:intron | 30.0% | |
!! | ATGGATTTTTGAAGGAAATG+AGG | - | chr8_4:2483752-2483771 | None:intergenic | 30.0% |
TTAACATCACGGAAATTAGA+TGG | - | chr8_4:2483771-2483790 | None:intergenic | 30.0% | |
AACTGTAATGGTTAACATCA+CGG | - | chr8_4:2483782-2483801 | None:intergenic | 30.0% | |
! | TGCATACATATTAAGAGTGT+CGG | - | chr8_4:2483909-2483928 | None:intergenic | 30.0% |
!! | TTTCTCTCATCATTTTGACA+TGG | + | chr8_4:2484296-2484315 | Msa1307160:intron | 30.0% |
! | TATATTTTGCACAGTTGCAA+AGG | - | chr8_4:2484325-2484344 | None:intergenic | 30.0% |
AATTGCTAAAGAGTGAAGAA+CGG | - | chr8_4:2484459-2484478 | None:intergenic | 30.0% | |
TCATTACCAAGTTAGAATGT+TGG | + | chr8_4:2484633-2484652 | Msa1307160:intron | 30.0% | |
! | AGTGTTGAAAACATCTACAA+TGG | - | chr8_4:2484694-2484713 | None:intergenic | 30.0% |
ATGATTAATCTAGTAACAGC+TGG | - | chr8_4:2484841-2484860 | None:intergenic | 30.0% | |
GAATTTGCAAAGATTTAACC+AGG | - | chr8_4:2484932-2484951 | None:intergenic | 30.0% | |
GAGTATTTCATATTACTCAG+TGG | + | chr8_4:2485671-2485690 | Msa1307160:intron | 30.0% | |
GTATTTCATATTACTCAGTG+GGG | + | chr8_4:2485673-2485692 | Msa1307160:intron | 30.0% | |
TATTTCATATTACTCAGTGG+GGG | + | chr8_4:2485674-2485693 | Msa1307160:intron | 30.0% | |
CGTATTTATCATGTTACTGA+TGG | - | chr8_4:2485897-2485916 | None:intergenic | 30.0% | |
AATACGATCTTTCATATGAG+TGG | + | chr8_4:2485911-2485930 | Msa1307160:intron | 30.0% | |
GAGAAATATGAACTCATCAT+TGG | + | chr8_4:2485989-2486008 | Msa1307160:intron | 30.0% | |
TTAGATGGCATAAACTACAT+TGG | + | chr8_4:2486066-2486085 | Msa1307160:intron | 30.0% | |
TAGCACCCTATAATAAACAT+AGG | + | chr8_4:2486193-2486212 | Msa1307160:intron | 30.0% | |
ACACATTCACATGAATGAAT+GGG | - | chr8_4:2486234-2486253 | None:intergenic | 30.0% | |
AACACATTCACATGAATGAA+TGG | - | chr8_4:2486235-2486254 | None:intergenic | 30.0% | |
! | ATATGATGTTACCCCATTTT+TGG | + | chr8_4:2486358-2486377 | Msa1307160:CDS | 30.0% |
! | TCATGTCTTTAAAGAAGGTA+GGG | + | chr8_4:2486602-2486621 | Msa1307160:intron | 30.0% |
TGAGTTGCTGAAAAAAACTA+CGG | - | chr8_4:2486702-2486721 | None:intergenic | 30.0% | |
! | TTTTCTTGCTCTCTTCTTAT+AGG | - | chr8_4:2486794-2486813 | None:intergenic | 30.0% |
ACATTCAACTAACAATCTTC+TGG | + | chr8_4:2486845-2486864 | Msa1307160:intron | 30.0% | |
!! | ATGATGGAAAAGTACTATGT+CGG | + | chr8_4:2486936-2486955 | Msa1307160:CDS | 30.0% |
GAGATATTATATCAGAGTCA+TGG | - | chr8_4:2487346-2487365 | None:intergenic | 30.0% | |
!! | TACAAGATTTTGACAGAGGT+TGG | - | chr8_4:2482589-2482608 | None:intergenic | 35.0% |
