Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155520 | PNX93220.1 | 39.271 | 247 | 121 | 9 | 26 | 260 | 49 | 278 | 1.36e-22 | 118 |
| Msa0155520 | PNX93220.1 | 48.459 | 357 | 134 | 12 | 84 | 423 | 34 | 357 | 6.68e-64 | 249 |
| Msa0155520 | PNX93220.1 | 55.743 | 949 | 298 | 19 | 450 | 1354 | 110 | 980 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155520 | A0A2K3MQY0 | 39.271 | 247 | 121 | 9 | 26 | 260 | 49 | 278 | 6.49e-23 | 118 |
| Msa0155520 | A0A2K3MQY0 | 48.459 | 357 | 134 | 12 | 84 | 423 | 34 | 357 | 3.19e-64 | 249 |
| Msa0155520 | A0A2K3MQY0 | 55.743 | 949 | 298 | 19 | 450 | 1354 | 110 | 980 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036890 | Msa0155520 | 0.814353 | 1.608520e-51 | -8.615850e-47 |
| Msa0084970 | Msa0155520 | 0.815681 | 8.162587e-52 | -8.615850e-47 |
| Msa0109290 | Msa0155520 | 0.813425 | 2.576340e-51 | -8.615850e-47 |
| Msa0155520 | Msa0155720 | 0.921507 | 3.274103e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155520 | MtrunA17_Chr1g0166291 | 86.256 | 211 | 26 | 2 | 1146 | 1354 | 1048 | 1257 | 1.11e-98 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 194 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGAAAGCCTTAAGATTT+TGG | 0.090861 | 1_4:+20943134 | None:intergenic |
| AGAGAAACTGCTTCAATTTC+AGG | 0.144731 | 1_4:+20943646 | None:intergenic |
| ACTGCTTCTTGTTTATCTTT+TGG | 0.152263 | 1_4:+20948895 | None:intergenic |
| ACATATTCCTCTTTGGCTTT+TGG | 0.161328 | 1_4:+20946140 | None:intergenic |
| ACATCTTTGGACAAAGATTT+TGG | 0.164476 | 1_4:+20947676 | None:intergenic |
| CCGACAGCTGGAACGGTATT+TGG | 0.177666 | 1_4:-20943046 | Msa0155520:intron |
| ATCACATGAGAAGCCGTTTA+TGG | 0.178791 | 1_4:-20948932 | None:intergenic |
| TATTCTTCCTGATTTATTAT+AGG | 0.195366 | 1_4:+20943457 | None:intergenic |
| AACAATTCAATATTTGTAAA+TGG | 0.218628 | 1_4:-20942808 | Msa0155520:CDS |
| CTCCTCAACATATTCCTCTT+TGG | 0.228265 | 1_4:+20946133 | None:intergenic |
| TTCTGACGAACAATCGATTC+TGG | 0.230258 | 1_4:-20945634 | Msa0155520:CDS |
| ATCATTACATAGGAAGATTC+TGG | 0.234517 | 1_4:+20943532 | None:intergenic |
| ACATCTTCCACTTCAGCTTT+TGG | 0.236572 | 1_4:+20947163 | None:intergenic |
| AGCTTTCTCTTCAACATCTT+TGG | 0.246330 | 1_4:+20947015 | None:intergenic |
| AGTTTCTCCTTGAACATATA+TGG | 0.253875 | 1_4:+20946715 | None:intergenic |
| ACATCTATATCATTGTTAAA+AGG | 0.272063 | 1_4:+20945684 | None:intergenic |
| CAAGTGATGTTTGGATTATC+AGG | 0.272548 | 1_4:+20942736 | None:intergenic |
| CATGTTCACTGGTATCTTCT+AGG | 0.288006 | 1_4:+20946471 | None:intergenic |
| ACCCAAAATCTTAAGGCTTT+CGG | 0.289769 | 1_4:-20943136 | Msa0155520:CDS |
| AGGATTTGGAAAATTGAGTA+TGG | 0.303766 | 1_4:-20947938 | Msa0155520:CDS |
| ATCTTTGTCCAAAGATGTTA+TGG | 0.311605 | 1_4:-20947671 | Msa0155520:CDS |
| ATAGTTGCATCTTCAATATT+CGG | 0.314249 | 1_4:+20947121 | None:intergenic |
| GCTCGTGGCCGTGAAACTTT+TGG | 0.321564 | 1_4:+20943366 | None:intergenic |
| GAAAGCTACAATTGATTCAT+TGG | 0.324524 | 1_4:-20946999 | Msa0155520:CDS |
| GAAGCAGTTTCTCTTATTGC+AGG | 0.337221 | 1_4:-20943637 | Msa0155520:CDS |
| TGGAGAGAAAATAGTTACTA+TGG | 0.340326 | 1_4:-20942548 | Msa0155520:CDS |
| ACATATATGGCATTAGTAAA+AGG | 0.342779 | 1_4:+20946728 | None:intergenic |
| ACATCTTCAGATTCATCAAT+TGG | 0.346902 | 1_4:+20946929 | None:intergenic |
| TCAAGGAGAAACTGCAATCT+TGG | 0.351627 | 1_4:-20946705 | Msa0155520:CDS |
| ATTGAGTATGGGCAAAGAAA+TGG | 0.353064 | 1_4:-20947926 | Msa0155520:CDS |
| CCTTCGACTGATTCGGCATA+TGG | 0.360198 | 1_4:+20945256 | None:intergenic |
| TTGTTGTTGTTGCCAATACT+TGG | 0.362848 | 1_4:+20944329 | None:intergenic |
| CTATCCAGCCATTCACTTCA+AGG | 0.367802 | 1_4:-20944539 | Msa0155520:CDS |
| TCATGAAAGTGACGTAAATA+TGG | 0.370828 | 1_4:-20947200 | Msa0155520:CDS |
| CGAGCTTGAAAGTGATTCAT+TGG | 0.373757 | 1_4:-20947239 | Msa0155520:CDS |
| CATTTCAACCCAAAATCTTA+AGG | 0.374331 | 1_4:-20943143 | Msa0155520:CDS |
| ATATCTAAAGCTTCATTCAT+TGG | 0.375973 | 1_4:-20942508 | Msa0155520:CDS |
| TAATGAAAGTGAAATAAATA+TGG | 0.378007 | 1_4:-20946966 | Msa0155520:CDS |
| TCGATTCTGGGAAATTCATT+TGG | 0.378262 | 1_4:-20945621 | Msa0155520:CDS |
| CGATTCTTCTCGTCTTGATT+CGG | 0.381521 | 1_4:+20942672 | None:intergenic |
| AAGAAGCAATTGAGAAAGAA+AGG | 0.383115 | 1_4:-20942906 | Msa0155520:CDS |
| TCATGCAAGTGACATAAGTA+TGG | 0.389109 | 1_4:-20946177 | Msa0155520:CDS |
| AGCTTTCTTGTAACCATCAT+TGG | 0.389977 | 1_4:+20947528 | None:intergenic |
| CAAGGTTGAAAATGATTCAT+TGG | 0.390689 | 1_4:-20945940 | Msa0155520:CDS |
| TGAAAATGAGAATCAGCATT+TGG | 0.398342 | 1_4:+20944488 | None:intergenic |
| AAGCAGTATAGGAGCAATAA+TGG | 0.399852 | 1_4:-20948879 | Msa0155520:intron |
| TGCATCTGACAAGTGATGTT+TGG | 0.400511 | 1_4:+20942727 | None:intergenic |
| GAATATTGAAGATGCAACTA+TGG | 0.402406 | 1_4:-20947119 | Msa0155520:CDS |
| ATCAAATGATTCAGAACTTC+AGG | 0.404723 | 1_4:-20944600 | Msa0155520:CDS |
| TGATTGAAGAGACTTCATTA+AGG | 0.408571 | 1_4:+20945125 | None:intergenic |
| GATATCACAGTAGGGTCTAA+TGG | 0.409358 | 1_4:-20943730 | Msa0155520:CDS |
| GCATGAAAGTGGTTATTCAT+TGG | 0.410863 | 1_4:-20946210 | Msa0155520:CDS |
| CAAATACCGTTCCAGCTGTC+GGG | 0.412049 | 1_4:+20943047 | None:intergenic |
| AACAATGATATAGATGTTCA+AGG | 0.412073 | 1_4:-20945678 | Msa0155520:CDS |
| GGCTTCTGATCATGATCCAT+TGG | 0.413024 | 1_4:-20946684 | Msa0155520:CDS |
| TATGGTGCCTATAATAAATC+AGG | 0.415770 | 1_4:-20943464 | Msa0155520:CDS |
| TACAAGAAGTTCACTTGAAA+AGG | 0.416160 | 1_4:-20946873 | Msa0155520:CDS |
| ACTAATGCCATATATGTTCA+AGG | 0.418629 | 1_4:-20946722 | Msa0155520:CDS |
| GAAAATAAATTGAGCGAAAG+TGG | 0.424067 | 1_4:-20943841 | Msa0155520:CDS |
| ACATCTTTGGCCTTATCCAT+TGG | 0.424419 | 1_4:+20947028 | None:intergenic |
| TTGAGTATGGGCAAAGAAAT+GGG | 0.424867 | 1_4:-20947925 | Msa0155520:CDS |
| AGATAAACAAGAAGCAGTAT+AGG | 0.424953 | 1_4:-20948890 | Msa0155520:CDS |
| TTGTCAAGTTCTTCAATTGA+AGG | 0.427408 | 1_4:-20945217 | Msa0155520:CDS |
| TCTGACGAACAATCGATTCT+GGG | 0.435765 | 1_4:-20945633 | Msa0155520:CDS |
| TACTGTGATATCATATGTAT+TGG | 0.436564 | 1_4:+20943741 | None:intergenic |