!! | TGCTTACAAGATTTTGACAG+AGG | - | chr8_4:2482593-2482612 | None:intergenic | 35.0% |
AATCTTGCAGTTGAAGAAGA+TGG | + | chr8_4:2482761-2482780 | Msa1307160:intron | 35.0% | |
ATCTTGCAGTTGAAGAAGAT+GGG | + | chr8_4:2482762-2482781 | Msa1307160:intron | 35.0% | |
ATCAGAGACTTTAACCTTTG+AGG | + | chr8_4:2482791-2482810 | Msa1307160:CDS | 35.0% | |
ACAATAACAAGAACGATTGC+TGG | + | chr8_4:2482826-2482845 | Msa1307160:CDS | 35.0% | |
CTGGATCATAGTCAACAAAA+AGG | + | chr8_4:2482845-2482864 | Msa1307160:CDS | 35.0% | |
!!! | GGTATTAGGGTTTTAAACTG+CGG | + | chr8_4:2483076-2483095 | Msa1307160:intron | 35.0% |
GACAGATCAAAATACTCTTG+TGG | - | chr8_4:2483287-2483306 | None:intergenic | 35.0% | |
CACTCTTAATATGTATGCAG+TGG | + | chr8_4:2483910-2483929 | Msa1307160:intron | 35.0% | |
TAATATGTATGCAGTGGTGT+TGG | + | chr8_4:2483916-2483935 | Msa1307160:intron | 35.0% | |
!! | ATCACATTCTCAGCTTGTTA+TGG | + | chr8_4:2484352-2484371 | Msa1307160:intron | 35.0% |
!! | TCACATTCTCAGCTTGTTAT+GGG | + | chr8_4:2484353-2484372 | Msa1307160:intron | 35.0% |
AGATTCAACTTGGTAGAGTT+AGG | - | chr8_4:2484409-2484428 | None:intergenic | 35.0% | |
CAATGAAGCTAGATTCAACT+TGG | - | chr8_4:2484419-2484438 | None:intergenic | 35.0% | |
GGACAAATTGACAAATCACA+AGG | - | chr8_4:2484487-2484506 | None:intergenic | 35.0% | |
! | GTGATTTGTCAATTTGTCCA+TGG | + | chr8_4:2484488-2484507 | Msa1307160:intron | 35.0% |
! | CTATAATGCTAGGTCTTTTC+TGG | + | chr8_4:2484570-2484589 | Msa1307160:intron | 35.0% |
!! | TTGAGTTGATAACCTTGCTT+TGG | + | chr8_4:2484781-2484800 | Msa1307160:intron | 35.0% |
AGATTAGATTCTCCAAAGCA+AGG | - | chr8_4:2484796-2484815 | None:intergenic | 35.0% | |
GAAGACTTTGCTACTCTAAA+CGG | - | chr8_4:2484903-2484922 | None:intergenic | 35.0% | |
! | GCTGATTATGAAGATTGGTT+TGG | - | chr8_4:2485003-2485022 | None:intergenic | 35.0% |
TTTCAAAACGACTGCTATGT+AGG | + | chr8_4:2485255-2485274 | Msa1307160:intron | 35.0% | |
!!! | AGTTTTGAGATGAGAAAGCA+AGG | - | chr8_4:2485481-2485500 | None:intergenic | 35.0% |
GAGTAATATGAAATACTCCG+TGG | - | chr8_4:2485669-2485688 | None:intergenic | 35.0% | |
TTCGTTTAAGAACTAGCATC+AGG | + | chr8_4:2485777-2485796 | Msa1307160:intron | 35.0% | |
! | GAACTCATCATTGGTTACTT+CGG | + | chr8_4:2485998-2486017 | Msa1307160:intron | 35.0% |
TATTTAGGAATAACTTCCCC+AGG | + | chr8_4:2486125-2486144 | Msa1307160:intron | 35.0% | |
ATTTCCATCATTGCTTTCCT+GGG | - | chr8_4:2486145-2486164 | None:intergenic | 35.0% | |
AATTTCCATCATTGCTTTCC+TGG | - | chr8_4:2486146-2486165 | None:intergenic | 35.0% | |
!! | GTCTCGGTTTATTTTTCTCA+GGG | - | chr8_4:2486553-2486572 | None:intergenic | 35.0% |