| GATACATGTTCAACCATAAA+CGG | 0.438611 | 1_4:+20948919 | None:intergenic |
| CATGATGAGTATGGTCTCAT+TGG | 0.441317 | 1_4:-20942568 | Msa0155520:CDS |
| GATGTTCAAGAGGAAGGTTC+AGG | 0.442410 | 1_4:-20947145 | Msa0155520:CDS |
| TAATGAAAGTGACATAGATA+TGG | 0.444720 | 1_4:-20945907 | Msa0155520:CDS |
| GTTTGAAAGTGATTATTCAT+TGG | 0.446746 | 1_4:-20947473 | Msa0155520:CDS |
| GAAGATGCAACAACTGAACT+TGG | 0.449085 | 1_4:-20946089 | Msa0155520:CDS |
| TCAAATGATTCCAATGGATA+AGG | 0.449088 | 1_4:-20947038 | Msa0155520:CDS |
| TAAGCAAGATCAATGCATAA+AGG | 0.450069 | 1_4:-20943791 | Msa0155520:CDS |
| AGAAGCAACTTCACTGATAG+TGG | 0.454090 | 1_4:-20942863 | Msa0155520:CDS |
| TCATGCAAGTGGTACAAGTA+TGG | 0.457580 | 1_4:-20947440 | Msa0155520:CDS |
| ACATCTTTGACCTCATCTGT+TGG | 0.458996 | 1_4:+20946005 | None:intergenic |
| CTTCTCGTCTTGATTCGGTT+CGG | 0.459344 | 1_4:+20942677 | None:intergenic |
| AAATGTGGTGTCCGGTCTCT+TGG | 0.461743 | 1_4:+20943161 | None:intergenic |
| TTTATAGGGGAAGAAATGAA+TGG | 0.463355 | 1_4:-20945301 | Msa0155520:intron |
| GCTCTCACCTTCGACTGATT+CGG | 0.464539 | 1_4:+20945249 | None:intergenic |
| TCTGCTCTACATTTCCCTGC+TGG | 0.469329 | 1_4:+20943389 | None:intergenic |
| GCCACGAGCATGCTTAAATC+AGG | 0.472448 | 1_4:-20943352 | Msa0155520:CDS |
| CGAATCAAGACGAGAAGAAT+CGG | 0.472470 | 1_4:-20942671 | Msa0155520:CDS |
| TGTTGTTGTTGCCAATACTT+GGG | 0.478593 | 1_4:+20944330 | None:intergenic |
| TGATCTTGCTTAGAATCTTG+TGG | 0.479810 | 1_4:+20943802 | None:intergenic |
| TATCTCATTTGCATGTTCAC+TGG | 0.480368 | 1_4:+20946460 | None:intergenic |
| GATGATCATGAAAGAGCTGC+AGG | 0.481251 | 1_4:-20945774 | Msa0155520:CDS |
| AGAGCAATGCCATTCTGATA+TGG | 0.481443 | 1_4:-20943482 | Msa0155520:CDS |
| GATGTTGAAGATAAAGCTAT+AGG | 0.483047 | 1_4:-20945987 | Msa0155520:CDS |
| TGTGCCACAATTGACAAGCT+TGG | 0.484968 | 1_4:-20943298 | Msa0155520:CDS |
| GGAAATTCATTTGGTGGTGA+AGG | 0.487139 | 1_4:-20945612 | Msa0155520:intron |
| GATGTTGAGGAGAAATCTAT+AGG | 0.488422 | 1_4:-20945852 | Msa0155520:CDS |
| TGTAATGATAAAGAAATTTG+AGG | 0.491038 | 1_4:-20943518 | Msa0155520:CDS |
| TTGGGTTGAAATGTGGTGTC+CGG | 0.493063 | 1_4:+20943153 | None:intergenic |
| GTTGAAAATGATTCATTGGA+AGG | 0.494854 | 1_4:-20945936 | Msa0155520:CDS |
| TCAATAGCTGAAGCCAATGA+TGG | 0.495105 | 1_4:-20947541 | Msa0155520:CDS |
| AGAAGCAATTGAGAAAGAAA+GGG | 0.495359 | 1_4:-20942905 | Msa0155520:CDS |
| AGATGTTGAGGAGAAAGATA+CGG | 0.500407 | 1_4:-20946912 | Msa0155520:CDS |
| AAATTTCTTTATCATTACAT+AGG | 0.501919 | 1_4:+20943522 | None:intergenic |
| TCAGTGCCTCATGATGAGTA+TGG | 0.502689 | 1_4:-20942577 | Msa0155520:CDS |
| GTGTCATCTATTTCACCTAA+AGG | 0.502811 | 1_4:-20942397 | Msa0155520:CDS |
| GCTACAATTGATTCATTGGA+AGG | 0.508441 | 1_4:-20946995 | Msa0155520:CDS |
| CCAACATCCTCTTCAGCTGT+TGG | 0.508514 | 1_4:+20947403 | None:intergenic |
| CTTGAAAGTGATTCATTGGA+AGG | 0.509641 | 1_4:-20947235 | Msa0155520:CDS |
| GTCTGTGCCATGACTAGAAC+AGG | 0.509770 | 1_4:+20942460 | None:intergenic |
| TTTCTGAACCACCGAGAGAT+CGG | 0.510422 | 1_4:+20943098 | None:intergenic |
| TCTCGAGACTCCCCGACAGC+TGG | 0.512920 | 1_4:-20943058 | Msa0155520:CDS |
| GATGTTGAGGAGAAAGATAC+GGG | 0.513491 | 1_4:-20946911 | Msa0155520:CDS |
| ATATCACTAGAAATGTTTGA+AGG | 0.513580 | 1_4:+20946380 | None:intergenic |
| ATCATATGTATTGGCCATGT+CGG | 0.520487 | 1_4:+20943750 | None:intergenic |
| TTCTGAACCACCGAGAGATC+GGG | 0.520899 | 1_4:+20943099 | None:intergenic |
| ATTCTGGGAAATTCATTTGG+TGG | 0.521090 | 1_4:-20945618 | Msa0155520:CDS |
| GCATATCTATAAATACCAGC+AGG | 0.522867 | 1_4:-20943404 | Msa0155520:CDS |
| TTCACACTATATTGAAAGCA+AGG | 0.523062 | 1_4:-20945958 | Msa0155520:CDS |
| AATGCATCCAAAAGCTGAAG+TGG | 0.523497 | 1_4:-20947170 | Msa0155520:CDS |
| TGAGGAGAAAGCTATAGGAT+TGG | 0.523596 | 1_4:-20946117 | Msa0155520:CDS |
| GACATGGTGTCCCGATCTCT+CGG | 0.524228 | 1_4:-20943109 | Msa0155520:CDS |
| AATTCAATATTTGTAAATGG+TGG | 0.526172 | 1_4:-20942805 | Msa0155520:CDS |
| AATGCATCCAACAGCTGAAG+AGG | 0.532756 | 1_4:-20947410 | Msa0155520:CDS |
| CTCGTCTTGATTCGGTTCGG+AGG | 0.535593 | 1_4:+20942680 | None:intergenic |
| GGAGTCTCGAGAGCAACAAC+GGG | 0.536250 | 1_4:+20943069 | None:intergenic |
| AAAACAAGCATGCATGAAAG+TGG | 0.536308 | 1_4:-20946221 | Msa0155520:CDS |
| ATTGCCTTGAAGTGAATGGC+TGG | 0.536724 | 1_4:+20944535 | None:intergenic |
| CCAACAGCTGAAGAGGATGT+TGG | 0.537357 | 1_4:-20947403 | Msa0155520:CDS |
| TATGTTGAGGAGAAAGCTAT+AGG | 0.538789 | 1_4:-20946122 | Msa0155520:CDS |
| ATCCAGGATCACCAAGAGAC+CGG | 0.541341 | 1_4:-20943172 | Msa0155520:intron |
| CAACAATGGAGAAAATTTCA+AGG | 0.542664 | 1_4:-20944312 | Msa0155520:intron |
| AGTGATATAACAATAGAACT+TGG | 0.543347 | 1_4:-20946365 | Msa0155520:CDS |
| ACTTGGAAAAGATATACAAC+AGG | 0.544735 | 1_4:-20947611 | Msa0155520:CDS |
| CGGAGGTTGAGATTGAAGCT+TGG | 0.544850 | 1_4:+20942697 | None:intergenic |
| AATACATATGATATCACAGT+AGG | 0.544931 | 1_4:-20943739 | Msa0155520:CDS |
| ATTCATTGCCTTGAAGTGAA+TGG | 0.546113 | 1_4:+20944531 | None:intergenic |
| AGAGCAGACCAAAAGTTTCA+CGG | 0.547609 | 1_4:-20943374 | Msa0155520:CDS |
| AAGAAGTTCACTTGAAAAGG+AGG | 0.547915 | 1_4:-20946870 | Msa0155520:CDS |
| CAAAAGTCAGATGGAAGAGA+TGG | 0.549084 | 1_4:-20944404 | Msa0155520:CDS |
| ATTGATTCATTGGAAGGAGA+TGG | 0.549518 | 1_4:-20946989 | Msa0155520:CDS |
| CCAAATACCGTTCCAGCTGT+CGG | 0.551035 | 1_4:+20943046 | None:intergenic |
| GAGAAGTCAAATGATTCCAA+TGG | 0.552359 | 1_4:-20947044 | Msa0155520:CDS |
| GATGATCATGAAATAACTGC+AGG | 0.553450 | 1_4:-20946833 | Msa0155520:CDS |
| CAGGAACCACAGAAGTATCA+AGG | 0.556349 | 1_4:+20943665 | None:intergenic |
| TAAATGGTGGTTATGAAACA+AGG | 0.558662 | 1_4:-20942792 | Msa0155520:CDS |
| ATTGTTTGAACTTAATTCAG+TGG | 0.559516 | 1_4:+20942825 | None:intergenic |
| ATGGCCAAGCTTGTCAATTG+TGG | 0.567580 | 1_4:+20943294 | None:intergenic |
| TCTTGATTGCACACATGACA+AGG | 0.567651 | 1_4:-20943599 | Msa0155520:CDS |
| AATTCATCCAAAAGCCAAAG+AGG | 0.568158 | 1_4:-20946147 | Msa0155520:CDS |