!! | TGTCTCGGTTTATTTTTCTC+AGG | - | chr8_4:2486554-2486573 | None:intergenic | 35.0% |
! | TTGCCTCATGTCTTTAAAGA+AGG | + | chr8_4:2486597-2486616 | Msa1307160:intron | 35.0% |
! | CTACCTTCTTTAAAGACATG+AGG | - | chr8_4:2486603-2486622 | None:intergenic | 35.0% |
! | CTCATGTCTTTAAAGAAGGT+AGG | + | chr8_4:2486601-2486620 | Msa1307160:intron | 35.0% |
! | CATGTCTTTAAAGAAGGTAG+GGG | + | chr8_4:2486603-2486622 | Msa1307160:intron | 35.0% |
GAGTTGCTGAAAAAAACTAC+GGG | - | chr8_4:2486701-2486720 | None:intergenic | 35.0% | |
! | AATCTTCTGGTGTTTTACAC+AGG | + | chr8_4:2486858-2486877 | Msa1307160:intron | 35.0% |
! | ATCTTCTGGTGTTTTACACA+GGG | + | chr8_4:2486859-2486878 | Msa1307160:intron | 35.0% |
!! | TGATGGAAAAGTACTATGTC+GGG | + | chr8_4:2486937-2486956 | Msa1307160:CDS | 35.0% |
CTTATGGTAGATGCTTGAAT+TGG | - | chr8_4:2487014-2487033 | None:intergenic | 35.0% | |
! | AGAAGATTGATTGCTGCTTA+TGG | - | chr8_4:2487030-2487049 | None:intergenic | 35.0% |
ATAAGCAGCAATCAATCTTC+TGG | + | chr8_4:2487029-2487048 | Msa1307160:CDS | 35.0% | |
!!! | GGCTATAGTTTTAGACTCTT+TGG | + | chr8_4:2487173-2487192 | Msa1307160:three_prime_UTR | 35.0% |
! | ACATAAGGCAGTGTTCTTTT+TGG | + | chr8_4:2487231-2487250 | Msa1307160:three_prime_UTR | 35.0% |
! | GACTTTAACCTTTGAGGATG+TGG | + | chr8_4:2482797-2482816 | Msa1307160:CDS | 40.0% |
! | CAAAATACTCTTGTGGACTG+TGG | - | chr8_4:2483280-2483299 | None:intergenic | 40.0% |
!! | AGTATTAACGAGAGTGTTGC+TGG | - | chr8_4:2483599-2483618 | None:intergenic | 40.0% |
!! | TGAAGTGTTGGGACATACAT+TGG | + | chr8_4:2483645-2483664 | Msa1307160:intron | 40.0% |
ACAGGGGGTTAATAGACATT+TGG | - | chr8_4:2483828-2483847 | None:intergenic | 40.0% | |
TATTAACCCCCTGTTATGAG+AGG | + | chr8_4:2483834-2483853 | Msa1307160:intron | 40.0% | |
TTCCTTACCTCTCATAACAG+GGG | - | chr8_4:2483844-2483863 | None:intergenic | 40.0% | |
GTTCCTTACCTCTCATAACA+GGG | - | chr8_4:2483845-2483864 | None:intergenic | 40.0% | |
AGTTCCTTACCTCTCATAAC+AGG | - | chr8_4:2483846-2483865 | None:intergenic | 40.0% | |
AGGTAAGGAACTATGATGCA+CGG | + | chr8_4:2483854-2483873 | Msa1307160:intron | 40.0% | |
!!! | GTGAGGATAATGGGAGTTTT+AGG | + | chr8_4:2484006-2484025 | Msa1307160:intron | 40.0% |
!!! | TAATGGGAGTTTTAGGCACA+AGG | + | chr8_4:2484013-2484032 | Msa1307160:intron | 40.0% |
GACTTTAGACGCTAGAATAC+TGG | - | chr8_4:2484871-2484890 | None:intergenic | 40.0% | |
AGCCATGTTCACTGAAGTAA+CGG | + | chr8_4:2484975-2484994 | Msa1307160:intron | 40.0% | |
TTCCGTTACTTCAGTGAACA+TGG | - | chr8_4:2484980-2484999 | None:intergenic | 40.0% | |