| GGATTTGGAAAATTGAGTAT+GGG | 0.570640 | 1_4:-20947937 | Msa0155520:CDS |
| TGAGGAGAAATCTATAGGAA+TGG | 0.578126 | 1_4:-20945847 | Msa0155520:CDS |
| GGGAGTCTCGAGAGCAACAA+CGG | 0.580719 | 1_4:+20943068 | None:intergenic |
| TTATGTCCGCAAAAGTCAGA+TGG | 0.580735 | 1_4:-20944413 | Msa0155520:CDS |
| TAAGGCTTTCGGAGGAGACA+TGG | 0.581347 | 1_4:-20943125 | Msa0155520:CDS |
| TCTGAAGACTTATCAAGCAA+TGG | 0.583115 | 1_4:+20942640 | None:intergenic |
| TTCGTCAGAAGAAGCCAAGA+TGG | 0.583862 | 1_4:+20945647 | None:intergenic |
| AACAACACTTCTGCTATCAA+AGG | 0.584221 | 1_4:-20947898 | Msa0155520:intron |
| AGAAGCTCCTGTTCTAGTCA+TGG | 0.584849 | 1_4:-20942467 | Msa0155520:CDS |
| TTATAGGCACCATATCAGAA+TGG | 0.585003 | 1_4:+20943473 | None:intergenic |
| GTGGAAGATGTTCAAGAGGA+AGG | 0.586720 | 1_4:-20947151 | Msa0155520:CDS |
| ACATCATTGGCCTCATCTGT+CGG | 0.587067 | 1_4:+20947304 | None:intergenic |
| AGATGATAGCTTGTCAAACA+AGG | 0.589755 | 1_4:-20942620 | Msa0155520:CDS |
| AGACTCCCCGACAGCTGGAA+CGG | 0.592227 | 1_4:-20943053 | Msa0155520:CDS |
| GCTGCAGGGTTGAGTTCTGA+TGG | 0.593083 | 1_4:-20945759 | Msa0155520:CDS |
| TAATGTCCTTGATACTTCTG+TGG | 0.593110 | 1_4:-20943671 | Msa0155520:CDS |
| AGCCAAAGAGGAATATGTTG+AGG | 0.593852 | 1_4:-20946135 | Msa0155520:CDS |
| GTTGTTGTTGCCAATACTTG+GGG | 0.597201 | 1_4:+20944331 | None:intergenic |
| TGAAGTGGAAGATGTTCAAG+AGG | 0.598165 | 1_4:-20947155 | Msa0155520:CDS |
| GGGTCTAATGGAGACTGCAA+TGG | 0.599019 | 1_4:-20943718 | Msa0155520:CDS |
| GCATCATGAGCATCTTCTTG+TGG | 0.606472 | 1_4:+20946332 | None:intergenic |
| AAATACCGTTCCAGCTGTCG+GGG | 0.609455 | 1_4:+20943048 | None:intergenic |
| TCGCTGCAAGAAGAAATTCA+CGG | 0.610643 | 1_4:-20947358 | Msa0155520:CDS |
| CAGACACAAGATAACAATGC+TGG | 0.612904 | 1_4:-20942442 | Msa0155520:CDS |
| GAAGAAGATGCTCATGCAAG+TGG | 0.614702 | 1_4:-20947451 | Msa0155520:CDS |
| TGATGAATCTGAAGATGTTG+AGG | 0.618336 | 1_4:-20946924 | Msa0155520:CDS |
| CAAAATCTTAAGGCTTTCGG+AGG | 0.622089 | 1_4:-20943133 | Msa0155520:CDS |
| TGATGAAGCTGAAGATGTTG+AGG | 0.624189 | 1_4:-20945865 | Msa0155520:CDS |
| GCTACGCGGTTTGATTCTAA+CGG | 0.628653 | 1_4:-20947508 | Msa0155520:CDS |
| CCATATGCCGAATCAGTCGA+AGG | 0.632461 | 1_4:-20945256 | Msa0155520:CDS |
| ACCTGATTTAAGCATGCTCG+TGG | 0.633778 | 1_4:+20943351 | None:intergenic |
| TCAAATGATTCCGACAGATG+AGG | 0.633934 | 1_4:-20947314 | Msa0155520:CDS |
| TGAGGAGAAAGATACGGGAA+TGG | 0.638620 | 1_4:-20946906 | Msa0155520:CDS |
| AGTATTGGCAACAACAACAA+TGG | 0.643813 | 1_4:-20944326 | Msa0155520:CDS |
| AAACAAGGGACAGTGTAACA+AGG | 0.644641 | 1_4:-20942777 | Msa0155520:CDS |
| CATATCTATAAATACCAGCA+GGG | 0.645811 | 1_4:-20943403 | Msa0155520:CDS |
| TCAGATGATTCCAACAGATG+AGG | 0.648461 | 1_4:-20946015 | Msa0155520:CDS |
| ATACATATGATATCACAGTA+GGG | 0.650083 | 1_4:-20943738 | Msa0155520:CDS |
| ATGAGACCATACTCATCATG+AGG | 0.664138 | 1_4:+20942571 | None:intergenic |
| ATGATCATGAAAGAGCTGCA+GGG | 0.664654 | 1_4:-20945773 | Msa0155520:CDS |
| TCAAGAGTACAAGTCCGACA+TGG | 0.668203 | 1_4:-20943764 | Msa0155520:CDS |
| CTTGATTGCACACATGACAA+GGG | 0.676782 | 1_4:-20943598 | Msa0155520:CDS |
| AAATGGTGGTTATGAAACAA+GGG | 0.678393 | 1_4:-20942791 | Msa0155520:CDS |
| GAAAAGAAAAGCGCAAATTG+CGG | 0.678461 | 1_4:-20942375 | Msa0155520:CDS |
| TTGTTGTTGCCAATACTTGG+GGG | 0.678840 | 1_4:+20944332 | None:intergenic |
| GAAGTCTCTTCAATCAAACA+AGG | 0.681501 | 1_4:-20945118 | Msa0155520:intron |
| CGAGCATGCTTAAATCAGGT+AGG | 0.695668 | 1_4:-20943348 | Msa0155520:CDS |
| ATGGTGTCCCGATCTCTCGG+TGG | 0.717382 | 1_4:-20943106 | Msa0155520:CDS |
| ATGGTTACAAGAAAGCTACG+CGG | 0.827440 | 1_4:-20947522 | Msa0155520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAAGCATTTTAATA+AGG | - | chr1_4:20942676-20942695 | Msa0155520:CDS | 10.0% |
| !!! | TATAATTTTTTGTTTAAACT+AGG | - | chr1_4:20947124-20947143 | Msa0155520:CDS | 10.0% |
| !!! | ATTAATTTGTTTATCAAAAT+AGG | - | chr1_4:20947379-20947398 | Msa0155520:CDS | 10.0% |
| !!! | TTAATTTGTTTATCAAAATA+GGG | - | chr1_4:20947380-20947399 | Msa0155520:CDS | 10.0% |
| !!! | TATATGTTCAATTACTTTTA+AGG | - | chr1_4:20942825-20942844 | Msa0155520:CDS | 15.0% |
| !! | AATAGTTCAAGATATATTAA+AGG | + | chr1_4:20943074-20943093 | None:intergenic | 15.0% |
| !!! | TTTATTTGTTATTTTTGTAG+AGG | - | chr1_4:20943463-20943482 | Msa0155520:CDS | 15.0% |
| !!! | AATTTTTATATCACTAGAAA+TGG | + | chr1_4:20943621-20943640 | None:intergenic | 15.0% |
| !! | TAATGAAAGTGAAATAAATA+TGG | - | chr1_4:20944288-20944307 | Msa0155520:intron | 15.0% |
| !!! | ATTAATTTTTCATTTTGTAG+AGG | - | chr1_4:20944726-20944745 | Msa0155520:intron | 15.0% |
| !! | AATGAGATAATAAATAGTTA+AGG | - | chr1_4:20945792-20945811 | Msa0155520:CDS | 15.0% |
| !! | AAATTTCTTTATCATTACAT+AGG | + | chr1_4:20947735-20947754 | None:intergenic | 15.0% |
| !!! | TTTCATTTTTACTTTGTATT+TGG | - | chr1_4:20948003-20948022 | Msa0155520:intron | 15.0% |
| !!! | TTCATTTTTACTTTGTATTT+GGG | - | chr1_4:20948004-20948023 | Msa0155520:intron | 15.0% |
| !! | AACAATTCAATATTTGTAAA+TGG | - | chr1_4:20948446-20948465 | Msa0155520:intron | 15.0% |
| !! | AATATCATCATCAATAATCA+TGG | - | chr1_4:20942994-20943013 | Msa0155520:intron | 20.0% |
| !! | AGTGATATAAAAATTGAACT+TGG | - | chr1_4:20943626-20943645 | Msa0155520:CDS | 20.0% |
| !!! | AAAGAATTTTTCAAATCCAA+TGG | + | chr1_4:20944589-20944608 | None:intergenic | 20.0% |
| !! | ACATCTATATCATTGTTAAA+AGG | + | chr1_4:20945573-20945592 | None:intergenic | 20.0% |
| !!! | AGAAATTTTGTTACTTATGA+TGG | + | chr1_4:20945836-20945855 | None:intergenic | 20.0% |
| !! | TCATAAGTAACAAAATTTCT+TGG | - | chr1_4:20945836-20945855 | Msa0155520:CDS | 20.0% |
| !!! | TATTTGTGATTCTGTTTTAT+AGG | - | chr1_4:20945938-20945957 | Msa0155520:CDS | 20.0% |
| !!! | ATTTGTGATTCTGTTTTATA+GGG | - | chr1_4:20945939-20945958 | Msa0155520:CDS | 20.0% |
| !! | ATGTTTCAACAATTAAATCT+AGG | + | chr1_4:20946495-20946514 | None:intergenic | 20.0% |
| !! | AACATCATTAGATTTCAATT+TGG | - | chr1_4:20946510-20946529 | Msa0155520:CDS | 20.0% |