GTGCAGCTGATTATGAAGAT+TGG | - | chr8_4:2485008-2485027 | None:intergenic | 40.0% | |
GACTCTGCAAAGACACAATT+TGG | + | chr8_4:2485165-2485184 | Msa1307160:intron | 40.0% | |
AAAGACACAATTTGGCGACA+CGG | + | chr8_4:2485173-2485192 | Msa1307160:intron | 40.0% | |
AACGACTGCTATGTAGGATT+TGG | + | chr8_4:2485261-2485280 | Msa1307160:intron | 40.0% | |
TGCAATTTACTCTGAGCACT+TGG | + | chr8_4:2485583-2485602 | Msa1307160:intron | 40.0% | |
GCAATTTACTCTGAGCACTT+GGG | + | chr8_4:2485584-2485603 | Msa1307160:intron | 40.0% | |
CAATTTACTCTGAGCACTTG+GGG | + | chr8_4:2485585-2485604 | Msa1307160:intron | 40.0% | |
! | AGACAGCAAACTTTAAGGGA+GGG | - | chr8_4:2485617-2485636 | None:intergenic | 40.0% |
! | TAGACAGCAAACTTTAAGGG+AGG | - | chr8_4:2485618-2485637 | None:intergenic | 40.0% |
!! | TCCCTTAAAGTTTGCTGTCT+AGG | + | chr8_4:2485617-2485636 | Msa1307160:intron | 40.0% |
CCCTAGACAGCAAACTTTAA+GGG | - | chr8_4:2485621-2485640 | None:intergenic | 40.0% | |
!! | CCCTTAAAGTTTGCTGTCTA+GGG | + | chr8_4:2485618-2485637 | Msa1307160:intron | 40.0% |
!! | CCTTAAAGTTTGCTGTCTAG+GGG | + | chr8_4:2485619-2485638 | Msa1307160:intron | 40.0% |
!! | CTTAAAGTTTGCTGTCTAGG+GGG | + | chr8_4:2485620-2485639 | Msa1307160:intron | 40.0% |
CAAGCCACTGAAATATTCCA+CGG | + | chr8_4:2485649-2485668 | Msa1307160:intron | 40.0% | |
TACTCCGTGGAATATTTCAG+TGG | - | chr8_4:2485656-2485675 | None:intergenic | 40.0% | |
TAGTAGCAATGTAGGGACTT+GGG | - | chr8_4:2485719-2485738 | None:intergenic | 40.0% | |
TTAGTAGCAATGTAGGGACT+TGG | - | chr8_4:2485720-2485739 | None:intergenic | 40.0% | |
!! | TTGGCTGGTTTATAGACCAA+CGG | + | chr8_4:2485855-2485874 | Msa1307160:intron | 40.0% |
TTGGTTACTTCGGCAAACTT+CGG | + | chr8_4:2486008-2486027 | Msa1307160:intron | 40.0% | |
TTTCCATCATTGCTTTCCTG+GGG | - | chr8_4:2486144-2486163 | None:intergenic | 40.0% | |
GGGATGATCATCCAAAAATG+GGG | - | chr8_4:2486372-2486391 | None:intergenic | 40.0% | |
CGGGATGATCATCCAAAAAT+GGG | - | chr8_4:2486373-2486392 | None:intergenic | 40.0% | |
!! | CCATTTTTGGATGATCATCC+CGG | + | chr8_4:2486371-2486390 | Msa1307160:CDS | 40.0% |
AGACATGAGGCAAAGTTGTT+CGG | - | chr8_4:2486590-2486609 | None:intergenic | 40.0% | |
CTTCTTATAGGCTATGACAG+AGG | - | chr8_4:2486782-2486801 | None:intergenic | 40.0% | |
!!! | ACCACCGATTTTGAAGATGT+TGG | + | chr8_4:2486891-2486910 | Msa1307160:CDS | 40.0% |
GTGGCCAACATCTTCAAAAT+CGG | - | chr8_4:2486898-2486917 | None:intergenic | 40.0% | |
!! | GATGGAAAAGTACTATGTCG+GGG | + | chr8_4:2486938-2486957 | Msa1307160:CDS | 40.0% |