| !!! | TTTAATATAAGTTTTCCATG+AGG | + | chr1_4:20947259-20947278 | None:intergenic | 20.0% |
| !! | ATAAGAGGTTATGTATTATA+AGG | + | chr1_4:20947326-20947345 | None:intergenic | 20.0% |
| !! | TGTAATGATAAAGAAATTTG+AGG | - | chr1_4:20947736-20947755 | Msa0155520:CDS | 20.0% |
| !! | TATTCTTCCTGATTTATTAT+AGG | + | chr1_4:20947800-20947819 | None:intergenic | 20.0% |
| !! | TGTTAACAATTCAATCTATA+TGG | - | chr1_4:20948313-20948332 | Msa0155520:intron | 20.0% |
| !! | AATTCAATATTTGTAAATGG+TGG | - | chr1_4:20948449-20948468 | Msa0155520:intron | 20.0% |
| !! | TCTTTTGTGTTTGCAAAAAA+GGG | - | chr1_4:20942440-20942459 | Msa0155520:CDS | 25.0% |
| ! | TTAAATTATGGCATGAATGA+TGG | + | chr1_4:20942476-20942495 | None:intergenic | 25.0% |
| ! | ATCATTCATGCCATAATTTA+AGG | - | chr1_4:20942475-20942494 | Msa0155520:CDS | 25.0% |
| ! | TCATTCATGCCATAATTTAA+GGG | - | chr1_4:20942476-20942495 | Msa0155520:CDS | 25.0% |
| ! | AATTGAATGTAACATGTGTT+TGG | + | chr1_4:20942583-20942602 | None:intergenic | 25.0% |
| !! | TTTTAAATTAGCACAAGACA+CGG | + | chr1_4:20942665-20942684 | None:intergenic | 25.0% |
| ! | TTCTCAATAATCTAAGAGAA+TGG | + | chr1_4:20942766-20942785 | None:intergenic | 25.0% |
| ! | ATAAAGCAACACCATATTAT+TGG | - | chr1_4:20942891-20942910 | Msa0155520:CDS | 25.0% |
| ! | TTTAACATTGCTTAAATTGC+AGG | - | chr1_4:20943296-20943315 | Msa0155520:CDS | 25.0% |
| ! | TTTATTCAGCATTTCAACAA+TGG | + | chr1_4:20943390-20943409 | None:intergenic | 25.0% |
| !!! | ATGCTGAATAAAATTTGTTG+AGG | - | chr1_4:20943398-20943417 | Msa0155520:CDS | 25.0% |
| ! | GTTTGAAAGTGATTATTCAT+TGG | - | chr1_4:20943781-20943800 | Msa0155520:CDS | 25.0% |
| !! | ATCTTTTTCTTCAACATCAT+TGG | + | chr1_4:20943966-20943985 | None:intergenic | 25.0% |
| ! | ATAGTTGCATCTTCAATATT+CGG | + | chr1_4:20944136-20944155 | None:intergenic | 25.0% |
| ! | ACATATATGGCATTAGTAAA+AGG | + | chr1_4:20944529-20944548 | None:intergenic | 25.0% |
| !! | GATTTGAAAAATTCTTTTGC+TGG | - | chr1_4:20944592-20944611 | Msa0155520:CDS | 25.0% |
| ! | ATATCACTAGAAATGTTTGA+AGG | + | chr1_4:20944877-20944896 | None:intergenic | 25.0% |
| ! | AGTGATATAACAATAGAACT+TGG | - | chr1_4:20944889-20944908 | Msa0155520:intron | 25.0% |
| ! | TAATGAAAGTGACATAGATA+TGG | - | chr1_4:20945347-20945366 | Msa0155520:intron | 25.0% |
| ! | GAAGATGAAGATAAAAATGA+TGG | - | chr1_4:20945534-20945553 | Msa0155520:intron | 25.0% |
| ! | AACAATGATATAGATGTTCA+AGG | - | chr1_4:20945576-20945595 | Msa0155520:intron | 25.0% |
| !! | ACTTATGATGGAATTTCTTT+CGG | + | chr1_4:20945824-20945843 | None:intergenic | 25.0% |
| !! | TTTGTGATTCTGTTTTATAG+GGG | - | chr1_4:20945940-20945959 | Msa0155520:CDS | 25.0% |
| ! | ACTTATTCGAACTTATTTAC+TGG | - | chr1_4:20946244-20946263 | Msa0155520:CDS | 25.0% |
| ! | TTCTATAAACTCTCAAGAAT+AGG | - | chr1_4:20946344-20946363 | Msa0155520:CDS | 25.0% |
| !! | TTAATCTCTTTTCATTGTCT+TGG | - | chr1_4:20946573-20946592 | Msa0155520:intron | 25.0% |
| !! | TGGTTTTCTAAACTTAAAGA+TGG | + | chr1_4:20947215-20947234 | None:intergenic | 25.0% |
| ! | TACTGTGATATCATATGTAT+TGG | + | chr1_4:20947516-20947535 | None:intergenic | 25.0% |
| ! | AATACATATGATATCACAGT+AGG | - | chr1_4:20947515-20947534 | Msa0155520:CDS | 25.0% |
| ! | ATACATATGATATCACAGTA+GGG | - | chr1_4:20947516-20947535 | Msa0155520:CDS | 25.0% |
| ! | ATGTTGTTAGAAAGTAAACA+TGG | + | chr1_4:20947982-20948001 | None:intergenic | 25.0% |
| !! | ATTTTTACTTTGTATTTGGG+TGG | - | chr1_4:20948007-20948026 | Msa0155520:intron | 25.0% |
| ! | ATTGTTTGAACTTAATTCAG+TGG | + | chr1_4:20948432-20948451 | None:intergenic | 25.0% |
| !! | ATATCTAAAGCTTCATTCAT+TGG | - | chr1_4:20948746-20948765 | Msa0155520:intron | 25.0% |
| GATACATGTTCAACCATAAA+CGG | + | chr1_4:20942338-20942357 | None:intergenic | 30.0% | |
| !! | TGCTTCTTGTTTATCTTTTG+GGG | + | chr1_4:20942360-20942379 | None:intergenic | 30.0% |
| !! | CTGCTTCTTGTTTATCTTTT+GGG | + | chr1_4:20942361-20942380 | None:intergenic | 30.0% |
| !! | ACTGCTTCTTGTTTATCTTT+TGG | + | chr1_4:20942362-20942381 | None:intergenic | 30.0% |
| AGATAAACAAGAAGCAGTAT+AGG | - | chr1_4:20942364-20942383 | Msa0155520:CDS | 30.0% | |
| CAAACACAAAAGAGAAAACT+TGG | + | chr1_4:20942433-20942452 | None:intergenic | 30.0% | |
| ! | CTCTTTTGTGTTTGCAAAAA+AGG | - | chr1_4:20942439-20942458 | Msa0155520:CDS | 30.0% |
| AACCGAAAGTGAACATTATT+TGG | - | chr1_4:20942735-20942754 | Msa0155520:CDS | 30.0% | |
| GACCAAATAATGTTCACTTT+CGG | + | chr1_4:20942740-20942759 | None:intergenic | 30.0% | |
| TATTGAGAATTCATGACCAA+AGG | - | chr1_4:20942777-20942796 | Msa0155520:CDS | 30.0% | |
| ! | TTATGCATAAGCCTCATTTT+GGG | + | chr1_4:20942875-20942894 | None:intergenic | 30.0% |
| ! | TTTATGCATAAGCCTCATTT+TGG | + | chr1_4:20942876-20942895 | None:intergenic | 30.0% |
| GATTTGAACAGCCAATAATA+TGG | + | chr1_4:20942905-20942924 | None:intergenic | 30.0% | |
| CAAATCAAGTATAAACACTC+TGG | - | chr1_4:20942919-20942938 | Msa0155520:intron | 30.0% | |
| GTCCTCAAATGTTTAAATCT+AGG | - | chr1_4:20942963-20942982 | Msa0155520:intron | 30.0% | |
| CTCCTAGATTTAAACATTTG+AGG | + | chr1_4:20942968-20942987 | None:intergenic | 30.0% | |
| CATCATCAATAATCATGGTA+TGG | - | chr1_4:20942999-20943018 | Msa0155520:intron | 30.0% | |
| CAATAATCATGGTATGGTAA+TGG | - | chr1_4:20943005-20943024 | Msa0155520:intron | 30.0% | |
| TTGTTAAATAGCGACTATAG+AGG | - | chr1_4:20943192-20943211 | Msa0155520:intron | 30.0% | |
| TTTCAAAACGCAGAAAATAG+TGG | + | chr1_4:20943254-20943273 | None:intergenic | 30.0% | |
| ATTGCTTAAATTGCAGGATT+TGG | - | chr1_4:20943302-20943321 | Msa0155520:CDS | 30.0% | |
| AGGATTTGGAAAATTGAGTA+TGG | - | chr1_4:20943316-20943335 | Msa0155520:CDS | 30.0% | |
| GGATTTGGAAAATTGAGTAT+GGG | - | chr1_4:20943317-20943336 | Msa0155520:CDS | 30.0% | |
| ! | ACATCTTTGGACAAAGATTT+TGG | + | chr1_4:20943581-20943600 | None:intergenic | 30.0% |
| ATCTTTGTCCAAAGATGTTA+TGG | - | chr1_4:20943583-20943602 | Msa0155520:CDS | 30.0% | |
| !! | AGCTTTTTCCATAACATCTT+TGG | + | chr1_4:20943594-20943613 | None:intergenic | 30.0% |
| ACTTGGAAAAGATATACAAC+AGG | - | chr1_4:20943643-20943662 | Msa0155520:CDS | 30.0% | |
| TCATGAAAGTGACGTAAATA+TGG | - | chr1_4:20944054-20944073 | Msa0155520:intron | 30.0% | |
| GAATATTGAAGATGCAACTA+TGG | - | chr1_4:20944135-20944154 | Msa0155520:intron | 30.0% | |
| TCAAATGATTCCAATGGATA+AGG | - | chr1_4:20944216-20944235 | Msa0155520:intron | 30.0% | |
| ! | GAAAGCTACAATTGATTCAT+TGG | - | chr1_4:20944255-20944274 | Msa0155520:intron | 30.0% |
| ACATCTTCAGATTCATCAAT+TGG | + | chr1_4:20944328-20944347 | None:intergenic | 30.0% | |
| TACAAGAAGTTCACTTGAAA+AGG | - | chr1_4:20944381-20944400 | Msa0155520:CDS | 30.0% | |
| ACTAATGCCATATATGTTCA+AGG | - | chr1_4:20944532-20944551 | Msa0155520:CDS | 30.0% | |
| AGTTTCTCCTTGAACATATA+TGG | + | chr1_4:20944542-20944561 | None:intergenic | 30.0% | |
| ! | AAAAATTCTTTTGCTGGTGA+AGG | - | chr1_4:20944598-20944617 | Msa0155520:CDS | 30.0% |
| !!! | AGCTTTTTCATAAGCATCAT+TGG | + | chr1_4:20944992-20945011 | None:intergenic | 30.0% |
| ATGCTTATGAAAAAGCTACA+TGG | - | chr1_4:20944995-20945014 | Msa0155520:intron | 30.0% | |
| GATGTTGAAGATAAAGCTAT+AGG | - | chr1_4:20945267-20945286 | Msa0155520:CDS | 30.0% | |
| TTCACACTATATTGAAAGCA+AGG | - | chr1_4:20945296-20945315 | Msa0155520:CDS | 30.0% | |
| CAAGGTTGAAAATGATTCAT+TGG | - | chr1_4:20945314-20945333 | Msa0155520:intron | 30.0% | |
| GTTGAAAATGATTCATTGGA+AGG | - | chr1_4:20945318-20945337 | Msa0155520:intron | 30.0% | |
| !!! | TAGTTTTATTGATAAAGCCG+TGG | + | chr1_4:20945738-20945757 | None:intergenic | 30.0% |
| CATTCTATTCATTTCTCTCT+CGG | + | chr1_4:20945776-20945795 | None:intergenic | 30.0% | |
| ACAAAATTTCTTGGTTGTGT+TGG | - | chr1_4:20945845-20945864 | Msa0155520:CDS | 30.0% | |
| TGTGTAAACGACAAGTAAAA+AGG | - | chr1_4:20945870-20945889 | Msa0155520:CDS | 30.0% | |
| GACAAGTAAAAAGGAATGAA+GGG | - | chr1_4:20945879-20945898 | Msa0155520:CDS | 30.0% | |
| TTTATAGGGGAAGAAATGAA+TGG | - | chr1_4:20945953-20945972 | Msa0155520:CDS | 30.0% | |
| TTGTCAAGTTCTTCAATTGA+AGG | - | chr1_4:20946037-20946056 | Msa0155520:CDS | 30.0% | |
| TGATTGAAGAGACTTCATTA+AGG | + | chr1_4:20946132-20946151 | None:intergenic | 30.0% | |
| ATACTTGAAAGATTCCAGAT+CGG | - | chr1_4:20946205-20946224 | Msa0155520:CDS | 30.0% | |
| AAGCATTTGTGAAACTGTTT+AGG | - | chr1_4:20946270-20946289 | Msa0155520:CDS | 30.0% | |
| ! | CAATTAAATCTAGGCTTGTT+TGG | + | chr1_4:20946486-20946505 | None:intergenic | 30.0% |
| ATCAAATGATTCAGAACTTC+AGG | - | chr1_4:20946654-20946673 | Msa0155520:intron | 30.0% | |
| TGAAAATGAGAATCAGCATT+TGG | + | chr1_4:20946769-20946788 | None:intergenic | 30.0% | |
| ! | TTTTCAACAGTTGAAACATG+AGG | - | chr1_4:20946783-20946802 | Msa0155520:CDS | 30.0% |
| TGAGGTTTCAGAAAAAGATA+TGG | - | chr1_4:20946801-20946820 | Msa0155520:CDS | 30.0% | |
| CAACAATGGAGAAAATTTCA+AGG | - | chr1_4:20946942-20946961 | Msa0155520:CDS | 30.0% | |
| ACAAATAAGTCAATCCAAAC+AGG | + | chr1_4:20946977-20946996 | None:intergenic | 30.0% | |
| AGACTATTTGAGAGAGTTTA+TGG | - | chr1_4:20947024-20947043 | Msa0155520:CDS | 30.0% | |
| ! | TTTTCCACCTATATCTCTTT+AGG | - | chr1_4:20947075-20947094 | Msa0155520:CDS | 30.0% |
| ATAAGCACTTATCACATAAG+AGG | + | chr1_4:20947341-20947360 | None:intergenic | 30.0% | |
| GAAAATAAATTGAGCGAAAG+TGG | - | chr1_4:20947413-20947432 | Msa0155520:CDS | 30.0% | |
| TAAGCAAGATCAATGCATAA+AGG | - | chr1_4:20947463-20947482 | Msa0155520:CDS | 30.0% | |
| ATCATTACATAGGAAGATTC+TGG | + | chr1_4:20947725-20947744 | None:intergenic | 30.0% | |
| TATGGTGCCTATAATAAATC+AGG | - | chr1_4:20947790-20947809 | Msa0155520:intron | 30.0% | |
| CATATCTATAAATACCAGCA+GGG | - | chr1_4:20947851-20947870 | Msa0155520:intron | 30.0% | |
| !!! | TAAGATTTTGGGTTGAAATG+TGG | + | chr1_4:20948111-20948130 | None:intergenic | 30.0% |
| CATTTCAACCCAAAATCTTA+AGG | - | chr1_4:20948111-20948130 | Msa0155520:intron | 30.0% | |
| AAGAAGCAATTGAGAAAGAA+AGG | - | chr1_4:20948348-20948367 | Msa0155520:intron | 30.0% | |
| AGAAGCAATTGAGAAAGAAA+GGG | - | chr1_4:20948349-20948368 | Msa0155520:intron | 30.0% | |
| TAAATGGTGGTTATGAAACA+AGG | - | chr1_4:20948462-20948481 | Msa0155520:intron | 30.0% | |
| AAATGGTGGTTATGAAACAA+GGG | - | chr1_4:20948463-20948482 | Msa0155520:intron | 30.0% | |
| TGGAGAGAAAATAGTTACTA+TGG | - | chr1_4:20948706-20948725 | Msa0155520:intron | 30.0% | |
| !! | TAACAATGCTGGTTCAAAAA+TGG | - | chr1_4:20948823-20948842 | Msa0155520:intron | 30.0% |
| AAGCAGTATAGGAGCAATAA+TGG | - | chr1_4:20942375-20942394 | Msa0155520:CDS | 35.0% | |
| AAAAGAGAAAACTTGGAGTG+GGG | + | chr1_4:20942426-20942445 | None:intergenic | 35.0% | |
| CAAAAGAGAAAACTTGGAGT+GGG | + | chr1_4:20942427-20942446 | None:intergenic | 35.0% | |
| ACAAAAGAGAAAACTTGGAG+TGG | + | chr1_4:20942428-20942447 | None:intergenic | 35.0% | |
| TTATGGCATGAATGATGGTT+TGG | + | chr1_4:20942471-20942490 | None:intergenic | 35.0% | |
| CTGGATACACCCTTAAATTA+TGG | + | chr1_4:20942488-20942507 | None:intergenic | 35.0% | |
| ATTGTTGAGTAGCTCATAGT+TGG | + | chr1_4:20942707-20942726 | None:intergenic | 35.0% | |
| AATGCAGTGCTTAATACCTT+TGG | + | chr1_4:20942796-20942815 | None:intergenic | 35.0% | |
| ATTGAGTATGGGCAAAGAAA+TGG | - | chr1_4:20943328-20943347 | Msa0155520:CDS | 35.0% | |
| TTGAGTATGGGCAAAGAAAT+GGG | - | chr1_4:20943329-20943348 | Msa0155520:CDS | 35.0% | |
| AACAACACTTCTGCTATCAA+AGG | - | chr1_4:20943356-20943375 | Msa0155520:CDS | 35.0% | |
| AGCTTTCTTGTAACCATCAT+TGG | + | chr1_4:20943729-20943748 | None:intergenic | 35.0% | |
| CTTGAAAGTGATTCATTGGA+AGG | - | chr1_4:20944019-20944038 | Msa0155520:intron | 35.0% | |
| GAGAAGTCAAATGATTCCAA+TGG | - | chr1_4:20944210-20944229 | Msa0155520:intron | 35.0% | |
| AGCTTTCTCTTCAACATCTT+TGG | + | chr1_4:20944242-20944261 | None:intergenic | 35.0% | |
| ! | GCTACAATTGATTCATTGGA+AGG | - | chr1_4:20944259-20944278 | Msa0155520:intron | 35.0% |
| ! | ATTGATTCATTGGAAGGAGA+TGG | - | chr1_4:20944265-20944284 | Msa0155520:intron | 35.0% |
| TGATGAATCTGAAGATGTTG+AGG | - | chr1_4:20944330-20944349 | Msa0155520:CDS | 35.0% | |