GCATTTGCTCTTCAGTACTA+TGG | + | chr8_4:2487104-2487123 | Msa1307160:CDS | 40.0% | |
CGCAATCTAGCATGAATAAG+AGG | - | chr8_4:2487322-2487341 | None:intergenic | 40.0% | |
TGACGTCGCAGTAATGATTG+TGG | + | chr8_4:2483329-2483348 | Msa1307160:intron | 45.0% | |
TCCTTACCTCTCATAACAGG+GGG | - | chr8_4:2483843-2483862 | None:intergenic | 45.0% | |
TGTCTCCTTGTCTGTTGTGT+CGG | + | chr8_4:2483967-2483986 | Msa1307160:intron | 45.0% | |
TTATCCTCACCTGTCAAGCA+CGG | - | chr8_4:2483996-2484015 | None:intergenic | 45.0% | |
TGCTTGACAGGTGAGGATAA+TGG | + | chr8_4:2483996-2484015 | Msa1307160:intron | 45.0% | |
GCTTGACAGGTGAGGATAAT+GGG | + | chr8_4:2483997-2484016 | Msa1307160:intron | 45.0% | |
!! | TCTCAGCTTGTTATGGGAGA+TGG | + | chr8_4:2484359-2484378 | Msa1307160:intron | 45.0% |
!! | ATGCTAGGTCTTTTCTGGTG+TGG | + | chr8_4:2484575-2484594 | Msa1307160:intron | 45.0% |
ACTCTTATGGGTAGTGTCTG+CGG | + | chr8_4:2484736-2484755 | Msa1307160:intron | 45.0% | |
AGCAAAGTCTTCGATATCCC+TGG | + | chr8_4:2484911-2484930 | Msa1307160:intron | 45.0% | |
CCCCTAGACAGCAAACTTTA+AGG | - | chr8_4:2485622-2485641 | None:intergenic | 45.0% | |
CGTGGAATATTTCAGTGGCT+TGG | - | chr8_4:2485651-2485670 | None:intergenic | 45.0% | |
TATTACTCAGTGGGGGACTT+CGG | + | chr8_4:2485681-2485700 | Msa1307160:intron | 45.0% | |
TCAGTGGTAGAACTGCTTAG+TGG | - | chr8_4:2485753-2485772 | None:intergenic | 45.0% | |
CAACTGTGCACCTTCCAAAT+GGG | + | chr8_4:2485828-2485847 | Msa1307160:intron | 45.0% | |
TTCGGACAGGTCATGATATC+TGG | + | chr8_4:2486026-2486045 | Msa1307160:intron | 45.0% | |
GGGTGCTAGAAAATTCACTC+AGG | - | chr8_4:2486181-2486200 | None:intergenic | 45.0% | |
CCGGGATGATCATCCAAAAA+TGG | - | chr8_4:2486374-2486393 | None:intergenic | 45.0% | |
! | TTTTTGGATGATCATCCCGG+AGG | + | chr8_4:2486374-2486393 | Msa1307160:CDS | 45.0% |
GAGGCTTTACTTTCTGCTAC+AGG | + | chr8_4:2486401-2486420 | Msa1307160:intron | 45.0% | |
GGGTAGGAACAAAGTTGTCT+CGG | - | chr8_4:2486569-2486588 | None:intergenic | 45.0% | |
GACATGAGGCAAAGTTGTTC+GGG | - | chr8_4:2486589-2486608 | None:intergenic | 45.0% | |
! | TCTGGTGTTTTACACAGGGA+AGG | + | chr8_4:2486863-2486882 | Msa1307160:intron | 45.0% |
GCCAACATCTTCAAAATCGG+TGG | - | chr8_4:2486895-2486914 | None:intergenic | 45.0% | |
!! | GATGCTTGAATTGGTGCTGT+TGG | - | chr8_4:2487005-2487024 | None:intergenic | 45.0% |
GTTGAAGTTCTTGCAGTACC+TGG | + | chr8_4:2487058-2487077 | Msa1307160:CDS | 45.0% | |
GCAGATCCCAATATCAGCAA+CGG | - | chr8_4:2487086-2487105 | None:intergenic | 45.0% | |