| AGATGTTGAGGAGAAAGATA+CGG | - | chr1_4:20944342-20944361 | Msa0155520:CDS | 35.0% | |
| AAGAAGTTCACTTGAAAAGG+AGG | - | chr1_4:20944384-20944403 | Msa0155520:CDS | 35.0% | |
| !!! | CTTGAAAAGGAGGTTTTGAA+AGG | - | chr1_4:20944394-20944413 | Msa0155520:CDS | 35.0% |
| GATGATCATGAAATAACTGC+AGG | - | chr1_4:20944421-20944440 | Msa0155520:CDS | 35.0% | |
| TTGACATGCATTATTCTGAG+AGG | + | chr1_4:20944639-20944658 | None:intergenic | 35.0% | |
| AAGACGAAAAACAAAAGCGA+CGG | + | chr1_4:20944685-20944704 | None:intergenic | 35.0% | |
| TATCTCATTTGCATGTTCAC+TGG | + | chr1_4:20944797-20944816 | None:intergenic | 35.0% | |
| !!! | TTTTTTAGCCGAAGACGTTA+CGG | - | chr1_4:20944846-20944865 | Msa0155520:intron | 35.0% |
| AAAACAAGCATGCATGAAAG+TGG | - | chr1_4:20945033-20945052 | Msa0155520:intron | 35.0% | |
| GCATGAAAGTGGTTATTCAT+TGG | - | chr1_4:20945044-20945063 | Msa0155520:intron | 35.0% | |
| TCATGCAAGTGACATAAGTA+TGG | - | chr1_4:20945077-20945096 | Msa0155520:intron | 35.0% | |
| AATTCATCCAAAAGCCAAAG+AGG | - | chr1_4:20945107-20945126 | Msa0155520:intron | 35.0% | |
| !!! | ACATATTCCTCTTTGGCTTT+TGG | + | chr1_4:20945117-20945136 | None:intergenic | 35.0% |
| TATGTTGAGGAGAAAGCTAT+AGG | - | chr1_4:20945132-20945151 | Msa0155520:CDS | 35.0% | |
| GATGTTGAGGAGAAATCTAT+AGG | - | chr1_4:20945402-20945421 | Msa0155520:intron | 35.0% | |
| TGAGGAGAAATCTATAGGAA+TGG | - | chr1_4:20945407-20945426 | Msa0155520:intron | 35.0% | |
| TCAAGGAAAAACTACCATCT+TGG | - | chr1_4:20945593-20945612 | Msa0155520:intron | 35.0% | |
| ! | TCGATTCTGGGAAATTCATT+TGG | - | chr1_4:20945633-20945652 | Msa0155520:CDS | 35.0% |
| ! | ATTCTGGGAAATTCATTTGG+TGG | - | chr1_4:20945636-20945655 | Msa0155520:CDS | 35.0% |
| GTTCAACACAACATTAACCA+CGG | - | chr1_4:20945718-20945737 | Msa0155520:CDS | 35.0% | |
| CGACAAGTAAAAAGGAATGA+AGG | - | chr1_4:20945878-20945897 | Msa0155520:CDS | 35.0% | |
| GAAGTCTCTTCAATCAAACA+AGG | - | chr1_4:20946136-20946155 | Msa0155520:CDS | 35.0% | |
| CTCTTCAATCAAACAAGGTT+AGG | - | chr1_4:20946141-20946160 | Msa0155520:CDS | 35.0% | |
| TCGAATAAGTCGATCCAAAT+AGG | + | chr1_4:20946234-20946253 | None:intergenic | 35.0% | |
| ! | AAACTGTTTAGGATAGCTTG+TGG | - | chr1_4:20946281-20946300 | Msa0155520:CDS | 35.0% |
| ATTCATTGCCTTGAAGTGAA+TGG | + | chr1_4:20946726-20946745 | None:intergenic | 35.0% | |
| ! | TGTTGTTGTTGCCAATACTT+GGG | + | chr1_4:20946927-20946946 | None:intergenic | 35.0% |
| ! | TTGTTGTTGTTGCCAATACT+TGG | + | chr1_4:20946928-20946947 | None:intergenic | 35.0% |
| !! | AGTATTGGCAACAACAACAA+TGG | - | chr1_4:20946928-20946947 | Msa0155520:CDS | 35.0% |
| CTATCCTAAAGAGATATAGG+TGG | + | chr1_4:20947082-20947101 | None:intergenic | 35.0% | |
| CGACTATCCTAAAGAGATAT+AGG | + | chr1_4:20947085-20947104 | None:intergenic | 35.0% | |
| TGATCTTGCTTAGAATCTTG+TGG | + | chr1_4:20947455-20947474 | None:intergenic | 35.0% | |
| ! | ATCATATGTATTGGCCATGT+CGG | + | chr1_4:20947507-20947526 | None:intergenic | 35.0% |
| TAATGTCCTTGATACTTCTG+TGG | - | chr1_4:20947583-20947602 | Msa0155520:CDS | 35.0% | |
| AGAGAAACTGCTTCAATTTC+AGG | + | chr1_4:20947611-20947630 | None:intergenic | 35.0% | |
| TTATAGGCACCATATCAGAA+TGG | + | chr1_4:20947784-20947803 | None:intergenic | 35.0% | |
| GCATATCTATAAATACCAGC+AGG | - | chr1_4:20947850-20947869 | Msa0155520:intron | 35.0% | |
| AAGAATGAGCTAAATGATCC+AGG | - | chr1_4:20948066-20948085 | Msa0155520:intron | 35.0% | |
| ACCCAAAATCTTAAGGCTTT+CGG | - | chr1_4:20948118-20948137 | Msa0155520:intron | 35.0% | |
| ! | TCCGAAAGCCTTAAGATTTT+GGG | + | chr1_4:20948122-20948141 | None:intergenic | 35.0% |
| CAAGTGATGTTTGGATTATC+AGG | + | chr1_4:20948521-20948540 | None:intergenic | 35.0% | |
| TCTGAAGACTTATCAAGCAA+TGG | + | chr1_4:20948617-20948636 | None:intergenic | 35.0% | |
| ! | AGATGATAGCTTGTCAAACA+AGG | - | chr1_4:20948634-20948653 | Msa0155520:intron | 35.0% |
| GTGTCATCTATTTCACCTAA+AGG | - | chr1_4:20948857-20948876 | Msa0155520:intron | 35.0% | |
| ! | TTGCGCTTTTCTTTTCCTTT+AGG | + | chr1_4:20948875-20948894 | None:intergenic | 35.0% |
| ! | GAAAAGAAAAGCGCAAATTG+CGG | - | chr1_4:20948879-20948898 | Msa0155520:intron | 35.0% |
| AAAGAGAAAACTTGGAGTGG+GGG | + | chr1_4:20942425-20942444 | None:intergenic | 40.0% | |
| ! | TTAGTGTGAAGTGTCAATGC+TGG | + | chr1_4:20942507-20942526 | None:intergenic | 40.0% |
| ! | CTTCACACTAAAAGTGTGTC+TGG | - | chr1_4:20942516-20942535 | Msa0155520:CDS | 40.0% |
| AGGGTTAAACTCTCATGTGT+TGG | - | chr1_4:20942554-20942573 | Msa0155520:CDS | 40.0% | |
| CAGACATATGACCCAAAATG+AGG | - | chr1_4:20942861-20942880 | Msa0155520:CDS | 40.0% | |
| TCAATAGCTGAAGCCAATGA+TGG | - | chr1_4:20943713-20943732 | Msa0155520:CDS | 40.0% | |
| ATGGTTACAAGAAAGCTACG+CGG | - | chr1_4:20943732-20943751 | Msa0155520:CDS | 40.0% | |
| TCATGCAAGTGGTACAAGTA+TGG | - | chr1_4:20943814-20943833 | Msa0155520:CDS | 40.0% | |
| TCGCTGCAAGAAGAAATTCA+CGG | - | chr1_4:20943896-20943915 | Msa0155520:intron | 40.0% | |
| TCAAATGATTCCGACAGATG+AGG | - | chr1_4:20943940-20943959 | Msa0155520:intron | 40.0% | |
| CGAGCTTGAAAGTGATTCAT+TGG | - | chr1_4:20944015-20944034 | Msa0155520:intron | 40.0% | |
| AATGCATCCAAAAGCTGAAG+TGG | - | chr1_4:20944084-20944103 | Msa0155520:intron | 40.0% | |
| ! | ACATCTTCCACTTCAGCTTT+TGG | + | chr1_4:20944094-20944113 | None:intergenic | 40.0% |
| TGAAGTGGAAGATGTTCAAG+AGG | - | chr1_4:20944099-20944118 | Msa0155520:intron | 40.0% | |
| !! | ACATCTTTGGCCTTATCCAT+TGG | + | chr1_4:20944229-20944248 | None:intergenic | 40.0% |
| GATGTTGAGGAGAAAGATAC+GGG | - | chr1_4:20944343-20944362 | Msa0155520:CDS | 40.0% | |
| TCAAGGAGAAACTGCAATCT+TGG | - | chr1_4:20944549-20944568 | Msa0155520:CDS | 40.0% | |
| AACAAAAGCGACGGGTAAAA+AGG | + | chr1_4:20944676-20944695 | None:intergenic | 40.0% | |
| AGACGAAAAACAAAAGCGAC+GGG | + | chr1_4:20944684-20944703 | None:intergenic | 40.0% | |
| CATGTTCACTGGTATCTTCT+AGG | + | chr1_4:20944786-20944805 | None:intergenic | 40.0% | |
| ACGTCTTCGGCTAAAAAAGT+TGG | + | chr1_4:20944844-20944863 | None:intergenic | 40.0% | |