!! | AAAAAAAAAAAAAACTAAAT+TGG | - | chr8_4:2483414-2483433 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTCAATTTTTTT+TGG | + | chr8_4:2483424-2483443 | Msa1307160:intron | 5.0% |
GTGCTTAGCCACATCCTCAA+AGG | - | chr8_4:2482808-2482827 | None:intergenic | 50.0% | |
TGCGGTCTCAGTAACGATTG+TGG | + | chr8_4:2483094-2483113 | Msa1307160:intron | 50.0% | |
TCACATCACGAGCGATCTGA+TGG | + | chr8_4:2483117-2483136 | Msa1307160:intron | 50.0% | |
ACCCCCTGTTATGAGAGGTA+AGG | + | chr8_4:2483839-2483858 | Msa1307160:intron | 50.0% | |
ACGCGACACGCTTAATGCTA+AGG | - | chr8_4:2483883-2483902 | None:intergenic | 50.0% | |
GGAATCCGACACAACAGACA+AGG | - | chr8_4:2483975-2483994 | None:intergenic | 50.0% | |
AGAGTGAAGAACGGTGTGAC+TGG | - | chr8_4:2484450-2484469 | None:intergenic | 50.0% | |
GCTGCTTACAGGACAAGCTA+TGG | - | chr8_4:2484958-2484977 | None:intergenic | 50.0% | |
CAGTGAACATGGCTGCTTAC+AGG | - | chr8_4:2484969-2484988 | None:intergenic | 50.0% | |
TGAAGCACAGACACTGCTGT+TGG | + | chr8_4:2485035-2485054 | Msa1307160:intron | 50.0% | |
GCATCTGACACATGTCGTAC+CGG | - | chr8_4:2485095-2485114 | None:intergenic | 50.0% | |
GTACGACATGTGTCAGATGC+AGG | + | chr8_4:2485095-2485114 | Msa1307160:intron | 50.0% | |
GACACGTGTCTTTGCAGTGA+AGG | - | chr8_4:2485328-2485347 | None:intergenic | 50.0% | |
GACACTGCAAAGACACGGTT+TGG | - | chr8_4:2485352-2485371 | None:intergenic | 50.0% | |
GAAAGCAAGGACACTGCTGT+TGG | - | chr8_4:2485468-2485487 | None:intergenic | 50.0% | |
TTTACTCTGAGCACTTGGGG+AGG | + | chr8_4:2485588-2485607 | Msa1307160:intron | 50.0% | |
TTACTCTGAGCACTTGGGGA+GGG | + | chr8_4:2485589-2485608 | Msa1307160:intron | 50.0% | |
! | CCATTTGGAAGGTGCACAGT+TGG | - | chr8_4:2485830-2485849 | None:intergenic | 50.0% |
CCAACTGTGCACCTTCCAAA+TGG | + | chr8_4:2485827-2485846 | Msa1307160:intron | 50.0% | |
CACCTTCCAAATGGGTGGAT+TGG | + | chr8_4:2485836-2485855 | Msa1307160:intron | 50.0% | |
AGCCAATCCACCCATTTGGA+AGG | - | chr8_4:2485841-2485860 | None:intergenic | 50.0% | |
!! | TTCCAAATGGGTGGATTGGC+TGG | + | chr8_4:2485840-2485859 | Msa1307160:intron | 50.0% |
AACCAGCCAATCCACCCATT+TGG | - | chr8_4:2485845-2485864 | None:intergenic | 50.0% | |
TGTTACTGATGGGACCGAAG+AGG | - | chr8_4:2485886-2485905 | None:intergenic | 50.0% | |
TACTTCGGCAAACTTCGGAC+AGG | + | chr8_4:2486013-2486032 | Msa1307160:intron | 50.0% | |
CTTCCCCAGGAAAGCAATGA+TGG | + | chr8_4:2486138-2486157 | Msa1307160:intron | 50.0% | |
AAGTAAAGCCTCGTCACCTC+CGG | - | chr8_4:2486393-2486412 | None:intergenic | 50.0% | |
TGAGGCAAAGTTGTTCGGGT+AGG | - | chr8_4:2486585-2486604 | None:intergenic | 50.0% | |
AGATGTTGGCCACAGTGACT+CGG | + | chr8_4:2486905-2486924 | Msa1307160:CDS | 50.0% | |
! | TGACTCGGCAACAGAGATGA+TGG | + | chr8_4:2486920-2486939 | Msa1307160:CDS | 50.0% |
!! | GGAAAAGTACTATGTCGGGG+AGG | + | chr8_4:2486941-2486960 | Msa1307160:CDS | 50.0% |
GGATTGTTCTTAGCTGCTGC+TGG | - | chr8_4:2486984-2487003 | None:intergenic | 50.0% | |
!! | CTGGTGCCGTTGCTGATATT+GGG | + | chr8_4:2487077-2487096 | Msa1307160:CDS | 50.0% |
GCGATCTGATGGAGCTGATG+TGG | + | chr8_4:2483128-2483147 | Msa1307160:intron | 55.0% | |
CCTCGATTGTTGTCACGCTG+CGG | + | chr8_4:2483151-2483170 | Msa1307160:intron | 55.0% | |
TGTCGGATTCCGTGCTTGAC+AGG | + | chr8_4:2483984-2484003 | Msa1307160:intron | 55.0% | |
GATTCCGTGCTTGACAGGTG+AGG | + | chr8_4:2483989-2484008 | Msa1307160:intron | 55.0% | |
CAGCAGTGTCTGTGCTTCAG+AGG | - | chr8_4:2485034-2485053 | None:intergenic | 55.0% | |
AGCACAGACACTGCTGTTGG+TGG | + | chr8_4:2485038-2485057 | Msa1307160:intron | 55.0% | |
GCACAGACACTGCTGTTGGT+GGG | + | chr8_4:2485039-2485058 | Msa1307160:intron | 55.0% | |
CGACATGTGTCAGATGCAGG+TGG | + | chr8_4:2485098-2485117 | Msa1307160:intron | 55.0% | |
CATGTGTCAGATGCAGGTGG+CGG | + | chr8_4:2485101-2485120 | Msa1307160:intron | 55.0% | |
GCAGCGACACTGCAAAGACA+CGG | - | chr8_4:2485357-2485376 | None:intergenic | 55.0% | |
! | GTCGTACTGGTGTCTGACAC+CGG | + | chr8_4:2485432-2485451 | Msa1307160:intron | 55.0% |
! | TCGTACTGGTGTCTGACACC+GGG | + | chr8_4:2485433-2485452 | Msa1307160:intron | 55.0% |
! | TGCTGTTGGTGGACATGTCC+CGG | - | chr8_4:2485454-2485473 | None:intergenic | 55.0% |
AGCAAGGACACTGCTGTTGG+TGG | - | chr8_4:2485465-2485484 | None:intergenic | 55.0% | |
TTGGCGACATGGGAATCAGC+AGG | - | chr8_4:2485811-2485830 | None:intergenic | 55.0% | |
AGGTGCACAGTTGGCGACAT+GGG | - | chr8_4:2485821-2485840 | None:intergenic | 55.0% | |
AAGGTGCACAGTTGGCGACA+TGG | - | chr8_4:2485822-2485841 | None:intergenic | 55.0% | |
CTGTGCACCTTCCAAATGGG+TGG | + | chr8_4:2485831-2485850 | Msa1307160:intron | 55.0% | |
GACCAACGGATCTGCCTCTT+CGG | + | chr8_4:2485869-2485888 | Msa1307160:intron | 55.0% | |
AGTAAAGCCTCGTCACCTCC+GGG | - | chr8_4:2486392-2486411 | None:intergenic | 55.0% | |
TCTCTGTTGCCGAGTCACTG+TGG | - | chr8_4:2486917-2486936 | None:intergenic | 55.0% | |
! | AGCTGCTGCTGGAAGAGTGT+TGG | - | chr8_4:2486973-2486992 | None:intergenic | 55.0% |
CCAATATCAGCAACGGCACC+AGG | - | chr8_4:2487079-2487098 | None:intergenic | 55.0% | |
!! | CCTGGTGCCGTTGCTGATAT+TGG | + | chr8_4:2487076-2487095 | Msa1307160:CDS | 55.0% |
CCGCAGCGTGACAACAATCG+AGG | - | chr8_4:2483154-2483173 | None:intergenic | 60.0% | |