| ! | AGGTTTTTCCGTAACGTCTT+CGG | + | chr1_4:20944857-20944876 | None:intergenic | 40.0% |
| AGCCAAAGAGGAATATGTTG+AGG | - | chr1_4:20945119-20945138 | Msa0155520:CDS | 40.0% | |
| CTCCTCAACATATTCCTCTT+TGG | + | chr1_4:20945124-20945143 | None:intergenic | 40.0% | |
| TGAGGAGAAAGCTATAGGAT+TGG | - | chr1_4:20945137-20945156 | Msa0155520:CDS | 40.0% | |
| GAAGATGCAACAACTGAACT+TGG | - | chr1_4:20945165-20945184 | Msa0155520:CDS | 40.0% | |
| TCAGATGATTCCAACAGATG+AGG | - | chr1_4:20945239-20945258 | Msa0155520:CDS | 40.0% | |
| ACATCTTTGACCTCATCTGT+TGG | + | chr1_4:20945252-20945271 | None:intergenic | 40.0% | |
| TGATGAAGCTGAAGATGTTG+AGG | - | chr1_4:20945389-20945408 | Msa0155520:intron | 40.0% | |
| ATGATCATGAAAGAGCTGCA+GGG | - | chr1_4:20945481-20945500 | Msa0155520:intron | 40.0% | |
| ! | TTCTGACGAACAATCGATTC+TGG | - | chr1_4:20945620-20945639 | Msa0155520:CDS | 40.0% |
| ! | TCTGACGAACAATCGATTCT+GGG | - | chr1_4:20945621-20945640 | Msa0155520:CDS | 40.0% |
| !! | GGAAATTCATTTGGTGGTGA+AGG | - | chr1_4:20945642-20945661 | Msa0155520:CDS | 40.0% |
| TTCCAGATCGGAAACCTATT+TGG | - | chr1_4:20946217-20946236 | Msa0155520:CDS | 40.0% | |
| ATCCAAATAGGTTTCCGATC+TGG | + | chr1_4:20946222-20946241 | None:intergenic | 40.0% | |
| TTATGTCCGCAAAAGTCAGA+TGG | - | chr1_4:20946841-20946860 | Msa0155520:CDS | 40.0% | |
| ! | TCTCTTCCATCTGACTTTTG+CGG | + | chr1_4:20946850-20946869 | None:intergenic | 40.0% |
| CAAAAGTCAGATGGAAGAGA+TGG | - | chr1_4:20946850-20946869 | Msa0155520:CDS | 40.0% | |
| ACATTTGATCCCCCAAGTAT+TGG | - | chr1_4:20946913-20946932 | Msa0155520:CDS | 40.0% | |
| ! | TTGTTGTTGCCAATACTTGG+GGG | + | chr1_4:20946925-20946944 | None:intergenic | 40.0% |
| ! | GTTGTTGTTGCCAATACTTG+GGG | + | chr1_4:20946926-20946945 | None:intergenic | 40.0% |
| TCTCGGATACGGTTGTAAAA+TGG | + | chr1_4:20947181-20947200 | None:intergenic | 40.0% | |
| ! | ATTTTACAACCGTATCCGAG+AGG | - | chr1_4:20947180-20947199 | Msa0155520:CDS | 40.0% |
| AGTTCAAATCCTCTCGGATA+CGG | + | chr1_4:20947192-20947211 | None:intergenic | 40.0% | |
| AGATGGAGTTCAAATCCTCT+CGG | + | chr1_4:20947198-20947217 | None:intergenic | 40.0% | |
| GATATCACAGTAGGGTCTAA+TGG | - | chr1_4:20947524-20947543 | Msa0155520:CDS | 40.0% | |
| GAAGCAGTTTCTCTTATTGC+AGG | - | chr1_4:20947617-20947636 | Msa0155520:CDS | 40.0% | |
| TCTTGATTGCACACATGACA+AGG | - | chr1_4:20947655-20947674 | Msa0155520:CDS | 40.0% | |
| CTTGATTGCACACATGACAA+GGG | - | chr1_4:20947656-20947675 | Msa0155520:CDS | 40.0% | |
| AGAGCAATGCCATTCTGATA+TGG | - | chr1_4:20947772-20947791 | Msa0155520:CDS | 40.0% | |
| AGAGCAGACCAAAAGTTTCA+CGG | - | chr1_4:20947880-20947899 | Msa0155520:intron | 40.0% | |
| TTACTTTGTATTTGGGTGGC+CGG | - | chr1_4:20948011-20948030 | Msa0155520:intron | 40.0% | |
| CTATGATGATTCCCTAACAC+CGG | + | chr1_4:20948033-20948052 | None:intergenic | 40.0% | |
| ! | ATTTAGCTCATTCTTGCTCC+CGG | + | chr1_4:20948061-20948080 | None:intergenic | 40.0% |
| ! | CTCCGAAAGCCTTAAGATTT+TGG | + | chr1_4:20948123-20948142 | None:intergenic | 40.0% |
| CAAAATCTTAAGGCTTTCGG+AGG | - | chr1_4:20948121-20948140 | Msa0155520:intron | 40.0% | |
| AGAAGCAACTTCACTGATAG+TGG | - | chr1_4:20948391-20948410 | Msa0155520:intron | 40.0% | |
| AAACAAGGGACAGTGTAACA+AGG | - | chr1_4:20948477-20948496 | Msa0155520:intron | 40.0% | |
| TGCATCTGACAAGTGATGTT+TGG | + | chr1_4:20948530-20948549 | None:intergenic | 40.0% | |
| CGATTCTTCTCGTCTTGATT+CGG | + | chr1_4:20948585-20948604 | None:intergenic | 40.0% | |
| CGAATCAAGACGAGAAGAAT+CGG | - | chr1_4:20948583-20948602 | Msa0155520:intron | 40.0% | |
| ATGAGACCATACTCATCATG+AGG | + | chr1_4:20948686-20948705 | None:intergenic | 40.0% | |
| CATGATGAGTATGGTCTCAT+TGG | - | chr1_4:20948686-20948705 | Msa0155520:intron | 40.0% | |
| CAGACACAAGATAACAATGC+TGG | - | chr1_4:20948812-20948831 | Msa0155520:intron | 40.0% | |
| AGTTTAACCCTGACACGTGT+CGG | + | chr1_4:20942545-20942564 | None:intergenic | 45.0% | |
| GCTACGCGGTTTGATTCTAA+CGG | - | chr1_4:20943746-20943765 | Msa0155520:CDS | 45.0% | |
| GAAGAAGATGCTCATGCAAG+TGG | - | chr1_4:20943803-20943822 | Msa0155520:CDS | 45.0% | |
| AATGCATCCAACAGCTGAAG+AGG | - | chr1_4:20943844-20943863 | Msa0155520:CDS | 45.0% | |
| ! | ACATCATTGGCCTCATCTGT+CGG | + | chr1_4:20943953-20943972 | None:intergenic | 45.0% |
| GTGGAAGATGTTCAAGAGGA+AGG | - | chr1_4:20944103-20944122 | Msa0155520:intron | 45.0% | |
| GATGTTCAAGAGGAAGGTTC+AGG | - | chr1_4:20944109-20944128 | Msa0155520:intron | 45.0% | |
| TGAGGAGAAAGATACGGGAA+TGG | - | chr1_4:20944348-20944367 | Msa0155520:CDS | 45.0% | |
| GGCTTCTGATCATGATCCAT+TGG | - | chr1_4:20944570-20944589 | Msa0155520:CDS | 45.0% | |
| GCATCATGAGCATCTTCTTG+TGG | + | chr1_4:20944925-20944944 | None:intergenic | 45.0% | |
| GATGATCATGAAAGAGCTGC+AGG | - | chr1_4:20945480-20945499 | Msa0155520:intron | 45.0% | |
| TTCGTCAGAAGAAGCCAAGA+TGG | + | chr1_4:20945610-20945629 | None:intergenic | 45.0% | |
| ! | TCGGCATATGGAGACTTTTC+AGG | + | chr1_4:20945989-20946008 | None:intergenic | 45.0% |
| CTATCCAGCCATTCACTTCA+AGG | - | chr1_4:20946715-20946734 | Msa0155520:CDS | 45.0% | |
| ATTGCCTTGAAGTGAATGGC+TGG | + | chr1_4:20946722-20946741 | None:intergenic | 45.0% | |
| CAAGGTATGTAGAGCCTGTT+TGG | - | chr1_4:20946960-20946979 | Msa0155520:CDS | 45.0% | |
| GTCAGCTTAAGGCAAGAGTT+TGG | + | chr1_4:20947235-20947254 | None:intergenic | 45.0% | |
| ! | TTCCATGAGGTGTCAGCTTA+AGG | + | chr1_4:20947246-20947265 | None:intergenic | 45.0% |
| ! | TCAAGAGTACAAGTCCGACA+TGG | - | chr1_4:20947490-20947509 | Msa0155520:CDS | 45.0% |
| !! | CAGGAACCACAGAAGTATCA+AGG | + | chr1_4:20947592-20947611 | None:intergenic | 45.0% |
| ACCTGATTTAAGCATGCTCG+TGG | + | chr1_4:20947906-20947925 | None:intergenic | 45.0% | |
| CGAGCATGCTTAAATCAGGT+AGG | - | chr1_4:20947906-20947925 | Msa0155520:CDS | 45.0% | |
| TGTGCCACAATTGACAAGCT+TGG | - | chr1_4:20947956-20947975 | Msa0155520:intron | 45.0% | |
| ATGGCCAAGCTTGTCAATTG+TGG | + | chr1_4:20947963-20947982 | None:intergenic | 45.0% | |