!! | TGCTGTTGGTGGGCTTGTCC+CGG | + | chr8_4:2485049-2485068 | Msa1307160:intron | 60.0% |
GTACGACACGTGCCAGATGC+AGG | - | chr8_4:2485419-2485438 | None:intergenic | 60.0% | |
GCATCTGGCACGTGTCGTAC+TGG | + | chr8_4:2485419-2485438 | Msa1307160:intron | 60.0% | |
TGGGGGACTTCGGCACATCA+TGG | + | chr8_4:2485691-2485710 | Msa1307160:intron | 60.0% | |
GACCGAAGAGGCAGATCCGT+TGG | - | chr8_4:2485874-2485893 | None:intergenic | 60.0% | |
TGATCATCCCGGAGGTGACG+AGG | + | chr8_4:2486382-2486401 | Msa1307160:intron | 60.0% | |
!! | TGGTGGGCTTGTCCCGGTGT+CGG | + | chr8_4:2485055-2485074 | Msa1307160:intron | 65.0% |
TCTGACGCGTGTCCGACACC+GGG | - | chr8_4:2485070-2485089 | None:intergenic | 65.0% | |
GTCTGACGCGTGTCCGACAC+CGG | - | chr8_4:2485071-2485090 | None:intergenic | 65.0% | |
GTCGGACACGCGTCAGACAC+CGG | + | chr8_4:2485073-2485092 | Msa1307160:intron | 65.0% | |
CACGTGCCAGATGCAGGTGG+CGG | - | chr8_4:2485413-2485432 | None:intergenic | 65.0% | |
CGACACGTGCCAGATGCAGG+TGG | - | chr8_4:2485416-2485435 | None:intergenic | 65.0% | |
GGGACACCGCCACCTGCATC+TGG | + | chr8_4:2485404-2485423 | Msa1307160:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 2482525 | 2487516 | 2482525 | ID=Msa1307160;Name=Msa1307160 |
chr8_4 | mRNA | 2482525 | 2487516 | 2482525 | ID=Msa1307160-mRNA-1;Parent=Msa1307160;Name=Msa1307160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|0.66|0.75|1|0.66|0.75|4|362|133 |
chr8_4 | exon | 2482525 | 2482605 | 2482525 | ID=Msa1307160-mRNA-1:exon:777;Parent=Msa1307160-mRNA-1 |
chr8_4 | exon | 2482771 | 2482866 | 2482771 | ID=Msa1307160-mRNA-1:exon:778;Parent=Msa1307160-mRNA-1 |
chr8_4 | exon | 2486356 | 2486395 | 2486356 | ID=Msa1307160-mRNA-1:exon:779;Parent=Msa1307160-mRNA-1 |
chr8_4 | exon | 2486880 | 2487516 | 2486880 | ID=Msa1307160-mRNA-1:exon:780;Parent=Msa1307160-mRNA-1 |
chr8_4 | five_prime_UTR | 2482525 | 2482605 | 2482525 | ID=Msa1307160-mRNA-1:five_prime_utr;Parent=Msa1307160-mRNA-1 |
chr8_4 | five_prime_UTR | 2482771 | 2482779 | 2482771 | ID=Msa1307160-mRNA-1:five_prime_utr;Parent=Msa1307160-mRNA-1 |
chr8_4 | CDS | 2482780 | 2482866 | 2482780 | ID=Msa1307160-mRNA-1:cds;Parent=Msa1307160-mRNA-1 |
chr8_4 | CDS | 2486356 | 2486395 | 2486356 | ID=Msa1307160-mRNA-1:cds;Parent=Msa1307160-mRNA-1 |
chr8_4 | CDS | 2486880 | 2487154 | 2486880 | ID=Msa1307160-mRNA-1:cds;Parent=Msa1307160-mRNA-1 |
chr8_4 | three_prime_UTR | 2487155 | 2487516 | 2487155 | ID=Msa1307160-mRNA-1:three_prime_utr;Parent=Msa1307160-mRNA-1 |
Gene Sequence |
Protein sequence |