| ! | CGGTGTTAGGGAATCATCAT+AGG | - | chr1_4:20948031-20948050 | Msa0155520:intron | 45.0% |
| !! | TTGGGTTGAAATGTGGTGTC+CGG | + | chr1_4:20948104-20948123 | None:intergenic | 45.0% |
| TTTCTGAACCACCGAGAGAT+CGG | + | chr1_4:20948159-20948178 | None:intergenic | 45.0% | |
| !! | CTTCTCGTCTTGATTCGGTT+CGG | + | chr1_4:20948580-20948599 | None:intergenic | 45.0% |
| TCAGTGCCTCATGATGAGTA+TGG | - | chr1_4:20948677-20948696 | Msa0155520:intron | 45.0% | |
| AGAAGCTCCTGTTCTAGTCA+TGG | - | chr1_4:20948787-20948806 | Msa0155520:intron | 45.0% | |
| CCAACATCCTCTTCAGCTGT+TGG | + | chr1_4:20943854-20943873 | None:intergenic | 50.0% | |
| CCAACAGCTGAAGAGGATGT+TGG | - | chr1_4:20943851-20943870 | Msa0155520:CDS | 50.0% | |
| !! | CCTTCGACTGATTCGGCATA+TGG | + | chr1_4:20946001-20946020 | None:intergenic | 50.0% |
| CCATATGCCGAATCAGTCGA+AGG | - | chr1_4:20945998-20946017 | Msa0155520:CDS | 50.0% | |
| GCTCTCACCTTCGACTGATT+CGG | + | chr1_4:20946008-20946027 | None:intergenic | 50.0% | |
| TGCCTTAAGCTGACACCTCA+TGG | - | chr1_4:20947241-20947260 | Msa0155520:CDS | 50.0% | |
| GGGTCTAATGGAGACTGCAA+TGG | - | chr1_4:20947536-20947555 | Msa0155520:CDS | 50.0% | |
| TCTGCTCTACATTTCCCTGC+TGG | + | chr1_4:20947868-20947887 | None:intergenic | 50.0% | |
| GCCACGAGCATGCTTAAATC+AGG | - | chr1_4:20947902-20947921 | Msa0155520:CDS | 50.0% | |
| ! | TATTTGGGTGGCCGGTGTTA+GGG | - | chr1_4:20948019-20948038 | Msa0155520:intron | 50.0% |
| GGGAATCATCATAGGAGAGC+CGG | - | chr1_4:20948039-20948058 | Msa0155520:intron | 50.0% | |
| GGAATCATCATAGGAGAGCC+GGG | - | chr1_4:20948040-20948059 | Msa0155520:intron | 50.0% | |
| ATCCAGGATCACCAAGAGAC+CGG | - | chr1_4:20948082-20948101 | Msa0155520:intron | 50.0% | |
| AAATGTGGTGTCCGGTCTCT+TGG | + | chr1_4:20948096-20948115 | None:intergenic | 50.0% | |
| TAAGGCTTTCGGAGGAGACA+TGG | - | chr1_4:20948129-20948148 | Msa0155520:intron | 50.0% | |
| TTCTGAACCACCGAGAGATC+GGG | + | chr1_4:20948158-20948177 | None:intergenic | 50.0% | |
| AAATACCGTTCCAGCTGTCG+GGG | + | chr1_4:20948209-20948228 | None:intergenic | 50.0% | |
| CAAATACCGTTCCAGCTGTC+GGG | + | chr1_4:20948210-20948229 | None:intergenic | 50.0% | |
| CCAAATACCGTTCCAGCTGT+CGG | + | chr1_4:20948211-20948230 | None:intergenic | 50.0% | |
| CGGAGGTTGAGATTGAAGCT+TGG | + | chr1_4:20948560-20948579 | None:intergenic | 50.0% | |
| GTCTGTGCCATGACTAGAAC+AGG | + | chr1_4:20948797-20948816 | None:intergenic | 50.0% | |
| GAGAAAACTTGGAGTGGGGG+AGG | + | chr1_4:20942422-20942441 | None:intergenic | 55.0% | |
| ! | GCTGCAGGGTTGAGTTCTGA+TGG | - | chr1_4:20945495-20945514 | Msa0155520:intron | 55.0% |
| ! | GCTCGTGGCCGTGAAACTTT+TGG | + | chr1_4:20947891-20947910 | None:intergenic | 55.0% |
| GTATTTGGGTGGCCGGTGTT+AGG | - | chr1_4:20948018-20948037 | Msa0155520:intron | 55.0% | |
| GACATGGTGTCCCGATCTCT+CGG | - | chr1_4:20948145-20948164 | Msa0155520:intron | 55.0% | |
| GGAGTCTCGAGAGCAACAAC+GGG | + | chr1_4:20948188-20948207 | None:intergenic | 55.0% | |
| GGGAGTCTCGAGAGCAACAA+CGG | + | chr1_4:20948189-20948208 | None:intergenic | 55.0% | |
| CCGACAGCTGGAACGGTATT+TGG | - | chr1_4:20948208-20948227 | Msa0155520:intron | 55.0% | |
| !! | CTCGTCTTGATTCGGTTCGG+AGG | + | chr1_4:20948577-20948596 | None:intergenic | 55.0% |
| TCTGGTGTCCGACACGTGTC+AGG | - | chr1_4:20942534-20942553 | Msa0155520:CDS | 60.0% | |
| CTGGTGTCCGACACGTGTCA+GGG | - | chr1_4:20942535-20942554 | Msa0155520:CDS | 60.0% | |
| ! | GTCCGGTCTCTTGGTGATCC+TGG | + | chr1_4:20948087-20948106 | None:intergenic | 60.0% |
| ATGGTGTCCCGATCTCTCGG+TGG | - | chr1_4:20948148-20948167 | Msa0155520:intron | 60.0% | |
| AGACTCCCCGACAGCTGGAA+CGG | - | chr1_4:20948201-20948220 | Msa0155520:intron | 60.0% | |
| TCTCGAGACTCCCCGACAGC+TGG | - | chr1_4:20948196-20948215 | Msa0155520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 20942327 | 20948949 | 20942327 | ID=Msa0155520;Name=Msa0155520 |
| chr1_4 | mRNA | 20942327 | 20948949 | 20942327 | ID=Msa0155520-mRNA-1;Parent=Msa0155520;Name=Msa0155520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.22|0.66|1|1|9|0|1354 |
| chr1_4 | exon | 20948880 | 20948949 | 20948880 | ID=Msa0155520-mRNA-1:exon:7581;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20947899 | 20947958 | 20947899 | ID=Msa0155520-mRNA-1:exon:7580;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20946657 | 20947793 | 20946657 | ID=Msa0155520-mRNA-1:exon:7579;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20945613 | 20946530 | 20945613 | ID=Msa0155520-mRNA-1:exon:7578;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20945119 | 20945316 | 20945119 | ID=Msa0155520-mRNA-1:exon:7577;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20944313 | 20944665 | 20944313 | ID=Msa0155520-mRNA-1:exon:7576;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20943294 | 20943875 | 20943294 | ID=Msa0155520-mRNA-1:exon:7575;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20943047 | 20943188 | 20943047 | ID=Msa0155520-mRNA-1:exon:7574;Parent=Msa0155520-mRNA-1 |
| chr1_4 | exon | 20942327 | 20942931 | 20942327 | ID=Msa0155520-mRNA-1:exon:7573;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20948880 | 20948949 | 20948880 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20947899 | 20947958 | 20947899 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20946657 | 20947793 | 20946657 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20945613 | 20946530 | 20945613 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20945119 | 20945316 | 20945119 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20944313 | 20944665 | 20944313 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20943294 | 20943875 | 20943294 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20943047 | 20943188 | 20943047 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| chr1_4 | CDS | 20942327 | 20942931 | 20942327 | ID=Msa0155520-mRNA-1:cds;Parent=Msa0155520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
